LOCUS       DBBXPZ010000001        48554 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.001, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000001 DBBXPZ010000000
VERSION     DBBXPZ010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 48554)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 48554)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..48554
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.001"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            47..718
                     /gene="racR"
                     /locus_tag="ACJFD7_000001"
     CDS             47..718
                     /gene="racR"
                     /locus_tag="ACJFD7_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HGG0858868.1"
                     /translation="MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQG
                     YDCLILDLTLPGIDGLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPY
                     DPKEMYARIMSLIRRTKRVEHTNNENINSAFKIDERRHEITYEDKVLILTPAEFEILE
                     YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIG
                     YKLIG"
     gene            715..1950
                     /gene="racS"
                     /locus_tag="ACJFD7_000002"
     CDS             715..1950
                     /gene="racS"
                     /locus_tag="ACJFD7_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArsS family sensor histidine kinase"
                     /protein_id="HGG0858869.1"
                     /translation="MTKNYSIHTKLIILFVVTFFLVCVLFIVLLKIEGNTYNEEESLK
                     QENLIKNLLISYENTSGVEIGAYLGNSGFNAIQNPNLVKAIRNNGQSLFKAGGELCTL
                     SSLKYHSNLYFDVQCKDFDGLYEENTSDRVYNLLLIGFFSFSLLVVFMYFSVLKSLEP
                     LKKLRRQVAEVANGEQPDFLDYQEDEVGKIAFEFQKAFKKNQELIQSRQLFLRTIMHE
                     LKTPIGKGRIISEMIKEDRQKERLIAIFLRMDSLINEFAKIENLFSKNYNLHFKPSRF
                     STILEEAKEHLMIDDFNKVVKVDIRYDALINVDMEIFSVILKNLIDNALKYSNNGTCE
                     LFCCKECFTIKNPGKPLAEPIEHYLEAFTREKHNQVKGMGLGLYIVSEVCKLHNFDLI
                     YFYDDGKHCFKIFSGDKEK"
     gene            1950..2522
                     /gene="recR"
                     /locus_tag="ACJFD7_000003"
     CDS             1950..2522
                     /gene="recR"
                     /locus_tag="ACJFD7_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HGG0858870.1"
                     /translation="MVKGLEKFNELVESFANLPTIGKKTAIRLAYHLCINNQIDGMKL
                     AHNIENAIRFIKPCEQCGALSENELCEICSDEERNKNILCIVESPKDILTLEESQSYN
                     GLYFVLDELNEEKLEKLKQIILKLNISELIFALTHSINSDATIFFIEDKFKGLNLTFS
                     KIAQGIPSGVNLENVDLISLNKAMNFRTKI"
     gene            complement(2519..3055)
                     /gene="hydD"
                     /locus_tag="ACJFD7_000004"
     CDS             complement(2519..3055)
                     /gene="hydD"
                     /locus_tag="ACJFD7_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HGG0858871.1"
                     /translation="MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFTHSEFTLDFVDG
                     GTLALQLSYIIARCDRLIVLDCIEAQGASIGDVFFFPYDAMPNKISWSGSAHEIEMLQ
                     TLQYMELAGDLPKTHILACVPKRIEAMSFKLSDELIQGAKIMEKTLLDFLSKEGFTYE
                     KIADFSLQELADISYKNY"
     gene            complement(3052..3744)
                     /gene="cybH"
                     /locus_tag="ACJFD7_000005"
     CDS             complement(3052..3744)
                     /gene="cybH"
                     /locus_tag="ACJFD7_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HGG0858872.1"
                     /translation="MQNKEEKLQRKAEYEFSIGLRLTHWVRAIAIVILIGTGYYLSYV
                     FQSPISNGEPVNFMQAKYRLVHQAVGFVLIACIIFKVYLFFCDKVSAKERRSVWDIFN
                     IKLWIEQVKFYIFLGKHPHLKGVYNPLQFVTYFFFYLVILGIILTGLILYTHTYHEGL
                     GGLLYHILRPLEAAMGGLADVRTYHRILMWVIMIFVPVHIYMAIFNAVKGKDGAMDAI
                     ISGYKFVKEEKH"
     gene            complement(3755..5470)
                     /gene="hydB"
                     /locus_tag="ACJFD7_000006"
     CDS             complement(3755..5470)
                     /gene="hydB"
                     /locus_tag="ACJFD7_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HGG0858873.1"
                     /translation="MSQKIIVDPITRIEGHLRVEVVVDDNNVVKEAYAGSTLWRGIET
                     IVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLMNAALFL
                     HDHIVHFYQLHGLDWADVVSALNADVKKASDEAFKYTPNPYATGLDKLLEVQQRLKTF
                     VDKGNLGPFANAYYGHPTYRLSPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQ
                     SLTVGGVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDI
                     GVNNLYTFKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHP
                     YDGKTNPNYTGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIV
                     VNYAKGNQNVVPVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVE
                     NLKVDQSTCAPYVIDNSKEYKGRYMGHVPRGTLSHWCRIKNGVIENWQAVVPSTWNAS
                     PKDANGVGGSYEQCLIGLKIADVKQPLEIIRKIHSYDPCIACAVHVMDTKGNNLSEYK
                     VNVNL"
     gene            complement(5473..6612)
                     /gene="hydA"
                     /locus_tag="ACJFD7_000007"
     CDS             complement(5473..6612)
                     /gene="hydA"
                     /locus_tag="ACJFD7_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HGG0858874.1"
                     /translation="MIDYHQIESRLSTLEKLPSLKDNDSITKALEKSGFSRRDFMKWA
                     GAMTAFLALPASFTPMVAKAAELADRLPVVWLHMAECTGCSESLLRSDTPTIDSLIFD
                     YISLEYHETVMAAAGWQAEENLENAIQKHKNKYILMVEGGIPMGDTEHFLTIGAHGKT
                     GYELSKMASENALAIFAIGTCSSFGGIQAARPNPSNAQPLSKVTSKTVINVPGCPPSE
                     KNIVGNVLHYLLFGELPALDVYNRPKWAYGLRIHDLCERRGHFDAGEFVHAFGDEGAK
                     QGFCLYKVGCKGPYTFNNCSRERFNQHTSWPIQAGHGCIGCSEPNFWDTMGPFEEPMA
                     SRKFDTVFGLGADSVSDKIGIGVLTLTGVAIAAHAVISSMQKDKE"
     gene            complement(6732..8573)
                     /gene="mnmC"
                     /locus_tag="ACJFD7_000008"
     CDS             complement(6732..8573)
                     /gene="mnmC"
                     /locus_tag="ACJFD7_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004808 - tRNA
                     (5-methylaminomethyl-2-thiouridylate)(34)-
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016645 - oxidoreductase activity, acting
                     on the CH-NH group of donors [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HGG0858875.1"
                     /translation="MKKAKLIFKDNTPFSLDFDDFYFNSKDGLNESKFVYTYSFEWKN
                     QENFIIAESGFGIGLNFFLTLKRFLETTPSKRPKKLFYISIEAFYIEKEQLREIYQKL
                     GFYEEFKELLEQFLKFYPKAKEGIYRFYFEDCFLDLVFEDIAVLKELNFKADVWYLDG
                     FSPNKNSQMFDENLIFEVARLSKKNTQICTFSSASFLQKNLKKYGFRVEKTKGFRKRE
                     MIKAYLENELEFKDKEAYFSRTFSSLKNKKVAIIGAGISSAVLAYELSLRGFEIDIFE
                     KHLELGKGASGNESGILSSLILKPKVNLGEFSELSFIEASRFYRQILDLEFKGVVEFA
                     HNDLMQERFDTQRENVLFKISKNQAFLEEGGVIFPKKLVKNLFEKSKACIYFNHEFQA
                     YKFENGCFSLKFKNDVVKSDYAVLIYAMGADAKDFVFYDEMKLSKVRGQVTHLKPFLD
                     TPFPLSSKAYICPVKDDLQVIGASYDRLNASLESKEEDDKQNIENIADFMDKNTKLEI
                     IGSKVGFRSYSSDRFMIVGNAYDEAFYKEEYKALLWTKNKEQKPAKMSCNLYFNFAHG
                     SRGFSTSVLAARYLCALINNEPLCLEKKYIHAIHPARFLIRKLKKGL"
     gene            complement(8570..10549)
                     /gene="amiA"
                     /locus_tag="ACJFD7_000009"
     CDS             complement(8570..10549)
                     /gene="amiA"
                     /locus_tag="ACJFD7_000009"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HGG0858876.1"
                     /translation="MAKIFVFLVFAFTTLFGAYENELANFDKNFIGSKSEVQVKFHHQ
                     LKSLYIQSVIHEDEKTKIEILKRLIISSNTLNLDDKSYANELKESGISEASINALRKA
                     VIKDIKVQNISQDTEKSTFEPIKTVQKNEKKSSNEQIKNTEKTNSKTSQAPKNSIVSK
                     AKSDDKIYVLKSSKTNQGVEFELNADLDKDQLKSFALDEKGNYRFISDFDGVLEGGKK
                     EFKFDDYRLVISQFNPKTIRIVVYAKEKIPIDISFKEEKIIFSKETTSQKKTEQVSKI
                     SEKKQDQKTEIKTKVLETKKQDKKTNNEKENQEPLYVLDVDKISNAVVLNLSDDLDEK
                     EIAVFDTKDQKFRYVVSFKGVLEGNRKSFTFGQNVITVTQYNPKTVRVVLSAPKEFKL
                     LKELDNNNLTLGFYIQTTNQNANKKATQSSSKTLNTNYKSGKLVVIDAGHGGKDSGAL
                     SDKKGSLKEKDIVLSTALKLGNELKKRGYKVLYTRSSDKFINLRDRTKYANDKRADLF
                     ISIHANAAPNATKAKSSEGVETFFLSPARSERSKKAAEKENQGDFEEINYFSKQSILN
                     FLNREKIVASNKLAIDVQKNILTQTRKKYKIVDGGVREAPFWVLVGAQMPAILIEIGY
                     ITHPNEGKRIANKAFQDLLVKGIADGVESYFYNNR"
     gene            complement(10549..11640)
                     /locus_tag="ACJFD7_000010"
     CDS             complement(10549..11640)
                     /locus_tag="ACJFD7_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018580 - nitronate monooxygenase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HGG0858877.1"
                     /translation="MNLQPLQIGKHTIKYPIFQGGMGLGISWDRLASAVSLNGGLGII
                     SSVGTGYYEERKYASKELNAKPYGSENFYSRKGLQALINNARKVCGDAPLGCNILCAS
                     NDYARIARDACEVGFNVIVSGAGLPTNLPEFTADFPDVALVPIISSAKALKIICKRWQ
                     SRYNRLPDAVVLEGPKSGGHQGFTYEQCLDPNYQLEKLIAPVVEEAKNWGSFPVIAAG
                     GIWDKKDIENAISLGASGVQMGTRFIGTFECDASEEFKSVLLASKEEDIELIKSPVGY
                     PARGVRTNLLNLVDKRMGPKINCISNCVAPCGRGKEATKVGYCIADRLFDAWSGKKET
                     GLFFTGVNGYRLDKLISVKELMEKLVNGE"
     gene            complement(11637..12842)
                     /gene="tyrS"
                     /locus_tag="ACJFD7_000011"
     CDS             complement(11637..12842)
                     /gene="tyrS"
                     /locus_tag="ACJFD7_000011"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HGG0858878.1"
                     /translation="MDIKKILAEVKRGCAELIDEERIENLIKNYYEKGENFFIKAGFD
                     PTAPDLHLGHSVVLTKMAFLQKHGAIVQFLIGDFTGQIGDPSGKSATRKKLDKEQVLI
                     NAKTYETQVFKVLDKEKTQIKFNSTWLNELGAAGIVELTSTFSVARMLERDDFTKRFK
                     EQSPISICEFLYPLLQGYDSVALKSDIEMGGTDQKFNLLMGRQLQRVYNIGKEQAVIM
                     MPLLEGLDGVNKMSKSLNNYIGVTEKANDMYAKILSISDELMFRYYELLSQKSLEEIA
                     QIKKDIEQGNLHPKKAKENLALEITERFHSKEEANNAKSEFDRIHSQNALPSDMAEFE
                     IQGKIWLAKALVECGLESSTSAARRSISANAVSVNSQKVSDEQMYLEQGEYILQIGKR
                     KFAKLKVKE"
     gene            complement(12854..15049)
                     /gene="spoT"
                     /locus_tag="ACJFD7_000012"
     CDS             complement(12854..15049)
                     /gene="spoT"
                     /locus_tag="ACJFD7_000012"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0015970 - guanosine tetraphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HGG0858879.1"
                     /translation="MKPIDEELLLEQLIDNVKNCKDLEAAKALLFEICGHDAILEKAV
                     DYCIFCHEGQFRKSGEPYAVHPILVATLVGFLSENKSNILAALLHDVIEDTNCTEEEL
                     REQFGSEVLKLVLGLTKIIEIREDNLISSKSKKSLTKSALTFRNMLLASIEDVGVLIV
                     KLCDRLHNMLTLDILREDKQKRISEETLVVYAPIAHRLGISSIKNYLEDLSFKYLMPD
                     EYKLIDNYINSNNQEMQLGLNEFISKIELLFLSNGFRQGSFEIQKRIKHSYSIYLKMQ
                     RKGIGIEEVLDLLGVRILVEKVSDCYLALGILHTHFNPLVSRFKDYIALPKQNGYQTI
                     HTTLFDAKSIIEAQIRTFDMHKIAEFGIAAHWKYKEDGSVVAPRLDWLTDISMQSINN
                     LENAEDYNAIELYEYAKDSLYVEDVAVYSPKGEIFTLPRGATVLDFAYEVHTKVGLHA
                     KSAYVNRIKVPLLTELKNGDIVRVVTSNDKFYRCSWIDSVKTGKAKASIREFCKQKIR
                     EINLASSINMLSFIFGVDKNRIETWIEKENLARRIRQVATDSAYLKDIVNGLKKYAKK
                     SYWFDKYEIKEQKIGNFTLYCNHKIANVDFDFCCHPKRGDAVLAFVKGGNAIVHHKLC
                     DRADKMIDNNQDMVFIKWDSNIPKSYKLIFSLENKKGVLAEFLAFLAKMQINLLTINL
                     SSDLNSAVDYFEITMEIPDNINPDSVKDRLKSRCKILDFTSLNDAYKEG"
     gene            complement(15033..15257)
                     /gene="rpoZ"
                     /locus_tag="ACJFD7_000013"
     CDS             complement(15033..15257)
                     /gene="rpoZ"
                     /locus_tag="ACJFD7_000013"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HGG0858880.1"
                     /translation="MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDF
                     DKNKNKLADIALYEIAENKITLEGLVETNR"
     gene            complement(15268..15987)
                     /gene="pyrH"
                     /locus_tag="ACJFD7_000014"
     CDS             complement(15268..15987)
                     /gene="pyrH"
                     /locus_tag="ACJFD7_000014"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HGG0858881.1"
                     /translation="MQERKRVLVKFSGEALAGENGFGIENSILKFIASEIKELIKNQI
                     EVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEALESSGLEVRVQS
                     AIQMEAFCETYIMRRAQRHLEKGRVVVFAAGTGNPYFTTDTTAILRAVEIDADMVIKA
                     TKVNGVYDKDPKQFDDAVFLNTLSYDEAMQDNIKVMDDTAIALAKDNKLPIVVCNMFE
                     EGNLLKIIQGDTSLCSIVKNN"
     gene            complement(16039..17232)
                     /locus_tag="ACJFD7_000015"
     CDS             complement(16039..17232)
                     /locus_tag="ACJFD7_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein hydrolase activator EnvC"
                     /protein_id="HGG0858882.1"
                     /translation="MRKNILIFFCFFLFVDISLANAINEKTKSLEENKRIQEQLNKKL
                     EDLASDILNGEKSLKDLSLQIESLNSQTSKLEASAKAQNQELNTLTSQNEDLLKSKSN
                     MEGKLISLMAKDFAYDLPIPQGYIESEESFMAFEILGSLNKVLNEEIFKISKDYEGVS
                     RLIDDKQAQIKKINESLKDYNAQLAKLQSLKQKQISEINKQKTDRTIYAKKLDDLQAQ
                     QEELRKTLNQLKIINNKEGANLNKNDTKIVKNNQQIRQLGSSYQGSSVKRYTGKKTIA
                     PLDSFTVKQKFGNYVDPVYNLKIFNENVVLRSNKSDAVVKNVLDGKIVFAKDTSMLAR
                     VVIVEHDNGIHTIYAHLDKIAPNIKVGKNIKKGAVVGRIKNDLTFEVTQKNFHINPLE
                     LISLN"
     gene            complement(17229..18035)
                     /locus_tag="ACJFD7_000016"
     CDS             complement(17229..18035)
                     /locus_tag="ACJFD7_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0858883.1"
                     /translation="MKFFKTHLSLILPLLFMMFAFEFILVTNATLKHYEELVNKDYNI
                     IVVSKTELDQNVVKTKVPFFAGLESLDPKDLIDRLKNDVSEKNLKVLKDSLPKFYTLK
                     LNSLPDQNELNLIKNQLLNIVGVSKVETFSKTHDKIYSLLILMKFVFWLFLFIIILLA
                     FVLFLKQMRIWLYEHTDRIEIMCLFGAPFWFRSFMLYKVVVVDCFIAFVILLAFFTQI
                     FDLSIIQESLKAVDIIFPPINFILHLTLIFLATLFICLLCVNTVMFKVKR"
     gene            complement(18022..18687)
                     /locus_tag="ACJFD7_000017"
     CDS             complement(18022..18687)
                     /locus_tag="ACJFD7_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0007049 - cell cycle [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HGG0858884.1"
                     /translation="MPNLIQANKLTLGYDELVIKEASFAFKDDDFVFITGKSGSGKST
                     LLKSFYGDLEPISGKLEVCGSLMNKIGNLELLKLRQRIGIIFQDYKLVQEYSVEKNVM
                     LPLMIKGYSKKVCHDQATKLLKHVNLTFKADKLPNQLSGGEQQRVAMARALAHNPKLL
                     LCDEPTGNLDEYSSDIIWTLLKSARELLGTCVIVVTHRIPSNLRVDYRRFNIENGKMN
                     EIF"
     gene            complement(18757..19935)
                     /gene="trmB"
                     /locus_tag="ACJFD7_000018"
     CDS             complement(18757..19935)
                     /gene="trmB"
                     /locus_tag="ACJFD7_000018"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HGG0858885.1"
                     /translation="MPNFKSKKIKEINLPCSKDDVEFLWLAKNDNVSLIYTKVQEESF
                     FLQIKKAQNGFVIKGDKHTKPSKIGYLQKALKIFKEDFCEDIINEAFGLKNNALIEKT
                     PFIVDNFDELLSKLQGKIYIEIGFGSGRHLLYQAKENPNVLILGVEIYNPALTQVAKL
                     AKAQNVNNILLIQSDARLLLSVLKSKSVEKIFLHFPVPWDKKPHRRVIGKDFCKECAR
                     VLTQNGRFELRTDSFEYFNFTLEQFLTFPVPKFSLRKNENLEISSKYEDRWKKQEKNI
                     YDLWVWNFNQECRNYELNEFNLSSVEFSKEDLKKIEQNFKNITIKKDDFFLHFESIYK
                     QDENLLLKVAFGAFNKPEHCYLHLDKTIDFAFKEPFKIQENIKAINELKEILKVQFKI
                     "
     gene            complement(19935..21170)
                     /locus_tag="ACJFD7_000019"
     CDS             complement(19935..21170)
                     /locus_tag="ACJFD7_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HGG0858886.1"
                     /translation="MMKRFRLSFYLSFLTLLLNACSVSQMNSLASSKEPAVNESLPKV
                     ESLKSLSDMSNIAFEWEPLYNENIKGFYLYRSSDENPDFKLVGTIKDKFQTHYVDTKL
                     EPGTKYRYMMKSFNEQGQISEDGKVIEVSTAPRLEAVPFVQAVTNLPNRIKLIWRPHP
                     DFRVDSYIIERTKGDDKEFKKIAEVKNRLNAEYIDSDLKPNENSSYRIIAVSFNGIKS
                     GSSQVISSTSKALPPQVEHLSASTDGSSKIILTWDAPTYEDFSYYKVYSTSSSFLPFS
                     VLAKTDKNSYEDIVEGAGKSKYYKVTMVDKDGLESPMPKDGVEGKTLGNPLAPSIILA
                     QSTSEGINLEWSDNDTRAVEYEVRRYGGEQNAVFKGIKEKRLKDVKALPGVEYSYEVI
                     AIDSAGLRSEPSNKVKAAQ"
     gene            complement(21115..22083)
                     /locus_tag="ACJFD7_000020"
     CDS             complement(21115..22083)
                     /locus_tag="ACJFD7_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HGG0858887.1"
                     /translation="MQTFLVDENSRLDVFLAKKLNQSRNQVALLIEKDCVQVNDKIQD
                     KNSFKLKNGDIVSIASLKLCNEIKPQFEVDFDIDVLYEDEDLLVLNKPSNLVVHGASS
                     VKNATLVDWLIEKKYTLSNLGGEIRAGLVHRLDKDTSGSILIAKNNFTHQKLSEQLAD
                     KSMGRIYLALIDLPLKEDKIIVEKFLMRSPSNAIKKIAIDKENKFSKNAKSAFINVVK
                     TENLTLMAAKLFTGRTHQIRAHLASLNRYILGDSLYGYKGKYDCRIMLHAYFLYFIHP
                     KTKEQIFVKAPLMEDFKNIMFEQINLGENDEKISLEFLLEFFNSFA"
     gene            22161..23261
                     /gene="mrdB"
                     /locus_tag="ACJFD7_000021"
     CDS             22161..23261
                     /gene="mrdB"
                     /locus_tag="ACJFD7_000021"
                     /EC_number="2.4.99.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008955 - peptidoglycan
                     glycosyltransferase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HGG0858888.1"
                     /translation="MFRLDRRILTHFDYMQPILFLPIILISFFLIFEANPFLAEKQFV
                     YACVGLFAFMVFFFFPIRKFIWIIPVAYWINIFLLLSVDIFGVEKLGAKRWLEIPFTH
                     FTIQPSEIFKPSFILMLAYLIYQNPPPKNGYKLKQFIKLSFYIILPFLLIAKEPDLGS
                     AMVLLLVGFGVLFIMGVHYKIWLSIVIAISVSSPIIYTHLLKPYQKQRIHDFISEKPS
                     YQVAQSMIAIGNGGLTGKSQDEATQTHFKFLPISTSDFIFAYMIERFGFIGGLTLIIF
                     YILLIFHLLSLNYKLKDDYFARVAINCVALFIFIYAAVNISMTIGFAPVVGIPLPFFS
                     YGGSSFTIFMIFFGILQHLITFRYFWTDIKAK"
     gene            23315..23391
                     /locus_tag="ACJFD7_000022"
     tRNA            23315..23391
                     /locus_tag="ACJFD7_000022"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:23349..23351,aa:Ile,seq:cat)
     gene            complement(23500..23575)
                     /locus_tag="ACJFD7_000023"
     tRNA            complement(23500..23575)
                     /locus_tag="ACJFD7_000023"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(23540..23542),aa:Phe,seq:gaa)
     gene            23715..25058
                     /gene="ktrB"
                     /locus_tag="ACJFD7_000024"
     CDS             23715..25058
                     /gene="ktrB"
                     /locus_tag="ACJFD7_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HGG0858889.1"
                     /translation="MKQFGLDRRTFKILLAGYIIIALFGALLLHSSWAHTTPIDFLDA
                     FFTSTSAVSMTGLVVKNTAVDFTLAGQIIILALVQIGGLGYMGIGLFVYILIRKKVGF
                     SARNLLKESLFYPSMDGLFKFFKKVLLFIFTIELIGAILLTMRFTLEMNFKKALWFGI
                     FHSISAFNNSGFTIFEHGLIAYKHDIAINLIITSLIIIGGLGYFVLVELYFFQRKKLQ
                     NLSLHTKMVVVASIFLIFSSTLIIFAFEYSNPQTIGHFSFFDKILSSYFIAINYRTAG
                     FNTLDMGHLHDASLFFGSLFMVIGGAPGGTAGGMKVTTVMVLLLYAYWSIRDGRVRIF
                     GHEIPRETISKAFIIAVGSAVYIVIAVILLSLLESKFDFIALLFETSSAFATVGISVG
                     NGGTLSLCALFSDPSKVIIIIMMLSGRIGVFAFLLSVFKQDKAIHLKFPEGKVNL"
     gene            25069..25719
                     /gene="ktrA"
                     /locus_tag="ACJFD7_000025"
     CDS             25069..25719
                     /gene="ktrA"
                     /locus_tag="ACJFD7_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HGG0858890.1"
                     /translation="MKNLNYGIIGLGKFGSVVADELIAGGHTVIVADKDEEALKSIQN
                     PPSYAYILDSTNISALKEAGFHDVEVVIVSIGENVEKSILTLMALKDIGVKNIIAKAT
                     SNIHGQILSKLGATKVIYPEKESAKRLVKEFLTKDADYEVFDLSANTIRAIKINIDEK
                     LAGNSLKHVAQNMKVISYKKLNSDWEILPDLETTTVYSGDVVILLGTVKELREFEH"
     gene            complement(25716..26387)
                     /locus_tag="ACJFD7_000026"
     CDS             complement(25716..26387)
                     /locus_tag="ACJFD7_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MqnA/MqnD/SBP family protein"
                     /protein_id="HGG0858891.1"
                     /translation="MIFGKIDYINLLPLHIYLKKYPLPNGYKASMEYKKGVPSKLNKD
                     LFYRRIDAAIISSIESARKKYKNLDLGICANKRVLSVLVEKNTSNAKDPSSATSNALA
                     KVLKQDGKVIIGDKALKLYLKDPSKYIDLCAKWHEKTGSPFVFARFSCVQKKALYKQI
                     LKKFPKTKIKIPYYILQNYAKTRDLDIKDVRYYLDEVIYHKISTKEKTALKRFVKACK
                     ALNLA"
     gene            complement(26393..27019)
                     /gene="upp"
                     /locus_tag="ACJFD7_000027"
     CDS             complement(26393..27019)
                     /gene="upp"
                     /locus_tag="ACJFD7_000027"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004845 - uracil phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006223 - uracil salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HGG0858892.1"
                     /translation="MKNIHCINHPLIEHKLGILRAKETKPFQFRMLIDEISSFLLFEA
                     SKDFSLKEIEISTPIQKTIVKKLDEKIMICPILRAALGMLESVFKMIPDASVGFLGFV
                     RNEETLKADFYFQKLPKDAKKRTAIVIDPMFSTGGTAIDACNFLKSQGVKKIKFISIL
                     AAPQGLKKFSQMHDDVEVFVACIDEGLNEKGYIIPGLGDAGDRVFNTL"
     gene            complement(27016..28251)
                     /locus_tag="ACJFD7_000028"
     CDS             complement(27016..28251)
                     /locus_tag="ACJFD7_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme-like NAD(P)-binding protein"
                     /protein_id="HGG0858893.1"
                     /translation="MNLKEEALKYHLGGKIDIVPSKPMATSHDLSLAYSPGVAEPCLE
                     IAKDNELAYTYTNKANLVAIVSDGSAVLGLGNIGAQASKPVMEGKACLFKKFANVNAY
                     DIEIDVHSIEEIVNFCKSLAPTVGGINLEDIAAPKCFEIEAALQDLGIPVMHDDQHGT
                     AIISTAGLMNAMEISGKKFKDIKVVVSGAGAAGIASAKMYRNLGVENIILVDSKGVIS
                     KDRNDLTPQKLEFTVDSKEKTLKEVLKGADVFLGLSAPKILDDEMVLSMAKDPVIFAL
                     ANPIPEVMPEDVARLRKDAIVGTGRSDYPNQINNVLGFPFIFRGALDVRASKITENMK
                     VAAAKALADLAKLPVSDAVKKAYNLSTLEFGRDYVIPKPFDERVKAAVSTAVAAAAVK
                     DGVAKVKNFDEKAYFESLK"
     gene            complement(28253..29644)
                     /gene="gltX"
                     /locus_tag="ACJFD7_000029"
     CDS             complement(28253..29644)
                     /gene="gltX"
                     /locus_tag="ACJFD7_000029"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HGG0858894.1"
                     /translation="MHEKLTTRFAPSPTGYLHIGGLRTALYNYLYARKNGGNFLLRIE
                     DTDLKRNSKEATKAIIEAFKWCGLEHDGEVTYQSERFDLYKEYVKKLLDEGKAYYCYM
                     SKEELEELRAKQEAAKERPRYDGKYREFTGTPPQGIEPVVRIKAPQSGEIVFEDGVKG
                     EVRFKAEDIMDDFIIARSDGTPTYNFTVVIDDALMGVSDVIRGDDHLSNTPKQIVLYE
                     ALGFKIPKFFHVAMIHGEDGKKLSKRHGATDVMEYKEMGILPQALLNFLVRLGWSHGD
                     DEVFSLEDLKKLFDPYHINKSASCYNVKKLEWLNAHYIKTLPFEEINRQLKDLGFDLS
                     VYEKAGFLLDLLRERAKTLHDIINGAKSIVNAPQNYDENAVQKFINKNNLELLQAFAN
                     TLKDQKTGKDFEDFTNDFLEKKEAKLKDLAQPIRIALTGSAVSPSIFEVLEFLEVDEC
                     KKRIENFLKVRGK"
     gene            29709..30524
                     /gene="salC"
                     /locus_tag="ACJFD7_000030"
     CDS             29709..30524
                     /gene="salC"
                     /locus_tag="ACJFD7_000030"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SalC"
                     /protein_id="HGG0858895.1"
                     /translation="MKKILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKAL
                     KIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSK
                     NQSYEQFRANFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANI
                     YLSNNPQTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGGFSPVLNGKNGY
                     ELYEVKSKDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEYLR"
     gene            complement(30561..31892)
                     /gene="accC"
                     /locus_tag="ACJFD7_000031"
     CDS             complement(30561..31892)
                     /gene="accC"
                     /locus_tag="ACJFD7_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HGG0858896.1"
                     /translation="MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLK
                     YADASICIGKARSSESYLNIPAIITAAEIAEADAIFPGYGFLSENQNFVEICAKHNIK
                     FIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKA
                     AAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDS
                     FGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFE
                     FLVDKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPSQESIKLNGHS
                     IECRITAEDSKTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPPYYDSMIGKLVVWA
                     EDRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFINNNYDTNYLARH"
     gene            complement(31894..32349)
                     /gene="accB"
                     /locus_tag="ACJFD7_000032"
     CDS             complement(31894..32349)
                     /gene="accB"
                     /locus_tag="ACJFD7_000032"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HGG0858897.1"
                     /translation="MTKEEIKELVNLFAEANISKIKIKEQDGFEIELERDMCCDVPAP
                     VCPPVPAPQPINVSVVNEAQPSQSVKSNKPSINSPMVGTFYQAPSPGAAPFVKIGSTV
                     KKGDTIAIIEAMKIMNEIEAEFDCRIAEILVADGQPVEFGMPLFAVEKL"
     gene            32497..33057
                     /gene="dcd"
                     /locus_tag="ACJFD7_000033"
     CDS             32497..33057
                     /gene="dcd"
                     /locus_tag="ACJFD7_000033"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0006229 - dUTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HGG0858898.1"
                     /translation="MGLKADNWIRKMALEHKMIEPFCEANIGKGVVSYGLSSYGYDIR
                     VGREFKIFTNVNSTVVDPKNFVEENVVDFEGDVCIVPANSFALARTIEYFKMPDDVLA
                     ICLGKSTYARCGIIVNVTPFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDE
                     KCDTTYKDKKGKYQAQTGITLPRILK"
     gene            33106..34110
                     /gene="pseB"
                     /locus_tag="ACJFD7_000034"
     CDS             33106..34110
                     /gene="pseB"
                     /locus_tag="ACJFD7_000034"
                     /EC_number="4.2.1.115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (inverting)"
                     /protein_id="HGG0858899.1"
                     /translation="MFNKKNILITGGTGSFGKTYTKVLLENYKPNKIIIYSRDELKQF
                     EMASVFNAPCMRYFIGDVRDKERLSVAMRDVDFVIHAAAMKHVPIAEYNPMECIKTNI
                     HGAQNVIDACFENGVKKCIALSTDKACNPVNLYGATKLASDKLFVAANNIAGNKQTRF
                     GVTRYGNVVGSRGSVVPFFKKLIGEGAKELPITDARMTRFWISLEDGVKFVLSNFARM
                     HGGEIFIPKIPSMKITDLAHALAPHLSHKIIGIRAGEKLHEIMISSDDSHLTYEFENY
                     YAISPSIKLVDQESDFSINALGEKGQKVKDGFSYSSDNNPLWASEKELLEIINHTEGF
                     "
     gene            34112..35242
                     /gene="pseC"
                     /locus_tag="ACJFD7_000035"
     CDS             34112..35242
                     /gene="pseC"
                     /locus_tag="ACJFD7_000035"
                     /EC_number="2.6.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine transaminase"
                     /protein_id="HGG0858900.1"
                     /translation="MLTYSHQNIDQSDIDALTKALKDEILTGGKKVDEFEEALCEYAG
                     VKHACVLNSATSALHLAYTALDIKEKIVLTTPLTFAATANAALIAGAKVEFIDIKNDG
                     NIDEKKLEARLLKDSKNIGAISVVDFGGNSVEIDEISSLAKKYNIPLIDDASHALGAL
                     YKSEKVGKKADLSIFSFHPVKPITTFEGGAVVSDNEELITKIKLLRSHGIIKKRLWDS
                     DMIELGYNYRLSDVACALGINQLKKLDHNLEKREEIASFYDKEFEKNPYFSTIKIKNY
                     KKSSRHLYPILLFPEFYCQKEELFESLLHAGVGVQVHYKPTYEFSFYKKLLGEIKLRN
                     ADNFYKAELSIPCHQEMNLKDAKFVKDTLFSILEKVKKGYCG"
     gene            35235..36543
                     /locus_tag="ACJFD7_000036"
                     /pseudo
     CDS             35235..36543
                     /locus_tag="ACJFD7_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344685.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
     gene            36540..37331
                     /locus_tag="ACJFD7_000037"
     CDS             36540..37331
                     /locus_tag="ACJFD7_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046353 - aminoglycoside
                     3-N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAC(3) family N-acetyltransferase"
                     /protein_id="HGG0858901.1"
                     /translation="MKYFLEHNGKKYSDKDLIDAFYQLGIKRGDILCVHTELMKFGKA
                     LLTKNDFLKTLLECFFKVLGKEGTLLMPTFTYSFCKNETYDKVHSKSKVGVLNEFFRT
                     SGGGVRRTSDPIFSFAVKGAKADIFLKENSSCFGKDSVYEILTREGGKFMLLGLNYGH
                     ALTHYAEERNTSFCRYFKEFKGFVIDELGQKREKRINYYVRDLEKAYVCSLDKINEIV
                     RQTRYYKSIKFAGDFLESYDAKEYVKAIGNALKQDKFAIYEKLLL"
     gene            37352..38143
                     /gene="legH"
                     /locus_tag="ACJFD7_000038"
     CDS             37352..38143
                     /gene="legH"
                     /locus_tag="ACJFD7_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase LegH"
                     /protein_id="HGG0858902.1"
                     /translation="MKYLLEFENKKYSTYDFIETFYKLGLQKGDTLCVHTELFNFGFP
                     LLSRNEFLQTILDCFFEVIGKEGTLIMPTFTYSFCKNEVYDKINSKTKMGALNEYFRK
                     QTGVKRTNDPIFSFAIKGAKEELFLKDTTSCFGENCVYEVLTKENGKYMTFGGQGHTL
                     THYAEEQFNVFYRYHKIFSGILIDENNISYNKTISYYVRKLDISSEPNLINIINIVNN
                     TKNFKKNNFAGDHINIYNAKEYIEILWKKLDINQTILIENYDTIY"
     gene            38174..38404
                     /locus_tag="ACJFD7_000039"
     CDS             38174..38404
                     /locus_tag="ACJFD7_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HGG0858903.1"
                     /translation="MEKQFYEILKNILETKVDENTNLSMENCKNWTSLAHIDIIMSLE
                     EEFEIKFNKEDLSLLKSQSALLEKIQTLKAEK"
     gene            38401..39294
                     /locus_tag="ACJFD7_000040"
     CDS             38401..39294
                     /locus_tag="ACJFD7_000040"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HGG0858904.1"
                     /translation="MKENIEKLFQAIAQKNPIHSKYLKKIEFSQEDEEEFDKLISYYI
                     QDGISIKEQCDCYLLILNDTLEETKFFIENGAYRYSSFDEVKDKVYFNESYMKQYMIG
                     LALSSFVWIAHIKVRKYFSQYLKNFTPKTTYFEIGPGHGEYFARAVKSGKFSAFYGLD
                     ISPTSCELTQKMVKQQVGGLITKCDFLCQDFFTYDFDKKADLIVIGEVLEHVEKPLEF
                     LKRSKELLSDVGEIFATIPINAPAIDHIYLFSHPDEVKDLIEKSGLKFKAYECFMAND
                     YSLEKALKFKNAITMAVVLNA"
     gene            39287..39703
                     /locus_tag="ACJFD7_000041"
     CDS             39287..39703
                     /locus_tag="ACJFD7_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HGG0858905.1"
                     /translation="MLNTTLNLPLHHIGVACKNLEKERECFFKLGFYKESEFIDEKQG
                     VRGEFIIPCNEAFPQYRFELLQNLNDKGPLDSYLKNNTKMYHLAYESKNIAQDLILLE
                     QQGGICIVPIMQASYFAKLCFIMMPNRLLIELVELK"
     gene            39700..41262
                     /locus_tag="ACJFD7_000042"
     CDS             39700..41262
                     /locus_tag="ACJFD7_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HGG0858906.1"
                     /translation="MNLFSPHLKRNELIKFAKELDFSKSQDLLINVHRNHAFEGVQSI
                     IAPFLHFANLRAEFNFSSYDDSLSFDNFKEASLELLWLDLTRYKNNVQNFIEERLLEL
                     RKISQNPILVLSLGEFKTDKKILNCEIFNIEKLIKEYFDEEDILDLAKEELTGSKLNN
                     KALIFLAQILGLSLIPALVKPALKALVLDLDNTLYQGILGEEGIDNLNLSPLHKTLQE
                     KIKTFKKQGFLLALASKNEEKDAKKLFEIRKDFILQWDDFDARMINWEPKGENILKIA
                     KKFNINTNAMLFIDDNIAELENTKITGVKTLLCDENILYKIKLFPNLLKLSNTKEDQI
                     RAKDIAANALREELKSLSDEEYFQNLEISLNFSKNDLQNIPRISELLGKTNQFIANYT
                     RLNQEKVAQHMQKELIVSVSMSDKLSDSGIIAIFVFSCKEGNLFIDDLCISCRALGRK
                     LETRMFFKAFELALHFFDLKNNNARLYYQKGERNMPFLSFLEQISKEFEKNSALIPFQ
                     NLNFKGLIIHEN"
     gene            41252..42313
                     /locus_tag="ACJFD7_000043"
     CDS             41252..42313
                     /locus_tag="ACJFD7_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HGG0858907.1"
                     /translation="MKTRFDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKK
                     VIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACY
                     LHQLLNLSSKTVAFDLGQACAGYLYGLFVAHSLIQSGLGKILLICGDTLSKFIHPKNM
                     NLAPIFGDGVSATLIEKTDFNEAFFELGSDGRHFDKLIIPKGAMRIPKADIFNDDSLM
                     QTEEFRQLENLYMDGVNIFNMALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYLVD
                     CIKEELKLNDDKVPNFIMEKYANLSACSLPALLCELDTPKEFKASLSAFGAGLSWGSA
                     VLNFKDLYTKDILIYTKEK"
     gene            42313..42534
                     /locus_tag="ACJFD7_000044"
     CDS             42313..42534
                     /locus_tag="ACJFD7_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HGG0858908.1"
                     /translation="MTKTEFLEELKEAMHRDEDLNEDMLLDDIDEWDSLAFVSVMVLY
                     KNLFTLKITAEDLKNCQKVSDLINLAKLD"
     gene            complement(42548..43765)
                     /locus_tag="ACJFD7_000045"
     CDS             complement(42548..43765)
                     /locus_tag="ACJFD7_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HGG0858909.1"
                     /translation="MLINQTFEIDSCDDVELGIKRTSKLEYRISYDDEKDLKAIVFVI
                     GGYGANANIYFLDSYRNYIAKNFDVVTINVFYHCFCQRRSDVEKYSAYKYFQEEDIEN
                     IKNLLNQFHFSYGEINNDNALFLANSLVKHVENLKMQNKLDHNFKLNFTSTFIPPNGD
                     YQNFGIMAAIDHINALKDLVKCFPKFADLPKIYGGGSYGGYLALLIAKIAPWYVDGVI
                     DNSGSALPPLNYILGREMEHSYGDYYEDFPHNRIIFFLKTHWTRKENSPYFFNNENYF
                     IRTLLNKDHLILQSQKNKNIIYVSYHSKEDPLTPANFKEQTMQILKILGYDVSLNLID
                     ENKIDGKFIKNLDHGCGIPDKALFRKELPLMLEKLQGRKSFMQENSISYPCGNKVFTF
                     KDVGDKFELEIKD"
     gene            complement(43778..45004)
                     /locus_tag="ACJFD7_000046"
     CDS             complement(43778..45004)
                     /locus_tag="ACJFD7_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HGG0858910.1"
                     /translation="MLINQTFEIDSCDDVELNIKRTSKLEYRISYDDEKEMKAIVFII
                     GGYGANANIHFLDSYRNYIAKKFDVATINVFYHCFCQRPSDVEKYSTLADFTKEDLRL
                     MEKVLCKYNIPCDQLANNTVVSHCEYLSEIMTELKMLNRLPYDFEERLSATYIPSDGE
                     YQNFGIMAAIDHINALKDLVKRFPKFADLPKIYGGGSYGGYLALLIAKIAPWYVDGVI
                     DNSGSAVPPLNYIIGRELEFESKDTNGDMYIQGNHFFVSCFLKTYWNRDENSPYFFAK
                     ENYLIRALLNKEHLIIQSEKNTNIFYVSYHSKYDPLTPCKFKIAYIESLQYLGYDATL
                     HIIDENKIDGRFAKDLTHGMGIPDKALFRKELPLMLEKLQKRKSFMQENSISYPCGNK
                     VFTFKDVENQLKLIIN"
     gene            45065..46573
                     /locus_tag="ACJFD7_000047"
     CDS             45065..46573
                     /locus_tag="ACJFD7_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HGG0858911.1"
                     /translation="MTTHIYDFLEKSLIKFSEKTAFVEPFAKERKEITYKDFDLFSKK
                     LASEILKTLKNDNPTQVPVLIILPKGIDCLISFFGVALSGNFYTLLDEKSPKERVEKV
                     IEVLKPKLFITSKDLNFNLDLPTLYTQDFESFDIDESLIKHAKEKHIDTNLLYVFFTS
                     GSTGIPKGVSIAHKSVIDYTFWVCETFKFDENEILANQAPFYFDNSILDIFSSVKSGA
                     TLHLLPNHLFAFPNKILECLEKEKVSTIFWVPSVLIYFANTEALNNFSLNALKKILFC
                     GEIMPNKQLNIWRKHLPNALFANLYGPTEITDVCSFYIINRTFKDEELLPIGKACKNT
                     ELLVFDENMNFISPKQIGVKGELFVRGTSLSLGYYNDKEKTKQAFIQNPLHDNYLDLL
                     YKTGDIVSYNEFGELLCYGRADNQIKYMGHRIELGEIESVINSHVNIKNSACIFKEDI
                     ICFYESEEEINFKDFLKDKLPSYMIPKNFIKLDKFKLNQNGKIDRKVLKELV"
     gene            46613..46840
                     /locus_tag="ACJFD7_000048"
     CDS             46613..46840
                     /locus_tag="ACJFD7_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HGG0858912.1"
                     /translation="MQEIKQFFINIERTDINESMENLVSEDFIDSIDIMALVAEIEKF
                     YKKPLKAEFITPENFESFENIKKMLETAMKD"
     gene            complement(46837..47907)
                     /locus_tag="ACJFD7_000049"
     CDS             complement(46837..47907)
                     /locus_tag="ACJFD7_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HGG0858913.1"
                     /translation="MTAYLHIGTTNTGNQEKQGFLMQNEEKLLQKAYIYPKSLRVANR
                     HWALVDMVLELVQKEDILKKESVLSHITNERLLRAIENFKSESALHKDKKFIFSAEGI
                     VWDFSTKKHVEILEKIMRELGFTQIYIIVYFRDTLGYLNSHCSQDHKNNMGYYSADFA
                     PQDHPRKYIFDYEWICKTHAEVFGEENLIVRLLREDYVGGTLLKDFVYHLGLEWDESF
                     VLKQTKNESFNLLGMELMSRLNQKDLKQDNLNSLLFMARRKFEGSKEKRLKFAVQKDI
                     AKAYVDYFASSLEWVKNKYFPHKNSLFAPVNWEEYEQNYTLTHTLSKDWDDVADFIAQ
                     IIVSKNEIISSLKEQLELARKD"
     gene            complement(47929..>48554)
                     /locus_tag="ACJFD7_000050"
     CDS             complement(47929..>48554)
                     /locus_tag="ACJFD7_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HGG0858914.1"
                     /translation="YGGYLALLIAKIAPWYVDGVIDNSGVCLPFLACILGREMNQGEF
                     YFEGSGYRLYCFVYKYWNRNMNSSYYFGDENYLIRAILNSNHLQIQSNLNKNTIFVSY
                     HSIQDMGAPVQNKIELYKCYQELGYDATLHLIKDENDIDGRFVKSLEHGLRMTDRALF
                     RKELPLMLEKLQGRKSFMQENSISYPCGNKVFVFKDLEDKFELEMIN"
BASE COUNT        16532 a         8368 c         6735 g        16919 t
ORIGIN      
        1 atgtaaagat tttaaagact acataaaaat ttacaaggac actagaatga ttaatgtgtt
       61 gatgatagaa gatgatcctg actttgcaca attattatct gaatatttag cgcaatttaa
      121 tattaaaatc acaaattttg aaaatcctaa aagtgcttta aatgtgggta ttcaaggcta
      181 tgattgtctg attttagatt taactttacc tggaattgat ggtcttgaag tttgtagaga
      241 aatccgacaa aaaagcaata ttcctattat catctcatcg gctagaggtg acttaagcga
      301 taaagttgtg gggcttcaaa tcggtgctga tgattatcta ccaaagcctt acgatccaaa
      361 agaaatgtat gcaaggatta tgagtcttat tcgtcgcaca aaaagagttg aacacactaa
      421 taatgaaaat attaactctg ctttcaaaat tgatgaaaga agacatgaga tcacctatga
      481 agataaggtt ttaatactta ctcctgctga atttgaaatt ttagaatacc ttatccaaca
      541 acacggatat agtgtttcaa gagaacagct tgtaagtcgc tgtaaaaatc taaaagataa
      601 agattctaaa agccttgatg ttatcatcgg tcgcttaagg gtaaaaatag gagatagttc
      661 aaaatctcca aaacatattt tttctgttag aggtatagga tataaactga taggatgaca
      721 aaaaattatt ctattcatac caaactgatt attttatttg ttgttacttt tttcttggtt
      781 tgtgtgcttt ttatcgttct tttaaaaata gaagggaata cctataatga agaagaaagt
      841 ttaaaacaag aaaatcttat aaaaaattta ctcatctcct atgaaaacac ttcaggtgtt
      901 gaaataggag cttatcttgg aaacagcggt tttaacgcta tacaaaatcc caatcttgta
      961 aaagctataa gaaataatgg acaatcactt tttaaagcag gcggagagct ttgtactctt
     1021 tcttctttaa aatatcatag caatctttat tttgatgttc aatgtaaaga ttttgatggc
     1081 ttgtatgaag aaaatactag tgatagggtt tataatcttt tattgatagg atttttctct
     1141 ttttctttgt tggttgtttt tatgtatttt tctgtattaa aatccttaga acctttaaaa
     1201 aaattaagaa gacaagttgc cgaagttgca aatggggaac aacctgattt tctagactat
     1261 caagaagatg aagtaggcaa gatcgccttt gaatttcaaa aagctttcaa gaaaaaccaa
     1321 gaattaatcc aatcaagaca acttttccta agaacaatca tgcatgagtt aaaaacccct
     1381 ataggaaaag ggagaatcat ttctgaaatg atcaaagaag acagacaaaa agaaagactt
     1441 atcgctatat ttttacgcat ggattctttg atcaatgaat ttgccaaaat cgaaaattta
     1501 ttttcaaaaa actacaactt acactttaaa cctagtcgtt ttagcactat acttgaagaa
     1561 gctaaagaac accttatgat agatgatttt aataaagttg taaaagtcga tataagatat
     1621 gacgctttaa tcaatgttga tatggaaatt ttctctgtaa ttttaaaaaa tcttatcgat
     1681 aatgccttaa aatactcaaa caatggcact tgtgagcttt tttgttgtaa agaatgtttt
     1741 accattaaaa atccaggcaa acctttagca gaacctatag agcattatct tgaagctttt
     1801 acaagagaaa aacacaatca agtcaaaggt atgggactag gactttatat agtttcagag
     1861 gtatgtaaac tgcataattt tgatttgatt tatttttatg atgatggaaa gcattgcttt
     1921 aaaattttct ctggagataa agaaaaataa tggtaaaagg cctggaaaaa ttcaatgaac
     1981 ttgttgaaag ttttgcaaat ttacctacca taggaaaaaa aaccgccata aggcttgctt
     2041 atcacctttg cataaataat caaatcgatg gtatgaaact cgcacacaat atagaaaatg
     2101 ctatccgctt tataaaacct tgtgagcaat gcggtgcttt aagcgaaaat gagctttgcg
     2161 aaatttgtag cgatgaagaa agaaataaaa acattttatg tatagttgaa agcccaaaag
     2221 atatactaac actcgaagag agtcaaagtt acaatgggct atattttgtt ttagatgagt
     2281 taaatgaaga aaaacttgaa aaactaaagc aaatcatact taagctaaat atctctgagc
     2341 tcatttttgc attgacacat agcattaatt ctgatgcaac tatctttttt atagaggata
     2401 aatttaaagg cttaaaccta acttttagta aaatcgctca aggaattcca agtggtgtaa
     2461 atttagaaaa tgtggattta atctctttaa ataaagctat gaattttaga acaaaaattt
     2521 agtaattttt ataagaaata tcggctaatt cttgcaaaga aaaatccgca atcttttcat
     2581 aagtaaaacc ttccttgctt aaaaagtcaa gtaaagtttt ttccatgatt ttagctcctt
     2641 gtataagctc atctgagagc ttaaaactca tcgcttcaat acgctttggc acacaagcta
     2701 agatatgtgt tttaggcaaa tctcctgcaa gttccatgta ttgtaaggtt tgaagcattt
     2761 ctatttcatg ggcacttcca ctccagctaa ttttattagg catagcatca taaggaaaga
     2821 aaaatacatc tcctatactc gcaccttgcg cttctataca gtctaaaacg ataagtctat
     2881 cgcacctagc aatgatatag ctaagctgca aagccaaagt tccaccatca acaaaatcta
     2941 aagtaaattc agaatgagtg aatttgtagt ttttttcaag ttgtttgcaa agatgaacgc
     3001 ctaagccttc atccgcaaac atgatattac ctattccaag gactaagaat ttcaatgctt
     3061 ttcttctttt acaaatttat atccgctaat aatagcatcc atagcaccat ctttaccttt
     3121 tactgcgtta aaaatcgcca tgtaaatatg tactggcaca aaaatcataa ttacccacat
     3181 caaaattcta tgataagttc ttacatcggc caaaccgccc attgcagctt caagcggtct
     3241 taaaatatga tataaaagcc cacctaagcc ctcatggtaa gtatgagtat aaagaataag
     3301 ccctgtaaga atgataccta atatcacaag ataaaagaaa aaataagtta caaattgcaa
     3361 aggattataa acccctttta aatgcggatg ttttcctaag aaaatgtaaa attttacttg
     3421 ttctatccat aatttgatat taaaaatatc ccatacactt ctgcgttctt ttgcgcttac
     3481 cttatcgcag aaaaacaaat atactttaaa aataatacaa gcgattaaaa caaaacccac
     3541 cgcttgatgc actaagcggt attttgcttg cataaaattt acgggttcac cgttactaat
     3601 agggctttgg aacacatagg aaagataata ccctgtgcca ataagaatca ctatagcaat
     3661 agctcttacc cagtgcgtta aacgcaaacc tatgctaaat tcatattcag cttttctttg
     3721 caatttttct tctttgtttt gcatgaaagc ctccttataa attgacattc actttatatt
     3781 cacttagatt attgccctta gtatccatta catgcaccgc acaagcaata caaggatcat
     3841 aagagtgaat ttttctaatg atttcaagtg gttgttttac atcagcgatt ttaagtccta
     3901 tcaaacattg ctcataactt ccacctacgc catttgcgtc ttttggactt gcattccaag
     3961 tagaaggcac cacagcttgc caattttcaa taacaccatt tttaattcta caccaatggc
     4021 ttaatgttcc gcgtggcaca tgccccatat agcgtccttt gtattcttta gaattatcga
     4081 tcacataagg agcacaagta ctctggtcta cttttaaatt ttcaactaaa ttattgaacg
     4141 cttttaaagc attatttgca acgatttttg cttcaataca acgagcagct gttcttccaa
     4201 gtgtactaaa tacagcattt aaaggaagtc ctgtttcttt taagaactca tctactacag
     4261 gaacaacatt ttgattacct ttagcataat ttacaacgat atttgctaaa ggtcctactt
     4321 gcatagggtt tccttcatag cgtggagctt taatccaact atatttaccc ttagtatcaa
     4381 acactttaga atggacatta tttccatgat gatctacgct ttctccatct acaagtcctg
     4441 tataatttgg atttgttttg ccatcataag gatgtaaagg ttcattgtct gcataccaag
     4501 aatgagttgc ctcttcagta atcttatctt cttctacttc ataaaccttg cttaaatctc
     4561 catttttgat aataccactt tcaaaaagcc attcatctct tccgatttgg aattctttaa
     4621 aggtataaag attatttacc cctatatcat ttaaaacact tgcttcatgt gcataagctt
     4681 ttcctgccat cacaagatca ggataatacg cacgattaac aaagtcttgc acttcttgga
     4741 atttaaccat atattcaccc attcttgcag gatcgagtaa atccataacg caagttacac
     4801 caccaacggt taaactttgt ggatgtggat ttttagctcc aaaaatcgcc atacattgag
     4861 caatgattct ttgaattctt aaacattcta gatagtgaga aagaacgatt aaattttgct
     4921 caggacttaa acgataagtt ggatgaccat agtacgcatt agcaaaaggt cctaaatttc
     4981 ctttatctac aaaagtttta agtctttgtt gcacttcaag aagtttatcc aaacctgttg
     5041 cataaggatt tggagtgtat ttaaaagctt catcgcttgc ttttttaaca tcagcattta
     5101 aagcacttac cacatcagcc caatcaagcc catgaagttg ataaaaatgc acaatatgat
     5161 cgtgtaaaaa taaagccgca ttcattaaag ttcttgttaa aagcgcattt aaaggcggag
     5221 taatacccaa agcattttca acagcaacta tacctgcttt ataatgtgaa aaagtacaaa
     5281 ctccgcaaat tctttgcgtc ataaaacccg catctcttgg atcacgccct tttactatgg
     5341 tttcaatacc acgccacaaa gtagagcccg cataagcttc ttttaccaca ttgttatcat
     5401 caacaacaac ttcaactctt aaatgccctt caattcttgt aataggatct acgattattt
     5461 tttgactcat ttttattcct tatctttttg catggaagat ataactgcgt gtgctgctat
     5521 agcaacgcct gtgagtgtaa gcacacctat accgatttta tctgaaacac tatccgcacc
     5581 caaaccaaaa acagtatcaa atttacgact agccataggc tcttcaaaag gtcccatagt
     5641 atcccaaaaa ttaggctcag aacaacctat acaaccatgc cctgcttgaa taggccaaga
     5701 agtgtgctgg ttaaatctct ctcttgagca gttattaaaa gtataaggtc ctttacaacc
     5761 tactttataa agacaaaaac cttgttttgc tccttcatct ccaaaagcat gtacaaattc
     5821 acccgcatca aaatgtccgc gtctttcaca aagatcatga attcttaaac cataagccca
     5881 ttttggtcta ttatacacat caagtgctgg taactcacca aataataaat aatgaagtac
     5941 attacccact atattttttt cacttggagg acagcctgga acattgatca cagttttact
     6001 tgttactttg cttaaaggct gcgcgttgct aggatttggt cttgcggctt gaattcctcc
     6061 aaagctagaa caggttccta tagcaaaaat cgccaaagca ttttcacttg ccatttttga
     6121 aagctcatag cctgtttttc catgtgcacc tatggttaaa aaatgctccg tatcacccat
     6181 agggatacca ccttcaacca ttaaaatgta tttattttta tgcttttgaa tggcattttc
     6241 taaattttct tcagcttgcc aacctgctgc agccatcact gtttcgtgat attctaaaga
     6301 aatataatca aaaatcaaac tatcaatcgt tggagtatca cttcttaaca aactctcact
     6361 acagcctgta cactcagcca tatgaagcca cacaacagga agcctatcag caagctcagc
     6421 agcttttgcc accataggag taaaactcgc tggcaaagcc aaaaatgccg tcatagcacc
     6481 tgcccatttc ataaaatccc ttctagaaaa acctgacttt tctaatgctt ttgtaatact
     6541 atcattgtct ttcaaagaag gaagcttttc aagagtcgat aaacgcgact ctatttgatg
     6601 ataatcaatc attatatttc ctttgtaaca tgaaatttat tctctataat aataaaataa
     6661 aggaagttaa aataaagtta aaaacttact atcataagca aatattagca tcactcttaa
     6721 ttaaagctta atcataagcc ttttttaagt ttgcgaatca aaaatcttgc aggatgaata
     6781 gcgtggatgt attttttttc taaacacaag ggttcattat ttatcaatgc acacaaatac
     6841 cttgccgcta aaacacttgt actaaaaccc cttgacccat gagcaaaatt aaaatacaaa
     6901 ttacaagaca ttttagctgg tttttgctcc ttattttttg tccataataa agctttatat
     6961 tcttctttat aaaacgcttc atcataagca tttccaacta tcataaagcg atcactcgaa
     7021 taagatctaa aacctacttt agaacctatg atttctaatt ttgtattttt atccataaaa
     7081 tcggctatat tttctatatt ttgtttatca tcttcttctt ttgattctaa acttgcatta
     7141 agcctatcat aacttgcacc aattacttgc aaatcatctt ttacagggca aatataagcc
     7201 ttagaagata aaggaaatgg ggtatctaaa aaaggtttta gatgtgtaac ttgacctctt
     7261 actttgctta atttcatctc atcataaaaa acaaagtctt ttgcatctgc acccatagca
     7321 taaatcaaaa ccgcataatc acttttaaca acatcatttt taaattttaa actaaaacac
     7381 ccattttcaa atttataagc ttgaaattca tgattaaaat atatacaagc tttgcttttt
     7441 tcaaaaagat ttttaaccaa tttttttgga aaaatcactc caccctcttc taaaaaagct
     7501 tgattttttg aaattttaaa caaaacattt tctctttgcg tgtcaaatct ttcttgcatt
     7561 aaatcattat gtgcaaactc caccacaccc ttaaattcta aatctaaaat ttgtctataa
     7621 aaacgacttg cttctataaa agaaagctct gaaaactccc ctaaatttac cttaggcttt
     7681 aagattaaag agcttaaaat tccactttca tttccacttg cacccttgcc taattctaaa
     7741 tgtttttcaa aaatatctat ttcaaaacct cttaaactaa gctcataagc taaaacagca
     7801 cttgatatac ctgcaccaat aatagctact tttttatttt ttaaagatga aaatgttctt
     7861 gaaaaatacg cttctttgtc tttaaactca agctcatttt ccaaataagc tttaatcatt
     7921 tctctttttc taaaaccttt ggttttttct actctaaagc catatttttt taaatttttt
     7981 tgcaaaaaac ttgccgaaga aaaggtgcaa atttgtgtat tttttttaga aagccttgcc
     8041 acttcaaaga ttaaattttc atcaaacatt tgcgagtttt tatttggaga aaatccatct
     8101 aaataccaaa catcagcttt aaaattcaat tcttttaaaa cagctatatc ttcaaaaaca
     8161 agatctaaaa aacaatcttc aaaataaaaa cgataaattc cttctttagc cttaggataa
     8221 aattttaaaa attgttctaa aagctcttta aactcttcat aaaatcctag tttttgataa
     8281 atttctctta attgttcttt ttcgatataa aaagcttcta tactgatata aaaaagtttt
     8341 ttaggacgct tagaaggagt agtttctaaa aagcgtttca aagtaagaaa aaaatttaaa
     8401 cctataccaa aaccactctc tgcgataatg aaattttctt gatttttcca ttcaaaagaa
     8461 taagtgtaaa caaatttgct ttcatttaag ccatctttgg aattaaaata aaaatcatca
     8521 aaatccaaag aaaaaggagt attatcctta aaaattagct tagctttttt catcggttat
     8581 tataaaaata actctcaact ccatcggcaa tacccttaac caataaatct tgaaaagctt
     8641 tattggcgat tcttttgcct tcatttggat gtgtaatata gccaatttca atcaaaattg
     8701 caggcatttg cgcacctact aaaacccaaa aaggtgcttc tcttacaccg ccatctacaa
     8761 ttttatactt tttgcgtgtt tgagtgagta tatttttttg tacatcaatg gctagtttat
     8821 ttgaagcaac gattttttca cgatttaaga aatttaaaat actttgtttt gagaaataat
     8881 taatctcttc aaaatcccct tgattttctt tttctgctgc ctttttactt ctttcacttc
     8941 ttgcaggact taaaaagaaa gtttccacgc cttcgctact tttggctttt gtggcatttg
     9001 gtgctgcgtt agcatgtata gaaataaaca aatccgctct tttatcattg gcatatttgg
     9061 ttctatcacg aagattgata aatttatccg aacttctagt ataaagcact ttataaccgc
     9121 gttttttaag ttcatttcca agttttaaag ccgtacttaa aactatatct ttttctttta
     9181 aacttccttt tttatcgctt aaagcaccgc tatcttttcc accatgcccc gcatcgataa
     9241 ccacaagctt tcctgatttg taatttgtat ttaaagtttt actagaactt tgagttgctt
     9301 ttttgtttgc attttgattt gtagtttgta tataaaaacc taaagtgaga ttattattat
     9361 ccaactcctt taaaagttta aattctttag gagcactcaa aaccacacga acggtttttg
     9421 gattgtattg agtaactgta atcacatttt gtccaaaagt aaagcttttt ctattacctt
     9481 ctaacacacc cttaaaactt acaacatatc ggaatttttg atctttggta tcaaatactg
     9541 ctatttcttt ttcatctaaa tcatcgctta aatttaacac cacagcatta gaaattttat
     9601 ccacatctaa aacatataaa ggttcttgat tttctttttc attattggtt tttttatctt
     9661 gtttttttgt ttctaaaact ttggttttaa tttctgtttt ttgatcttgc tttttctctg
     9721 aaattttact aacttgctca gtcttttttt ggctagtagt ttcttttgaa aaaattattt
     9781 tttcttcttt aaaagatata tcaataggaa ttttttcttt agcataaacc actatgcgta
     9841 tggttttggg attaaattgt gaaatcacta aacgatagtc atcaaattta aactcttttt
     9901 tacccccttc taaaacccca tcaaaatcac taataaaacg atagtttcct ttttcgtcta
     9961 aagcaaaact ttttaattga tccttatcca aatctgcatt tagttcaaac tctacacctt
    10021 ggtttgtttt acttgacttt aaaacataaa ttttatcatc gctttttgct ttagaaacga
    10081 tactgttctt tggtgcttgc gaagttttag aatttgtttt ttctgtattt tttatttgtt
    10141 cgttagatga ttttttttca tttttttgaa ctgtttttat aggttcaaaa gttgattttt
    10201 cagtgtcttg agaaatattt tgaaccttaa tatctttaat aacagccttt cttaaagcat
    10261 taatacttgc ttcacttata ccactttctt ttaactcatt agcatatgac ttgtcatcta
    10321 aatttaaagt atttgaactg atgatcaatc tttttaaaat ttcaatttta gttttttcat
    10381 cttcatgaat aacactttgt atataaaggc ttttgagctg atggtgaaat tttacttgca
    10441 cttcactttt agaaccgata aaatttttat caaaatttgc aagttcattt tcataagctc
    10501 caaaaagagt tgtgaaagca aatactaaaa atacaaaaat tttagccatt attcaccatt
    10561 aaccaatttt tccataagtt ctttaacact gataagctta tctaaacgat atccatttac
    10621 acctgtaaag aaaagtcctg tttctttttt gcctgaccac gcatcaaaaa gcctatctgc
    10681 tatacaatac cctactttag tcgcctcttt tccacgtcca caaggcgcta cacaattgct
    10741 tatacaatta atctttggac ccattctttt atctaccaaa tttaaaagat tggttctaac
    10801 tccacgagca ggatagccca caggagattt aataagctct atatcttctt ctttagaagc
    10861 tagcaaaacg cttttaaact cttcactcgc atcacattca aaagttccta tgaaacgcgt
    10921 tcccatttga acaccactag cccctaaaga aatagcattt tctatatctt ttttatccca
    10981 aattccacct gcagcaatca cgggaaaaga cccccaattt ttagcctctt ctaccacagg
    11041 agcgattaat ttttctagct gataatttgg atctaagcac tgctcataag taaaaccttg
    11101 atgacctcca ctttttggcc cttctaaaac cactgcatca ggcaagcgat tgtaacggct
    11161 ttgccatctt ttgcaaataa tttttaaagc ctttgcagat gaaatgatag gcactaaagc
    11221 cacatcagga aaatctgcag taaattcagg taaatttgta ggaagtccag cacctgaaac
    11281 aatcacatta aaaccaacct cacaagcatc gcgtgctatt cttgcataat cattacttgc
    11341 acataagata ttacacccca aaggtgcatc accacaaact tttcttgcat tattaatcaa
    11401 agcttgcaaa cccttgcgtg agtaaaaatt ttcacttcca taaggcttag cgtttaattc
    11461 tttacttgca tactttcttt cttcataata tcctgttccc acagaagaaa taatcccaag
    11521 tccaccattt aaagaaactg cagaagctaa tctatcccag cttatgccta gtcccattcc
    11581 tccttgaaaa atgggatatt ttatagtatg ttttcctatt tgtaagggtt gtaaattcat
    11641 tcttttacct ttaattttgc aaattttctt ttacctattt gtaagatgta ttctccttgt
    11701 tctaaataca tttgctcgtc gctaactttt tgagaattta cacttactgc attagcactg
    11761 atgcttcttc ttgccgcaga agtagaactt tccaaaccac attcaaccaa agccttagca
    11821 agccaaattt ttccttgtat ttcaaactca gccatatcac ttggcaaagc attttgagaa
    11881 tgaattctat caaattcaga cttagcatta ttagcctctt ctttggagtg aaaacgctct
    11941 gtaatctcta aagctaaatt ttctttagct tttttaggat gtaaattgcc ttgttctata
    12001 tcttttttta tttgcgcaat ttcttctaga cttttttgac ttaaaagttc ataatatcta
    12061 aacatcaatt catcactaat acttaaaatt ttagcataca tatcattagc tttttctgta
    12121 acaccaatgt aattatttaa actcttactc attttgttta caccgtctaa accttcgagt
    12181 aaaggcatca taatcacagc ttgttctttt cctatgttat aaactctttg aagctgtctt
    12241 cccatcaaaa gattaaattt ttgatccgtt ccacccattt caatatcgct ttttaaagcc
    12301 acactatcat atccttgaag taagggatat aaaaactcac aaatcgaaat aggactttgc
    12361 tctttaaatc tcttggtaaa atcgtcacgc tcaagcattc tagctacact aaaagttgaa
    12421 gtaagctcta ctatacccgc ggctccaagt tcattaagcc aagtagaatt aaacttaatc
    12481 tgtgtttttt ctttatccaa aaccttaaaa acctgcgttt cataagtttt agcattgatt
    12541 aaaacttgct ctttatccag ctttttacgc gttgcacttt ttccacttgg atcgccaatt
    12601 tgtcctgtaa aatctccaat caaaaactgc acaatagctc catgtttttg caaaaaagcc
    12661 atttttgtta aaaccacgct atggcctaaa tgtaaatcag gcgctgtagg atcaaaccct
    12721 gcctttataa agaaattttc acccttttca taataatttt taattaaatt ttctattctt
    12781 tcttcatcaa taagctctgc acaaccacgc ttaacttctg ctaatatttt ttttatatcc
    12841 ataataaacc tttttaacct tctttataag catcatttaa agatgtaaaa tctaaaattt
    12901 tacaacgaga ttttaaccta tccttgacac tatctggatt gatattatca ggaatttcca
    12961 ttgtaatctc aaaataatct accgccgaat ttaaatcact tgataaatta attgttaata
    13021 gatttatctg cattttagct aaaaatgcca aaaattccgc taaaacacct tttttatttt
    13081 ccaaagaaaa aatcaattta taagatttag ggatgttaga atcccatttt ataaatacca
    13141 tatcttgatt attatctatc attttatcag ctctatcgca aagcttatga tggacaatag
    13201 cgttaccacc tttaacaaaa gctaaaacag catcacctct ttttggatgg cagcaaaaat
    13261 caaaatccac attagcgatt ttatggttac aatataaagt aaaatttcct attttttgtt
    13321 ctttaatctc atatttatca aaccaatatg acttcttggc gtatttttta agaccattaa
    13381 ctatatcttt caaataagca ctatctgttg ctacttgtct aatacgtctg gctaaatttt
    13441 ctttttctat ccaagtttca attctgtttt tatcaactcc aaaaataaaa cttaacatat
    13501 taatagaact tgctagatta atctctctga ttttttgctt acaaaattcc cttatacttg
    13561 cttttgcttt tcctgtttta acactatcta tccaagaaca gcgataaaat ttatcattgc
    13621 tagtaaccac tcgcacaata tcgccatttt taagctcggt taacaaaggc actttaatac
    13681 gatttacata agcacttttt gcatgaagcc ctactttggt atgcacttca taagcaaaat
    13741 caagaaccgt tgcaccacga ggtaaagtga aaatttctcc cttaggagaa taaactgcga
    13801 catcttcaac ataaagacta tctttagcat attcataaag ttcaatagca ttataatctt
    13861 ctgcattttc aagattgttt atactttgca ttgaaatatc tgtaagccaa tcaagacgag
    13921 gcgcaaccac actgccatct tctttatatt tccaatgcgc tgctatacca aattccgcaa
    13981 ttttatgcat atcaaaagtt cgaatttgtg cttctataat acttttagca tcaaaaagtg
    14041 tggtatgtat ggtttgataa ccattttgtt taggcaaggc tatataatcc ttaaaacgcg
    14101 aaaccaaggg attaaaatgt gtatgtaaaa ttcccaaagc taaataacaa tcacttactt
    14161 tttcaaccaa aattcttacc ccaagcaaat caagaacttc ttcaatacca atgccttttc
    14221 tttgcatttt aagataaata gaatagctat gtttaatgcg tttttgaatt tcaaaactac
    14281 cttgtctaaa gccattgctc aaaaataaaa gttcgatttt ggaaataaat tcatttaaac
    14341 ctaattgcat ttcttgatta ttagagttga tataattgtc aataagctta tactcatctg
    14401 gcataagata tttaaaacta agatcttcca aataattttt tatgcttgaa ataccaagtc
    14461 tatgggctat tggggcatat acaactaaag tttcttcgct gattcttttt tgcttatctt
    14521 ctcttagaat atcaagagta agcatattat gcagcctatc gcataacttc acaatcaaaa
    14581 ccccaacatc ttcaatgctt gctaaaagca tatttctgaa agtcaaggct gatttagtta
    14641 aacttttttt agattttgat gaaatgagat tatcttctct aatttctata attttagtaa
    14701 gccctaaaac aagttttaaa acctcagaac caaactgctc tctaagttct tcttcagtac
    14761 agtttgtatc ttcgatcaca tcatgcaata aagcagctaa aatattgctt ttattttcac
    14821 ttaaaaatcc aaccagtgtt gctactaaaa taggatgtac cgcataaggc tctccacttt
    14881 ttctaaactg cccttcatgg caaaatatac agtaatctac cgctttttca agaatggcat
    14941 catggccaca aatttcgaaa agcaaagcct tagcagcttc taaatcttta caatttttta
    15001 cattatcgat taattgttca agcaataatt cttcatcgat tggtttcaac taaaccctct
    15061 aaagtgattt tattttctgc aatttcatat aaagctatat ctgcaagttt atttttattt
    15121 ttatcaaagt ctaccaaagg ggttgctcca tttgccaatt gttccgctct ttttgctacc
    15181 actaaagaaa ggcgatatct atcattaccc attttttcca aagcttttgc cgctacttct
    15241 tctattcttt tatccataat tttctcctta attattttta acgattgaac aaaggctagt
    15301 atcaccttgt ataattttaa gtaaattacc ctcttcaaac atattacaaa ccacaatagg
    15361 aagtttgtta tctttagcta aagctatagc tgtatcatcc atcactttaa tattatcttg
    15421 catagcctca tcataactca aagtatttaa aaatactgca tcatcaaatt gttttggatc
    15481 tttatcataa actccattaa cttttgtagc ttttattacc atatctgcat caatttccac
    15541 agctcttaaa atagctgttg tatccgtagt aaaataaggg tttccagtac ctgcagcaaa
    15601 aaccacaaca cgaccctttt ctaagtgtct ttgcgctctt ctcataatat aagtttcaca
    15661 aaatgcttcc atctgaatgg cgctttgaac cctaacttca agtccagagc tttccaaagc
    15721 ttcttgtata gcaatagcat tgataaccgt agcaagcatc cccatatgat ctccacttgt
    15781 ccttttaatc aatccgccct tagcagcact tactccgcga ataatattac caccgcctat
    15841 aactatgcct acttctattt gattttttat aagttcttta atctctgaag ctatgaattt
    15901 taaaatagaa ttttctatac caaagccatt ttcacctgct aaagcctctc ctgaaaattt
    15961 tactaaaact ctttttctct cttgcattat ttctccttat ttaacttgaa attatatttt
    16021 aaattccatt aaatttagct aatttaagct aatgagttcc aaaggattga tatgaaaatt
    16081 tttttgagtt acttcaaaag taagatcatt ttttattcta cccactacgg cacctttttt
    16141 aatattctta ccaactttaa tattaggagc aatcttatct aaatgtgcgt atattgtatg
    16201 tatgccatta tcatgttcaa caataacaac tcgagctagc atactagtat ctttagcaaa
    16261 aactattttt ccatctagca catttttaac aactgcatcg cttttattgc ttcttaaaac
    16321 tacattctcg ttaaaaattt taagattgta aacaggatca acataatttc caaatttttg
    16381 cttcacagta aaagaatcca atggagctat ggtttttttt cctgtgtaac gcttgactga
    16441 acttccttga tagcttgaac ctaattgcct tatttgttga ttatttttta ctattttagt
    16501 atcatttttg tttaaatttg caccttcttt attattaata atttttaatt gatttaatgt
    16561 ttttctaagc tcttcttgct gagcttgtaa gtcatcgagt ttttttgcat atatggttcg
    16621 atctgttttt tgtttattaa tttcgctaat ttgtttttgt tttaaacttt gaagcttggc
    16681 taattgagcg ttgtaatcct taagactttc attgattttc ttaatctgag cttgtttatc
    16741 atcaataagc ctgcttactc cctcataatc tttagaaatt ttaaaaattt cttcatttaa
    16801 aactttgttt aaacttccta aaatttcaaa agccataaaa ctttcttcac tttcaatata
    16861 gccttgaggg ataggtaaat cataagcaaa atctttagcc attaaagata taagcttacc
    16921 ttccatattt gatttacttt taagcaaatc ttcattttgg cttgtaaggg tgtttaactc
    16981 ttgattttga gccttagcac ttgcttcaag cttagaagtt tgtgaattta agctttcaat
    17041 ttgcaaactt agatctttca aacttttttc accatttaaa atatcgctag ccaaatcttc
    17101 aagtttttta tttaactgtt cttgtatgcg tttattttct tctaaacttt ttgttttttc
    17161 atttatagcg tttgctaaac ttatatcaac aaacaaaaaa aaacaaaaaa agataagaat
    17221 attttttctc atcttttaac cttaaacata accgtattta cacacaacaa gcaaataaac
    17281 aaagtagcta aaaaaattaa agtcaaatgt aaaataaaat taataggtgg aaaaataata
    17341 tctacagcct ttaaactttc ttggataata gaaagatcaa aaatttgggt aaaaaaggca
    17401 agtaaaataa caaaagcaat aaaacaatca accacaacca ccttataaag cataaaagat
    17461 ctaaaccaaa acggagctcc aaataaacac ataatttcaa tacgatcggt atgttcataa
    17521 agccaaattc tcatctgttt taaaaacaaa acaaaggcaa gtaaaataat gataaacaaa
    17581 aataaccaaa aaacaaattt catcaaaata agcaaagagt atatcttatc atgggttttg
    17641 gaaaaagttt caaccttact aacacctaca atatttaaaa gttgattttt aatcaaattt
    17701 agttcatttt gatcgggtaa agaatttaat tttaaagtat aaaattttgg cagagaatct
    17761 tttaaaactt tcaaattctt ttcagaaaca tcatttttca aacgatcaat taaatcctta
    17821 ggatctaaag attcaagtcc agcaaaaaat ggtacttttg tttttactac attctgatca
    17881 agttcagttt tgctgacaac tataatatta taatctttat taacaagttc ttcataatgc
    17941 tttaaagttg catttgtaac caaaataaat tcaaaagcaa acatcataaa aagcaaaggt
    18001 aaaattaaag ataaatgtgt tttaaaaaat ttcattcatt tttccatttt ctatattaaa
    18061 acgacgataa tccactctta aattactagg aattctatgt gttaccacta taacacaagt
    18121 tcctaaaagc tctctagcag actttaaaag agtccatata atatcagaag aatactcgtc
    18181 caaatttccc gttggctcat cgcaaagcaa aagctttgga ttatgagcta aagccctagc
    18241 catagcgacg cgttgttgct caccaccgct aagttgatta ggcaatttat ctgctttaaa
    18301 agttaaattt acatgcttta aaagcttagt agcttgatca tggcatactt ttttgctata
    18361 acctttaatc attaaaggca acataacatt tttttcaaca ctatattctt gtacaagttt
    18421 ataatcttga aaaataatcc ctattctttg acgcaatttt aaaagttcta aatttccaat
    18481 tttattcatc aaagatccac atacttcaag cttaccagaa ataggttcta aatctccata
    18541 aaaagacttt aaaagcgtac tcttaccact cccactttta cccgtaataa aaacaaaatc
    18601 atcatcctta aaagcaaaac tcgcttcttt aataactagt tcatcataac ctaaagtaag
    18661 tttatttgct tggattaaat taggcatcct ttttccttaa tttccctttt taaattttta
    18721 aattatgctt tatttttgct taattttcaa gaaaaattat attttaaact gaacttttaa
    18781 aatttctttt aattcattta tcgctttaat attttcttga attttaaatg gttctttaaa
    18841 agcaaaatcg atcgttttat caagatgtaa ataacaatgt tcaggcttat taaaagctcc
    18901 aaaagcaacc tttaaaagca aattctcatc ttgtttgtag atgctttcaa aatgcaagaa
    18961 aaaatcatct ttttttatag taatattttt aaagttctgc tctatttttt tcaaatcttc
    19021 tttagaaaat tcaaccgatg agagattaaa ttcatttaac tcatagtttc tacactcttg
    19081 gttaaaattc cacacccaaa gatcatatat atttttttct tgctttttcc atctatcttc
    19141 atatttgctt gaaatttcta aattttcatt ttttctaaga ctaaattttg gaacaggaaa
    19201 agtcaaaaat tgttctagag taaaattaaa atactcaaaa ctatctgttc taagttcaaa
    19261 acgaccgttt tgggttaaaa ccctagcaca ttctttgcaa aaatctttcc caataactcg
    19321 cctatgaggc tttttgtccc aaggaacagg aaaatgtaga aaaatctttt caactgattt
    19381 tgattttaat acactcaata acaatctcgc atcactttgg attagcaaaa tattatttac
    19441 attttgtgct ttagcaagtt tagccacttg agttaaagct gggttgtaaa tttccacccc
    19501 taaaattaaa acatttggat tttcttttgc ttgataaagc aaatgtcttc ctgatccaaa
    19561 gcctatttct atataaattt taccttgaag cttagacaaa agctcatcaa aattatcaac
    19621 gataaatggt gttttttcaa ttaaagcatt gtttttaagt ccaaaagctt cattgataat
    19681 atcctcacaa aaatcttctt taaagatttt taaagccttt tgcaaataac ctattttaga
    19741 aggttttgta tgtttatcgc ctttaatcac aaaaccattt tgtgcttttt taatctgcag
    19801 aaaaaaactc tcttcttgaa cctttgtata aataagacta acattatcat tcttagcaag
    19861 ccaaagaaat tcaacatcat ccttgctaca aggcagattt atttctttga tctttttgct
    19921 tttaaaattt ggcactactg agccgcctta actttgtttg aaggttctga acgaagccca
    19981 gctgaatcaa tagcaataac ttcataacta tattccaccc ctggcaaagc ttttacatct
    20041 tttaatcgct tttctttaat gcctttaaaa actgcatttt gctccccgcc atagcgtctt
    20101 acttcatact caacagctct agtatcatta tcactccatt ctaaatttat cccttcgctt
    20161 gtactttgag ccaaaataat actaggagcc aaagggttgc ctaaagtttt accttctaca
    20221 ccatcttttg gcataggact ttcaagacca tctttatcca ccattgttac tttataatat
    20281 ttgcttttac ctgctccttc tactatatcc tcataagaat ttttatcagt ctttgccaaa
    20341 acactaaaag gaaggaagct tgagctcgta gaataaactt tataataaga aaaatcttca
    20401 tacgtaggag catcccaagt taaaatgatt ttactagaac catctgtgct agcacttaaa
    20461 tgctcaactt gaggaggtaa agccttgctt gtagaactta taacttgact tgacccactc
    20521 tttatcccat taaaactcac agcaataatt ctataacttg aattttcatt aggctttaaa
    20581 tcactatcga tgtattcagc gtttaaacga ttttttactt ctgcaatttt tttaaattct
    20641 ttatcatcac ctttggttct ttcaataata taagaatcaa ccctaaaatc aggatgcgga
    20701 cgccaaataa gtttaatacg attaggcaaa ttagtcacag cttgaacaaa aggaacagct
    20761 tcaagtcttg gagctgtgct cacttctata accttgccat cttctgaaat ttgtccttgc
    20821 tcattaaagc ttttcatcat ataacgatac ttagtaccag gctctaattt agtatctaca
    20881 taatgagttt gaaacttatc tttaatagtg cctacaagtt taaaatcagg attttcatca
    20941 ctagaacgat acaaataaaa tcctttaata ttttcattat ataaaggctc ccattcaaaa
    21001 gcaatattac tcatatcact aagacttttt aaactttcaa cctttggcaa gctttcattt
    21061 acagcaggct ctttacttga agctagcgaa ttcatttgcg aaacactaca agcgttaagc
    21121 aaaagagtta aaaaactcaa gtaaaaactc aagcgaaatc ttttcatcat tctctcctaa
    21181 attaatttgt tcaaacataa tatttttaaa atcttccatc aaaggtgctt taacaaaaat
    21241 ttgttctttg gtttttggat ggataaaata caaaaaataa gcatgtaaca ttatcctaca
    21301 atcatactta cccttataac catacaaact atcacctaaa atatagcgat ttaaactagc
    21361 caaatgcgct ctaatttgat gagttcttcc tgtaaaaagc ttagcagcca tcaaagttaa
    21421 attttcagtt tttactacat ttataaaagc tgattttgcg tttttgctga atttattttc
    21481 cttatctatg gctatttttt taatagcatt agaaggcgaa cgcattaaaa atttttctac
    21541 tataatttta tcttctttta gtggcaaatc aattaacgca aggtaaattc ttcccatgct
    21601 tttatctgca agctgttcac ttaatttttg atgggtgaaa ttatttttcg ctattagtat
    21661 agatccgctt gtatctttat ctaatctatg gacaagacca gctcttatct ctcctcctaa
    21721 atttgataaa gtatattttt tttctattaa ccaatccacc aaagtggcat ttttaacgct
    21781 acttgctcca tgaacgacta aatttgaagg tttatttaaa acaagcaagt cttcatcttc
    21841 gtataacaca tcaatatcaa aatccacttc aaactgaggt tttatctcat tgcaaagctt
    21901 taaacttgca atagaaacaa tatcaccatt tttaagctta aatgaatttt tatcttgaat
    21961 tttatcatta acctgtacac aatctttttc tataagtaaa gcaacttgat tgcgactttg
    22021 gtttaatttt ttagccaaaa atacatcaag ccttgaattt tcatctacta aaaaagtttg
    22081 cattttttcc ttagaggttt tgataaattt aaaattttag tttataatta tagctttata
    22141 ttaccaactg aaggcaaatt ttgtttagat tagatagaag aattttaact cattttgact
    22201 atatgcaacc cattttattt ttacccataa ttcttatttc atttttctta atctttgaag
    22261 ctaatccttt tttagcagaa aaacagtttg tttatgcctg tgtgggattg tttgctttta
    22321 tggttttttt cttctttccc ataaggaaat ttatttggat tattcctgtt gcttattgga
    22381 ttaatatttt tttattgcta agcgtagata tttttggggt tgaaaaatta ggtgctaaaa
    22441 gatggcttga aattcctttt actcacttta ctatacaacc ttctgaaatt tttaaaccta
    22501 gttttatttt aatgcttgcc tatcttattt atcaaaatcc tcctccaaaa aatggataca
    22561 aacttaaaca attcatcaaa cttagctttt acatcatctt gccttttttg ctaattgcaa
    22621 aagaacctga tttaggaagt gctatggttt tactacttgt tggttttgga gtgcttttta
    22681 tcatgggagt tcattataaa atttggttaa gtattgttat agctataagt gttagctctc
    22741 ctattattta tacacatctt ttaaaaccct accaaaagca aagaattcat gattttattt
    22801 cagaaaaacc aagttatcaa gtagcccaat caatgatagc tattggaaat ggtggtttaa
    22861 ccggaaaatc tcaagatgaa gctacgcaaa ctcattttaa atttttacct atttcaacta
    22921 gtgattttat tttcgcttac atgatagaaa gatttggatt tattggggga ttgacattaa
    22981 ttatatttta tattttactt atttttcatc tacttagttt aaattataaa cttaaagatg
    23041 attattttgc tagagttgct attaattgtg ttgcattatt tatttttatt tatgcggcag
    23101 taaatatttc aatgactata ggttttgcac cagtagttgg gatccctttg ccttttttta
    23161 gttatggtgg aagttctttt actattttta tgattttttt tggaatttta cagcatttaa
    23221 tcacttttag atatttttgg acggatataa aggctaaata aaatattttt aagcattaat
    23281 aagatataat tttatctttt aattcaactt aggcggattt atagctcagt tggttagagc
    23341 aaccggctca taaccggttg gtcgcaggtt cgagtcctgc taaatccacc attctacata
    23401 taagctatag actctttctt taaaaaataa cttttagttc tttaaatatt tcaatcttat
    23461 ataaaaaaag tatgtgatgt gattttttga aagataaagt ggtggttaga ggcagaatcg
    23521 aactgccgac acgcagattt tcagtctgct gctctaccga ctgagctatc caaccacaat
    23581 gtttgataaa gtaaaaatgt aattgtatct ttttttcttt aatttaagtt taaatacaaa
    23641 aataaaattt tatttccctt aaagttttaa taagatagaa tacccgcttt agatcattat
    23701 caaatggaaa ttttttgaaa caatttggac tagatagacg aacttttaaa attttactag
    23761 ctggttatat tattattgca ttgtttgggg ctttattgct acattcaagc tgggcacata
    23821 caactcctat tgatttttta gatgcctttt ttacaagcac atctgctgtt agtatgacag
    23881 gattagtagt taagaacact gcggttgatt ttaccttagc aggacaaatt attatcttag
    23941 ctttggtgca aattggaggc ttgggatata tgggtatagg tttatttgtt tatatactca
    24001 tacgcaaaaa agttggtttt agtgcaagaa atttactaaa agagtcttta ttttatccat
    24061 caatggatgg tttatttaaa ttttttaaaa aggttttgct gttcattttt actatagaat
    24121 tgataggtgc tatacttctc accatgcgtt ttacccttga aatgaatttt aagaaagctt
    24181 tatggtttgg aatttttcat tctattagcg cttttaataa ttctggattt actatatttg
    24241 aacatggact tatagcttat aaacatgata tagcaattaa tcttattatc acttctttga
    24301 ttattattgg agggcttgga tattttgttt tggttgaatt atactttttt caaagaaaaa
    24361 aattgcaaaa tttaagccta catacaaaaa tggttgttgt tgcaagtatt tttcttattt
    24421 tctcttcaac gcttattatt tttgcttttg aatactcaaa tcctcaaact ataggacatt
    24481 tttcattttt tgataaaatt ttaagctcat attttatcgc tattaattac cgcacagcag
    24541 gatttaatac cttagatatg ggacatttgc atgatgcaag cttatttttt ggatcattgt
    24601 ttatggttat tggtggtgca ccaggtggaa cagctggggg tatgaaagta acaactgtaa
    24661 tggttttatt gctctatgct tattggagta tccgcgatgg aagagttaga atttttggac
    24721 atgaaattcc aagagaaact atatctaaag cttttattat agctgtaggt tcagctgttt
    24781 atatagtaat agctgttatt ttgctttcct tgctagagtc aaaatttgat tttatagcct
    24841 tgctttttga aacttcttcg gcttttgcaa ccgtaggaat ttcagtagga aatggtggaa
    24901 ctttatcttt atgcgctttg tttagtgatc ctagcaaggt gattatcatc attatgatgc
    24961 taagtggtag gataggtgtt tttgcttttt tactctcggt attcaaacaa gacaaagcta
    25021 ttcatttaaa attccctgaa ggaaaggtta atttataaag gtaaaatcgt gaaaaatctt
    25081 aattatggaa ttataggact tggaaaattt ggatcagttg tagcagatga actcattgct
    25141 ggaggtcata ctgttatcgt tgcggataaa gatgaggaag ctttaaaaag tatacaaaat
    25201 cctccaagct atgcttatat tttagattct acaaatattt cagccctaaa agaagcaggc
    25261 tttcatgatg ttgaagttgt tattgttagc ataggagaaa atgttgaaaa atcaatcctt
    25321 actcttatgg cgcttaaaga tataggtgtt aaaaatatca ttgctaaagc aacctctaat
    25381 atccatggtc aaattctttc taagttaggt gcaacaaagg ttatttatcc tgaaaaagaa
    25441 agtgctaaaa gactagtaaa agaattttta actaaagatg ctgattatga agtttttgat
    25501 ctttcagcaa atactatacg agctattaag atcaatatag atgaaaaatt agcaggaaat
    25561 tctttaaaac atgtagcaca aaatatgaaa gtgatttctt ataaaaaatt aaatagtgac
    25621 tgggaaatac tacctgattt agaaaccacg acagtttata gtggagatgt tgtaatactc
    25681 cttggaacag ttaaagaact tagagaattt gaacactaag caagatttaa agccttacaa
    25741 gcctttacaa aacgctttaa ggctgttttt tctttggtag aaattttatg atatataact
    25801 tcatctaaat aatatctaac atcttttata tctaaatccc ttgttttggc ataattttgc
    25861 agtatataat aaggaatttt aatctttgtt tttggaaatt ttttcaaaat ttgtttatat
    25921 aaagcttttt tttgcacaca agaaaatcta gcaaaaacaa aaggcgatcc tgttttttcg
    25981 tgccattttg cacataaatc gatatattta gaaggatctt ttagataaag ctttaaagcc
    26041 ttatcaccta taattacttt tccatcttgt tttaatactt tagccagagc gtttgaagtt
    26101 gctgaacttg gatctttggc atttgatgta tttttttcta ctaatacact taaaactctt
    26161 ttattagcac aaatacccaa atctaaattt ttatattttt ttctagcact ttctatgctt
    26221 gaaatgatag ctgcatcaat tcttctataa aataaatctt tatttagctt acttggaact
    26281 ccttttttat actccatact tgctttataa ccattaggta ggggatattt cttaagatat
    26341 atatgtaaag gtaaaagatt aatataatca atttttccaa aaatcatctc ttttaaagag
    26401 tgttaaacac tctatctcct gcatctccaa gccctgggat aatataacct ttttcattta
    26461 aaccttcatc aatacaagcc acaaaaactt ctacatcatc atgcatttgg ctaaattttt
    26521 tcaaaccttg tggagcagca agtatggata taaattttat ttttttaact ccttggcttt
    26581 ttaaaaaatt acaagcatct atagcagtcc cacctgtaga aaacatagga tctataacaa
    26641 tagcagtgcg tttttttgca tctttgggaa gtttttgaaa ataaaaatcc gcctttaaag
    26701 tttcttcatt tctcacaaac cccaaaaacc caacacttgc atcaggaatc atcttaaaaa
    26761 cactttcaag cattcctaat gcagctctta aaataggaca aatcataatc ttttcatcaa
    26821 gtttttttac tatagttttt tgtataggtg ttgaaatttc aatttctttt aaagaaaaat
    26881 ctttactcgc ttcaaaaagc aaaaaagatg aaatttcatc gattaacata cgaaattgaa
    26941 agggctttgt ctctttagcc cttaaaattc ctaatttatg ttcgatcaat ggatgattga
    27001 tacaatgaat atttttcatt ttaagctttc aaaataagct ttctcatcaa aatttttcac
    27061 cttagccaca ccatctttta ccgcagctgc tgctacagct gtacttactg cagcttttac
    27121 tctttcatca aaaggttttg gtataacata atctcttcca aattctaaag tgcttaaatt
    27181 ataagctttt ttaaccgcat cgcttacagg aagttttgca agatctgcta atgctttagc
    27241 agccgctact ttcatatttt cagtgatttt acttgcacgc acatctaaag ccccacggaa
    27301 aataaaagga aaacctaaaa cattattgat ttgatttgga taatcacttc ttcctgttcc
    27361 tacaatcgca tcttttctaa gtctagctac atcttcaggc atcacttcag gaataggatt
    27421 tgccaaagca aaaatcacag gatcttttgc catgcttaaa accatttcat catcaagaat
    27481 ttttggtgca ctaagtccta ggaaaacatc agctcctttt aaaacttctt ttaaagtctt
    27541 ttccttagaa tcaacagtaa attcaagctt ttgaggagtt aaatcatttc tatctttaga
    27601 aatcactcct ttgctatcta ctaaaataat attttcgacc cctaaatttc tatacatttt
    27661 agcacttgct atacctgcgg cacctgcacc acttacaact actttgatgt ctttaaattt
    27721 tttaccactt atttccatag cattcataag tcccgcagtt gaaataatag ccgttccatg
    27781 ttgatcatca tgcattacag gaattcctaa atcttgcaaa gccgcttcaa tttcaaaaca
    27841 ttttggcgca gcaatatctt ctaaattgat cccgcccaca gttggagcca aagacttgca
    27901 aaaatttaca atctcttcta tactatgaac atcaatttct atatcataag cattgacatt
    27961 tgcaaatttt ttaaacaaac aagccttacc ttccataaca ggttttgaag cctgtgctcc
    28021 tatgtttcca agtcctaaaa cagcagaacc atcactaact atagctacta aattagcctt
    28081 atttgtataa gtataagcaa gctcattatc tttagcgatt tcaaggcaag gttctgcaac
    28141 tcctgggcta tacgccaaag atagatcatg gcttgtagcc attggcttac ttggtacaat
    28201 atcaattttc ccacctaaat ggtattttaa agcttcttct tttaaattca ttttattttc
    28261 ctctaacttt taaaaaattt tctattcttt ttttgcactc atcaacctct aaaaattcta
    28321 atacttcaaa aatactagga cttaccgcac tccctgttaa agctatgcgt ataggctgag
    28381 ccaaatcttt taactttgct tctttttttt ctaaaaaatc atttgtaaaa tcttcaaaat
    28441 ctttacctgt tttttgatct ttaagtgtat tagcaaatgc ttggagcaat tctaaattat
    28501 ttttgttaat aaatttttgt actgcatttt catcataatt ttgcggcgca ttaactatac
    28561 tttttgcacc attgataata tcatgcaagg tttttgcacg ctctcttaat aaatcaagta
    28621 aaaatcctgc cttttcataa acagataaat caaagccaag atccttaagc tgacggttaa
    28681 tctcttcaaa aggcaaagtt ttaatgtaat gagcgttaag ccattcaagc tttttaacat
    28741 tataacaaga tgcgctttta ttaatatgat aagggtcaaa aagttttttc aaatcttcta
    28801 atgaaaaaac ctcatcatca ccatggctcc aacctaaacg cacaagaaaa ttaagcaaag
    28861 cttgaggtaa aattcccatt tctttgtatt ccataacatc agttgcccca tgtctttttg
    28921 aaagcttttt accatcttct ccatgtatca tagccacatg aaaaaattta ggaattttaa
    28981 aacccaatgc ctcataaagc acaatttgtt taggagtatt tgaaagatga tcatctccgc
    29041 gaatcacatc acttaccccc attaaagcat catcaataac aacagtaaaa ttataagttg
    29101 gagttccatc acttcttgca atgataaaat catccattat atcctctgct ttaaatctca
    29161 cctcgccttt aaccccatct tcaaaaacaa tctcgccact ttgaggcgct ttaatacgca
    29221 caacaggttc tataccctga ggtggcgtgc ctgtaaattc tctatatttt ccatcatatc
    29281 ttgggcgttc tttggcggct tcttgcttgg cacgcaattc ttctaattct tctttactca
    29341 tataacaata atacgccttg ccttcatcta aaagcttttt gacatattct ttataaagat
    29401 caaaacgctc tgattggtaa gttacttctc catcatgttc taaaccgcac catttaaaag
    29461 cttcgataat tgctttagta gcttctttgg aatttctttt taaatccgta tcttcaatac
    29521 gaagtaaaaa atttccacca ttttttctag cgtataaata attataaaga gctgttctaa
    29581 gtccacctat gtgcaaatac cctgttgggc ttggagcaaa acgcgttgta agtttttcgt
    29641 gcattttttg ccttttctta aatttttatt gatataatgc gatatttata cttaaataaa
    29701 ggtttgaaat gaaaaaaatt ttattaagtt ttgcattttt tgcaagttta gctagtgcaa
    29761 ataccattaa tgctatagct gtagttgtag acaaagagcc tatcacaact tatgatatag
    29821 atcaaactat gaaagcactt aaaattgata gaaataaagc tttaggcgta ctcatcaatg
    29881 aaaaaatgga aatttcacaa atgaaacaac taggtattgt agtcaatgat ctagagcttg
    29941 atgatgctat aaataaaatg cttgctcaaa acaaaacgac tttaaatgct ttcaaagcaa
    30001 atttaaaatc caaaaatcaa agctatgaac aatttcgtgc aaattttaaa aaagatttag
    30061 aaaaaagaaa gctttatgaa aaaatcgcaa gtatggcaaa aactgatttt agtgatgatg
    30121 gagcaaaaaa atttttcgaa caaaataaag ataaattcac tttttataca caaattaatg
    30181 caaatattta tctatcaaac aatcctcaaa ctttagaaaa tatcaaaaat acaaaaaaaa
    30241 caatccttaa accacaaaat gcatctttaa acacaagtaa tgccgatcca agacttttag
    30301 ggcttttatc acaaattcct gttggaggct tttcccctgt tttaaatgga aaaaatggct
    30361 atgaactcta tgaagttaaa agcaaagatg gggcacaaac tcctgaatat gaacaagtta
    30421 aaaatgaagt tttaaacgct tatgtaagcg aacaaagaca aaatttcata caggattatt
    30481 ttgataaact ccgctctaaa atcaatatag aatatttaag ataaaaatta caattaaaat
    30541 ttccctttaa tagggaaatt ttaatgtctt gcaagataat ttgtatcgta attattatta
    30601 ataaaatcag gattttccat catagaaaga tgaaaatctt tggttgtttt tatcccactt
    30661 ataagcaact catctaaagc tactttcatt tttgcaatag ctttattacg atcttctgcc
    30721 caaactacaa gtttgcctat catagaatca taataaggag gcacgctata gtcttgataa
    30781 caatgacttt ccattctgac attgcgtcct gcgggtggaa tgtatttagt aatcttacct
    30841 ggacttggca agaaagtttt ggaatcttcg gctgtgattc tacattctat agaatgccca
    30901 tttaatttaa tactttcttg agatggtaaa gcataacctt ctgctacttt aatcatttgt
    30961 tctatgatat caatcccact taccatttca cttacacagt gttcaacttg caaacgcgta
    31021 ttcatttcta taaaataaaa atccaaattt ttatctacca aaaactcaaa agttcccgca
    31081 ccttcatatc ctatagcttt agctgcctta atagcagttt catgaagtct agtgcgtgtt
    31141 ttttcatcaa gcaaaatcgc aggggattct tctataagtt tttgatggcg tctttgcata
    31201 gaacaatctc tttcgcccac atgaatcaca ttgccaaaac tatctcctat aacctgtact
    31261 tctatatggc gtggattttg tatgtatttt tccatataca tagttccatc gccaaatgct
    31321 gtcatagcct cgctttcagc cgaccaatac gctttttcaa gatctttttc attttcaacc
    31381 acacgcatac cacgaccacc accacctgca gctgctttta aaatcacagg ataacctatt
    31441 tctttggcaa gttttttagc tgcttcagct cctgccaaag ccccatcgct tcctgggatc
    31501 acaggtacgc ctgctctttg catgacttgt tttgcttttg atttatcact cattaaattc
    31561 atagcttcca cagaaggacc tataaatttg atgttatgtt tagcacaaat ttcaacaaaa
    31621 ttttgatttt cacttaaaaa tccgtatcct ggaaaaatcg catctgcttc agcaatttca
    31681 gctgctgtaa taatagctgg gatatttaaa tagctttcag aacttcttgc tttgcctata
    31741 caaatgcttg catcagcgta ttttaaatac aaagcatctt tatctgcttc agaatacaca
    31801 caaattgctt ttttacccat ttctttaatc gttcttaaag cacgcagtgc tatttctcca
    31861 cgattagcaa ttaatatgct tttaatttcc attttataat ttctccaccg caaataaagg
    31921 cattccaaat tctacaggct gaccatcagc aactaaaatt tcagcgatcc tacaatcaaa
    31981 ttccgcttca atttcattca tgattttcat cgcttcgata atagctatag tatcgccttt
    32041 tttaaccgta ctacctattt ttacaaaagg tgctgcacct ggacttggag cttgatagaa
    32101 agttcctacc atagggctat ttatacttgg tttgtttgat tttacacttt gactaggttg
    32161 agcttcgttt acaacgctta cattgatagg ttgtggagct ggaactggag gacaaacagg
    32221 agctggaaca tcgcagcaca tatctctttc aagttctatt tcaaaaccat cttgttcttt
    32281 gatcttaatt ttactaatat ttgcttcagc aaaaaggttt actaactctt taatttcttc
    32341 ttttgtcata aaattctcct acaaaattta agaacttaac cttgtattat ataaaaaaac
    32401 ttgaaattta actttaaaaa agaaaaaaat cataaaaaat atagattttt taggttataa
    32461 tccttacaaa caattacaaa tattaaaagg ttaaaaatgg gcttaaaagc ggataattgg
    32521 ataagaaaaa tggcattaga acacaagatg atcgaaccat tttgcgaagc aaatatagga
    32581 aaaggtgtgg taagctatgg actttcaagc tatggttatg atatacgcgt aggacgtgag
    32641 tttaaaattt ttaccaatgt taattcaact gtagtggatc caaaaaattt cgtagaagaa
    32701 aatgtagtag attttgaagg tgatgtatgt atagttcctg caaattcttt tgccctagct
    32761 agaactatag agtattttaa aatgcctgat gatgtcttag ctatttgtct tggcaaaagc
    32821 acttatgcaa gatgtggtat catcgtcaat gttacccctt ttgaaccagg ttttgaagga
    32881 catattacta tagaaatttc aaatactacg cctttacctg caaaaattta tgctaatgaa
    32941 ggcatagcac aagtgttgtt tttacaaggt gatgaaaaat gtgacaccac ttataaagat
    33001 aaaaaaggca agtatcaagc tcaaacgggc ataaccttgc caagaatttt aaaataggaa
    33061 cacttgttgc tttaatttta aaaaacttaa gcaaaggaag gcaaaatgtt taacaaaaaa
    33121 aatatcttaa tcacaggcgg aacaggctct tttggaaaaa cctatactaa ggttttatta
    33181 gaaaattata aacctaataa aatcatcatt tattctcgtg atgagctcaa acaatttgaa
    33241 atggcaagcg tttttaatgc tccttgtatg cgttatttta taggggatgt aagagataaa
    33301 gaacgcttaa gcgttgctat gcgtgatgtg gattttgtta tacatgctgc tgcgatgaag
    33361 catgtgccta ttgctgaata taaccctatg gaatgtataa aaacaaacat ccacggcgcg
    33421 caaaatgtca tcgatgcttg ctttgaaaat ggggttaaaa aatgtatcgc tcttagcaca
    33481 gacaaggctt gcaatcctgt aaatttatac ggtgcaacca aacttgcaag cgacaagctt
    33541 tttgtcgctg caaacaatat agcaggtaac aaacaaacac gctttggtgt tacaagatat
    33601 ggcaatgttg taggttcaag aggatcggta gtacctttct ttaaaaaact catcggcgaa
    33661 ggagctaaag aacttcctat caccgatgca agaatgactc gtttttggat cagccttgaa
    33721 gatggagtga aatttgtact gagcaatttt gcaagaatgc acggaggaga aattttcatc
    33781 cctaaaattc cttcgatgaa aatcaccgat ctagctcatg ctttagctcc tcatttaagt
    33841 cataaaatca taggtatcag agcaggagaa aaactacatg aaatcatgat ttcaagtgat
    33901 gatagtcatt taacctatga atttgaaaac tactatgcta taagtcctag tattaagctt
    33961 gtagatcaag agagtgattt tagtatcaat gccttgggcg aaaaaggaca aaaggtaaaa
    34021 gatggttttt cttatagttc ggataataat cctttatggg caagcgaaaa agaactttta
    34081 gaaatcatca atcacaccga aggtttttaa aatgcttact tattctcatc aaaacatcga
    34141 tcaaagcgat atagatgcgc ttacaaaagc tttaaaagat gaaattttaa cagggggtaa
    34201 aaaggtagat gaatttgaag aagccctttg tgaatatgcg ggcgtaaaac acgcttgtgt
    34261 attaaactca gccacttcag cccttcatct tgcctataca gcactagaca tcaaagaaaa
    34321 aatcgtttta accactcctt taaccttcgc tgctacggct aatgcagcct taatagctgg
    34381 agctaaggta gagtttatcg acattaaaaa cgatggcaat attgacgaaa aaaaactaga
    34441 agcaagactt ttaaaagata gtaaaaatat aggagctatt agcgtggtgg attttggggg
    34501 aaatagcgtt gaaatagatg aaatttcaag ccttgctaaa aaatacaata tccctttaat
    34561 cgatgatgca agccatgctt taggtgcctt atataaaagt gaaaaagtag gaaaaaaagc
    34621 cgatctttct atcttttctt ttcatcctgt taaacccatc actacttttg aaggcggggc
    34681 tgtggtgagt gataatgaag agcttatcac caaaatcaag cttttaagaa gccatggtat
    34741 cattaaaaaa aggctttggg atagcgatat gatagaactt ggctataatt accgcttaag
    34801 cgatgttgct tgtgctttag ggataaacca gcttaaaaaa ctcgatcaca atcttgaaaa
    34861 aagagaagaa atcgcaagtt tttacgataa agaatttgaa aaaaatcctt atttttccac
    34921 gataaaaatc aaaaattata aaaaaagctc aagacattta taccctatct tgctttttcc
    34981 tgaattttat tgtcaaaaag aagaactttt tgaaagcttg cttcatgcag gagttggtgt
    35041 acaggtgcat tacaaaccta cttatgagtt tagtttttat aaaaaactct taggagaaat
    35101 aaaactccga aatgcggata atttttacaa agccgagctt agcatacctt gtcatcaaga
    35161 aatgaatcta aaggatgcaa aatttgtaaa agatacttta tttagcattc ttgaaaaagt
    35221 taaaaaggga tattgtggat aagctagact ttagaagtca agattttagc caaactggaa
    35281 aggctatgta tgaactagct tgtgaacttt ttcctatccc tagaagcatc acagggcaag
    35341 gttttagagc tagtttagaa cttttaaata aaactctggg gggggggtat actcaaattt
    35401 cactctataa aaagtggtac aaaggttttt gactggatag tccctgatga atggaacgcc
    35461 aaagaagcct atatcatcac tccagaagga gaaaaaattt gtgattttaa aaagcataat
    35521 ctacaccttc taaactatag cgaagccatc aatcaagaaa tcgaactaga agaacttcaa
    35581 gatcatcttt actccataga agaaatgcct gatgctattc cttatgtaac gagttattac
    35641 aaaaggcgtt ggggattttg tctcacgcat aatgaaagaa aaaaacttaa aaaaggcaaa
    35701 tacaaagttt atatcgatgc gaaacatgat gaaaatgggg ttttggatta tgctgatttt
    35761 atcctaccta gtacgcaaaa ttcaaaagat gaaattttaa tttcaaccta tctttgtcat
    35821 ccttccatgg caaataatga gcttagtggt cctgtggtgg ctattttcct agcaaaatgg
    35881 cttttgagtt taaaagaaag aaagtataat taccgctttg tcatcattcc tgaaaccata
    35941 ggctctatag tctatcttag caaacattta gagcatttaa aaaaacatgt taaagcaggc
    36001 tttgtgcttt cttgcttagg cgatgatcat gcttactcac tcatacacac acccaaaaaa
    36061 aacactctaa gtgataaagt tgccttgcat acgcttaaaa ataaaaaaaa tttcaaagct
    36121 tttagttttt tagatcgtgg aagcgatgaa agacaataca atgctccgct tgtaaatctt
    36181 ggcattgtag gagtatgtcg cacaagatac ctagaatacg aacaatacca caccagcaaa
    36241 gatgatctca attttatctc tgaaaaaggt ttaatgggtg gacttcaaag catacaagaa
    36301 atgattttaa atctagaaat caacgctgta tatgaaaaca ccatagtatg cgaacccaat
    36361 cttggcaaaa gaggactata tcataccctt agcactgcca atgacattcc tttagcttgt
    36421 aattttctag cttactgtga tggagagaat gatatcatcg atatagccaa tatcttaaat
    36481 atgcaagctt atgaatttaa agaacttttg aaaaaaataa aattttatgg actagtaaaa
    36541 tgaaatattt tttagaacac aatggcaaaa aatactccga taaggattta atagatgctt
    36601 tttatcaact aggtataaaa aggggtgata ttttatgcgt acatacagaa cttatgaaat
    36661 ttggcaaagc tttgcttact aaaaatgatt ttttaaaaac cttacttgaa tgctttttta
    36721 aagtgctagg caaggaaggc actcttctaa tgccaacctt tacttatagt ttttgcaaaa
    36781 atgaaactta tgataaagtg cattctaaaa gcaaagtggg agtgctgaat gaatttttta
    36841 gaactagcgg ggggggggtt aggcgaacta gcgaccctat tttttccttt gctgtgaagg
    36901 gtgctaaagc ggatattttt ttaaaagaaa actcaagctg ttttggaaag gatagtgtat
    36961 atgaaatttt aactagggaa ggtgggaaat ttatgctttt aggcttgaat tatggacacg
    37021 ccctaacgca ttatgctgaa gagagaaata ccagcttttg caggtatttt aaggaattta
    37081 agggctttgt gattgacgag ctaggacaaa aaagagaaaa aaggataaat tattatgtaa
    37141 gagacttgga aaaagcctat gtatgcagcc ttgataagat aaatgaaatc gtgcggcaaa
    37201 caaggtatta caaaagcata aaatttgcag gagattttct agaaagctat gatgctaaag
    37261 aatatgtcaa agccataggc aacgccctta agcaggataa atttgccata tatgaaaagc
    37321 ttcttttatg aaaaatattt aaaggtagtt tatgaaatat ttacttgaat ttgaaaataa
    37381 aaaatactcc acttacgact tcatagaaac tttttacaaa ctaggactac aaaaaggcga
    37441 taccttgtgt gtgcatactg aactttttaa tttcggtttt cccttgcttt ctagaaatga
    37501 atttttacag actatattag attgtttttt tgaagttata ggcaaagaag gcactttgat
    37561 catgccaacc tttacttata gtttttgcaa aaatgaagtt tatgacaaaa taaattccaa
    37621 aacaaaaatg ggagcattaa atgaatattt tcgcaaacaa acaggagtaa aacgcacaaa
    37681 cgatcctata ttttcttttg ctataaaagg agcaaaagaa gaattatttt taaaagatac
    37741 aacaagttgt tttggggaaa attgtgttta tgaggtttta accaaagaga atggaaaata
    37801 tatgacattt ggaggccaag gacacacact aacacattat gcagaagaac aatttaatgt
    37861 attttacaga tatcataaaa ttttctctgg aattttaatt gatgaaaaca atatatcata
    37921 caataaaacc attagttatt atgttagaaa acttgacata tcttctgaac ccaatttaat
    37981 taacattatc aatattgtta ataatactaa aaattttaaa aaaaacaatt ttgcaggaga
    38041 tcatataaat atttacaacg ctaaagaata tatagaaatt ttatggaaaa aattagatat
    38101 aaaccaaaca attctaatag aaaattatga tacaatatat taattttcaa cattctcaag
    38161 aaagtggtat acaatggaaa aacaatttta tgaaatttta aaaaatatac ttgaaaccaa
    38221 agtagatgaa aatacaaatt taagcatgga aaactgcaag aactggactt ctttagctca
    38281 tattgatatc atcatgagtt tagaagaaga atttgaaatc aaatttaaca aagaagattt
    38341 aagtctctta aaatctcaaa gcgctttact agaaaaaatt caaaccctaa aggcagaaaa
    38401 atgaaagaaa atattgaaaa attatttcaa gccatcgctc aaaaaaatcc tatccattct
    38461 aaatatctta aaaaaattga attttcacaa gaagacgaag aagaatttga taaattaatt
    38521 tcttattata ttcaagatgg tatcagtata aaagaacaat gcgattgtta tttattgatc
    38581 cttaacgata ctttagaaga aacaaaattt ttcatagaaa atggggctta tcgttattct
    38641 agctttgatg aagttaagga taaagtttat tttaatgaaa gctatatgaa acaatacatg
    38701 ataggcttag ctctttcttc ttttgtttgg atagctcata ttaaagtgag aaagtatttt
    38761 tcacaatatt taaaaaattt tactccaaaa acaacttatt ttgaaatagg ccctggccat
    38821 ggagaatatt ttgcaagagc agttaaaagt ggtaaatttt ccgcctttta tggacttgat
    38881 atctctccaa caagttgcga acttactcaa aaaatggtaa aacaacaagt agggggattg
    38941 attacaaaat gtgatttttt atgtcaagat ttttttactt atgattttga taaaaaagct
    39001 gatttgatag tgattggaga agtgctagaa cacgtagaaa aacctcttga attccttaaa
    39061 agatctaaag agcttcttag cgatgtaggg gaaatttttg caactatccc tatcaatgct
    39121 cctgctattg atcatattta tttattttcc catcctgatg aagttaaaga tttgatagaa
    39181 aaatcaggct taaaatttaa agcttatgaa tgttttatgg caaatgatta tagtttggaa
    39241 aaagcattga aatttaaaaa tgctatcact atggcagtag ttttaaatgc ttaatacaac
    39301 actcaattta ccccttcatc atataggcgt ggcttgtaaa aatttagaaa aagaaaggga
    39361 atgttttttt aaactaggtt tttataaaga atcagaattt atagatgaaa aacaaggggt
    39421 aagaggcgaa tttatcattc cttgtaatga agcatttcca cagtatagat ttgaactttt
    39481 gcaaaattta aacgataaag gaccactaga tagctatttg aaaaataata ccaaaatgta
    39541 tcatttagcc tatgaaagta aaaatatcgc ccaagattta attcttttgg aacaacaagg
    39601 aggcatttgt attgttccta ttatgcaagc aagctatttt gctaaacttt gttttatcat
    39661 gatgccaaat aggcttttaa tcgaacttgt ggagctaaaa tgaatctttt ttcaccccat
    39721 ttaaaacgca atgagcttat aaaattcgcc aaagaattag actttagtaa aagtcaagat
    39781 cttcttatta atgtccatag aaatcatgct tttgaaggag tgcaaagtat cattgctcct
    39841 tttttacatt ttgctaattt aagagctgag tttaatttca gctcttatga tgatagcttg
    39901 agttttgata actttaaaga agctagttta gaacttttat ggctagattt aacccgctat
    39961 aaaaataatg tgcaaaattt tatagaagaa agacttttag aactaagaaa aatttcacaa
    40021 aaccctattt tagttcttag tttaggagaa tttaaaacag ataaaaaaat tttaaattgt
    40081 gaaattttta acatagaaaa actcataaaa gagtattttg atgaagaaga tattttagac
    40141 ttagctaaag aagaacttac aggctctaag cttaataata aagccttgat ttttttagca
    40201 caaattttag gacttagtct catccctgca cttgtaaaac ccgctcttaa agctcttgta
    40261 cttgatcttg ataatacctt gtatcaagga attttaggtg aagagggtat agataatctt
    40321 aatttaagtc ctttgcacaa aaccttacaa gaaaaaatta aaacttttaa aaaacaaggg
    40381 tttttacttg ccctagcttc aaaaaatgaa gaaaaagacg caaaaaaact ttttgaaata
    40441 aggaaagatt tcatcttaca atgggatgat tttgatgcta gaatgatcaa ttgggagcca
    40501 aaaggtgaaa atatcttaaa aattgctaaa aaatttaata taaatactaa cgctatgctt
    40561 tttatagatg ataatatcgc cgagcttgaa aataccaaaa ttacaggcgt taaaacactt
    40621 ttatgcgatg aaaatatact ttataaaatc aaactttttc ctaatctttt aaaactttca
    40681 aataccaaag aagatcaaat tcgtgccaaa gatatagcag ccaatgcttt aagagaagag
    40741 cttaaaagct taagcgatga agaatatttt caaaatcttg aaatcagctt aaattttagc
    40801 aaaaatgatc tgcaaaatat ccctcgcatt agcgaacttt taggcaaaac caatcaattt
    40861 atcgctaatt acacacgctt aaatcaagaa aaagtcgcac aacacatgca aaaagaactc
    40921 attgtaagtg tgagtatgag tgataaatta agcgatagtg ggattatcgc tatttttgtt
    40981 ttttcttgta aagaaggaaa tttatttatc gatgatcttt gcatttcttg tagggcttta
    41041 ggtagaaaac ttgaaactag aatgtttttt aaagcctttg aactagcttt acatttcttt
    41101 gatcttaaaa acaataatgc aaggctttat tatcaaaaag gcgaaagaaa tatgccattt
    41161 ttgagctttt tagaacaaat ttccaaagaa tttgaaaaaa actcagccct tattccattt
    41221 caaaatttaa acttcaaagg acttataatc catgaaaact agatttgata aagctaaaat
    41281 ttcaggcatt tgcgtaagcg tacctgaaca taaaatttgc attgatgatg agttagaaag
    41341 cgttttttca aacgatatca aaacccttaa aagaatgaaa aaagtcatag gtttaaacac
    41401 gcgttatatt tgcgatgaaa acacttgcgt aagcgatctt ggaaaacacg cagccaatac
    41461 acttttacaa ggtttaaata tagataaaaa tagccttgat gcactcatcg tagtaactca
    41521 aagtcctgat tttttcatgc cttctacggc ttgttattta caccaacttt taaatttaag
    41581 ctccaaaact gtagcttttg atttagggca agcttgtgca gggtatttat acggcttatt
    41641 tgtcgctcat tctttaatac aaagtggctt aggtaaaatt ttactcattt gtggagatac
    41701 tttaagcaaa ttcatccacc ctaaaaatat gaatttagct cctatttttg gtgatggagt
    41761 aagtgcaact ttaattgaaa aaacggattt taacgaagct ttttttgagc ttggaagcga
    41821 tggaagacat tttgataaac tcatcattcc aaaaggtgcg atgagaatac ctaaagcaga
    41881 tattttcaac gatgattcac tcatgcaaac tgaggagttt agacaattag aaaatcttta
    41941 catggacgga gtaaatattt tcaatatggc tttggaatgc gaacctaaaa gctttaaaga
    42001 aattttagaa ttttctaaag tagatgaaaa agacattgct tttcatcttt ttcatcaatc
    42061 caatgcgtat ttggttgatt gcatcaaaga agaattaaaa cttaatgatg ataaagttcc
    42121 taatttcatc atggaaaaat acgctaattt aagcgcttgt tcactacctg ccctactttg
    42181 cgaactagat actccaaaag aatttaaagc gagtttaagt gcttttggtg cagggcttag
    42241 ctggggaagt gcggtgttga atttcaaaga tttatacaca aaagatattt taatttacac
    42301 aaaggagaaa taatgacaaa aactgaattt ttagaagagc ttaaagaagc tatgcataga
    42361 gatgaagact taaacgagga tatgctactt gatgatatag atgagtggga tagtttggct
    42421 tttgtatccg tgatggtgct ttataaaaat ctttttactt taaaaatcac agccgaggac
    42481 ttgaaaaatt gtcaaaaagt aagtgattta atcaatttag caaagcttga ttaaaacctt
    42541 taaggtttta atcttttatc tctaattcaa atttatctcc cacatcttta aaagtaaaca
    42601 ctttatttcc acaaggataa gagatggaat tttcttgcat gaaagatttt cttccttgta
    42661 gtttttcaag cattaaagga agttcttttc taaataaggc tttatcaggt ataccacaac
    42721 catgatctaa atttttaata aattttccat caattttatt ttcatctatc aaatttaagc
    42781 ttacatcgta acctaaaatt tttaatattt gcatggtttg ttctttaaaa tttgctggag
    42841 ttaaaggatc ttctttacta tgataactca cataaataat atttttattt ttttgacttt
    42901 gcaaaatcaa atgatcctta tttaacaatg ttctaataaa ataattttca ttattaaaaa
    42961 aataaggtga attttcttta cgcgtccagt gggtttttag aaaaaaaata atcctattat
    43021 gtggaaaatc ttcataataa tcaccgtaac tatgttccat ttctcttcct aaaatataat
    43081 ttaaaggtgg caaagccgaa cccgaattat caatcacacc atccacatac caaggggcta
    43141 ttttagctat aagcaaggct aagtatcctc cataagaccc ccccccataa atttttggta
    43201 aatctgcaaa ttttggaaag catttaacca aatcttttaa agcattgata tgatcaatag
    43261 ctgccataat gccaaaattt tgataatctc cattaggcgg gataaaagtt gaagtaaaat
    43321 ttagtttaaa gttatgatcg agtttatttt gcatttttaa attttctaca tgtttcacta
    43381 aagaattcgc taaaaaaagc gcattatcat tatttatttc accataagaa aaatgaaact
    43441 gatttaataa atttttaata ttttcaatat cttcctcttg aaaatatttg tatgcactat
    43501 atttctcaac atctgaacgc ctttggcaaa aacaatgata aaaaacattt attgtcacta
    43561 catcaaaatt tttagcaata taatttctat aagaatctaa aaaatatata tttgcattag
    43621 ctccataacc tcctatgaca aaaactatag ctttgagatc tttttcatca tcataactta
    43681 tgcgatattc aagcttactg gttcttttaa tacctagttc tacatcatca caagaatcaa
    43741 tttcaaaggt ttggtttata agcatatatt ttccttttta attaataatc aattttaact
    43801 gattttctac atctttaaaa gtaaacactt tatttccaca aggataagag atggaatttt
    43861 cttgcatgaa agattttctt ttttgtagtt tttcaagcat taaaggaagt tcttttctaa
    43921 ataaggcttt atcaggtata cccattccat gagttaaatc tttagcaaat ctaccatcta
    43981 ttttattctc gtctatgata tgcaatgttg catcgtaacc taaatattgc aaagactcga
    44041 tgtaggcaat tttaaattta caaggagtta atggatcata tttagaatga taactaacat
    44101 aaaagatgtt agtatttttt tcactctgta ttatgagatg ctctttattt aataaagctc
    44161 taatcaaata attctcctta gcaaaaaaat aaggtgaatt ttcatcccta ttccaatatg
    44221 tttttaaaaa acaacttaca aaaaaatgat tgccctgtat atacatatct ccattagtat
    44281 ctttactttc aaattccaac tctctaccaa taatataatt aagcggtgga acagccgaac
    44341 ccgaattatc aatcacgcca tcaacatacc aaggggctat tttagctata agcaaggcta
    44401 agtatcctcc ataagacccc cccccataaa tttttggtaa atctgcaaat tttggaaagc
    44461 gtttaaccaa atcttttaaa gcattgatat gatcaatagc tgccataatg ccaaaatttt
    44521 gatattctcc atccgaaggg atgtaagttg cactcaatct ttcctcaaaa tcatagggca
    44581 gtcgatttaa cattttcaat tctgtcataa tctcacttaa atattcacaa tgactgacca
    44641 cagtattgtt ggccaattga tcgcatggga tattgtattt acaaagtact ttttccataa
    44701 gtcttaaatc ttcttttgta aaatctgcta gcgttgaata tttctccaca tccgagggtc
    44761 tttgacaaaa acaatgataa aaaacattta tcgttgccac atcaaatttc ttagctatgt
    44821 aatttctata agaatctaaa aaatgtatat tagcattagc cccataacct cctatgataa
    44881 aaactatagc tttcatttct ttttcatcat cataactgat gcggtattca agttttgaag
    44941 ttcttttgat attaagttct acatcatcac aagaatcgat ttcaaaggtt tgatttatga
    45001 gcatataaag gcctttttta ttaatttata gatattatat tacaaaaaat taaaaaggta
    45061 aatcatgaca actcacatct atgatttttt agaaaaaagt ttaatcaaat ttagcgaaaa
    45121 aactgctttt gtagaaccct ttgccaagga aagaaaagaa atcacttata aagactttga
    45181 tcttttttct aaaaaactag ccagtgaaat tttaaaaact ttaaaaaatg ataatcctac
    45241 tcaagttcct gttttaatca tcttgcctaa agggattgat tgtttgattt cattttttgg
    45301 agtggcactc agtggaaatt tttataccct tttagatgaa aaaagtccta aagaaagagt
    45361 agaaaaagtc atagaggttt taaagcctaa actttttatc acttcaaagg acttaaattt
    45421 taacttagat ttacctacgc tttatacaca agactttgaa agttttgata tagatgagag
    45481 tttaataaag catgccaaag aaaaacatat agatactaat ttactctatg ttttctttac
    45541 aagtgggagc acaggtattc ctaaaggagt aagcatagca cataagagtg tgattgatta
    45601 tactttttgg gtgtgtgaga cttttaaatt tgatgagaat gaaattttag ccaatcaagc
    45661 gccattttat tttgacaata gcattttaga tattttttca agtgtaaaat caggagcgac
    45721 tttacacctt ttacctaatc atctttttgc ctttccaaat aaaattttag aatgccttga
    45781 aaaagaaaaa gtaagcacta tattttgggt gccttcggtg ctaatttatt ttgcaaatac
    45841 ggaagctttg aataatttta gtttaaacgc cttaaaaaag atactttttt gtggtgaaat
    45901 catgcccaat aaacagctca atatttggcg taaacactta cccaatgcct tatttgccaa
    45961 cctttatggc ccaacagaaa tcactgatgt atgttctttt tatatcatca atcgcacttt
    46021 taaagatgaa gaacttttac cgataggaaa agcgtgcaaa aacacagaac ttttagtttt
    46081 tgatgaaaat atgaatttca taagtcctaa acaaataggt gttaaagggg agcttttcgt
    46141 gcgtggaact tctttgtctt tagggtatta taatgacaaa gaaaaaacca aacaagcttt
    46201 tattcaaaat cctttacatg ataattattt agatttactc tataaaacag gagatatcgt
    46261 ttcttataat gaatttggag agcttttatg ctacggaaga gcagataatc agataaaata
    46321 tatgggacat agaatagaac ttggagaaat agaaagcgtg ataaattctc atgtgaatat
    46381 taaaaacagt gcttgtattt ttaaagaaga tattatttgt ttttatgaaa gtgaagaaga
    46441 aattaatttt aaagattttt tgaaagataa attaccttct tatatgatcc caaaaaattt
    46501 tattaaactc gacaaattta agcttaatca aaatggtaaa attgatagaa aggttttaaa
    46561 agaacttgtt taaataaata ttttataatt tcaaaaaact aaaggagaaa aaatgcaaga
    46621 aatcaaacaa ttttttatca atatagaaag aacagatatc aatgagagta tggaaaatct
    46681 agtaagtgaa gattttatcg atagtatcga tatcatggct ttggttgccg aaatagaaaa
    46741 attttataaa aaacccttaa aagcagaatt tatcacacct gaaaattttg aaagctttga
    46801 aaatatcaaa aaaatgcttg aaactgcaat gaaagactaa tctttccttg caagttcaag
    46861 ctgttctttt aaagaactga tgatttcatt tttagaaaca ataatttgtg ctataaaatc
    46921 cgccacatca tcccaatctt tacttagtgt atgagttaaa gtatagtttt gttcgtattc
    46981 ttcccaattt acaggagcaa aaagagaatt tttatgcggg aaatatttgt tttttaccca
    47041 ttcaagtgaa gaagcaaaat aatccacata agctttagca atatcttttt gcactgcaaa
    47101 ttttaatctt ttttctttgc tgccttcaaa ttttcttctt gccataaaaa gcaaagaatt
    47161 aagattatcc tgctttaaat ctttttgatt taatcttgac ataagctcca ttcctaaaag
    47221 attaaaactt tcatttttgg tttgttttaa aacaaaactc tcatcccatt caagtcctaa
    47281 atgataaaca aaatccttaa gtaaagtccc tcctacataa tcctccctta gaagtcttac
    47341 tatcaaattt tcttctccaa atacctcagc atgagttttg caaatccatt catagtcaaa
    47401 aatatatttt ctaggatgat cttgcggagc aaaatcagca gaataatacc ccatattgtt
    47461 tttatgatct tgagaacaat gtgagtttaa ataacccaaa gtatctctaa aatacacaat
    47521 aatataaatt tgagtaaaac ctaactctct cataatcttt tctaaaattt ctacatgttt
    47581 tttggtagaa aaatcccaaa ctataccctc agctgaaaaa ataaattttt tatctttatg
    47641 taaagcactt tcacttttaa aattttctat agctctaaga agtctttcat ttgtgatatg
    47701 acttaaaaca ctctcttttt ttaaaatatc ttctttttga accaattcta aaaccatatc
    47761 caccaaagcc caatgcctat ttgccactct aagacttttt gggtaaatat aagctttttg
    47821 caaaagcttt tcttcgtttt gcatcaagaa gccttgtttt tcttgatttc ctgtattagt
    47881 agttcctata tgtaaatatg ctgtcatttt atatccttta tctttatttt aatttatcat
    47941 ctctaactca aatttatctt ctaaatcctt aaacacaaat actttattcc cacaaggata
    48001 agagatagaa ttttcttgca taaaagattt tcttccttgt agtttttcaa gcattaaagg
    48061 aagttctttt ctaaataaag ccctatcagt cattctaagt ccatgctcta aactttttac
    48121 aaatctacca tctatatcat tttcatcctt tattaaatgt aaagttgcat cataccctaa
    48181 ttcttgataa cacttataaa gttctatttt attttgcact ggcgcaccca tatcttgtat
    48241 actatgatag cttacaaaaa tggtattttt atttaaattt gattgaattt gaagatggtt
    48301 tgaatttaaa attgctctaa ttaaataatt ttcatcacca aaataataag aagaattcat
    48361 atttctattc caatatttat atacaaaaca ataaagtcta taaccacttc cttcgaaata
    48421 aaattcccct tgattcattt ctcttcctaa aatgcacgcc aaaaatggca agcaaacacc
    48481 tgaattatca atcacaccat ccacatacca aggagctatc tttgctatga gcaaggctaa
    48541 gtatcctcca taag
//
LOCUS       DBBXPZ010000002        39173 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.002, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000002 DBBXPZ010000000
VERSION     DBBXPZ010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 39173)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39173)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39173
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.002"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(116..1113)
                     /gene="mnmH"
                     /locus_tag="ACJFD7_000051"
                     /pseudo
     CDS             complement(116..1113)
                     /gene="mnmH"
                     /locus_tag="ACJFD7_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343934.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
     gene            complement(1103..1588)
                     /locus_tag="ACJFD7_000052"
     CDS             complement(1103..1588)
                     /locus_tag="ACJFD7_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HGG0858915.1"
                     /translation="MQYLYAPWRSEYFEKEKSICPFCDCANKIKSDEELGVIFRAKHC
                     FGVMNRYPYSAGHFMVIPYIHEEHIENLSDEIWQEMSYFVRLGVKILKEQIHANGVNI
                     GMNLSKDAGAGIAFHCHYHLVPRWSGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNA
                     Q"
     gene            complement(1598..2374)
                     /gene="trpC"
                     /locus_tag="ACJFD7_000053"
     CDS             complement(1598..2374)
                     /gene="trpC"
                     /locus_tag="ACJFD7_000053"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HGG0858916.1"
                     /translation="MILDKIFEKTKEDLKERKLKLPYDMLGRSLASNPFFPKDVIKAL
                     KRVEKEVKIIAEVKKASPSKGVIREDFDPLSIALNYEKNKAAAISVLTEPHFFKGSLE
                     YLSLIRRYTQIPLLRKDFIFDEYQILEALVYGADFVLLIAKMLSMKELKKLLEFARHL
                     GLEALVEIHDKEDLSKAIFAGADIIGINHRNLEDFTMDMSLCEKLIPQIPNSKIIIAE
                     SGLENKEFLEHLQNLGVDAFLIGEYFMREKDEGKALKALL"
     gene            complement(2371..3648)
                     /locus_tag="ACJFD7_000054"
     CDS             complement(2371..3648)
                     /locus_tag="ACJFD7_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HGG0858917.1"
                     /translation="MYRYLLFVLAAFFLAACGSSKINVVYPDYTKYKSNDFDLRVMKA
                     YNYEYYKQYKEARDEFLSLYQDYNNTNFLENAFLLTLANNLDKKEEINNIAKPYLDKS
                     DNLKRLSALYALNSNDINNAQKLMKELLTKKDSDPRNLELYGDILVKKNDLKNATKYY
                     RSAYNQVQNEEILFKLIGIYAILNDTLNIKNVLEFSRKTNGCTLKTCVLLAKIYFDEK
                     NIEALKSIYKELYQLTKNKSFVLALVELLNSQGKTEEALKISLQYDLDDDIKLALYQN
                     LKRFDDAKKMSLALYHKTKNKEYLLRAAVFEFEAANEAKKITPKVINSVKEKFEQAID
                     KDSNALYLNYYGYLLIDYDLDVKKGIELVKLALEKDPQNLYYLDSLAWGYYKLGDCKQ
                     AWEILKQTLDDKEFANSDESKVHIKAIKACIKP"
     gene            complement(3621..3995)
                     /locus_tag="ACJFD7_000055"
     CDS             complement(3621..3995)
                     /locus_tag="ACJFD7_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HGG0858918.1"
                     /translation="MIFDKNFSYAFDENACEKCGGKCCTGESGNIFASKEELEVLRKH
                     LNLESKEFAEKYLRKVGFKMSFKEVECEDGFACIFFDTQKRNCSIYDFRPKQCRTFPF
                     WEYFKTHQKELEKECIGICYLS"
     gene            complement(3985..4686)
                     /locus_tag="ACJFD7_000056"
     CDS             complement(3985..4686)
                     /locus_tag="ACJFD7_000056"
                     /EC_number="2.1.1.223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016430 - tRNA
                     (adenine-N6)-methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HGG0858919.1"
                     /translation="MSDLITLAQLSQGYRYNSDSLILADFILKQGIKGAVFDVGAGCG
                     IIGILLKKNIANLSLSLIDIQKENIKLIEKNLKSNKIQGDIFHDDFNQFQIIKKFDFI
                     VCNPPFYRQGAYKSEDQHKAISKFQEFLPLHSFLAKTNSMLKPNGTLYFCYEALALDE
                     ICFILKDMKMKITKLCFVHTHQSKKARLVLIQVKKGSKSPCEILPPFFVYENEILSKQ
                     MQEIHLRFRLKSYDI"
     gene            complement(4692..4841)
                     /locus_tag="ACJFD7_000057"
     CDS             complement(4692..4841)
                     /locus_tag="ACJFD7_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0858920.1"
                     /translation="MIKIAFFITFVISFLAAQSPVNFKEDNNITKERNIFKEQSPKRI
                     KIPTH"
     gene            complement(4859..4935)
                     /locus_tag="ACJFD7_000058"
     tRNA            complement(4859..4935)
                     /locus_tag="ACJFD7_000058"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4899..4901),aa:Arg,seq:cct)
     gene            complement(4964..7039)
                     /gene="fusA"
                     /locus_tag="ACJFD7_000059"
     CDS             complement(4964..7039)
                     /gene="fusA"
                     /locus_tag="ACJFD7_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HGG0858921.1"
                     /translation="MSRNTPLKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH
                     DGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGA
                     VAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPV
                     PLQIPIGAEDNFKGVIDLVTMKALVWEDDTKPTDYVEKEIPAELKEKAEEYRTKMIEA
                     VSETSDELMEKYLGGEELSLEEIKTGIKAGCLSLSIVPMLCGTAFKNKGVQPLLDAVV
                     AYLPAPDEVANIKGEYEDGTEVSVKSTDDGEFAGLAFKIMTDPFVGQLTFVRVYRGCL
                     ESGSYAYNSTKDKKERIGRLLKMHSNKREEIKVLYAGEIGAVVGLKDTLTGDTLVSEK
                     DKVILERMDFPDPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIIS
                     GMGELHLEIIVDRMLREFKVEAEVGQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHV
                     FLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQEALQNGVLAGYPVEDVKVTVY
                     DGSYHEVDSSEMAFKLAASMGFKEGARKAGAVILEPMMKVEVETPEDYMGDVIGDLNK
                     RRGQVNSMDERGGNKIITAFCPLAEMFGYSTDLRSQTQGRATYSMEFDHYDEVPKNVA
                     DEIIKKRNG"
     gene            complement(7052..7522)
                     /gene="rpsG"
                     /locus_tag="ACJFD7_000060"
     CDS             complement(7052..7522)
                     /gene="rpsG"
                     /locus_tag="ACJFD7_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HGG0858922.1"
                     /translation="MRRRKAPVREVLPDPIYGNKVITKFINSLMYDGKKSTATTIMYG
                     ALEAIDKKGGEKKGIDIFNDAIENIKPLLEVKSRRVGGATYQVPVEVRPARQQALAIR
                     WIISFARKRSERTMIDKLAAELLDAANSKGASFKKKEDTYKMAEANKAFAHYRW"
     gene            complement(7592..7978)
                     /gene="rpsL"
                     /locus_tag="ACJFD7_000061"
     CDS             complement(7592..7978)
                     /gene="rpsL"
                     /locus_tag="ACJFD7_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HGG0858923.1"
                     /translation="MPTINQLVRKERKKVLEKSKSPALKNCPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTSGFEVISYIGGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGAL
                     DTAGVAKRTVSRSKYGAKRPKAGAAK"
     gene            complement(8098..12651)
                     /gene="rpoC"
                     /locus_tag="ACJFD7_000062"
     CDS             complement(8098..12651)
                     /gene="rpoC"
                     /locus_tag="ACJFD7_000062"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HGG0858924.1"
                     /translation="MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPET
                     INYRTLKPERDGLFCAKIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSR
                     MGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAFYDNEST
                     KKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMAAT
                     NSEAKKKTIIKRLKVVENFLNSNLNANTDSDEAVPNRPEWMMITNLPVLPPDLRPLVA
                     LDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRR
                     ANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPK
                     KMALELFKPHLLAKLEEKGYATTVKQAKKMIENKTNEVWECLEEVVKGHPVMLNRAPT
                     LHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAECKVLMLS
                     SMNILLPASGKSVTVPSQDMVLGIYYLSLEKAGAKGSHKICTGIDEVMMALESKCLDI
                     HASIQTMVDGRKITTTAGRLIVKSILPDFVPENSWNKVLKKKDIAALVDYVYKQGGLE
                     ITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKKQVREIQNSYNLGLI
                     TSGERYNKIIDIWKSTNNVLSKEMMKLVEKDKEGFNSIYMMADSGARGSAAQISQLAA
                     MRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKL
                     IDVAQNVKITIEDCGTHEGVEINEITADSSIIETLEERILGRVLAEDVIDPITNSVLF
                     AEGTLMDEEKAKILGESGIKSVNIRTPITCKAKKGICAKCYGINLGEGKLVKPGEAVG
                     IISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKQGKNI
                     VANRRNAAVLLVEPKIKTPFKGVINIENIHEDVIVSIKDKKQEVKYILRKYDLAKPNE
                     LAGVSGSIDGKLYLPYQSGMQVEENESIVEVIKEGWNVPNRIPFASEILVEDGEPVVQ
                     NIKAGEKGTLKFYILKGDGLDRVKNVKKGDIVKEKGFFVVIADENDREAKRHYIPRES
                     KIEFNDSEKIDDANTIIASAPKKERKVIAEWDAYNNTIIAEIDGVVSFEDIEAGYSAD
                     EQIDEATGKRSLVINEYLPSGVRPTLVIAGKGDKAVRYHLEPKTVIFVHDGDKIAQAD
                     ILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERIII
                     QAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISE
                     IQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTKFIEGDLVSRRKFREENERIIR
                     MGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVI
                     LGRMIPVGTGLYGEQNLKLKEQE"
     gene            complement(12644..16780)
                     /gene="rpoB"
                     /locus_tag="ACJFD7_000063"
     CDS             complement(12644..16780)
                     /gene="rpoB"
                     /locus_tag="ACJFD7_000063"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HGG0858925.1"
                     /translation="MCDMLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD
                     NGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIR
                     LTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVI
                     FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGY
                     KKQDIIKLFYPIQTIHVKKDKFLTEFNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKK
                     AEQLIKDGLKWIEYPVEILLNRYLANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSF
                     DIANDLANGVDAAIINSFAQDGETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKD
                     AAKAFVNDLFFNPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKN
                     GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDLI
                     NPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVH
                     ATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTAT
                     QEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARREEVQLIDLCSGMVVGVAASL
                     IPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQIIARDAWEAVKAKRGGVVE
                     KVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGP
                     SMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKD
                     GIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGEVKPTPEERLLR
                     AIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKEKMALEKEHH
                     DRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISELEKINRFTLTTLIK
                     AYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYIATKRK
                     LKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILESHL
                     GLVGLRLGDQIQEIFDRKQKDFLKELRAKMLEICSIPRLANEKEFIKSLSDEELLNYA
                     RDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGCMY
                     MLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
                     MLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
                     "
     gene            complement(16889..17266)
                     /gene="rplL"
                     /locus_tag="ACJFD7_000064"
     CDS             complement(16889..17266)
                     /gene="rplL"
                     /locus_tag="ACJFD7_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HGG0858926.1"
                     /translation="MAISKEDVLEYISNLSVLELSELVKEFEEKFGVSAAPVMIAGGA
                     AAGGAAAATEEKTEFDIVLTDGGAKKIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEG
                     VAKAEAEEAKKQLEEAGAKVELK"
     gene            complement(17287..17766)
                     /gene="rplJ"
                     /locus_tag="ACJFD7_000065"
     CDS             complement(17287..17766)
                     /gene="rplJ"
                     /locus_tag="ACJFD7_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HGG0858927.1"
                     /translation="MTRSEKVEIIAKLEEGFKASEAIVVCNYRGLSTKKLEELRNNAR
                     ENNVKVQIVKNTLANIALNNSGKTGLVLKDTNIYLWGEDQLGVSKVAAKFEENNDKFE
                     IKTAHIEGEVADVAKVKALAKMPSRNELLAMLLQVWNAPITNFTIGLNALKNKKESE"
     gene            complement(17918..18619)
                     /gene="rplA"
                     /locus_tag="ACJFD7_000066"
     CDS             complement(17918..18619)
                     /gene="rplA"
                     /locus_tag="ACJFD7_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HGG0858928.1"
                     /translation="MAKIAKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEI
                     ALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNSGADIVGSDDLVE
                     EIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQ
                     VNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTM
                     SPSVKLETQELLDMK"
     gene            complement(18674..19099)
                     /gene="rplK"
                     /locus_tag="ACJFD7_000067"
     CDS             complement(18674..19099)
                     /gene="rplK"
                     /locus_tag="ACJFD7_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HGG0858929.1"
                     /translation="MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNE
                     RTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGTDNPLKNKVGKLTR
                     AQVLEIVDKKIADLNTKDRDQAAKIIAGSARSMGVEIVD"
     gene            complement(19125..19658)
                     /gene="nusG"
                     /locus_tag="ACJFD7_000068"
     CDS             complement(19125..19658)
                     /gene="nusG"
                     /locus_tag="ACJFD7_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HGG0858930.1"
                     /translation="MSTHKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTE
                     DVIEFKNGKEKISERSLYSGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEK
                     DINLILEKVHNRAAPKPKISFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIF
                     GRSTPVEILYSQVEKII"
     gene            complement(19668..19847)
                     /gene="secE"
                     /locus_tag="ACJFD7_000069"
     CDS             complement(19668..19847)
                     /gene="secE"
                     /locus_tag="ACJFD7_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HGG0858931.1"
                     /translation="MEKLITYFKLSKAELRKVIFPLKEQVRNAYITVFVVAAVISLFL
                     ALVDWFMSSIVSAIV"
     gene            complement(19866..19941)
                     /locus_tag="ACJFD7_000070"
     tRNA            complement(19866..19941)
                     /locus_tag="ACJFD7_000070"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(19906..19908),aa:Trp,seq:cca)
     gene            complement(19954..20112)
                     /gene="rpmG"
                     /locus_tag="ACJFD7_000071"
     CDS             complement(19954..20112)
                     /gene="rpmG"
                     /locus_tag="ACJFD7_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HGG0858932.1"
                     /translation="MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTL
                     HKEVKLKS"
     gene            complement(20165..21364)
                     /gene="tuf"
                     /locus_tag="ACJFD7_000072"
     CDS             complement(20165..21364)
                     /gene="tuf"
                     /locus_tag="ACJFD7_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HGG0858933.1"
                     /translation="MAKEKFSRNKPHVNIGTIGHVDHGKTTLTAAISAVLSRRGLAEL
                     KDYDNIDNAPEEKERGITIATSHIEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKADMVDDAELLELVEMEIRELLSS
                     YDFPGDDTPIISGSALKALEEAKAGQDGEWSAKIMDLMAAVDSYIPTPTRDTEKDFLM
                     PIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEA
                     GDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRP
                     QFYVRTTDVTGSIKLADGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSG
                     VVSKIIK"
     gene            complement(21433..21507)
                     /locus_tag="ACJFD7_000073"
     tRNA            complement(21433..21507)
                     /locus_tag="ACJFD7_000073"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21473..21475),aa:Thr,seq:ggt)
     gene            complement(21612..21688)
                     /locus_tag="ACJFD7_000074"
     tRNA            complement(21612..21688)
                     /locus_tag="ACJFD7_000074"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21652..21654),aa:Gly,seq:tcc)
     gene            complement(21695..21780)
                     /locus_tag="ACJFD7_000075"
     tRNA            complement(21695..21780)
                     /locus_tag="ACJFD7_000075"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21744..21746),aa:Tyr,seq:gta)
     gene            complement(21830..21905)
                     /locus_tag="ACJFD7_000076"
     tRNA            complement(21830..21905)
                     /locus_tag="ACJFD7_000076"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21870..21872),aa:Thr,seq:tgt)
     gene            complement(21997..22757)
                     /locus_tag="ACJFD7_000077"
                     /pseudo
     CDS             complement(21997..22757)
                     /locus_tag="ACJFD7_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343903.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
     gene            complement(22759..23415)
                     /locus_tag="ACJFD7_000078"
     CDS             complement(22759..23415)
                     /locus_tag="ACJFD7_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HGG0858934.1"
                     /translation="MLELLNTDTLLRLWQGLFVTLEISFISIIITSIGGLFLGILMSF
                     KNTYIYAFCRLGLEFVRVMPLLVWLFVVYFGFPRWFGWDLSSVSAAIIVFSIWGCFEM
                     MDLVRVSLQSIPKHQYESASSLGLNTVQSFAYVIIPQAMRRLTPMSMNLLTRMIKSTT
                     FAYLIGAVELVKIGQQIIEFHNRNDFAPFIIYGLIFFIFFILCYPITLYSRKLEKKWS
                     "
     gene            complement(23408..24109)
                     /locus_tag="ACJFD7_000079"
     CDS             complement(23408..24109)
                     /locus_tag="ACJFD7_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HGG0858935.1"
                     /translation="MDFDFILAQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYF
                     KIKILENICKLYIEFSRNTPLLIQLFFLYYALPKFNIHLEQIPPLDLICLSVEETLRP
                     SFACVIVGLSFLGGSYMAESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAI
                     SMPSISANIIFLIKETSVVSIIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILP
                     LSFILLKFEKRLLHA"
     gene            complement(24125..24721)
                     /gene="nssR"
                     /locus_tag="ACJFD7_000080"
     CDS             complement(24125..24721)
                     /gene="nssR"
                     /locus_tag="ACJFD7_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrosative stress-sensitive transcriptional
                     regulator NssR"
                     /protein_id="HGG0858936.1"
                     /translation="MKDYLELLSSVGKLKKFQKNSILFYEGEEAKKFFILLKGKIRIY
                     KSTASDKEITLHYFNPPNFIAEMPAFKKLNYPANAVFEEDGEILEIDFINFQNLCSEN
                     KEFNFLLISSLFDKIKILEKKLSQNALDLRTRLLKYLLENEKNLDTISQKQIAIDLNV
                     RAQSLSRVLKELKISELIDTKKGRIEILNKDMIMKELW"
     gene            24816..25199
                     /gene="ctb"
                     /locus_tag="ACJFD7_000081"
     CDS             24816..25199
                     /gene="ctb"
                     /locus_tag="ACJFD7_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="truncated hemoglobin Ctb"
                     /protein_id="HGG0858937.1"
                     /translation="MKFETINQESIAKLMEIFYEKVRKDKDLGPIFNNAIGTSDEEWK
                     EHKAKIGNFWAGMLLGEGDYNGQPLKKHLDLPPFPQEFFEIWLKLFEESLNIVYNEEM
                     KNVILQRAQMIASHFQNMLYKYGGH"
     gene            complement(25196..27019)
                     /gene="recG"
                     /locus_tag="ACJFD7_000082"
     CDS             complement(25196..27019)
                     /gene="recG"
                     /locus_tag="ACJFD7_000082"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HGG0858938.1"
                     /translation="MKIKESDFEFFKKLKIKSAIDLALLLPKKIENLNPSKNPKENEI
                     CTQKITIKSVSSRKNQLFGLGFCEEWQENISFVFFHPRAWHFGICKVGKGLIFNAKLS
                     RFNHTWQFNNPKILTSFEGFSPKYQILGLKDAKIAAFIHKYLNYENLQESGIGDKYIH
                     FLLNLHAYDEKSFFMFENLQNFSKDLKYIEIYNFLKRLKAKKTHFKAHQINVFNIANW
                     LKDLPFSLTKDQLNALKDIEKDLHSKEARRRVIMGDVGCGKTLVLLGAALMVYPKQAI
                     LMAPTSILAHQLYEEAKKFLPDFMNILFIKGGKKEKDLEQNIQKANLIIGTHALIHLE
                     SHNAVLVMIDEQHRFGSAQREKIHSLSKQEFAPHFIQFSATPIPRTLSMIQSELLNFS
                     FIKQMPFKKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLVSASDNIPYLSLEQ
                     AKEYWQSHYEKVFVTHGKDKQKDEILERFRDEGNILLSTTVVEVGISLPRLSMIVIVG
                     AERLGLATLHQLRGRVGRVGLKSTCYLYTKLKEIPSRLKEFASTLDGFKIAELDLKNR
                     LSGDLLDGFMQHGNEFKFFDFSKDEEILEKAKKDLAKKLPN"
     gene            complement(27009..28229)
                     /locus_tag="ACJFD7_000083"
     CDS             complement(27009..28229)
                     /locus_tag="ACJFD7_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M16 family metallopeptidase"
                     /protein_id="HGG0858939.1"
                     /translation="MQYLESRGIKIPFIFEKNSDFPIVVLKLVFRNCARSYDEIAGLA
                     KMFSRILNEGVDDKFFKDLEFRAINLEASSGFESLEINLSCLKENFDFALKSLEKLLL
                     KPRIEEKILQKLKINALGELASKNSDFDYLAKNLLNAQIFKCKEFQSSNDGDEKSIEI
                     LSLKDLQNFYKNFIHLSDLVVILGGDLEEKQAKEDLLKLLSKLQIGKKNTPKKYELSK
                     NIKDEILIRPESEQAYIYFATPFFADFKDKDLYLAKIALFVLGQGGFGSRIMEEIRVK
                     RGLAYSAYAMLDMNMSFSRVFGYLQTKNESAKEAKKIVKELFEDFIKNGMTQNELDQA
                     KNFLIGSTPLRYEGLSKRLSMAFNEFYQGLNLGYYKEELKLMEKVKLETINAYINKHQ
                     ELLNISFASIQNEN"
     gene            complement(28229..29275)
                     /locus_tag="ACJFD7_000084"
     CDS             complement(28229..29275)
                     /locus_tag="ACJFD7_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HGG0858940.1"
                     /translation="MKRLDKKEALDLLHHASLTELGEMAYKRKLELHPEKITTFVVDR
                     NINYTNVCCIDCSFCAFYRHHKEDDAYILSFEEIGKKIEELEAIGGTQILFQGGVHPK
                     LKIEWYEELVSWIKEHYPNITVHGFSAVEIAYIAKASKISITEVLQRLQAKGLFSIPG
                     AGAEVLSDRVRDIIAPNKCDTATWLEVHRQAHKIGMKSTATMMFGTVENDEEIIDHFE
                     HLRKLQDETGGFRAFILWSFQSDNTALIQKHPEIMKQSSNKYLRLLALARLYLDNFKN
                     LQSSWVTQGSLIGQLALKFGANDLGSTMMEENVVSAAGASYRMNQDEMIRLIRSLGEN
                     PAKRNTAYEILERF"
     gene            29350..30537
                     /locus_tag="ACJFD7_000085"
     CDS             29350..30537
                     /locus_tag="ACJFD7_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0858941.1"
                     /translation="MNYIELLKNNKNIRILASVQFIVYFGAWFSQTGVFTLLVELNAP
                     TWATATSAMLAFLPGVLLAPINGVIVEKNKPKKLLLSMISIELISIFCLIFVTSLSML
                     WLLFILIFIRLCVASIYFQAEMSLLAKILTPQELKLANEMHSVIWAISYTAGMASAGI
                     FIYFLGVKTAFLFDCILILIGISFLVRLSIPDFHHKTQSRFFTMIKEGFFYVLNNKII
                     FHLILLHAFIGLTAYETLVTLLAQHQYKEVLSAALVIGFLNAVRACSLAIGPMVLSKF
                     INDKNLFYMYLGQGLGIILWALTQFNFYISFLGLIGAGFFTSALWAYTYTMIQKNADK
                     EYHGRVIAYTDMIYLSFSAIISMLMGFLFEIGLSLELITGLLGMIFIFVAFYWKWFYK
                     KYL"
     gene            complement(30553..31641)
                     /gene="nusA"
                     /locus_tag="ACJFD7_000086"
     CDS             complement(30553..31641)
                     /gene="nusA"
                     /locus_tag="ACJFD7_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor NusA"
                     /protein_id="HGG0858942.1"
                     /translation="MEKIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEF
                     FVDPKNLNLYQKITIVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENL
                     GRTAVNTLHKELEYHIQKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRA
                     FLPRKNRIKGEKFKIGDVVKAVIRRVYTDKGIKIELSRTSPKFLECLLEAEVPEIKDG
                     YVNIIGCARIPGERAKIILQANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFT
                     NESEILISRALAPAIVNSVKIEDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIE
                     LNELSSSQLNNAISNEEAMKNLQDLFKI"
     gene            31768..32010
                     /locus_tag="ACJFD7_000087"
     CDS             31768..32010
                     /locus_tag="ACJFD7_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HP0268 family nuclease"
                     /protein_id="HGG0858943.1"
                     /translation="MELKLARTLINEKPKNISLEKIEEAIEKEGQKFFYFDKDNTHKQ
                     LIALVNHFEKKGVSIYHRTVKYGLDDNDFMYEVHIL"
     gene            32007..33308
                     /gene="miaB"
                     /locus_tag="ACJFD7_000088"
     CDS             32007..33308
                     /gene="miaB"
                     /locus_tag="ACJFD7_000088"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HGG0858944.1"
                     /translation="MSAKKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADL
                     ILINTCSVREKPVHKLFSEVGGFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVL
                     GARNISKITQAIKTPKFMGVDIDYDESEFAFADFRNSIYKSYINISIGCDKHCTYCIV
                     PHTRGDEISIPFNIIYKEAQKAIEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLE
                     ELSTIEGLERIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGY
                     AKEWYLNRALKLRELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYS
                     KRPLTKAATMPNQIDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEELRADNS
                     IAGRTDNNFLVQVEGSEELLGQFKEVKITNAKRMVLYGEIV"
     gene            33292..33921
                     /locus_tag="ACJFD7_000089"
     CDS             33292..33921
                     /locus_tag="ACJFD7_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HGG0858945.1"
                     /translation="MGKSFKIHCLTYIIFILQWLIFLSCKKHYKGEKVDRKAGVILFW
                     HGKLALMPFAFRHYRQKNKKAYVMISHHKDGEQIAKIIKLFGLDTVRGSTSRGASSAL
                     RAAFKVLEQNDDIVITPDGPRGPYHSISDGSIILAQKKELKIRILNYEANRFWKFKSW
                     DKMILPKPFSKITYSLSEPLDILSLDKEKAKEFLMEQFDKISLADQFKE"
     gene            33923..34882
                     /locus_tag="ACJFD7_000090"
     CDS             33923..34882
                     /locus_tag="ACJFD7_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clan AA aspartic protease"
                     /protein_id="HGG0858946.1"
                     /translation="MLFLLKKIFPQLFISIILEDKKNIVKASIYRGNKLISSNEKTFD
                     KSENLLEYVKNLSKHFLFYHTALFLDAKEQGLIPSTNIQDCEHFNIGKISLQHILFNN
                     ALVYTATEHVEYYSELFEEYRGLDFLYSPFALLYYNMQKEKQPDDQILLYGFKQGHLL
                     AIIVAKGNTILYGDFKIFEQELGLELELPSEDNKEIENNNDDTEVTLDNFNEALNNKF
                     DLLDQENNLETLDNNDNFNLDELNQFSNDMELCRYIITSIEKFYNDDKYAGVFINGIL
                     LYSESDINISAIDFLESETFLEIKTKQINTLDLMIELMQKELK"
     gene            34879..35406
                     /locus_tag="ACJFD7_000091"
     CDS             34879..35406
                     /locus_tag="ACJFD7_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0858947.1"
                     /translation="MTYSFIQPRKKPIFTLFDKIWLGLFGFSILFILLVYFTYTIKIA
                     LINSSIDDEKQQVIVLQNQTKQNEMLYEILFDQSQIAKNFNTQNQIVKESLRNLFDII
                     VKTDNITLESVEQDEYSLKLIGVTPTREMFTLLLETPLKSIFDQSYTTYYRLDNGWYR
                     FVSISKQIPGVADER"
     gene            35396..35914
                     /locus_tag="ACJFD7_000092"
     CDS             35396..35914
                     /locus_tag="ACJFD7_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0858948.1"
                     /translation="MKDKSLEEIDLLKLIICALSFISVCTALILFLLLPTLKNYKQAN
                     LRENSQLAILKAAKSKFDFSEDKISTLRSENNKSLEQFEQNFNIGNFDIFLQKYFQNV
                     KIQETKPEKQEKYLKNRLAIKATMNNPRRLYDFIDALKNYNNLIKLDYPLNLKAGEQG
                     ISIDLTLKVYSS"
     gene            complement(35906..37198)
                     /gene="thiC"
                     /locus_tag="ACJFD7_000093"
     CDS             complement(35906..37198)
                     /gene="thiC"
                     /locus_tag="ACJFD7_000093"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HGG0858949.1"
                     /translation="MKTQMNYAKEGIFTKEMQIVAQKENLSKDFLLENIACGKIIIPA
                     NINHKSLDPNGIGFGLRTKVNVNLGVSNDCVDYSEEMKKVELAHKFDIEAIMDLSNYG
                     KTSRFRDELVNVSKAMIGTVPVYDAVGFLEKDLKQIGAKDFLDVVYHHAKSGVDFMTI
                     HAGINSRAAHIFKQSKRLTNIVSRGGSVLYAWMMMKDAENPFFEYYDDLLDICLKYDV
                     TLSLGDALRPGSTHDASDGAQISELIELSLLTQRAWDVGVQVMIEGPGHMAINEIEAN
                     MQLEKRLCKGAPFYVLGPLVTDIGAGYDHISGAIGGAVAAASGADMLCYVTPAEHLRL
                     PNLEDVREGIVATKIAAHAGDIAKLPKERARDDEMSKARQEIDWEKMFKLAIDGEKAK
                     KMFNERRPDDLNSCSMCGKMCAMNTMNQILKGEDVSLA"
     regulatory      complement(37255..37359)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(37373..38143)
                     /locus_tag="ACJFD7_000094"
     CDS             complement(37373..38143)
                     /locus_tag="ACJFD7_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020246882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HGG0858950.1"
                     /translation="MSLQQIDQIISILNKQSKPYDWVMQEFAKVEELKNFDLDLETFE
                     LLGLGLTLNKDNIFILKTRTTKIKDEIFCIVDIESTGGVSKGEILEIGAVKIQNSKEI
                     GRFQSFVKVKEIPENITELTGITYEMVENAPSLTKVLSDFRLFLKDSIFVAHNVRFDY
                     SFISKALNECGFGILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDAL
                     AAAEIFKYCLGKLPYHIKTTEELINFTKTATHKAKINI"
     gene            complement(38140..38787)
                     /gene="rpe"
                     /locus_tag="ACJFD7_000095"
     CDS             complement(38140..38787)
                     /gene="rpe"
                     /locus_tag="ACJFD7_000095"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HGG0858951.1"
                     /translation="MYVAPSLLSANFLKLEEEVKAIEAAGADLLHIDVMDGHFVPNLT
                     FGPCVIEKISTISKLPLDVHLMVKDVSKFIDLFIPLKPKFISFHMESEVHPIRLCEYI
                     RSQGIHPAIVLNPHTPIDSIKHMLEFVDMVLLMSVNPGFGGQKFLPLVHEKIKELRQM
                     IDKKNAKVFIEVDGGVNGLNASDLEESGADILVAGSYIFSSNDYKTAISSLKLEF"
     gene            38927..39121
                     /gene="rpmB"
                     /locus_tag="ACJFD7_000096"
     CDS             38927..39121
                     /gene="rpmB"
                     /locus_tag="ACJFD7_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HGG0858952.1"
                     /translation="MARVCQITGKGPMVGNNVSHANNKTKRRFLPNLRTVRVTLEDGT
                     TRKMRIAASTLRTLKKQNSK"
BASE COUNT        12816 a         7351 c         5211 g        13795 t
ORIGIN      
        1 aaaattacta gcattaaaat aaaaatttga gccaagttaa aaaacaacaa agataaaaag
       61 gattattaca agataatgaa gaaaaaattt gattatttaa taaaattatc tgatattaaa
      121 aaagtaattg cgttttaaaa tagcctaaaa gctcttcttt agcttttaaa atatcatcag
      181 tatttaactc aagatcaatc ttatctggtt ttttataagt tttatcataa tactccaaaa
      241 gcataacaat aagcttttgc cattcttttc tctcataact ttgaagcaaa tcttggcgta
      301 aatttaagct gatataagga ctgatttttt gcacacattg ttgaaatttc aaaggagtca
      361 ttttttcttg ataaattttt tgtattcttc taacgcgatt ttccaaagaa caaaaacaat
      421 aaattttaaa agccttttgc attttttcat aaaatttcaa aggtaagata atatccccta
      481 ttttgcgact ttcgctttct atgaaagcaa aattttctaa attttgaata ttgtgaaaaa
      541 gttctgcttc aaaagctttt tgcgtaggtt gttttcctaa aatatcacca aaagacgagc
      601 ctaaatgatt tgccattttt tctaaattta tagcttgtgg gagttgttct aaaagctctg
      661 tttttccaca acctgtatta ccacaaagag caaaaaaatc aaaatttatt tcattttcga
      721 aataatgcgt tacaaaagtt ctataagctt taaacccacc ttttaaacgc accaccctaa
      781 agccaagctc actaaaatca ctgcgataga ctttgaacgc aaacccccac gagaacaata
      841 aatccccacc ttttctccta tgcgaaaatt ttgagtgatt tctaatatat gcttagcggt
      901 attttgacaa atataactcg cacccatagc cttagctaaa gcttgatttt tcttataaat
      961 tgttcctatt tcttgatatt cttcatcatt gagtgcataa aaatttaaag ctcctatcaa
     1021 gtgagaatgc aaaaattctc tagggcttct tgcatcgatt aaaaaagaga aattttcttt
     1081 ttgaaactct acaaattcaa cttcactgag catttttaaa agccaaaaca agtttttgat
     1141 aaacttgctc tatattagtg ccacaaaccc tagtttctcc tatggttgtg ataaaatttg
     1201 tatctcctga ccagcgtggc actagatgat aatgacaatg aaaagctatg ccagctcctg
     1261 catccttgct taaattcata ccgatattca ctccatttgc atgaatttgc tcttttaaaa
     1321 tttttacccc caaacgcaca aaataactca tttcttgcca aatttcatca cttaaatttt
     1381 ctatatgctc ttcatgtata taaggaatca ccataaaatg ccctgcagaa taaggatagc
     1441 ggttcatcac tccaaaacaa tgctttgctc taaaaatcac gcctaattct tcatcgcttt
     1501 tgatcttatt agcacaatca caaaatggac aaatgctttt ttctttttca aaatactcac
     1561 tccgccatgg tgcatacaaa tactgcattt tccctcctta aagcaaagct tttaaagcct
     1621 ttccttcatc tttttcgcgc ataaaatatt cgccgattaa aaaagcatca acgcctaaat
     1681 tttgcaaatg ctctaaaaat tctttatttt ctaaaccact ttctgcgatg atgatttttg
     1741 aatttgggat ttgtggaata agtttttcgc acaaactcat atccatagta aaatcctcta
     1801 aattacgatg attgatacca atgatatccg ctccagcaaa aatagcctta ctcaaatcct
     1861 ctttatcatg aatttcaacc aaagcctcaa gacctaaatg tcttgcaaac tcaagcagtt
     1921 ttttaagctc tttcatgctt agcattttag cgattaataa tacaaaatcc gccccataaa
     1981 ccaaagcttc taaaatttga tactcatcaa agataaaatc ttttctaagt aaaggaattt
     2041 gcgtataacg gcgtataaga cttaagtatt ctaaagaacc tttaaaaaaa tgcggctcag
     2101 ttaaaacaga aatcgccgca gctttgttct tctcataatt taaagcgata ctcaaaggat
     2161 caaagtcttc tctaatgact cccttgctag ggcttgcttt ttttacttct gctatgattt
     2221 taacttcttt ttctactctt tttaaagcct taatcacatc ttttggaaag aaaggatttg
     2281 aagctaaaga acgccctagc atatcataag gaagttttag tttgcgttct tttaaatctt
     2341 cttttgtttt ttcaaaaatt ttatccaata tcatggtttt atacacgcct ttatcgcttt
     2401 tatatgaact ttactctcat cagaatttgc aaattcttta tcatctaatg tttgttttaa
     2461 aatttcccat gcttgcttac aatcgcctag tttataatac ccccaagcta aagaatctaa
     2521 ataatacaaa ttctgtggat ctttttctaa ggcaagtttc acaagctcta tacctttttt
     2581 aacatctaaa tcataatcta taagcaaata tccatagtag tttaaataca aagcattgct
     2641 atctttatcg atagcctgtt cgaatttttc ttttacagaa ttaattactt ttggagtgat
     2701 ttttttagct tcatttgcag cttcaaattc aaaaactgcc gctcgtagaa gatattcttt
     2761 attttttgtt ttatgataaa gagctaaact cattttttta gcatcatcaa agcgttttaa
     2821 attctgatac aaagcgagtt taatgtcatc atctaaatca tactgcaaag aaatttttaa
     2881 agcttcttct gttttgcctt gagaatttaa aagctcaact aaagccaata caaaactttt
     2941 atttttggta agttgataaa gctctttata tatacttttt aaagcttcga tatttttttc
     3001 atcaaaataa attttagcaa gcaagacgca agttttgaga gtgcaaccat tggtttttct
     3061 tgaaaattct aaaacatttt taatatttaa agtatcattc aaaatcgcat aaattcctat
     3121 gagtttaaat aaaatttctt cattttgcac ttgattataa gcagatctat agtattttgt
     3181 agcatttttt aaatcatttt ttttaaccaa aatatcacca taaagctcta aatttctagg
     3241 atcactatcc ttttttgtta aaagttcttt cataagtttt tgagcattgt tgatatcatt
     3301 tgaatttaaa gcataaagag cactaagtcg cttaagatta tcactcttat caagataagg
     3361 cttggctata ttatttatct cttctttttt atcaaggttg tttgctaaag taagtaaaaa
     3421 tgcattttct aaaaaattag tattattata atcttgataa agacttaaaa attcatctct
     3481 ggcttctttg tattgtttat aatactcata attataagcc ttcataaccc ttaaatcaaa
     3541 atcattgctt ttatattttg tataatcagg ataaacaaca ttgatttttg aacttccaca
     3601 agctgccaaa aaaaaggctg ctaagacaaa taacaaatac ctatacattc tttttctaat
     3661 tccttttgat gtgttttaaa atattcccaa aatggaaaag ttctgcattg ttttggacga
     3721 aaatcgtaga tactacaatt tcttttttga gtatcaaaaa aaatgcaagc aaaaccatct
     3781 tcacattcga cttccttaaa actcatttta aagcccactt ttctcaagta tttttcagca
     3841 aattctttgc tttctaaatt taaatgcttt cttaatactt ctaattcttc cttgctcgca
     3901 aaaatattgc cactttctcc agtgcaacac tttccaccgc atttctcaca agcattttca
     3961 tcaaaagcat aagaaaaatt tttatcaaat atcataactt tttaacctaa atcttaagtg
     4021 aatttcttgc atttgtttgc ttaaaatttc attttcatat acaaaaaaag gaggtaaaat
     4081 ctcacaaggc gattttgaac ctttttttac ctgtatcaaa acaagtcttg cttttttgct
     4141 ttgatgtgta tgtacaaagc aaagctttgt tattttcatt ttcatatctt ttaaaataaa
     4201 acaaatttca tctaaagcta aagcttcata gcaaaaatac aaagtaccat ttggcttaag
     4261 catagaattt gttttagcta aaaagctatg caagggtaaa aattcctgaa atttacttat
     4321 agctttatgc tgatcttcac tcttgtaagc tccttgtcta taaaatggag gattgcagac
     4381 tatgaagtca aattttttta tgatttgaaa ttgattaaaa tcatcatgaa aaatatcgcc
     4441 ttgtattttg ttggatttta aatttttttc aatcaatttt atattttctt tttgaatatc
     4501 aatcaaagat aaacttaaat ttgcaatatt ttttttaagt aaaataccta tgataccaca
     4561 gcccgcacct acatcaaaaa cagcgccttt aattccttgt tttaaaataa aatcagctaa
     4621 aattaaagaa tcactattgt aacgataccc ttgtgataat tgtgctagcg taatcagatc
     4681 tgacatatat tttaatgcgt tggaatttta atgcgttttg gagattgttc tttaaatata
     4741 tttcgttctt ttgttatatt attatcttct ttaaaattta ctgggctttg tgctgccaaa
     4801 aaagaaatta caaaagttat aaaaaaagca atttttatca taataacacc ccataaaatg
     4861 gtgtccacgg cgagattcga actcacggcc tcaaaattag gaattttgcg ctctatcctg
     4921 ctgagctacg aggacagaaa gcgggaaaaa tcccgctaaa aatttaaccg tttctttttt
     4981 tgatgatttc atccgcaaca tttttaggaa cttcatcata gtgatcaaat tccatagaat
     5041 aagtcgcacg accttgagtt tgacttctaa gatcagtaga ataaccaaac atttcagcca
     5101 aaggacaaaa tgctgtgatg attttatttc caccacgctc atccatgcta tttacttgac
     5161 cacggcgttt gttaagatct ccaataacat cacccatgta atcttcagga gtttctactt
     5221 caactttcat cataggctct aagatcacag cacctgcttt tctagcacct tctttaaagc
     5281 ccatagaagc agcaagttta aacgccatct cagatgaatc cacctcgtga taacttccat
     5341 cataaacagt tactttaaca tcttccacag gataacctgc taaaacacca ttttgtaatg
     5401 cttcttgaac acctttatca actgcaggaa tgtattcttt tggaattact ccacctttga
     5461 tatcattaac aaattcatat ccactacctg gctcaagtgg ttcaaggcgt aagaatacat
     5521 gtccatactg accacgacca cctgattgtt tagcgtattt gtattcttgt tcaacagttt
     5581 ttctaatagt ttcgcgataa gcaacttgtg gttgacctac ttcagcttca actttaaatt
     5641 cacgaagcat tctatcaacg ataatttcaa ggtgtaactc acccatacct gaaatgatag
     5701 tttggccact ttcttcatct gtagaaactc taaaacttgg atcttcttgt gctaatttat
     5761 ttaaagcaat agacattttt tcttgatctg ctttagtttt tggctcaact gcaacagaaa
     5821 taactggatc tggaaaatcc attctttcaa ggattacctt atctttttca cttacaagag
     5881 tatcccctgt taaagtatct ttaagtccta caacagcacc aatttcgcct gcgtaaagca
     5941 ctttaatctc ttctcttttg ttagagtgca tttttaacaa acgaccaatt ctttcttttt
     6001 tatctttagt tgagttataa gcataagaac cactttctaa acaaccgcga taaacacgca
     6061 cgaaagtaag ttgtcctaca aatggatctg tcataatttt aaatgcaagt cctgcaaact
     6121 cgccatcatc agttgatttt acagaaactt ctgtgccatc ttcatattca cccttgatat
     6181 ttgccacttc atcaggagct ggtaaataag ccacaacagc atcaagtaaa ggttgaaccc
     6241 ctttattttt aaacgctgta ccgcaaagca taggaacgat agaaagactt aaacatcctg
     6301 ctttaatccc tgttttaatc tcttcaaggc ttaattcttc tccgcctaaa tatttttcca
     6361 tcaactcatc tgaagtttca gaaactgctt ctatcatttt tgtgcgatat tcttctgcct
     6421 tttctttaag ttcagctgga atttcttttt ctacataatc cgttggctta gtatcatctt
     6481 cccaaactaa agctttcata gttacaagat cgattacgcc tttaaaatta tcctcagcac
     6541 cgattggaat ttgaagtgga actggattag cttttaaacg gttgcgaatt tgatcttcta
     6601 cattataaaa atttgcaccg attctatcca ttttgtttac aaatactatt cttggaacac
     6661 cgtatttatt tgcttgtctc caaactgttt cactttgagg ctgcacccca cccactgaac
     6721 aaaataccgc aacagcacca tcaagaacac gcatagatct ttcaacttcg attgtaaaat
     6781 ccacgtggcc tggagtgtca ataagattga tttgatgatc tttccaaaaa caagttgtag
     6841 ccgcagaagt gatagtaatc ccacgctctt tctcttgctc catccagtcc atagttgcag
     6901 caccatcatg aacttcaccg attttatgac tcataccagt aaagaaaaga attctttcag
     6961 atgtagtcgt tttacccgca tcaatgtgag cagcaatacc gatatttcta acttttttta
     7021 aaggagtatt tcttgacata cacactcctt cttaccaacg atagtgagca aatgctttat
     7081 ttgcttcagc cattttataa gtatcttctt tcttcttaaa tgaagcacct ttgctatttg
     7141 ctgcatctaa aagctcagct gcaagtttat caatcatagt tctttcgctt ctttttcttg
     7201 caaaagaaat aatccaacga atcgccaaag cttgttgtct agcaggacga acttcaactg
     7261 gaacttgata agttgcacca cctacacgac gagattttac ttctaataaa ggcttaatat
     7321 tttcaatcgc atcattaaaa atatcaatac cttttttctc gccacctttt ttatcaatag
     7381 cttccaaagc accatacata attgttgtag ctgtgctttt tttaccatca tacattaaag
     7441 aattaataaa ttttgtgatt actttattac cataaatcgg atcaggcaag acttctctta
     7501 ccggagcttt tcttcttctc attatttttc cttcaaattt taaattttac tcaaacaaaa
     7561 tcaaatctaa cggatttgtc tgtatgaatg attattttgc agcgcctgct ttaggacgtt
     7621 tagcaccata tttagaacga gaaactgttc tttttgcaac acctgctgta tcaagagcac
     7681 cacgaacgat gtgatattta acccctggta agtcttttac cctaccacca cgcactaaaa
     7741 caatgctgtg ttcttgcaag ttatgacctt caccgccgat atagctgatc acttcaaagc
     7801 cactagtaag tcttactttg gcaacttttc ttaacgctga gtttggtttt ttaggtgttg
     7861 tagtataaac cctagtgcaa actccccttc tttgtggaca atttttaagc gctggagatt
     7921 tagatttttc taaaactttt ttgcgctctt ttctaaccaa ttgatttatg gtaggcacaa
     7981 taattccttt ctttaaaaat gtaataaact ttggatgata tctaattttt gcttatactt
     8041 tagttaaaaa gattgaaaat gaggaaatat agccccgaag ggctataaaa tagagtttta
     8101 ttcttgttct ttaagtttta aattttgttc gccataaagc cctgttccaa caggaatcat
     8161 tctacctaga ataacatttt cttttaaatc ttctaagtag tcaaatttac ctgctatact
     8221 tgcttcagtt aaaactttgg tagtttcttg gaatgaagcc gcagaaatca cactatcact
     8281 tccaatcgct gctcttgtta cacctaaaag cacaggctcg gcaatagctg gttctccacc
     8341 cattctaatg attctttcat tttcttcacg gaatttacgt cttgaaacca aatcaccttc
     8401 aataaatttc gtatgtccac tatctacaac ttttacttgt cttagcattt gagaaacgat
     8461 aacttctata tgtttatcag aaatcacaac accttgtccg cgataaactt gctgaatttc
     8521 agaaatcaaa taataatgca aggctttttc acctaaaatt ttaagcacat catgactcga
     8581 aacaactcca tctgtaagtt tttcacctgc atgaataaac tctccatctc ttacttgaat
     8641 atgttttgat ttgtcgatta aatactcagc acttgttcca tcttctgctt ggataataat
     8701 tctttcttta gaacgcaaag gcttatcaaa acgaacaaca ccatcaattt ctgcaatcac
     8761 agccgcattt tttggttttc ttgcttcaaa aagttcagaa actcttggaa gacctcctgt
     8821 aatatccttt gatttagctg ctgcttttgg agtttttgct aaaatatctg cttgagcaat
     8881 tttatcgcca tcatgaacaa aaataacggt ttttggttca aggtgataac gcacagcttt
     8941 atcacctttt cctgcaatta ccaaagttgg tctaactccg ctaggtaaat actcattaat
     9001 tactaaagaa cgcttacctg tagcttcatc aatttgctca tcagcactat aacctgcttc
     9061 aatatcctca aagcttacaa caccatcaat ttctgcaatg atagtattat tataagcatc
     9121 ccattctgca atcacttttc tttctttttt aggagcactt gcaatgatag tatttgcgtc
     9181 atcgattttt tcactatcgt taaattctat cttagattct cttgggatat agtgtctttt
     9241 tgcttctcta tcattttcat cagcaatcac tacaaagaat cctttttctt taacaatatc
     9301 acctttttta acatttttta ctctatctaa accatcgcct ttaaggatgt aaaatttgag
     9361 tgttcctttt tcgcctgctt tgatattttg aactacaggc tcgccatctt ctactaaaat
     9421 ttcactcgca aaaggaatac gatttggtac attccaaccc tctttaatca cttctacgat
     9481 actttcattt tcttctactt gcatgccgct ttgatatggc aaataaagtt ttccatctat
     9541 actgccactt acacctgcta attcatttgg tttagcaaga tcgtattttc ttagtatgta
     9601 ttttacttct tgttttttat ctttaataga aacaatcaca tcttcatgaa tattttctat
     9661 attaatcaca cctttaaatg gagttttgat ttttggctcc acaagtaaaa ccgccgcatt
     9721 tctacgattt gctacgatat ttttaccttg tttgttttta taagttttaa gattataaaa
     9781 tcttataaaa ccttcttttt gtgcgcttac ttgtctatct tgtaaatccg tacttgcagt
     9841 tcccccgcta tggaaagttc ttagagttag ctgcgttcct ggttcaccga tagattgagc
     9901 ggaaataatt cccactgctt cgcctggttt tactaattta ccttcaccaa gattgatacc
     9961 ataacatttt gcacaaattc cttttttagc tttgcaggtg ataggagtgc ggatattgac
    10021 actttttata ccgctttcgc caagaatttt tgctttttcc tcatccatta aagtaccttc
    10081 tgcaaaaagc acagaatttg taataggatc aatcacatcc tcagctaaaa ccctgcctaa
    10141 aattctttct tctaaagttt ctataataga actatctgcg gtaatttcat tgatttcaac
    10201 accctcatgt gttccacaat cttcaatggt aatttttaca ttttgtgcaa catcgatgag
    10261 ttttcttgtc aaataacccg catttgctgt tttaagagcg gtatctgcaa gaccttttct
    10321 agcaccgtga gttgaaataa agtattcaag aacatttagc ccttcacgga aatttgaaat
    10381 aataggcgtt tcgataatag aaccatcagg tttagtcata agtcctctca tcgcagcaag
    10441 ctgagaaatt tgagctgcac tacccctagc accagaatct gccatcatat aaatagagtt
    10501 aaaaccttct ttatcttttt ctacaagctt catcatttct tttgaaagaa cattgtttgt
    10561 acttttccaa atatcaatga ttttattgta tctttcccct gaagtaatca aaccgagatt
    10621 ataagaattt tgaatttctc ttacttgttt ttttgcttca tcgatagctt tttgtttatc
    10681 attaggaaca ataatatctg caatcgaaat tgaaatacct gctttagttg catattcaaa
    10741 acctaaattt ttaagtctat ctaagaaact tgctgtaatc tctaaaccac cttgtttata
    10801 aacataatct acaagcgcag caatgtcttt tttctttaag actttattcc aactattttc
    10861 aggcacaaaa tcaggcaaga tggatttaac aatcaatctt cctgctgtag tggtaatctt
    10921 tctaccatct accatagttt gtatgctcgc atgaatatcc aaacacttgc tttcaagtgc
    10981 catcatcact tcatcaatgc ctgtacaaat tttatgcgaa cctttagcac ctgctttttc
    11041 caacgaaaga taataaattc ctaaaaccat atcttgcgat ggaacggtta cagacttacc
    11101 gcttgctggc aaaagaatat tcattgatga aagcataagc accttacatt ccgcaatggc
    11161 ctcttgagaa agtggcacat gcaccgccat ttgatcccca tcaaagtctg cgttaaatgc
    11221 tgcacaaacc aaaggatgaa gttgtatagc cttaccttcc actaaaacag gatgaaaagc
    11281 ttgaatagaa agtttatgta aagtaggcgc acggtttagc ataacaggat gcccttttac
    11341 tacctcttct aaacattccc aaacttcatt ggttttattt tctatcattt ttttagcttg
    11401 ttttactgtg gttgcataac ctttttcttc aagcttagct aaaagatgtg gcttaaagag
    11461 ctctaaagcc atttttttag gtaaaccaca ttgatccatt ctaagttttg gacctacaac
    11521 aataacgcta cgacctgaga aatccaccct tttacctagt agattttgtc taaaacgtcc
    11581 ttgtttccct ttgatgattt cacttaaaga ttttaatggg cgtttatttg ctccttttac
    11641 agcattagca cgacgaccgt tgtcaaaaag tgcatcaaca gcctcttgaa gcattctttt
    11701 ttcatttctg ataatgattt caggtgcatc aagttccata agttttttaa gacgtgtatt
    11761 tctattgata acacgacgat ataagtcatt cacatcagaa actgcaaatt ttccaccatc
    11821 taaagccact aaaggacgca aatctggcgg taaaactgga agatttgtaa tcatcatcca
    11881 ttcaggacga tttggtacgg cttcatcact atcggtattg gcgtttaaat ttgaatttaa
    11941 gaaattttct actactttta agcgtttaat gatggttttt ttcttagcct ctgaatttgt
    12001 agccgccatt tcttctttaa gctgatttaa aagtgccaca agatctaaat ttgcaagtaa
    12061 atcacgaaca acttctccac ccattcttgc tttaaagcca ctattttcat agcgttgcat
    12121 taaattttga tattgctctt cgtttaaaac atcacaatat tctacttttt tggtgctttc
    12181 attatcatag aaagcatcgc ctggattttc aacgatataa gcttcataat aaagcacacg
    12241 ctcaagatct ttcatcttaa cacccaaaag cgttcctata cggcttggaa gagaattaac
    12301 ataccaaata tgagccacag gagttacaag ctcgatatgc cccattctag aacgacgcac
    12361 ttttgaattt gctacttcaa caccacattt ttcacactta acgcctttaa aacgcatttt
    12421 tttgtattta ccacaaagac actcataatc tcttataggt ccaaaaatct ttgcacaaaa
    12481 aagcccatct ctttcaggct ttaaggttct ataattaata gtttctggtt tttttacttc
    12541 tccataagac catgatttga ttttttcagg acttgcaagt ctcagttgaa atgcttcaaa
    12601 atctctaggt cttgcatctt ctttaatttc tattacttta aatttactca ttatcttcat
    12661 ccttatcaaa aatctcaaca tctaaagcaa gagatttaag ctcattggtt aatacaaaaa
    12721 atgtttcagg aattcctgtt gctggaacat tttcaccttt tgtcaatgct ttataagcac
    12781 taaatctacc ttctacatca tctgatttta tggttaacat ttctcttaaa gtgtgagccg
    12841 ctccataagc ttcaagtgcc caaacttcca tttctccaaa tctttgtccc ccaaagagtg
    12901 ctttaccacc cacaggttgt tgggtaacca agctataagg tcctgtactt cttgcatgaa
    12961 ctttttcatc aaccaagtga tggagtttta gcatatacat acatcctaca tgaacacgct
    13021 ctgcaatttt ttcccccgtg cgtccatcat aaagttctgt tttgccatcc atatctatct
    13081 tagccatttt aaaaagcttg ctaaattctt ctatatttac accttcaaaa acaggagtag
    13141 aaaatttaac tcctttactc cagtctctag catagtttaa aagctcttca tcgcttaagc
    13201 ttttaataaa ttctttttcg tttgcaagtc ttggaataga acaaatttca agcattttcg
    13261 ctcttaattc tttaagaaaa tctttttgct ttctatcaaa aatttcttga atttgatccc
    13321 caagtctaag tccaactaaa cctaaatgac tttctaaaat ttgacctata ttcatacgac
    13381 ttggaacgcc aagtggatta agcgcaatat ccacactctt accatttggc aaataaggca
    13441 tatctacttc aggaactata gttgaaacta tacctttatt tccatgacgt cctgccattt
    13501 tatcaccgac tttaagcttt ctttttgtag caatataaac tttaacaagc ttaattaccc
    13561 cacttggtaa aatatcatct ttttctaaaa tttcaagctt ttcatcgtgt tctgctttta
    13621 attttttctt ctcattttgg aaatgatttt ttaaatcatc gtattctttt tgaatctctt
    13681 tagaataagc tttaatcaaa gttgttaaag taaaacgatt gattttttca agttcgctaa
    13741 tatctgcagt ttgtcctttt ttatagtttt tatctccaat tttttgatcg ctatttaaag
    13801 aagctttgga aagaagagca caaacacgaa gcatttcttc tctatccatc atcaaaagtc
    13861 tatcatgatg ctctttttct aaagccattt tttctttatc ataagatttt attgcgcgat
    13921 catctttttc atagcctttt ttagtgaaaa ttttaacatc cacaacaaca ccctctaaag
    13981 aagcggttgc ataaagggat ttattcacaa catgtcctgc tttttctcca aaaatcgctc
    14041 ttaaaagtct ttcttcagga gttggtttaa cctcaccttt tggagaaacc ttacccacca
    14101 aaatcatacc tggtttgata tgggtaccaa tttttgcaat accgctctca tcaagatgcg
    14161 caacatcttc ttcttttaca tttggaatat ctttggtaat ttcttctata ccgtctttta
    14221 gttctcttgc ttcaatttct ttttcataaa tgtgcacgct tgtaaaagta tcttcacgaa
    14281 taattctctc acttacaact atagcatcct catagttata accattccaa ggcataaaag
    14341 cgattaaagc atttttacct atagcaagtt cgccttgatc catagaagga ccatctgcga
    14401 taatttgtcc tgcttttact atatcacctt ttttaacaat agggtgttga atataatttg
    14461 tattttgatt ggttcttaaa tttttctcca tagtgtaatg gtcaataaat ggacctttat
    14521 catcttcacc taaaatgaaa atgcttttat tatccacttt ctcaaccaca ccgccacgct
    14581 ttgctttaac agcttcccaa gcatcacgcg caataatttg ttccatacct gttcctacta
    14641 tcggagctga agcagtaaga agtggcacag cttgacgttg catgtttgaa cccattagtg
    14701 ctctgtttgc atcatcgtgc tctaaaaacg gaatcaaaga agccgcaacc ccaacaacca
    14761 tacctgagca aagatcgatt aattgcactt cttcgcgtct tgcaagtata gtttcaccat
    14821 cttgtctagc ctcaacaaat tcttctacta tattgccttt agcatcaacc ttagttgaag
    14881 ctggtgcgat aaataagcct tcttcttgtg ttgctgtaag ataaacaact tcattagtca
    14941 ctttaccatt tacaactttt ctatatggtg cttcaacaaa gccaagttcg tttacttttg
    15001 cataagtaga aagagtgtta atcaaaccaa tattttgacc ttcaggtgtt tcaactggac
    15061 aaattctacc ataatgtgtc gcgtgaacat cacgcacttc aaaacctgct ctttctttta
    15121 caagtccacc ttcaccaagc gctgataaac gacgcttatg agtaacctcg cttaaagggt
    15181 tggtttgatc cataaattgc gaaagctgac ctcctgtaaa aaattcaatg atagttgtag
    15241 taatcatttt aggattgatt aaatcataag gcattacttt atcaagatcc gcatttaaag
    15301 aagtaaattt atctctgatc gccttttgca tttttgcaag acctaaatga agttcattgg
    15361 ctaaaagttc acctatagaa cggatacgac gatttcctaa atgatctcta tcatcaatat
    15421 gtcctttacc attttttact ttaattaaat attttgcagt tttaataata tcttcattag
    15481 tcaaaacagt aacatactca ggtacttcaa gacctaattt atggttcatt ttcatacgac
    15541 ctaccttggt aagatcgtat ctttcaggat tgaagaataa atcatttaca aaagccttcg
    15601 ctgcatcttt taccacaggt tcacctgggc gcataacttt gtaaattcta atcgcagcta
    15661 aatcattttc atcatcgata ttttcacttt gtttaagaag ttttagagtt tctccatctt
    15721 gagcaaagga gttaataatc gctgcatcaa cgccattagc caagtcattt gctatatcaa
    15781 aacttttttg ctctttaatc ttagcaagct tactctcatc taacaaagtt aaagaatcaa
    15841 ataaaacctc tccactttct ttatcaataa taggatttgc taaataacga ttaagtaaaa
    15901 tttctacagg atattctatc cattttaaac cgtctttaat aagctgttct gcttttttct
    15961 ttgtaagtct ttttccagct tgatgaacga tttttccttt ttcatcttta atatcatatt
    16021 ctattctatc cataaaatca tttggattaa attctgttaa aaatttatct tttttcacat
    16081 gtatagtctg aataggataa aacaacttaa taatatcttg ttttttatac cctaaagctc
    16141 taaaaagcat agttacagga acttttctac gcttattgat tcttacatac aaaacatctt
    16201 tggcatcgta ttcaaaataa agccacgaac cacgatcagg aataatttgt gctgtataaa
    16261 caagcttatt tgcaaccgtt gaactttctt cttctttaaa aataacacca gggcttctat
    16321 gcaattgatt tacaaccacc ctctcaaccc cattaatgat aaaagataca cgatctgtca
    16381 ttaaaggaat ttcgcggata taaatttctt gttctttaat atcttttacg ccaacttttt
    16441 cccctgtttt ttcatctttt tcatgcagag taagacggat tttcattttt aaatttacag
    16501 aataagtcaa acctctttcc atgcattcgc gaatggtata ttttggcttg cctatttcac
    16561 tactaacata ttcaagactc aatctatttt gcggatcatg aataggaaaa attgatttaa
    16621 aaactttttc tataccactt tcaccattat caagatttaa aaaataatca aaactctttt
    16681 tttgtaattg tagaagattt gggatttcta tttgttttga aatgtttgag aagtctactc
    16741 ttaaacgatt tcctaattta ttatctaaca tatcgcacat acctcatggt aaattttgta
    16801 aatttaaaaa agaagaccta aaaattaggt aaaaataaaa aaagaagact tgccttggca
    16861 aatcttcttc taactttaaa gcttaaaatt acttaagttc tactttagca ccagcttctt
    16921 caagttgttt tttagcttcc tcagcttcag ctttagccac accctctttt agagttgaag
    16981 gagtttgctc aactgcatct tttgcttctt taagaccaag gcctgtaaga gcacgaacga
    17041 ttttaataac ttcaatcttt ttagcaccgc catcagttaa aacgatatca aattcagttt
    17101 tttcttcagt agcagctgca gcaccaccag ctgcagcacc accagctatc attacaggag
    17161 cagcagacac accaaatttt tcttcaaact cttttacaag ttctgataac tcaagaacac
    17221 ttaaatttga aatatattct aatacatctt ctttagagat tgccattttt tatcctttta
    17281 tttaatttat tcagattctt ttttattttt aagcgcattt aaacctattg tgaaattggt
    17341 aattggcgca ttccaaactt gcaaaagcat agcaagcaac tcattgcgtg aaggcatttt
    17401 agcaagagct ttaaccttgg caacatctgc aacttcgcct tcaatatgag ctgttttgat
    17461 ttcaaattta tcgttatttt cttcaaattt agcagctact tttgaaacac ctagctgatc
    17521 ttcgccccaa agataaatat ttgtatcttt aagaactaga cctgttttac cggaattgtt
    17581 aagagcaatg ttagccaaag tatttttaac aatttgaact tttacattgt tttctcttgc
    17641 attatttcta agctcttcta gtttttttgt gctaagacct ctgtaattac aaactacaat
    17701 agcttcacta gctttaaaac cttcttcaag tttagcaata atctcaactt tttcgcttct
    17761 agtcacattt tctcctttcc gattgagatt tcaagtagag tggaaatcca attaagctta
    17821 cgcctcgact atcttcaatc taaaataaac atttcaaaaa atcaaaaatt ttttcaaatg
    17881 tttattttaa aacaaaagag ttgcaaaaaa gcaactctta tttcatatca agcaattctt
    17941 gtgtttcaag ctttacagaa gggctcattg tcaaagataa agccgcattt ttaatatatc
    18001 tacctttagc tgcggcaggt ttatgtttgt taattgcctt tacaaaagtg ctaacattat
    18061 cccataattg ttctttggaa aaacttactt taccaagacc tgcatggata tttccttgct
    18121 tatcaacacg gaaatttacc tgaccacttt ttgcattatt aactgcttga gcaacatcca
    18181 tagtcactgt tccagtttta ggatttggca ttaaaccttt tggccctaaa attctaccaa
    18241 ctttaccaac aagtcccatt aaatttggag tagcaatcaa aacatcaaaa ttcatattac
    18301 ctttttgaat ttcttctact aaatcatcgc tacccacaat atctgcacca gaatttttcg
    18361 cctcatcagc ttttgcgtct tttgcaatta cagcaacgcg aactttttta cccgttccag
    18421 caggtaaaac aacagatcct cttaccattt gatctgcatg tcttggatca acattgagtt
    18481 ttaaagcaat ttctacagtc tcatcaaatt tagcagactt taaagtcttt attgtatcaa
    18541 ttgcatcgct taaagcatac tctttatttg aatcaatttt ttgtgataat tcttttaatc
    18601 tttttgctat cttagccatt tattttctcc gcattttaaa gtgctaccgc cttctacctt
    18661 ggcggtgaaa ggattaatct acgatttcaa cacccataga acgagctgaa cctgcaataa
    18721 ttttagcagc ttgatctcta tctttagtat ttaaatctgc aattttctta tctactattt
    18781 ctaaaacttg agcacgagtt aacttgccca ccttattttt aagcggatta tccgtacctt
    18841 tagaaattcc agctgctttt ttgatcaaat ccgtagctgg cggttgtttt gtaataaaag
    18901 taaaactttt atctgcataa acagtgataa caacagggat attaaaacct gccatatctt
    18961 ttgttctttc attaaaagcc ttacaaaact ccataatatt aacaccttgc tgacccaaag
    19021 caggaccaac aggtggtgat gggtttgctt ttgtggcagc aatttgcaat ttaatttcgc
    19081 ctacgacttt tttagccata acaaatctcc ttacttgata taaattaaat tattttctca
    19141 acttgagaat ataagatctc cactggagtt gagcgtccaa aaatagaaac atttaatttt
    19201 aataaaccac gaaccatatc atactcttct acaattgcag taaagtttgc aaatggccct
    19261 tctgtgattc tcacattttc cccttcttca aaagaaatct ttggtttagg cgctgcacga
    19321 ttgtgaactt tttccaaaat caaattaata tctttttctg ttaaaggggt tggctttttg
    19381 gattctccaa taaaacgacc aacctttgga agagattgaa tgcgatgcca aagctctgta
    19441 tttaaatcaa gaagtgcaaa aacatatcct gaatacaaac ttctttcgct aatcttctcc
    19501 tttccattct taaattcaat aacatcttca gttggaacaa caatttcttt aagttgttct
    19561 tcaattccgt tatcttttac taaattttca atggctcttt taactgccat ttcactgcca
    19621 gcataagttt gaattgcata ccatttatga gtactcattt actctcctta cacgattgca
    19681 gaaacaatag aggacataaa ccaatccact aacgccaaaa acaaagaaat caccgcagca
    19741 accacaaaaa ctgtaatata ggcatttctt acctgttctt ttaaaggaaa aattactttc
    19801 cttaattcgg cttttgataa tttaaaataa gttattaatt tttccattta tttaaacctt
    19861 aattatggca gggcaagagg gattcgaacc cccaaccatc ggatttggaa tccggcgctc
    19921 taccgttgga gctattgccc taagggcgca agcttaactt tttaacttaa cttctttgtg
    19981 aagtgtatgt ttttttaatc ttgggcaata tttttttaat tctaattttt cagtagtatt
    20041 tttactattt ttataggtgc tataattaat atcaccacat tcttcacact ttaaaccaac
    20101 tttaattctc atttcaattt tccttaaaaa attaaagcca agcttttaac ttggctttat
    20161 taaattattt aataatttta gaaacaacac ctgaaccaac agttttacca ccttcacgaa
    20221 tagcaaaacg agttccttct tcaagtgcta ctggagcgat caagcttaca gtaattctca
    20281 cattttcacc tggcataacc atttcaacac catcagctaa tttaatcgaa cctgtaacat
    20341 cagttgttct tacataaaac tgtggtctat agttgttaaa gaatggagta tgtctaccac
    20401 cttcatcttt atttaagata taaacttcag cttcgaagtc agtgtgtgga gtaattgatt
    20461 ttggtttagc aagaaccata ccacggataa cttcttcttt tttagtacca cgaagaagaa
    20521 cacctacatt atctcctgct tcgccttgat ccatttcttt tctgaacatt tcaacacctg
    20581 ttacagttgt tgtttgagta tctttaatac caacgatttc gatagtatca cctactttta
    20641 caacaccttt ttcaattcta cctgtaacaa cagtaccacg acctgaaatt gagaaaacgt
    20701 cttcaattgg catcaagaag tctttttcag tatcacgagt tggagttgga atatagctat
    20761 caactgcagc cataagatcc ataatttttg ctgaccattc accatcttgt ccagctttag
    20821 cttcttcaag agcttttaaa gcagaaccag aaataatagg tgtatcatcg cctgggaaat
    20881 cataagagct taataattct ctaatttcca tttcaactaa ctctaaaagt tcagcatcat
    20941 caaccatatc tgctttattc ataaaaacaa caatatatgg aacgcctact tgacgagaaa
    21001 gaagaatgtg ctctctagtt tgtggcatag ggccatctgc agcagaaaca accaagatcg
    21061 ctccatccat ttgtgcagca cctgtaatca tgtttttaac ataatctgcg tgacctgggc
    21121 agtcaacgtg tgcatagtga cgattgtctg tttcatattc aatatgagaa gtagcaatag
    21181 taataccacg ctctttttct tctggagcat tatcgatatt atcataatct ttaagctctg
    21241 ctaaacctct tctagaaaga acagcagaaa tagcagctgt taaagtagtt ttaccatggt
    21301 caacgtgacc aatagtacca atatttacgt gtggcttatt acgtgaaaat ttttctttag
    21361 ccattttttt cctccgtata aaaaataaat tgagcaaagc aagtcttata tctatataat
    21421 tttttcaatt catggagctc atagcgggaa ttgaacccgc gacctctccc ttaccaaggg
    21481 agtgctctac ctctgagcca tacgagcgct cagaaaaatt atacacaata acagacaaca
    21541 aaaactctta aatgggatat atactgtaag ttaaaggttt taaaatacag ctcccagttc
    21601 ttttaaatta ttggagcggg aaacgggact cgaacccgcg accctcagct tggaaggctg
    21661 atgctctagc caactgagct actcccgcaa agcatggtgg tgagtcgtgg attcgaacca
    21721 cggaaggcga aagccagcag atttacagtc tgccctcgtt ggccacttga gtaactcacc
    21781 ataaaaatat tgctttttca atattctggt caaacactgc taaaataaat ggagctggtt
    21841 aagggacttg aacccccgac ctgctgctta caaggcagct gctctaccaa ctgagctaaa
    21901 ccagcaaaaa taaaagtaag attataactc aaaaaaaaaa ttttgtcaag acttttttag
    21961 tttttctata aaattttagt cttgtaaatt ttattatcat aaaccaatat tatttttatc
    22021 tatttatgat aatcaaataa atttaaaaat ttctttgctc tttcgctttt tggattttta
    22081 aaaaaacttt taggatcatt ttcttcgatg atttttcctt tatccataaa aataatttta
    22141 tctgctacag ctttagcaaa acccatttca tgagtaacaa taagcatagt cacaccctct
    22201 tttgcaagat ttaacatcac ttctaaaact tctctgacaa tctcaggatc cagcgctgct
    22261 gtaacctcat caaaaagcat taactcagga ttcatgcata aacttcttac tatggcaatt
    22321 ctttgctttt gtcctccgct aagttctctt ggataagcat gaattttatg caaaagcccc
    22381 accttttcaa gccaaatttt agcctctttt aaaacctcat ctttctttct tttttgcact
    22441 ttcataggcc ctagaagtat attttcttca acacttaaat gctcaaaaag ctcataagat
    22501 tgaaaaacca taccaacttt ttgacgcatt cttggccatt ctttaaaatc tttatctatt
    22561 ttctcattat caatataaat attaccactt gcaatctctt caagcccatt aatacaacgc
    22621 aaaagcgtag attttccaca tccgctagga cctaaaatca ccacaacttc tttagcctta
    22681 acttctaaat taatatcttt taaggcgtga tgcgaaccat aatacttttg taaattttct
    22741 atttttagta tactcatttt agctccattt tttctctaat tttcttgaat ataaagtgat
    22801 aggataacaa agtataaaaa agataaaaaa aatcaaacca taaataataa aaggtgcaaa
    22861 atcatttcta ttatgaaatt ctataatttg ttgccctatt tttacaagct ctaccgcgcc
    22921 gattaaataa gcaaaggttg tacttttaat catacgagta agtaaattca tgctcatagg
    22981 agttaaacga cgcatagctt gtggaataat aacataagca aaactttgca ccgtatttaa
    23041 acctaaagat gatgcacttt catactgatg ttttggaata ctctgcaagg aaacacgcac
    23101 caaatccatc atctcaaaac aaccccaaat gctaaaaaca ataatagctg cacttacaga
    23161 actcaaatcc cacccaaacc atctaggaaa accaaaatac accacaaaaa gccatactaa
    23221 aagtggcata acacgcacaa attctaaacc caaacgacaa aaagcataga tataggtatt
    23281 tttaaaactc attaaaatcc ctaaaaataa cccacctatc gaagtaataa taatgctgat
    23341 aaatgaaatt tcaagagtga caaaaagccc ttgccagagt cttaaaagcg tatcggtatt
    23401 taaaagttca agcatgaagc aacctttttt caaactttag caaaataaaa gacaaaggca
    23461 aaataatgca taaatatccc ataaacaaca aaaacaatag ctcatctgtc ttataggtta
    23521 aggaatttaa actcttcatt aaattcacca aatctggcaa ggcaataata ctaacgactg
    23581 aagtttcttt gattaaaaat ataatattag cactaatact tggcatagaa atagccaaag
    23641 cttgcggcaa aatcacataa cgcaaatttc caaattttga aaaacccaaa gaaagtcccg
    23701 cttcaaactg ctgttttctt atggcttcaa atcccgctct taaactttca gccatataag
    23761 aacctcctaa aaaactaagt cctactataa cacaagcaaa agaaggcctt aaagtttctt
    23821 ctacgcttaa gcaaatcaaa tcaagcggtg gaatttgctc taaatgtata ttaaatttag
    23881 gtaaagcata atataagaaa aaaagttgaa ttaataaagg cgtatttctt gaaaactcta
    23941 tataaagctt gcaaatattt tctaaaattt ttattttaaa ataactcatt aaaatacaaa
    24001 acaaacctat tatcaaagaa aaaataattc caaaaaagct tagttttatc gtaagccaag
    24061 cagccgttaa aaaagcagga gcttgagcta atataaaatc aaaatccatt ctctacctta
    24121 aattttacca aagttctttc atgatcatat ctttatttaa aatttcaatt ctaccttttt
    24181 ttgtatcaat aagttctgaa attttaagtt cttttaacac tcgagataaa gattgtgctc
    24241 taacatttaa atcaattgca atttgttttt gtgaaattgt atctaaattt ttttcatttt
    24301 ccaaaagata ctttaataat ctcgtcctta aatctaatgc attttgagat aatttctttt
    24361 ctaaaatttt aattttatca aaaagtgaac tgataagtaa aaaattgaat tctttatttt
    24421 cactgcataa attttgaaaa ttaataaaat caatttccaa aatttctcca tcctcttcaa
    24481 aaacagcatt agcaggataa tttaattttt taaaagcagg catttctgct ataaaatttg
    24541 gaggattaaa ataatgcaaa gtaatttctt tatcacttgc tgtactttta taaatgcgta
    24601 tttttccctt gagtaaaata aaaaattttt tagcctcttc gccttcataa aataaaatac
    24661 tatttttttg aaattttttt aattttccta cactagataa aagttctaaa taatctttca
    24721 ttatataata tttccattct taacttatgt taaatttaat ttatcttatt tttgctatat
    24781 taacgccata aaattaacat ttaagaaagg cttatatgaa atttgaaaca attaatcaag
    24841 aaagcatagc aaaactcatg gaaatatttt atgaaaaagt tagaaaagat aaggatttag
    24901 gtcctatttt taacaatgct attggaacaa gcgatgaaga atggaaagaa cataaagcaa
    24961 aaataggaaa tttttgggca ggcatgcttt taggcgaagg tgattataat gggcaaccct
    25021 taaaaaagca cttagatcta cctccttttc ctcaagagtt ttttgaaatt tggctaaaac
    25081 tttttgaaga aagtttaaat atagtttata atgaagaaat gaaaaatgtc attttacagc
    25141 gtgcacaaat gatagcttca cattttcaaa atatgcttta caagtacggc ggacattaat
    25201 ttggcaattt ttttgccaaa tctttttttg ccttttctaa aatctcctca tccttggaaa
    25261 aatcaaaaaa tttaaactca tttccatgtt gcataaaacc atcgagcaaa tctccactca
    25321 aacgattttt aagatcaagc tctgctattt taaacccatc taaagtgcta gcaaattctt
    25381 ttaaacgact cggaatttct ttaagcttag tataaagata gcaagtactt ttaagcccta
    25441 cacgacctac acggccacga agttgatgta aagtagcaag tcctaaacgt tccgctccta
    25501 caatcactat catactcaat cttggcaaag aaatgcccac ttccaccact gtagtgctta
    25561 gtaaaatatt tccctcatct ctaaaacgct ctaaaatttc atctttttgt ttatctttcc
    25621 catgagttac aaaaactttt tcatagtgac tctgccaata ttctttagcc tgctctaaag
    25681 aaagataagg aatattatca ctagcactca ctaagggata aataatgata atttgatgat
    25741 ttttagcgat ttcttctttg atcttctcgc taagcttaga aaagccttca ttttgtatac
    25801 aataagttgt gatatctttt ttaaaaggca tttgtttaat gaaactaaaa tttaaaagtt
    25861 cagattgtat catgcttaaa gttcttggaa taggcgtagc cgaaaactgt ataaaatgag
    25921 gggcaaattc ttgtttactt aaagaatgaa ttttctcacg ctgagccgag ccaaaacgat
    25981 gttgttcatc tatcattaca agtacggcat tatggctttc taaatgaatt aaagcatgag
    26041 tacctataat aagatttgct ttttgaatat tttgttctaa atctttttct tttttacctc
    26101 ctttaataaa caaaatattc ataaaatcag gcaaaaattt cttagcctct tcataaagct
    26161 gatgcgctaa aatactagta ggtgccatca aaatagcttg tttaggataa accatcaaag
    26221 ccgcaccaag caaaaccaag gttttaccac accctacatc acccataatc acacgccttc
    26281 tagcttcttt tgaatgcaaa tctttttcta tatcttttaa ggcattaagc tgatctttag
    26341 taagagaaaa aggcaaatct ttaagccaat tggctatgtt aaaaacattg atttgatgag
    26401 ctttaaaatg cgttttttta gcttttaaac gctttaaaaa attatatatt tctatatatt
    26461 ttaaatcttt gctaaaattt tgcaaatttt caaacataaa aaaacttttt tcatcataag
    26521 catgcaaatt taaaagaaaa tgtatatatt tatcccctat gccactttct tgtaaatttt
    26581 cataattaag atatttatgt ataaaagcag caatttttgc atcttttaaa cctaaaattt
    26641 gatactttgg actaaaaccc tcaaaagaag ttaaaatttt aggattgtta aattgccaag
    26701 tgtgattaaa acgcgagagt ttagcattaa aaataagccc ttttcctacc ttacaaatcc
    26761 caaaatgcca agctctagga tgaaaaaaca caaaagaaat attttcttgc cattcttcac
    26821 aaaaacctaa accaaaaagt tgattttttc ttgaactaac gctttttata gtgatttttt
    26881 gggtgcaaat ttcattttct ttaggatttt tacttggatt taaattttca atttttttag
    26941 gtaaaagaag cgctaaatca atagcacttt taatttttaa ttttttaaaa aattcaaaat
    27001 cactttcttt aattttcatt ttgtatgctt gcaaaactta tatttaaaag ctcttgatgt
    27061 ttgttaatat aagcattgat ggtttcaagt ttaacctttt ccataagttt taactcttct
    27121 ttataatatc ccaaatttaa accttgataa aattcattaa aggccataga taaacgcttg
    27181 cttaagcctt cataacgcaa aggagttgat cctatgagaa aatttttagc ttgatcaagt
    27241 tcattttgag tcatgccatt ttttataaaa tcttcaaaaa gctcttttac gattttttta
    27301 gcttctttag cgctttcatt tttagtttgt aaatatccaa aaactctaga aaaagacata
    27361 ttcatatcaa gcatagcata agctgagtat gcaagacctc ttttaacacg aatttcttcc
    27421 ataatccttg aaccaaatcc tccttgccct agaacaaata atgcaatttt tgcaagatat
    27481 aaatccttat ctttaaaatc agcaaaaaaa ggtgtagcaa aataaatata agcttgttcg
    27541 ctttctgggc gtatcaaaat ttcatcttta atgtttttgc ttaattcata tttttttgga
    27601 gtattttttt tgcctatttg aagttttgat aatagtttta aaagatcttc cttggcttgt
    27661 ttttcttcta aatctcctcc taaaatcaca accaaatcac taagatggat aaaattttta
    27721 taaaaatttt gtaaatcttt taaagataag atttctatac ttttttcatc tccatcgttt
    27781 gagctttgaa attctttgca tttaaaaatt tgagcattaa gtaaattttt tgctaaataa
    27841 tcaaaatcac tatttttact cgcgagctca cctaaggcat tgatttttaa tttttgcaaa
    27901 attttttctt ctattcttgg ttttaaaagc aatttttcca agctctttaa agcaaaatca
    27961 aaattttctt ttaaacaaga aagattgatt tccaaacttt caaaaccact acttgcctct
    28021 aaatttatcg ctctaaattc taaatcttta aaaaatttat catccacacc ttcatttaaa
    28081 atacgtgaaa acatcttagc taagcctgct atttcatcat aacttctagc gcaatttcta
    28141 aaaacaagct ttaaaacaac aataggaaaa tcagaatttt tttcaaaaat aaaagggatt
    28201 ttaatacccc tactctctaa atactgcatt aaaacctttc taaaatttca taagcggtat
    28261 tgcgtttagc tggattttcg cctaaacttc taatcagcct tatcatctca tcttgattca
    28321 ttctataact tgctcctgcg gcacttacta cattttcttc catcatggtt gagcctaaat
    28381 cattggcccc aaattttaaa gcaagttgac ctataagcga gccttgagtt acccaagaac
    28441 tttgcaaatt tttaaaatta tctaaataaa gtcttgctaa agctaaaagt cttaaatact
    28501 tgttagaact ttgtttcata atctctggat gtttttggat taaagcagta ttatcacttt
    28561 gaaagctcca taaaataaaa gctctaaatc cccctgtttc atcttgcaat tttctcaaat
    28621 gctcaaaatg atcgatgatt tcttcatcat tttcaaccgt tccaaacatc atagtagctg
    28681 tacttttcat accgatttta tgagcttggc gatgtacttc taaccaagta gctgtatcac
    28741 atttatttgg tgcgataata tcacgcaccc tatcgcttag cacctcagca cctgctcctg
    28801 gtatagaaaa taaaccttta gcttgtagtc tttgaagtac ttcagtaatt gaaattttag
    28861 atgcctttgc gatataagcg atctcaaccg ctgaaaaacc atgtacagtg atatttggat
    28921 aatgttcttt tatccaagaa actaattctt cataccattc tatttttaac tttgggtgca
    28981 ccccgccttg aaaaagaatt tgcgtacccc caatagcttc aagctcctct atcttcttgc
    29041 ctatctcctc aaagcttaaa atataagcat catcttcttt atgatggcga taaaaagcac
    29101 aaaaagaaca atcaatacaa caaacattgg tataattaat atttctatct acaacaaaag
    29161 tagtgatttt ttcaggatga agttctaatt ttcttttata agccatttct ccaagttcag
    29221 ttaaacttgc atggtgtaat aaatctaaag cttctttttt atccagtctt ttcaaaattt
    29281 ttccttgttt ttttacataa ttaaaataat tatagcattt aaaatataaa ttatgctata
    29341 gtttcgctta tgaattacat tgaactatta aaaaataata aaaatatcag aatattggct
    29401 tcggttcagt ttatagtata ttttggagca tggttttctc aaacgggagt ttttaccctt
    29461 ttagtcgagc ttaatgctcc tacttgggca acagctacaa gtgctatgct tgctttttta
    29521 cctggagttt tacttgctcc tattaatggc gtcatagtag agaaaaataa acctaaaaaa
    29581 cttttactca gcatgattag catagaatta atttctattt tttgtcttat ttttgtcaca
    29641 agtcttagta tgctttggct tttatttatt ttaattttca taagactttg tgttgcttcg
    29701 atttattttc aagctgaaat gagtttattg gccaaaattt taactcctca agaacttaaa
    29761 ctcgctaatg aaatgcacag tgtcatttgg gcgatttctt atacagcagg tatggcaagt
    29821 gcgggaattt ttatttattt tctaggagtt aaaaccgctt ttctatttga ctgtatactt
    29881 atactcatag gcatttcttt tttagtaaga ttaagcattc ctgattttca tcacaaaaca
    29941 caaagtcgct tttttaccat gataaaagaa ggatttttct atgttttaaa caataagata
    30001 atttttcatc ttatcttgct tcacgctttt ataggtttaa ctgcttatga aaccttggtt
    30061 acgcttttag cgcaacatca atataaagaa gttttatctg ctgctttagt aatagggttt
    30121 ttaaatgcag tacgtgcttg ttctttagct ataggaccta tggttttaag caaatttatt
    30181 aatgataaaa atttatttta catgtatctt ggtcaaggct tgggtattat actttgggct
    30241 ttaactcaat ttaattttta tatttctttt ttaggtttaa tcggtgcagg tttttttacc
    30301 tcagcgcttt gggcttacac ctacactatg atacaaaaaa atgccgacaa agaatatcat
    30361 ggtagagtga tcgcttatac agatatgatt tatcttagtt ttagcgctat tatttcaatg
    30421 cttatgggct ttttatttga aataggcttg agtttagaac taattacagg cttattgggt
    30481 atgattttta tctttgtggc attttattgg aagtggtttt ataaaaaata tttgtgaaaa
    30541 ttcacaaata ttttaaattt taaacaaatc ttgaagattt ttcattgctt cttcattgct
    30601 gatggcatta tttagctgtg atgagcttaa ttcattgagc tctatttcat aaccacttaa
    30661 catagaagca aggcgaatat taataccatt ttttcctatg gctttgcttt tttgttcgct
    30721 atttaaactt acaatagctt ttttatcttc aatttttaca gaatttacaa tagcgggagc
    30781 caaggcacga gaaattaaaa tttcactctc atttgtaaat tctatacaat caatattttc
    30841 attatgaagc tctttgctta ctgcattaat tcttacacct ttaacaccta ctgtagcacc
    30901 tacaggatcg atatttgctc cattggcctg aagaatgatt tttgctcttt cacctggaat
    30961 tctagcacat cctataatat tgacataacc atctttgatt tctggaacct cagcttcaag
    31021 taaacattct aaaaatttag gacttgtacg actaagctcg attttaatac ctttatctgt
    31081 ataaacacgg cgtatcacag cttttaccac atcacctatt ttaaattttt cccctttaat
    31141 gcgatttttt ctcggtaaaa aagctcttaa ttcatctatt tcaataaaag tattttcttc
    31201 attatccact ctaacaactg taccaaaaac catttgccct actttgtttt tatatttttc
    31261 aaaaatagtt tgttctaata atttttgtat atgatattca agttctttat gcaaggtatt
    31321 taccgcagtt cttcctaaat tttccaaaga acattcatag gttaattcat ctcctatttc
    31381 aacatctgga gcttctgatt ttgccttact taacgcgata aaactctcac ttttattttg
    31441 caatctctcg tcattatctg ctactatggt aattttttga taaagattta aatttttagg
    31501 atccacaaaa aactcatatt cttgtccata aattcttttt gcagtattga ttaaagcggt
    31561 agctaccttt tctcttacat tctctaagtt taaatttttt tcattagcaa tagattcgat
    31621 aatatctgct atcttttcca tattttataa aacctttttt gtgggaaatt taaaaatgta
    31681 gataaaaatt atatccttaa taagtttaat taaaagtaaa atttgctaaa attatagatt
    31741 aaaatgaaaa ttcttaagga tttagctatg gaattaaaat tggcaagaac tttgattaat
    31801 gaaaaaccta aaaatattag cctagaaaaa atcgaagagg ctatagaaaa agaaggacaa
    31861 aagttttttt attttgataa agataataca cacaaacaac tcattgccct tgtaaatcat
    31921 tttgaaaaaa aaggagtaag catttatcat agaaccgtaa aatacggact tgatgataat
    31981 gattttatgt atgaggtaca tattctttga gtgctaaaaa actttttatc caaactttag
    32041 gttgtgcgat gaatgtcaga gattctgagc atatgatcgc agaattaaca caaaaagaaa
    32101 attacgcact aacagaagat atcaaagaag cagatcttat tcttatcaat acctgttcag
    32161 tgcgtgaaaa acctgtgcat aaacttttct cagaagtagg tggttttgaa aaagttaaaa
    32221 aagaaggtgc taaaatagga gtttgtggat gtactgcatc gcatttggga aatgaaattt
    32281 tcaaacgtgc tccttatgtg gattttgttc taggagcaag aaatatttcc aaaatcactc
    32341 aagctataaa aactccaaaa tttatgggcg tggacataga ctatgatgaa agtgaatttg
    32401 cttttgcaga ttttagaaat agtatttata aatcctatat taatatctcc ataggttgtg
    32461 acaaacactg cacttattgt atagtgccac atactagagg agatgaaatt tccatacctt
    32521 ttaacatcat ctacaaagaa gctcaaaaag ctattgaaaa aggcgctaaa gagattttct
    32581 tgctaggaca aaatgtcaat aactatggca aaagatttag aaacgaacat aaaaaaatgg
    32641 acttttcaga tcttttagaa gaacttagca ctatagaagg tttggaacgc attcgcttta
    32701 caagtccaca tcctttgcac atggatgata aatttttaga agtttttgcc aataatccaa
    32761 aagtttgcaa atccatgcac atgcctttac aaagcggctc aagtgaaatt ttaaaagcta
    32821 tgaagcgtgg ctatgctaaa gaatggtatt taaatagagc tttaaaactt agagaacttt
    32881 gtccaaatgt tagcatttct acagacatta ttgtagcttt tccaggggaa agtgaaaaag
    32941 attttgaaga aactatggat gttttggaaa aagtgcgttt tgaacaaatt ttttctttta
    33001 aatactccaa acgcccttta acaaaagccg caaccatgcc taatcaaatc gatgaagaaa
    33061 cagcttcaag aagacttagc accttacaaa atcgtcatag tgaaatttta gatgaaattg
    33121 taaaaaaaca agaaaataaa acttttaaag ttttatttga agaattaaga gcagacaata
    33181 gcattgctgg aagaacagat aataattttt tagttcaagt tgaaggtagc gaagaacttt
    33241 tagggcaatt taaagaagta aaaataacta atgcaaagcg tatggtttta tatggggaaa
    33301 tcgtttaaaa tccattgctt aacatatata attttcatct tgcaatggct tattttttta
    33361 agctgtaaaa agcactataa aggtgaaaaa gttgaccgta aagctggtgt gatacttttt
    33421 tggcatggaa aattagcact catgcctttt gcgtttagac attatagaca aaaaaataaa
    33481 aaagcctatg tcatgatctc ccaccataaa gatggagaac aaattgcaaa aatcatcaag
    33541 cttttcggtc ttgatactgt aagaggaagc acttcaaggg gtgctagcag tgcacttaga
    33601 gctgcattta aagttttaga acaaaatgac gatatagtta tcacgcccga tggtccacga
    33661 gggccttatc atagtatttc agatggttct atcattttgg ctcaaaaaaa agaactaaag
    33721 ataagaattt taaactatga agcaaatcgt ttttggaaat ttaaaagttg ggataagatg
    33781 atcttgccaa aaccttttag taagattact tatagtctaa gtgaaccttt ggatatttta
    33841 tctttagata aagaaaaagc taaagaattt ctaatggaac aatttgataa aattagctta
    33901 gctgatcaat ttaaggaatg aaatgttatt tttacttaaa aaaatatttc cacaactttt
    33961 tattagtatt attttagaag ataaaaaaaa tattgtaaaa gcttctattt atagaggaaa
    34021 taaactaatc agtagcaatg aaaaaacttt tgataaaagc gaaaatttat tagaatacgt
    34081 aaaaaattta agcaagcatt tcttatttta ccacactgct ttatttttag atgccaaaga
    34141 acaaggatta atacctagta caaatattca agattgtgag cactttaata taggaaaaat
    34201 cagcttacag catattttgt ttaataatgc ccttgtttat acggctaccg aacatgtaga
    34261 atattatagc gagctttttg aagaatatag aggtttagat tttttatatt ccccttttgc
    34321 tcttctttac tacaatatgc aaaaagaaaa acagcctgat gatcaaattt tactttatgg
    34381 atttaagcaa ggacatcttt tggcaattat tgttgctaaa ggcaatacta tcttatacgg
    34441 tgattttaaa atatttgagc aagaattagg tttagagctt gaacttccat cagaagataa
    34501 taaagaaatt gaaaacaaca acgatgatac cgaagttacc ttagataact tcaatgaagc
    34561 cttaaataat aaatttgatc tacttgatca agaaaataat cttgaaactt tggataataa
    34621 tgataatttt aatcttgatg aattaaatca atttagcaat gatatggaac tttgccgtta
    34681 tattattacg agcattgaaa aattttataa tgatgataaa tatgctgggg tatttatcaa
    34741 tggtatttta ttatatagcg aatcagatat taacataagt gctattgatt ttttagaaag
    34801 tgaaactttt ttagagataa aaacgaaaca aatcaacacc ttagatctta tgatagaatt
    34861 gatgcaaaag gagcttaaat gacttatagc ttcatacagc caagaaaaaa acctattttc
    34921 acactctttg ataaaatttg gctaggactt tttggtttta gtatattatt tatcttgcta
    34981 gtatatttta catatacaat aaaaattgca ttaatcaata gctctatcga tgatgaaaaa
    35041 caacaagtta tagtgcttca aaatcaaact aagcaaaatg aaatgcttta tgaaatttta
    35101 tttgatcaaa gccaaatagc gaaaaatttt aacactcaaa atcaaattgt taaagaaagc
    35161 ttaagaaatc tatttgatat tattgtaaaa actgataata ttactcttga aagtgttgaa
    35221 caagacgaat attccttaaa acttatcgga gtcactccta caagagaaat gtttactcta
    35281 cttttagaaa cccctttaaa aagcatcttt gatcaaagct atacaaccta ttatcgctta
    35341 gataatgggt ggtatcgttt tgttagtatt agtaaacaaa ttccaggagt tgcagatgaa
    35401 agataaaagt ctagaagaaa ttgatttatt aaagcttatc atttgcgcgt taagttttat
    35461 aagcgtttgc acagccttga tcttattttt acttttaccg acattaaaaa attacaaaca
    35521 agcaaatctt agagaaaatt cacaacttgc tatcttaaaa gccgctaaat caaaatttga
    35581 ctttagtgaa gataaaatat caactctaag aagcgaaaac aacaaaagtt tagagcaatt
    35641 tgagcaaaat tttaatatag gaaattttga tattttttta caaaaatatt ttcaaaatgt
    35701 aaaaattcaa gaaactaagc ccgaaaaaca agaaaaatat ctaaaaaacc gcttagccat
    35761 taaagcgaca atgaacaatc ctagaagact ttatgatttt attgatgctc taaaaaacta
    35821 taataactta atcaagcttg attatccact taatcttaaa gcaggagagc aaggtatctc
    35881 tatagatctt actctcaaag tttattcaag ctaaactcac atcttcgcct tttaaaattt
    35941 gattcatagt attcattgca cacatttttc cacacatgga acatgagttt aaatcatcag
    36001 ggcgacgctc attaaacatt tttttagcct tttctccatc aatagcaagt ttaaacattt
    36061 tctcccaatc tatctcttgt ctagccttac tcatctcatc atctcttgct ctttcttttg
    36121 gaagtttagc tatatctccc gcatgagctg caattttagt cgcaactata ccctctctaa
    36181 catcttctaa atttggaagt cttaagtgtt cagcaggtgt tacataacac agcatatcag
    36241 caccgctagc tgcagccaca gctcctccaa tagcaccact aatatgatca taccctgcgc
    36301 caatatctgt taccaaaggt cctaagacat aaaaaggcgc tcctttgcat aaacgctttt
    36361 ctaattgcat atttgcctct atttcattaa tagccatatg ccctggacct tctatcatta
    36421 cttgaacccc aacatcccaa gctctttgag taaggagtga caattctata agctctgaaa
    36481 tttgcgcccc atcacttgca tcgtgagtag agccaggacg caaagcatcg cccaaagata
    36541 aagttacatc gtattttaaa caaatatcaa gcaaatcatc ataatactca aaaaaaggat
    36601 tttcagcatc tttcatcatc atccaagcat aaagcacaga gcctcctctt gaaactatat
    36661 ttgtaagtct tttactttgt ttaaaaatat gcgctgcgcg agaattaata cctgcatgaa
    36721 ttgtcataaa atcaacccca cttttagcat gatgatatac aacatctaaa aagtctttag
    36781 caccaatttg ttttaaatct ttttctaaaa atcctaccgc atcatataca ggaactgttc
    36841 ctatcatagc ttttgaaaca ttaacaagct cgtctctaaa acgacttgtt ttgccataat
    36901 tgcttaagtc cataatcgct tctatgtcaa atttatgagc aagctctact tttttcattt
    36961 cctcgctata atcaacgcaa tcatttgaaa ctcctaaatt tacattaacc ttagtacgca
    37021 gtccaaaacc tataccattt ggatcaagac ttttatgatt aatatttgca gggataataa
    37081 ttttaccgca agcaatattt tcaagcaaaa aatctttact taaattttct ttttgtgcaa
    37141 caatctgcat ttctttagta aaaatacctt ctttcgcata attcatttga gttttcataa
    37201 atttatcctt taaaaaattt ggataaatga agggtgagta taaattttta aagtattgaa
    37261 atttataaat cttcccgacg ctggcattat ccagatccgg ttcggtctaa gcttttagct
    37321 tactctcagc ctgttacaca agctcccgtc atttatgtct taattataca ctttaaatat
    37381 ttatttttgc tttatgcgtg gcagtctttg taaaatttat aagttcttct gtagttttta
    37441 tatgataggg aagttttcca aggcaatatt taaaaatttc agcagctgcc aaagcatcat
    37501 ctaaagccct atgatgcgta ttttccacgc ccagaaattc tttcaaaacc tctagtttat
    37561 attttggact ttctatacaa cattgtgcaa attctatagt acaaatacga cgattaagta
    37621 aaatgccaaa accacactca tttaaagcct tagaaataaa actataatca aaacgcacat
    37681 tatgtgctac aaaaatactg tcttttaaaa aaagcctaaa atcacttaaa acctttgtta
    37741 aacttggagc attttccacc atctcataag taatacccgt aagttcggtt atattttctg
    37801 gaatttcttt tactttaaca aaactttgaa agcgtccaat ttctttagaa ttttgaattt
    37861 ttactgctcc aatttctaaa atttccccct tacttacacc gccagtactt tctatatcta
    37921 ctatacaaaa aatttcatct ttaatttttg ttgtgcgtgt tttaaggata aaaatattat
    37981 ctttattcaa agttaagccc aaacccaaaa gctcaaaagt ttccaaatct aaatcaaaat
    38041 tttttaattc ttcaactttg gcaaactctt gcatcaccca atcataaggc ttgctttgct
    38101 tgtttaatat agaaataatc tgatcaattt gctgtaaact caaaattcaa gctttaaaga
    38161 tgaaattgca gttttataat cattagaaga aaaaatataa cttccagcca ccaaaatatc
    38221 agctccggat tcctctaaat cgctagcatt taaaccatta acaccaccat caacctctat
    38281 aaaaacttta gcattttttt tatcaatcat ttggcgtaat tctttgattt tttcatgtac
    38341 caaaggtaaa aatttttgtc caccaaatcc aggattaaca ctcattaaaa gcaccatatc
    38401 tacaaattct agcatgtgtt taatagaatc aataggagtg tgtggattta aaacaatagc
    38461 aggatggatt ccttgacttc ttatatattc acaaagcctt ataggatgaa cttcgctttc
    38521 catatgaaaa gaaataaatt ttggtttcaa agggataaaa agatctataa atttacttac
    38581 atctttaacc atcaaatgca catctaatgg caacttacta atagttgaaa ttttttcgat
    38641 cacgcaaggt ccgaaagtca aatttggaac aaagtgtcca tccattacat caatatgtaa
    38701 aagatctgca cctgcagctt caatagcttt aacttcttct tctaatttca aaaaatttgc
    38761 agacaataaa cttggagcta catacatgat caaaacctta aactatatat aaatgtgata
    38821 aataatattt tatcgactta tatattaaaa aaactataaa ttatggaata ttttaagctt
    38881 aattttgata gaatcttcat ttaaaaattt tcataaggac aagaaaatgg caagagtatg
    38941 tcaaatcaca ggcaagggtc caatggtggg taataatgtc agccatgcta acaataaaac
    39001 aaaaagacgc tttttaccta atctcagaac agttcgtgta actttagaag atggcaccac
    39061 gagaaaaatg agaatcgcag cttctactct gagaactcta aaaaaacaaa attctaaata
    39121 attttgagga tttattcctc aattttaaaa tttccaattt aaaaataaac ttt
//
LOCUS       DBBXPZ010000003        38260 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.003, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000003 DBBXPZ010000000
VERSION     DBBXPZ010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 38260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 38260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..38260
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.003"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            13..612
                     /locus_tag="ACJFD7_000097"
     CDS             13..612
                     /locus_tag="ACJFD7_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HGG0858953.1"
                     /translation="MLPKWDNSYSVHNAKIDEQHKKLFKLAAKVEVVSDRSVSKNEVK
                     ELLAEFFNYMKDHFNDEEKYMQLIGYPNLEEHRKIHKEIIQTMINLIKDIKSTNDLKE
                     KLYIVAKKWLLEHILYEDMKVEKWRSSSLSTDDGGDVSFEAAEDEDNEHPQFYLYTCN
                     CPGKIHDVPYSIHQKIELQGHKFTCKTCKQAIKFYKKYS"
     gene            623..871
                     /locus_tag="ACJFD7_000098"
     CDS             623..871
                     /locus_tag="ACJFD7_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HGG0858954.1"
                     /translation="MKRNVKTYSFRMPLELKERLDNLSKNLSKPKSTIVKEAIEAYLN
                     EVEDFSFAVNALEELKDGDYQKASKKIDKIVKNLKQTK"
     gene            complement(962..1036)
                     /locus_tag="ACJFD7_000099"
     tRNA            complement(962..1036)
                     /locus_tag="ACJFD7_000099"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1002..1004),aa:Asn,seq:gtt)
     gene            complement(1129..2376)
                     /locus_tag="ACJFD7_000100"
     CDS             complement(1129..2376)
                     /locus_tag="ACJFD7_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArsS family sensor histidine kinase"
                     /protein_id="HGG0858955.1"
                     /translation="MNKSSIFYTITFIFIFAGVSVVLGFLWLIEYDQQNYTRELNTKY
                     SLIANARLLNFAGVISEKEFEEQTKNYNKMDEITEAKQIRKILFRGDVLARVEVNNGL
                     IEIISYNRQVYLNIIYDGKVYLYKDQDYQTYRYFIIKAIAVAVICILVLLYIYIFKKL
                     KPLKRLKKQIDKFAQGKLGDIEDVSTGVDEISQVSEAFYQAIVQIRKLNQSRQFFLRN
                     IMHELKTPITKGLLTLEMIEDNKYKERLNGVFTRLEILINEFAAIEQITSGAAFINRK
                     KYNILDVLDEAKEIAMRDDSNIRIFMEESFFVNVDFKLFTTAIKNMIDNGIKHSEDGF
                     VQIDIIDDYICFKNRGPELNNTLEYYTQAFTQGSKQKSSFGLGLYIVNTILETHGMKL
                     DYLYEDGVNLFYFRNLKSVIVKE"
     gene            complement(2373..3047)
                     /locus_tag="ACJFD7_000101"
     CDS             complement(2373..3047)
                     /locus_tag="ACJFD7_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HGG0858956.1"
                     /translation="MTNILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALK
                     EYQLIILDLSLPGLDGLEVCEEIRKKYDTPIIVSSARHDITDKVNALELGADDYLPKP
                     YNPKELQARIKSHLRRISNTKSAIAKSVKDLVYDQYKHIITMKGQELTLTNAEFDILS
                     YLIKKEGGVVSREELVYNCSSISEDSSNKSIDVIISRIRQKMGDDPKTPKYIHSIRGI
                     GYKLTQ"
     gene            complement(3123..4541)
                     /gene="htrA"
                     /locus_tag="ACJFD7_000102"
     CDS             complement(3123..4541)
                     /gene="htrA"
                     /locus_tag="ACJFD7_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease HtrA"
                     /protein_id="HGG0858957.1"
                     /translation="MKKIFLSLSLASALFAASINFNESTATANRVNPAAGNAVLSYHD
                     SIKDAKKSVVNISTSKTITRANRPSPLDDFFNDPYFKQFFDFDFSQRKGKNDKEVVSS
                     LGSGVIISKDGYIVTNNHVVDDADTITVNLPGSDIEYKAKLIGKDPKTDLAVIKIEAN
                     NLSAITFTNSDDLMEGDVVFALGNPFGVGFSVTSGIISALNKDNIGLNQYENFIQTDA
                     SINPGNSGGALVDSRGYLVGINSAILSRGGGNNGIGFAIPSNMVKDIAKKLIEKGKID
                     RGFLGVTILALQGDTKKAYKNQEGALITDVQKGSSADEAGLKRGDLVTKVNDKVIKSP
                     IDLKNYIGTLEIGQKISLSYERDGENKQASFILKGEKENPKGVQSDLIDGLSLRNLDP
                     RLKDRLQIPKDVNGVLVDSVKEKSKGKNSGFQEGDIIIGVGQSEIKNLKDLEQALKQV
                     NKKEFTKVWVYRNGFATLLLLK"
     gene            4741..5634
                     /locus_tag="ACJFD7_000103"
     CDS             4741..5634
                     /locus_tag="ACJFD7_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family protein"
                     /protein_id="HGG0858958.1"
                     /translation="MNSLYETLGVSKNASADEIKKAYRRLARKYHPDINKEKGAEEKF
                     KEINAAYEILSDEKKRAQYDQYGDSMFGGQSFHDFSRNTGGVNLDDILKDLFGGGFGG
                     RSRGGFNGFSSKGFSSGFGGFGGFEEEILDSNLELHIPFEKAVKGGEHSFNFQGETIK
                     FKIPHGIKEGEKLRIRSKGKQSRNGARGDLIIIVKIEESPIYTREDDDLYQKVDISLK
                     TALFGGKINIKTLKEGKEEATINITPNSKNNQKIRLKGYGVQNRKSDIYGDMYLILNV
                     VLPNLDTLDEKFIELLKEKLP"
     gene            5650..6024
                     /gene="hspR"
                     /locus_tag="ACJFD7_000104"
     CDS             5650..6024
                     /gene="hspR"
                     /locus_tag="ACJFD7_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock transcriptional regulator HspR"
                     /protein_id="HGG0858959.1"
                     /translation="MEQHYDEPVYLISVVAKVLSIHPQTLRQYEREGLIEPSRTDGKI
                     RLYSQRDIDRIKLILRLTRDMGINLAGVDVILKLKNQLHEFENLIDELRLELSKQQDK
                     EAASKAVVKHKNSFDLIFYEKK"
     gene            6031..7656
                     /locus_tag="ACJFD7_000105"
     CDS             6031..7656
                     /locus_tag="ACJFD7_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HGG0858960.1"
                     /translation="MDNFLEIFLITVAIAIVLNVIFKKFEIPTIIGYIAAGEIISEIY
                     HLSGKGEITHIAEFGIVFLMFTIGLEFSFKHLMAMKQEVFLNGSLQMLTCGFVFMLLA
                     IGILGLGDKSATIVGFALALSSTAVVLKILNDNGDINEQYGRKALGILLFQDIAVIPL
                     LLLVDIFSSNNQNIEKLLFTTLISALILITLLFFIGKYLVDRIFRLIIHTSSQEIFIS
                     TVLFMVIGASFLANYFGFSYSLGAFIAGALIAETKYKHKIEADLIPFRDLLLGLFFIT
                     VGMQIQLDVVAQNWFLIIVLTLLVMALKFGIVFGFLFLYTKKRVALKTAFAIAQIGEF
                     ALAIFSLLQAKNMLDIKTSQILIVVSILTMIITPFILNNIRKITNVVEDIALNTNAVQ
                     NIDSNIKLKNHLVVFGYGRLGQEVVQKIKNTGVPYLVLESDLNLVELGVSRGENVVFA
                     NAAQEETLKIANIEECAVAIITVTNEAKLEILCQVLANYPKPIDTIIHVNGTLKKMLF
                     SSIDENIRIIRSEKVIARNLVQEALECRIHKNT"
     gene            7666..7998
                     /locus_tag="ACJFD7_000106"
     CDS             7666..7998
                     /locus_tag="ACJFD7_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0858961.1"
                     /translation="MTKNEEKALRVKYLRNLEKFFNGAISALKKEDFDKTKFEERMLK
                     NAKFFEKNPAVNLNSTYAKNLEFFVNACLDFSKEKNELLNLANALDKQKKQGGKKEKH
                     KNYLKDYE"
     gene            7995..8615
                     /locus_tag="ACJFD7_000107"
     CDS             7995..8615
                     /locus_tag="ACJFD7_000107"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HGG0858962.1"
                     /translation="MINVFFDMDGTLIDSANAISCAVNEIRQDLNLAPLSREIIMQTI
                     NTPNIDWAKELYNIENFHHSNFKEGYEKYFVKHYEQSVVLFEGVKELLEFLKSKNCFL
                     AIATNAPQSSLSNILKKHDIIPYFDKILGVSLGIEPKPHPMMLELLKSEAPYKTSVFI
                     GDSQKDKECAKNANLPYFHAKWYQKNLKENEFSNSSELKDFLQKYL"
     gene            8671..10665
                     /gene="glyS"
                     /locus_tag="ACJFD7_000108"
     CDS             8671..10665
                     /gene="glyS"
                     /locus_tag="ACJFD7_000108"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HGG0858963.1"
                     /translation="MSELLIEIGTEELPAIPLLKELANIEKKWNNVLEEYRLVSDFKF
                     YYTPRRLVFFHENFADKQEDSFAEFIGAPKNVAYKDGVLTPAGQSFLQKARISENELS
                     FKEIKGKEVLYHQKAIKGLQSQEILGEMVEKFLKSLSFGKSMRWGANSFEFIRAIRSI
                     TCILNDELVNFQSYGVKSTKKTFIHRSVSYDLQDFNNAKEYFELLEKNYIILDPIKRK
                     EKILEQFKLIESQKNIQIGEDEELLAEVVAITEYPNALLGSFEEEFLEIPSEVIITSM
                     RENQRYFAVFNDKGLSNHFIVVSNAVCKDYSKIIHGNERVLRARLSDAMFFYQNDLQN
                     GLKPEKLAKMTYLEGLGTMQDKSLREIKIAEILCQMLHNDKIENISTALKYAKADLAT
                     QMVYEFTDLQGIMGSYYAQKMGLDYQICLAIKEQYLPNSEQAPLPSTEFSSIVALANK
                     LDTLIGLFSIGKIPSGTKDPYALRRAANGIIKIALNLNKEFDIQILLEKLSNHYKSFD
                     MQILKDFIFERLYTFYTVNASFVKAVLSSQNTDLIHINQSVNALIKLSKKDNFNENFA
                     TFKRLANIATKNPHKVDESLFVQEAESKLYKAFQEKTKANSLQEKLENLFALKPFIDE
                     FFNQVMINAEDEKLKNNRQALVYEIYAEFLKIADLKELSL"
     gene            10662..11483
                     /locus_tag="ACJFD7_000109"
     CDS             10662..11483
                     /locus_tag="ACJFD7_000109"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HGG0858964.1"
                     /translation="MKALWLFLSLTLWLFGAQNLELIKGQALFLELDKKDFLSLKNND
                     KNIPTFAHPKNQEKVLAIFSLPYKNPPQNTKLIAFYKDKKEEIFIKTLEGNYKSEKLQ
                     VENKKIFPPKTVKERIAKELKEANAIYSSYTPKALFNGAFNIPLNSFITSDFGKARTF
                     NEKVASYHSGTDFRAATGTPIYAANSGIVKIAKDRYFAGNSVVIDHGFGIYSQYYHLS
                     KIDVKVGQKIKKGELIGLSGASGRVSGPHLHFGILAGGKQVDPLDFVSKFNAIFQ"
     gene            11480..12430
                     /locus_tag="ACJFD7_000110"
     CDS             11480..12430
                     /locus_tag="ACJFD7_000110"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HGG0858965.1"
                     /translation="MKFSDFFHAWLHESYYKNAVSIGKNGDFFTAVSVGNLFGTLLAK
                     HFLNLIDEKILKPPLELVEIGANEGYLSRDFLAALLELRPEIFSQISFFIIEPHEKLR
                     TLQKKTLEGVEFTHKNSLKECHFKNAFFFCNELFDSFTCELIDHDKMAFVENFKLIFK
                     NMDENLITKCKTLNLKKGELSLELENFFKDLDQACERFIFVGFDYGTLNPQNFSLRIY
                     QKHEVFSPFEVSLKDFFGKSDLTYNVNFAHLQKLIKEYDFKPLAFKKQSLALMDFGFE
                     DLLEYTKNKNIKTYESFLSQAKILFFNFDEKFHFFEFQKN"
     gene            complement(12427..13401)
                     /locus_tag="ACJFD7_000111"
     CDS             complement(12427..13401)
                     /locus_tag="ACJFD7_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HGG0858966.1"
                     /translation="MLGIDLGSNTLRAVQMDEKLNKLKEYEFVIGAAKNLNQSGEISK
                     EAIQRLKNALSILAKEQDLSKARAVATAAFRKASNTNEIFAHLKEEFGIDFKLIDAKS
                     EAKISVLGMQSGLRRLKIWGEFAYCDLGGASCELSFRKSFKSFDFGIISFYEKNCHSY
                     YKSCISYKKLIKKYPKFIINIKDKKLKIHFLIANPYLKHLAFMAFDEVAMIKKELRSL
                     GAKTVVLNSGVPTTLSALKQNISYEKYETTRVNGKKLCHKDFLNYAIKLFHMEEKKAI
                     KEVGMMRKNYLSAGCLLFYALFDKHKLLVIDEGLREGVCLASMKNIKF"
     gene            13457..14230
                     /locus_tag="ACJFD7_000112"
     CDS             13457..14230
                     /locus_tag="ACJFD7_000112"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HGG0858967.1"
                     /translation="MLLGVNIDHIAVLRQARMVNDPDLLEAAFIAARHGDQITLHVRE
                     DRRHAQDFDLENIIKFCKSPVNLECALNDEILNLALKLKPHRVTLVPEKREELTTEGG
                     LCLNHAKLKQSIEKLQNANIEVSLFINPSLEDIEKSKILKAQFIELHTGHYANLHNAL
                     FSNISHTAFALKELGQDKKTLQAQFEKELQNLELCAKKGLELGLKVAAGHGLNYKNVK
                     PVVKIKEICELNIGQSIVARSVFTGLQNAILEMKELIKR"
     gene            14227..15321
                     /gene="pdxA"
                     /locus_tag="ACJFD7_000113"
     CDS             14227..15321
                     /gene="pdxA"
                     /locus_tag="ACJFD7_000113"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase"
                     /protein_id="HGG0858968.1"
                     /translation="MKKLAISIGDINGIGLEILVRSHEELSKICTPFYFIHESLLDKA
                     SKLLNLKLFNAKIVAFKDGKDYEFNFVKKENSLEIYSFYLPLGFKVDENFEIKAGEID
                     TKSGLYSFLSFKAASYFVYEKHAHALLTLPIHKKAWEDAGLKYKGHTDALRDFFKKNA
                     IMMLGCKELFVGLFSEHIPLAKVSKKITFKNLSIFLKDFYKETHFKKMGLLGFNPHAG
                     DYGVIGGEEEKIMEKAIAFVNAFLYSKKDEKFFKKALKDGNLQKELLLNFKGNGVYLP
                     YPLVADTAFTKAGLKNCNRLVAMYHDLALAPLKALYFDKSINVSLNLPIIRVSVDHGT
                     AFDKAYKNAKINTKSYFEAAKFAINLNSKA"
     gene            complement(15311..15913)
                     /locus_tag="ACJFD7_000114"
     CDS             complement(15311..15913)
                     /locus_tag="ACJFD7_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0858969.1"
                     /translation="MKKIILLLGLSLASLGALSFDELIYKDEVKPSFDCSKIKYDGKS
                     DDELMICNKIGVRNEFENKKLALVDNIYSSLYQNISKKADKKMKKDFKAISKKMLKER
                     KICIKNMQNTKAGENPILSLLNASDCMQEAYIKALLELMQRAKKDTKIKEVLEQIFKN
                     KVDKYENLLTQSLNTNKDLQDLIDSLAKEDLIDSRAKFKL"
     gene            16026..17225
                     /locus_tag="ACJFD7_000115"
     CDS             16026..17225
                     /locus_tag="ACJFD7_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0858970.1"
                     /translation="MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAG
                     YLTTLYAIGVVIGAPLITIPLSRFHRHTQLLINLGIFALANFIIFFSQNFYLTAFARF
                     IAGTQHGVFFVIATLAVSTITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFK
                     FIFLLIFIITSLAFFGVWHMMPKNLHPSPTSLKNLIPAFSHQNLLKTYTITICSCGAQ
                     FVLYTYLQKILVEISGFKVQDTAYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILS
                     IQVLVFLSVFLTMYSKILIIFSVALIGFFAFSTIPALKMLSITKAKRHTYKVIDSTVS
                     VNEAAFNVGIALASFLGGIVLAGLGIEFNALFSALFVSPALIFALLFAKDKLNYKKFQ
                     RKSFTKV"
     gene            17281..17601
                     /gene="ciaC"
                     /locus_tag="ACJFD7_000116"
     CDS             17281..17601
                     /gene="ciaC"
                     /locus_tag="ACJFD7_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion antigen CiaC"
                     /protein_id="HGG0858971.1"
                     /translation="MVVDNTQKTSNAIFSITTKVKEKNTSADEFQATLNEVKNKEEKE
                     DKKTNSSKFTNEDIDLGAVREDFRSYAWQKMREDQYKKNEETLLNKLFATIDAGNATN
                     NTKA"
     gene            17785..18807
                     /gene="hemE"
                     /locus_tag="ACJFD7_000117"
     CDS             17785..18807
                     /gene="hemE"
                     /locus_tag="ACJFD7_000117"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HGG0858972.1"
                     /translation="MIFIDACFKKPTPYTPIWMMRQAGRYLPEYMEVRKQAGDFLSLC
                     KDYKKASEVSLQPIDILDVDAAIIFSDILVVPLEMGMNLRFEKGEGPVFDNPISTLED
                     LEKLDDQNAHKKLNYVYDALKLTREKLSQNKALIGFCGSPWTIATYMIEGSGSKNYAK
                     CKKMLYQNPELLHKILNKLTQVLKLYLEEQIKAGANAIQIFDSWASALEYDKFFKFSF
                     NYMLEISNFIKSKYPNIPVILFPKGISGYLDRIDGNFDVFGVDWSTPLDLARDKLSHK
                     YTLQGNMEPCRLYDKNAIKEGVEKILKTMQNKAHIFNLGHGILPDIPVENAKYFIKLV
                     QESSAK"
     gene            18804..19706
                     /locus_tag="ACJFD7_000118"
     CDS             18804..19706
                     /locus_tag="ACJFD7_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HGG0858973.1"
                     /translation="MKILFGPVSSRRFGRSLGIDLSPSKKQCNFDCVYCELDPKKAQE
                     KQDEIISIDKIISEVKAMLEKNIEFDFLTLTANGEPSLYPHLNELILSLRSIAKDKKL
                     LILSNGTAVLDEDKFNALLKLDVVKFSLDSAVTKTFYRIDRALKNIDLEKMIEKMADF
                     RARFNGDLIMEILVVKDLNDNEEEFKALNQALKKIMPLRVDLSTIDRPPAYAVKKVSE
                     EKLLELSKLIDSTPVLLAKRHYEGEKLSFNEEELLKMLHLRSQSEIDIEVKFDEQSKT
                     LLNQLIKEKKVKILDLAGVKFYKV"
     gene            complement(19703..20899)
                     /locus_tag="ACJFD7_000119"
     CDS             complement(19703..20899)
                     /locus_tag="ACJFD7_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0858974.1"
                     /translation="MILAGIIFIFNLILAYLSIDISKLDSVTEQLKIGMFSSIFVLSL
                     TLFIFAFRQNRNINKIYQKIFCMQNDFLNFQKKIDVDSALDLLKEKFETTSQNLTKIS
                     HEKDRYLHLLEENLYQLGNISNAMRCLNEGYNKEINSLILNALNSQKDQIRLELNEAL
                     EHHKSIIGTSHGKVLQFEASVAIVNNDELENFLLANLLSYFGIESTCFKNLSFDVNDF
                     HLIFIKDKIFNENVKKNYDFIVMGRHKNTHYEYFLTLPFEKKDLENILQNKLDKVCAL
                     KFKTPYQNNVLLFKQNDFDATLFFNIIEKQCDKNICINSFSQLKQELSKETYRLILLD
                     YELIKFDLEQMRNLLSAYKKQHPQSHIIFFSKEKVRDFDCVSEVLSDVSRNDLIILLR
                     KYLPKA"
     gene            complement(20901..22703)
                     /gene="uvrC"
                     /locus_tag="ACJFD7_000120"
     CDS             complement(20901..22703)
                     /gene="uvrC"
                     /locus_tag="ACJFD7_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HGG0858975.1"
                     /translation="MIKENLENELKTLPNSTGVYQYFNQEGKLLYVGKAKNLKNRVRS
                     YFAFTPNLHANPRNSLRIQKMIEETVHLEFIATNSEADALILENSFIKQLHPKYNILL
                     RDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
                     ASCKSPCIFYQISRCLAPCDKLISKEKYLEILDEAIHALLNPSVLLKNLEKQMLVLAQ
                     NENYEEAAKVRDQIAMIKDLEVKVEIDIAKLEDFEVFALAFENSLLSTLRFVVQNGKI
                     ISANSKITPIKNDIQWDQNEIYKQLILENFSMDIPLLANVIYVYEEFEDRVLLEEILS
                     QRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKFYFELENLPN
                     DIEIFDNSHLQGVANVGAMVTYRINSWDKSKYRKFHLKHKNDYDQMREVLTRRALDFD
                     KIPPPDLWLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHS
                     LKGEFNLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANLGLSSGVIQK
                     LLAYYGNFESIYKADFKDLTMLVGRKAAQKIKEN"
     gene            complement(22696..23190)
                     /locus_tag="ACJFD7_000121"
     CDS             complement(22696..23190)
                     /locus_tag="ACJFD7_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0858976.1"
                     /translation="MGKRNNIKMTKNASAVINELMDKPHYKPLKTLFFCKDFLSSFPL
                     AKQRLIAKIYVKNHILNIITLHPAAYQELNHDDSKIYIKFLIKAYGQKYPLSGFVDIK
                     DIKIFSQKYTYAANKNKNDEKLSKNSYLELSKGEFKNCFEDEKLFKKFEDLRELIKKG
                     SNLD"
     gene            23329..24864
                     /gene="guaA"
                     /locus_tag="ACJFD7_000122"
     CDS             23329..24864
                     /gene="guaA"
                     /locus_tag="ACJFD7_000122"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HGG0858977.1"
                     /translation="MKKADILVLDFGSQYTQLIARRLREQGVYAEILPFNVSLADIKA
                     KEPKGIILSGGPASVYATDAYFCDKGIFDLNLPVLGICYGMQLMAHHYKATVAPAGHK
                     EYGKANIEIKKDNALFKNLPKKQTVWMSHSDKVENLPQGFEVLATSENSPFCVFGNED
                     KKFFALQFHPEVQHSEFGKNILKNFAKYACNCESVWNMGSFAKTQAEKIREEVGNDKV
                     LCAVSGGVDSSVVAALLASAIKEQVIVVFVDNGLLRSEEKEQVEFMFKNTLGIDLISI
                     DASEIFLSRLANVTDPEQKRKIIGNTFIEVFEEEAKKHKDVKYLAQGTLYTDIIESSV
                     VGASKTIKSHHNVGGLPEKMNLKLIEPLKEIFKDEVRALGLELGLSKEVVYRHPFPGP
                     GLAIRIMGEVNRASLELLRKADVILLEELKSTGWYDKTWQAFCVLLNVKSVGVMGDNR
                     TYDNAVCIRVVDASDGMTATFSHLPYEILENISRRIINEVEGINRVVYDISSKPPATI
                     EWE"
     gene            24950..26410
                     /locus_tag="ACJFD7_000123"
     CDS             24950..26410
                     /locus_tag="ACJFD7_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0858978.1"
                     /translation="MHGKIAIYMDSTGRGTVTNSANTFFDFNRQIWNDKKSMPSVGML
                     VEFRTLSSEKKAEDGKLVQTSKTITGIKPSKFQEFKEGDFITEHDFWKTDNDDELEDL
                     QNSRRSAYITELYRTTDFDTIEKIPLSFTIPQAIQKYFAHEILSVETLQANLQDEKEI
                     PCILDYLILKRFLFKAYDTLIFMDNSIDQTQFSALKSIMMHLENSYKQMMADQKPNIT
                     KIFNETFLSLQCHYQALVATIDTRKNRLASLEAQMKTLQSEINLKSNATDADPEKLKA
                     RQERLAKLQKEAEYYRTTLKRLDAIREDFYKKNYNIFENAFKLSREKLFKKIVTGLNL
                     CATIMDVKIWHLSLKSSGVKNSYFTMSNIENSFCSLSFAEHYLSRLNKSALNPFDQKL
                     LVYIQKITKEQRKKFLVVTSDLDLLCKLKIENFSQNPYYLVKYAPKKVNYQSLMRDNT
                     FDIVYIDEKHVWENVADIILQGKHFDKSGKTKFKLI"
     gene            26650..27900
                     /gene="purD"
                     /locus_tag="ACJFD7_000124"
     CDS             26650..27900
                     /gene="purD"
                     /locus_tag="ACJFD7_000124"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HGG0858979.1"
                     /translation="MKIMILGSGAREYSIALALRRVDKNLEFYFAPGNGATESLGTNL
                     NLKDPVVLATYAKEKGFDLCIVGSESFLAEGVVDIFKQQGLAIFGPSKAAAMLETSKS
                     FMKSFLKKYRIKTAKFLNTNDIEKAKNFIYSLTPPIVVKADGLCAGKGVIIAKTHEEA
                     IEETAKMLSGESFGDAGKLVVIEEFLDGYELSIFAVCDGNDFVLLPAAQDHKKLLDND
                     QGPNTGGMGAYAPSSLANESLLRKVQKDIILPTLAGMKKEGAEFCGVLFIGAMIVGNK
                     PYVLEFNVRFGDPECEVLMPLIEDPLELILAATQRRLRHSKIKIKKEFAVGVVCASEN
                     YPYKSSPKSEITVNNIPENSHISYAGVSLEDGKLMADGGRVLVCVGTGKSIEEAQKNA
                     YKLCDNVNFKGKQYRKDIAHQVLK"
     gene            27897..28349
                     /locus_tag="ACJFD7_000125"
     CDS             27897..28349
                     /locus_tag="ACJFD7_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HGG0858980.1"
                     /translation="MKENLQDRLERENLKIASFGKRVLAFLIDDMVISLIVFIIFYDR
                     LIQAKDLFETTQIVGNFYLGFILLHFSYQAIFTYLYGASLGKILCKIIILDENLLDKP
                     NLIQSCIRSAVRQVSAMAFMLGFAWALSNDLRKAWEDYLARTIVVDVA"
     gene            28339..30387
                     /locus_tag="ACJFD7_000126"
     CDS             28339..30387
                     /locus_tag="ACJFD7_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HGG0858981.1"
                     /translation="MWRKFSLLLGTSIALNAAQVDIYALDAKKEGDILTANNDVVIFS
                     DFYFITANKAIYNEKTGDVELFGDVNILRGQNERSHSDYAKINLNSNQADFSNFFFSN
                     NNLEVWFQSKTSHLNDKVFESKVSAVSSCNVEDPDWEIRFSKGWLNRETNFVHLYNAR
                     LYVKNTPVFYLPYFGFSADTHRQSGLLIPKIVLKSSEGLYYEQPIYIATQENWDLELD
                     PQIRTNRGFGLYSTLRFLDSPYSTGELNFGAFRENSSYFHDENLKNQTHYGIELKYSR
                     DDLIKSLLSDNFQEGLWIDATYLNDVDYLNLGSRDYRDLNSLVTSKINYFLADENNFY
                     GAYARYYIDTSKLSNNTTLQEYPSFQYHRFLNNLFDERLRYSFDASFHNFYRPAGSYA
                     NELNLDLPISYHNAFFGDFLHFTFTERFYASFVNYSNNPERNHEHYFRNTHDFNLYTD
                     LSKAYENFFHTLNLGVNYVLPGAKSGKITQDYLEEYDKENEHTSLYAVQYFYNNEGQK
                     KLKHRISLDYLNKQNEFYELENLLTYYFNENINLNSEVLYSYEQSRFTNVISQIEVNA
                     NSKFNWMFSHAYQNDEYGKYSFIGTRANYIATPNYNLFGGIWFDTQRAHANMWELGYT
                     YQRKCWNYSLMYRERIDPQLTSGGITAKNQSGVYFIFNFYPLGGVKYDFSLAESENKI
                     "
     gene            30457..32616
                     /locus_tag="ACJFD7_000127"
     CDS             30457..32616
                     /locus_tag="ACJFD7_000127"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HGG0858982.1"
                     /translation="MQYSIKINKNTEIFNIDKVAKQAAGAVLMRQGKSVVLATVAREE
                     KQVEEDFLPLTVQYIEKAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGY
                     AYPTQIVVMVLSADPKVDLQVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNP
                     NNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNEL
                     SEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIELKNEIEYPEILAFIENNFQKQ
                     IKEAINQMAKSERASELNKIAKEISNLEIAKEWSEESVLNTLAKVKRKLIREQILNED
                     KRADGRSLNEVRPINIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEK
                     NPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLVS
                     EILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIMGLEDH
                     DGDMDFKVAGSKDGVTALQMDIKLGGIDQEILKQALYQAKEGRIHILNIMEEAAKEII
                     VNEEVLPKLELFSVDPSKIVDIIGQAGKTIKEIVEKFGVSIDLDREKGEVKIAGSQNE
                     QIKAAKDYIINITSSQKGTKKGSKDKDISGFELGQEFQGIVKKIAPFGAFVELKNGVD
                     GLLHSSKSKHLNLSENQSLKVKISEIKNGKISVDLCE"
     gene            32613..33095
                     /locus_tag="ACJFD7_000128"
     CDS             32613..33095
                     /locus_tag="ACJFD7_000128"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033958 - DNA-deoxyinosine glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006285 - base-excision repair, AP site
                     formation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HGG0858983.1"
                     /translation="MSEFLTHPFEPFFDKDSKILILGSFPSVKSRQDGFYYQHPRNRF
                     WPILETLFDVRLENITEQQAFLRKKHIALWDVLQSCKIKNSDDKTISYAKANDLSPIL
                     SQTKIQAIFTTGQSAYKFFIKFHPRLKAIALPSTSPANLNFSFEQLLQNYEIIKKFTK
                     "
     gene            complement(33138..33800)
                     /locus_tag="ACJFD7_000129"
     CDS             complement(33138..33800)
                     /locus_tag="ACJFD7_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HGG0858984.1"
                     /translation="MEMILFVLVMILLVLLFVVLFRQYKSPKIEEKSTQSFSDIMQLK
                     SIGELSVFQVFSKEIVTKKDSAFNGIWKNLLGWSLSERQIALIFEFEITFLYDLRDKN
                     FDILPLGDDAYKIIMPECRYKHSIIDMKFYDEKNAKFLPFLLPDSINSTGISFSESDK
                     NKLIKEAKDEVKDLSLNLIQNLESKIHKSAKDTLEAIAKGFGAKRVEFEFKDNTQKLD
                     IN"
     gene            complement(33818..35002)
                     /locus_tag="ACJFD7_000130"
     CDS             complement(33818..35002)
                     /locus_tag="ACJFD7_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0858985.1"
                     /translation="MENFNRTLLVCWFGVFTTSMGLSQIAPILPFYIKELGHVDTSEI
                     AFYSGLAFGITPLFMAVFSPLWAFLGAKYGYKNMLLRASFGMSVLTLWLSFAHSALEV
                     VFVRGLTGIISGFTSAAVVFIAVIAPKEKVAYALGTLSTASISGSLLGPLFGGFVTEF
                     FSISTVFDMVAFLIACSFVTIYFFIHERKIQKEAKKNTQKVKENKTLIIVLFITTFVI
                     QFGTFGVMPILSIYVEQIHQGGNLALWAGIVVAASGISNLFFAPKLGKIADKIGPSKI
                     IFGALIFCGICFYLQAVVSNVYTLIFVRLLIGVGLGGLLPCVNALLKKSVSAKNLSVI
                     FGFNQTCQFLGNFCGAFGGGLMASHFSVEFVFTFVCLIFIINAFIFLAFEKKYIFSNQ
                     GL"
     gene            35056..35511
                     /locus_tag="ACJFD7_000131"
     CDS             35056..35511
                     /locus_tag="ACJFD7_000131"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004725 - protein tyrosine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase"
                     /protein_id="HGG0858986.1"
                     /translation="MKKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFISSAGTSG
                     EHDGEGMHYGTKNKLAQLNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNVLKNFTN
                     TQNKVLKITDFSPSLNYDEVPDPWYSGNFDETYKILSLACKNLLVFLSK"
     gene            35763..37037
                     /gene="porA"
                     /locus_tag="ACJFD7_000132"
     CDS             35763..37037
                     /gene="porA"
                     /locus_tag="ACJFD7_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group 1 major outer membrane porin protein PorA"
                     /protein_id="HGG0858987.1"
                     /translation="MKLVKLSLVAALAAGAFSAANATPLEEAIKDVDVSGVLRYRYDT
                     GNFDKNFVNNSNLNNNKQDHKYRAQVNFSAAIADNFKAFIQFDYNAVDGGTGVNNVKN
                     AEKGLFVRQLYLTYTNEDVATSVIAGKQQLNLIWTDNAIDGLVGTGVKVVNNSIDGLT
                     LAAFAADSFMAAEQGADLLGHSNISTTSNQAPFKVDSVGNLYGAAAVGSYDLAGGQFN
                     PQLWLAYWDQVAFFYAVDAAYSTTIFDGINWTLEGAYLGNSLDSELDDKTHANGNLFA
                     LKGSIEVNGWDASLGGLYYGDKEKASTVVIEDQGNLGSLLAGEEIFYTTGSRLNGDTG
                     RNIFGYVTGGYTFNETVRVGADFVYGGTKTEAANHLGGGKKLEAVARVDYKYSPKLNF
                     SAFYSYVNLDQGVNTNESADHSTVRLQALYKF"
     gene            complement(37152..>38260)
                     /gene="dnaJ"
                     /locus_tag="ACJFD7_000133"
     CDS             complement(37152..>38260)
                     /gene="dnaJ"
                     /locus_tag="ACJFD7_000133"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HGG0858988.1"
                     /translation="YEILEITQNADKETIKKAYRKMALKYHPDRNQGDKEAEDKFKLV
                     NEAYEVLSNDEKRAIYDRYGKDALKGGGFGSNSSGFGGFEDLGDIFSSFFGEGFGSSR
                     RRKSSNDEKIPSDFIVNLKLSFKEAVFGCKKNIDFTYKCSCKTCNGTGAKDGKLQTCP
                     KCQGRGQIGVSQGFITFAQTCPDCQGIGEKASEKCSDCKGLGYNESKDSVELNIPEGV
                     DTGMKLRVNAKGNILKNGTRGDMYVKIIAAEDDTFIRDDDDIYIEFPVFFTQAILGQS
                     IKVPTIRGEATLNLPKGAKDGQRFVLEKEGVKDVHSSRMGNQIVQISIKFPTSLNDEQ
                     KELLEKLSESFGIKDGMHQEQKGLFEKITNWFKS"
BASE COUNT        13812 a         6099 c         5733 g        12616 t
ORIGIN      
        1 taaggagtta aaatgcttcc aaaatgggat aacagctata gtgtgcacaa tgctaaaatt
       61 gatgagcagc ataaaaagct ttttaaactt gctgcaaaag ttgaagttgt atcagataga
      121 tctgtaagta aaaatgaagt caaagaactt ttggctgaat tttttaatta tatgaaagat
      181 cactttaatg atgaagaaaa atacatgcag ctaataggct atccaaattt agaagaacat
      241 cgaaaaatac ataaagaaat catccaaacc atgattaatt taatcaaaga tatcaaatca
      301 accaatgatc ttaaagaaaa actttatata gtggctaaaa agtggctttt agaacacata
      361 ctatatgaag acatgaaagt tgaaaaatgg agaagttctt ctttgtctac agatgatggt
      421 ggcgatgtta gctttgaagc agcagaagat gaagataatg agcatccaca attttatctt
      481 tatacctgta attgtcctgg taaaattcac gatgttcctt atagcattca tcaaaaaata
      541 gaattacaag gtcataaatt tacttgtaaa acttgtaaac aagctataaa attttacaaa
      601 aaatattctt aaggaggata aaatgaaacg caatgtaaaa acttattctt ttagaatgcc
      661 tttagagctt aaggagcgtt tggataattt aagtaaaaat ctttctaaac caaaatcaac
      721 catagtaaaa gaagccatag aggcttatct taatgaagtt gaagattttt cttttgctgt
      781 taatgcccta gaagaactta aagatgggga ttatcaaaag gcaagtaaaa aaatagataa
      841 aattgtcaaa aatcttaaac aaacaaaata aaaaacttta tcacaatttt tttgtgataa
      901 agacttatta attttttata ttaaaataca tttatgaata ttaaaaatgg agttaaaaaa
      961 gtggctccgg atgtaggatt cgaacctacg accaatcggt taacagccga ctactctacc
     1021 gctgagctaa tccggaatat ttaaaagtaa aatgtgatta tagtgaaatt aaaaaacttt
     1081 gtcaagggtt ttttcacaaa aatgcatttt ttatgtaaaa aaattaattt actccttaac
     1141 aataacactt tttaaatttc taaaataaaa caaatttacc ccatcttcat ataaataatc
     1201 aagcttcatt ccatgtgttt ctaaaatagt atttacaata taaagcccta atccaaaact
     1261 tgatttttgt tttgatcctt gagtaaaagc ttgagtatag tattctaaag tattgttaag
     1321 ctcaggacca cgatttttaa aacaaatata atcatctata atatcaattt gcacaaaccc
     1381 atcttcagaa tgtttaatac cattatctat catattttta atcgccgtag taaaaagttt
     1441 aaaatccaca tttacaaaaa aactttcttc cataaaaata cgtatattgc tatcatctcg
     1501 cattgcaatt tctttggctt catctaaaac atctaaaata ttgtattttt ttctatttat
     1561 aaaagcagcc cctgaagtaa tttgctcaat agcagcaaat tcattaatta aaatttcaag
     1621 tctagtaaaa accccattta agcgctcttt atatttatta tcttctatca tttctaaagt
     1681 taagagccct ttagtaatag gagttttgag ttcatgcata atatttctta aaaaaaactg
     1741 acgagattgg tttaactttc gaatttgaac aatagcttga taaaaagctt cacttacttg
     1801 tgaaatttca tccaccccag tgcttacatc ttctatatca ccaagctttc cttgggcaaa
     1861 tttatcaatt tgttttttaa gtcttttaag tggttttaat tttttaaata tataaatata
     1921 aagcaataca agaatacaaa tcacagctac agctatagct ttgataataa aatacctata
     1981 ggtttgataa tcttgatcct tataaagata aacctttcca tcataaataa tatttaaata
     2041 cacctgtcta ttataagaaa taatctcgat taagccattg ttaacctcaa ccctagctaa
     2101 aacatcacct ctaaaaagaa ttttacggat ctgctttgct tctgttatct catccatttt
     2161 attataattt tttgtctgct cttcaaattc tttttcactg ataactcctg caaaatttaa
     2221 gagccttgca ttagctatca aagaatattt tgtatttaat tctctagtat aattttgctg
     2281 atcatattct ataagccaca aaaagccaag tacaacacta accccagcaa aaataaaaat
     2341 aaaagttata gtataaaaaa tcgaagattt attcattgag taagcttata acctattcca
     2401 cgtatagagt gaatatattt tggagttttt ggatcatctc ccatcttttg acgaattcta
     2461 ctgataataa catctatact tttattacta gaatcctcac taatagaaga acaattataa
     2521 acaagctctt cacgacttac cactccaccc tcttttttaa tcaaatagct taaaatatca
     2581 aattcagcat tagttaaagt aagctcttgt cctttcatgg taataatatg cttatattga
     2641 tcataaacaa gatcttttac actttttgct atggcgcttt ttgtatttga aatacgtctt
     2701 aaatgacttt taatacgtgc ttgtaattct tttggattat aaggttttgg taggtaatca
     2761 tctgctccaa gctctaaagc attaacctta tctgtaatat catgtcttgc gcttgaaaca
     2821 ataataggcg tatcatactt tttacgaatc tcttcacaca cttcaagccc atcaagccct
     2881 ggcaaagaaa ggtctaaaat gataagctga tattctttta atgcaagctt agaaagacct
     2941 atataaggtt catgagctat atcaactttc atatcaaatt tttccaaata ttcagctgta
     3001 atttctgcta attctaaatc atcttctatc ataagaatat ttgtcatagt tttcctttat
     3061 tttaaactta attttaattt taaactaaaa tttataacga aaggaaaatc cttccgttat
     3121 ttttatttaa gcagaagcaa agtcgcaaaa ccattgcgat atacccaaac tttggtaaat
     3181 tcttttttat taacttgttt taaagcttgt tctaaatctt ttaaattttt aatttcactt
     3241 tgtccaacac ctatgataat atcaccctct tggaaaccag aattttttcc tttgctcttt
     3301 tctttaacac tatcaaccaa aacaccatta acatcttttg gaatttgcaa acgatcctta
     3361 agtcttggat ctaaatttct caaactcaaa ccatcaatca aatcgctttg tacgccttta
     3421 ggattttctt tttcaccttt aagaataaaa cttgcttgct tattttctcc atctctttcg
     3481 taacttaatg aaattttttg accaatctct aaagttccta tataattttt aagatcaata
     3541 ggacttttta taaccttatc attaacttta gtaactaaat ctccacgctt aagccctgct
     3601 tcatcagcac ttgaaccttt ttgaacatca gtgattaaag ctccttcttg atttttgtaa
     3661 gcttttttag tatcaccttg caaagctaaa atagtcacac ctaaaaatcc tctatcaatc
     3721 ttgccttttt caataagttt tttagctata tctttaacca tatttgaagg tatggcaaaa
     3781 cctatgccat tatttccacc accacgagaa agaatagctg aattaatacc tactaaatat
     3841 ccgcgactat ccaccaaagc tccacctgaa tttcctggat tgatagaagc atctgtttgt
     3901 ataaaatttt catattgatt taaacctata ttgtctttat ttaaagcaga tattatccca
     3961 cttgtaacac taaaaccaac tccaaaagga tttccaagtg caaaaacaac atctccttcc
     4021 attaaatcat cagaatttgt aaaagtaata gctgaaagat tattagcctc tatttttata
     4081 acagccaaat ctgtttttgg atctttacct ataagttttg ctttatattc tatgtcgctt
     4141 cctggtaaat tcactgtaat cgtatcagca tcatctacaa cgtgattatt tgttactata
     4201 taaccatctt ttgaaataat cacccctgat cccaaagaac tcaccacttc tttatcattt
     4261 tttccttttc tttgagaaaa atcaaaatca aaaaattgtt taaaataagg atcattaaaa
     4321 aaatcatcca aagggcttgg acgatttgct cttgtaatag tttttgaggt ggaaatatta
     4381 accactgatt tttttgcatc tttaatagaa tcatgataag aaagcactgc atttccagca
     4441 gcaggattca cacgattagc cgttgcagtc gattcgttaa aattaatact tgcagcaaat
     4501 aaagcacttg ctaaacttaa tgataaaaaa atctttttca tttcatttcc ttttgttctt
     4561 aaagataaat tatctcgtaa aatattttac tgtcttcata gtataaaacc gaaaatttac
     4621 aaaattgtaa ataaaacctt gagtgataaa aatttataaa acttgattga cttaggctaa
     4681 agtttatgtt ataatttaat cctctatata atcaagtaaa aatttttaag gaaatataac
     4741 atgaatagtt tatacgaaac tcttggagtt agcaaaaacg ctagtgcaga tgaaataaaa
     4801 aaagcttacc gtcgcctagc tagaaaatat catcctgata tcaacaaaga aaaaggtgct
     4861 gaagaaaaat ttaaagaaat taatgctgct tatgaaattt taagtgacga aaaaaaacga
     4921 gctcagtatg accaatacgg cgattctatg tttggtggac aaagttttca tgatttttca
     4981 agaaatactg gtggggtaaa tttggacgat attttaaaag atctctttgg aggaggcttt
     5041 ggtggacgct caagaggggg ttttaacggc ttttcttcaa aaggctttag cagtggtttt
     5101 ggaggatttg gaggttttga agaagaaatt ttagacagca atctagagct tcacattcct
     5161 ttcgaaaaag ctgttaaagg cggggaacat agttttaatt ttcaaggcga aaccattaaa
     5221 tttaaaattc cacatggtat aaaagaaggc gagaaactaa gaattcgctc taaaggaaaa
     5281 caaagcagaa atggagctag aggagattta atcattattg taaaaataga agaaagtcct
     5341 atttacacaa gagaagatga tgatttatat caaaaggttg atatttcttt aaaaactgca
     5401 ctttttggtg gaaaaataaa tataaaaaca ctcaaagaag gcaaggaaga agcaacaatt
     5461 aacataacgc ctaattcaaa aaataaccaa aaaattcgtt taaaaggtta tggtgtgcaa
     5521 aatagaaaaa gtgatattta tggggatatg tatttgattt taaatgttgt tttgccaaat
     5581 ttagataccc ttgatgaaaa atttatagaa ctcttaaaag aaaaattacc ttaaagaaag
     5641 gaataaaata tggaacagca ttatgatgaa cctgtatatt taatcagtgt tgtggctaaa
     5701 gttttaagca tacatccaca aaccttaagg caatacgaaa gagaaggatt gatagagcca
     5761 agtagaaccg atggcaaaat aagactttat tctcaaagag atattgaccg tattaaactt
     5821 atattgcgtt taacaagaga catgggaatc aatcttgctg gagtagatgt tatcttaaaa
     5881 ttgaaaaacc aacttcacga atttgaaaat ttaattgatg aactacgctt agaattaagc
     5941 aaacaacaag ataaagaagc ggctagtaaa gccgttgtta agcataaaaa tagctttgat
     6001 ttgatttttt atgagaaaaa ataaaaaata atggataatt ttttagaaat ttttttaatc
     6061 accgttgcta tagctatagt tttaaatgtc atatttaaaa aatttgaaat tccaactatc
     6121 attggatata tagctgctgg agaaatcatt tctgaaattt atcatttaag tggcaaaggc
     6181 gaaatcaccc atatagccga atttggtata gtgtttttaa tgtttaccat agggcttgaa
     6241 ttttctttta agcatttaat ggcaatgaaa caagaagttt ttttaaacgg ctctttgcag
     6301 atgcttactt gtggctttgt ttttatgtta cttgctatag gaattttagg acttggagat
     6361 aaaagcgcta ctatagtagg ctttgcacta gcgctttctt caaccgcagt ggtgcttaaa
     6421 attttaaatg ataatggcga tatcaatgag caatatggta gaaaagcatt gggaattttg
     6481 ctttttcaag atatagccgt tattcctttg cttttgcttg tagatatttt ttcatccaac
     6541 aatcaaaaca tagaaaaact cctttttacc actttaattt cagcacttat tttaatcact
     6601 ttattatttt tcataggtaa atatctagtg gatagaattt ttagactcat tatccacact
     6661 tcttctcagg aaatttttat tagtactgtt ttatttatgg ttattggagc aagtttttta
     6721 gcaaattatt ttggattttc ttattctttg ggtgctttta tagcaggtgc tttgatagca
     6781 gaaacaaaat ataaacacaa aatagaagcg gacttgatcc catttagaga tttgctttta
     6841 gggctttttt tcataactgt aggcatgcaa attcaacttg atgtagtggc acaaaattgg
     6901 tttttaatca tagttttaac ccttcttgta atggctttaa aatttggcat agtttttggc
     6961 tttttatttc tttacaccaa aaaaagagta gcgcttaaaa cagcttttgc catagctcaa
     7021 attggcgaat tcgccctagc aattttttct cttttacaag caaaaaatat gcttgatatc
     7081 aaaacttcac aaattttaat tgttgtttct attttaacca tgattatcac accttttatt
     7141 ttaaacaata taagaaaaat taccaatgtt gtagaagata tagcacttaa taccaacgct
     7201 gtgcaaaata ttgacagcaa tatcaagctt aaaaatcatc ttgttgtttt tggctacgga
     7261 cgcttaggac aagaagtcgt acaaaaaatc aaaaacacag gcgtacctta tcttgtttta
     7321 gaaagtgatt taaatttagt agaacttgga gttagtcgag gtgaaaatgt cgtttttgcc
     7381 aatgctgctc aagaagaaac cttaaaaatt gccaatatag aagaatgtgc cgtagctatt
     7441 atcacagtta caaatgaagc taaacttgaa attttatgtc aagtgctagc taattatcca
     7501 aaacctatag acaccatcat tcatgtaaat ggaactttaa aaaagatgct tttttctagc
     7561 atagatgaaa atatacgcat cattcgctct gaaaaagtaa tcgctagaaa tttagttcaa
     7621 gaagcgctag aatgccgcat tcacaaaaat acctaaggaa gaattttgac aaaaaatgaa
     7681 gaaaaagcct tacgcgtaaa atacctaaga aatcttgaaa aatttttcaa tggcgctata
     7741 tctgcactta aaaaagaaga ttttgataaa actaaatttg aagaaagaat gttaaaaaat
     7801 gctaaatttt ttgaaaaaaa tcccgcggta aatcttaact caacctatgc aaaaaatctt
     7861 gaattttttg tcaatgcttg tttagatttt tccaaagaaa aaaacgagct tttaaatctt
     7921 gccaatgctt tagataagca aaaaaaacaa ggtgggaaaa aagaaaaaca taaaaattat
     7981 ttaaaggatt atgaatgatt aatgtatttt ttgatatgga tggaacttta atcgatagtg
     8041 caaatgccat ttcttgtgca gtcaatgaaa taagacagga tttaaatcta gccccacttt
     8101 caagagaaat cattatgcaa accatcaata ctcccaatat tgactgggca aaagaacttt
     8161 ataatataga aaatttccat cattctaatt ttaaagaagg ctatgaaaaa tattttgtca
     8221 agcactatga acaaagcgtg gtgctttttg aaggagtaaa agaactttta gaatttttaa
     8281 aaagcaaaaa ttgtttttta gctattgcta ctaacgcccc acaaagctca ctttcaaaca
     8341 tacttaaaaa acacgatatc attccttatt ttgataaaat tttaggcgta agtttaggca
     8401 tagaacccaa acctcatcct atgatgctag agcttttaaa aagcgaggct ccatataaaa
     8461 caagcgtttt tataggagat agtcaaaaag ataaagaatg tgctaaaaat gctaatttgc
     8521 cttattttca tgccaaatgg tatcaaaaaa atttaaaaga aaatgaattt agcaactcta
     8581 gtgaacttaa agactttttg caaaagtatt tataagtttt ttaatgaaat tttagttaaa
     8641 attagaaata aattttaaaa agagtaaatt atgagtgaat tattaataga aattggtaca
     8701 gaagaattac ctgctattcc tttgctaaaa gaattagcta atatagaaaa aaaatggaac
     8761 aatgttttag aagaataccg cttggtaagt gattttaaat tttattatac tccgcgtcgt
     8821 ttagtttttt ttcatgaaaa ttttgcagac aaacaagaag atagctttgc tgaatttata
     8881 ggagcaccta aaaatgttgc ttataaagat ggagttttaa ctcctgcggg acaaagtttc
     8941 ctgcaaaaag caaggatcag tgaaaatgaa ctctctttta aagaaatcaa aggcaaggaa
     9001 gttttgtacc atcaaaaagc tattaaaggt ttgcaaagtc aagaaatttt aggagaaatg
     9061 gtagaaaaat ttttaaaaag tcttagtttt ggcaaaagta tgcgctgggg tgcaaattct
     9121 tttgaattca tccgtgcgat ccgttctata acttgcattt taaatgatga acttgttaat
     9181 tttcaaagct atggagtaaa aagtactaaa aaaactttca ttcacagaag cgtaagttat
     9241 gatttgcaag attttaacaa tgcaaaagaa tattttgaac tactagaaaa aaactatatc
     9301 atccttgatc caatcaaaag aaaggaaaaa atacttgagc aatttaaact catagaaagt
     9361 caaaaaaata tacaaattgg agaagatgaa gagcttttag ctgaagtagt tgctatcaca
     9421 gaatatccta atgcactttt aggaagtttt gaagaagaat ttttagaaat tcctagcgaa
     9481 gtaatcatca cttcaatgag agaaaatcaa cgttattttg cagtttttaa cgataaaggc
     9541 ttaagtaatc attttatagt agtaagtaat gcagtatgta aggattattc aaaaatcata
     9601 catggaaatg aaagagtttt gcgtgcaaga cttagcgatg caatgttttt ttatcaaaat
     9661 gatttacaaa atggcttaaa acctgaaaaa cttgccaaaa tgacctatct tgaaggttta
     9721 ggcacaatgc aagataaaag tttaagagag attaaaattg ctgaaatttt atgtcaaatg
     9781 ctccataatg ataaaatcga aaatatcagc acagcactaa aatacgccaa agcagactta
     9841 gccacacaaa tggtttatga atttactgat ttgcaaggca ttatgggaag ttattatgcg
     9901 caaaaaatgg gcttagatta tcaaatttgc ttagccatca aagaacaata tcttcctaat
     9961 tccgaacaag ctccacttcc aagtacagaa ttttcaagca tagtagccct tgcaaacaag
    10021 cttgataccc ttataggact ttttagcata ggaaaaattc caagcggaac aaaggatcct
    10081 tatgccttaa gaagagctgc caatgggatc attaaaattg ctttaaattt aaataaagaa
    10141 tttgatatcc aaattttatt agaaaaactt tcaaatcatt ataaaagctt tgatatgcaa
    10201 attttaaaag attttatttt tgaaagactt tatacttttt atacagtcaa tgcttctttt
    10261 gtaaaagcgg ttttaagctc acaaaataca gatcttatcc atatcaatca aagcgtaaat
    10321 gctcttataa aacttagcaa aaaagataat tttaatgaaa attttgcaac ctttaaaaga
    10381 ctagccaata tcgccactaa aaatcctcat aaagttgatg aaagtctttt tgttcaagaa
    10441 gcagaaagta aactttacaa agcttttcaa gaaaaaacta aagccaactc tttacaagaa
    10501 aaacttgaaa atctttttgc acttaagcct tttattgatg agttttttaa tcaagtgatg
    10561 attaatgctg aagatgaaaa acttaaaaat aatcgccaag ctttggttta tgaaatttat
    10621 gcggagtttt taaaaatcgc cgatcttaaa gagttaagcc tatgaaagcc ttatggcttt
    10681 ttttaagcct tactctttgg ctttttggag ctcaaaattt agaactcatc aaaggtcaag
    10741 ctttattttt ggagctagat aagaaagatt ttttatcttt aaaaaataat gataaaaata
    10801 ttcccacctt tgcacatcct aaaaatcaag aaaaagttct agctattttt tccttacctt
    10861 acaaaaatcc cccgcaaaat acaaaactta tcgcatttta taaagataaa aaagaagaaa
    10921 ttttcataaa aactttagaa ggtaattata aaagtgaaaa attgcaagtt gaaaacaaaa
    10981 agatttttcc gccaaaaacc gtaaaagaac gcatcgctaa agaattaaaa gaagccaatg
    11041 cgatttatag ctcttatact ccaaaagctt tatttaacgg tgcttttaat atacctttaa
    11101 attcttttat cacaagtgat tttggcaaag caagaacttt taatgaaaaa gtagcaagtt
    11161 atcatagcgg aacggacttt agagccgcta caggaacacc tatttatgca gccaattcag
    11221 gtatagtaaa aatcgcaaaa gatcgttatt ttgcaggaaa ttcggtagtc attgatcatg
    11281 gttttggaat ttattcacaa tactatcatc tttctaaaat cgatgttaaa gtaggacaaa
    11341 agataaaaaa aggtgagctt ataggactta gcggagctag tggtagggta agtgggccgc
    11401 atttgcattt tggaatttta gctggaggca aacaagtcga tcctttggat tttgtatcta
    11461 aatttaatgc tatttttcaa tgaaatttag tgactttttc catgcttggc tacatgaaag
    11521 ctattataaa aatgctgtaa gtataggaaa aaacggagat ttttttactg ctgtgagtgt
    11581 aggaaatctt tttggcacac ttttagccaa gcatttttta aatttaatag atgaaaaaat
    11641 tctcaaacct ccactagaac ttgtagaaat aggcgctaat gaaggctatt taagtcgtga
    11701 ttttttagcc gctttgcttg aattaagacc tgaaattttt tctcaaattt cttttttcat
    11761 catagaacca catgaaaaat taagaacatt acaaaaaaag actttagaag gagtggaatt
    11821 tactcacaaa aatagtctta aagaatgcca ttttaagaac gcttttttct tttgcaatga
    11881 actttttgat agttttactt gtgaacttat agatcatgat aaaatggcat ttgtagaaaa
    11941 ttttaaactt atttttaaaa atatggatga aaatttgatc acaaaatgca aaactttaaa
    12001 tcttaaaaaa ggcgaactca gtttagagct tgaaaatttt tttaaagatt tagatcaagc
    12061 ttgcgagaga tttatatttg tgggatttga ctatggaact ttgaatccac aaaattttag
    12121 cttaagaatc tatcaaaagc acgaagtttt tagccctttt gaagtatctt taaaagattt
    12181 tttcggcaaa agcgatctaa cttataatgt caattttgct catcttcaaa aactcatcaa
    12241 agaatatgat tttaaacctt tagcttttaa aaaacaaagt cttgctttaa tggattttgg
    12301 ttttgaagat ttattagaat acacaaaaaa taaaaacatt aaaacctatg aaagtttttt
    12361 atctcaagct aaaattttat tttttaattt tgatgaaaaa tttcattttt tcgaatttca
    12421 aaaaaactaa aattttatat ttttcatact cgctaaacaa accccctctc ttaaaccctc
    12481 atcaatgact agaagtttat gtttatcaaa caaagcataa aacaataaac aacctgcact
    12541 caaataattt tttctcatca tacctacttc ttttatagcc tttttttctt ccatatgaaa
    12601 aagtttaata gcataattta aaaaatcctt atggcaaagt tttttaccat ttactctagt
    12661 tgtttcatac ttttcatagc ttatattttg ttttaatgcg ctaagtgtag taggaactcc
    12721 ggaatttaaa accaccgttt tagcccctaa agaacgaagt tcctttttaa tcatagccac
    12781 ctcatcaaaa gccataaaag ctaaatgctt taaataggga tttgcaatta aaaaatgaat
    12841 tttaagtttt ttatctttaa tattgatgat aaatttagga tattttttta tcaatttttt
    12901 ataagaaata caagatttat aataagaatg gcaatttttt tcataaaaac taataatacc
    12961 aaaatcaaaa cttttaaaac tttttctaaa agaaagctca caagaagccc ctcctaaatc
    13021 acaatacgca aactctcccc aaattttaag ccttcttaaa cctgattgca tacctaaaac
    13081 actaatctta gcttcacttt tggcatctat aagcttaaaa tcaatcccaa attcttcttt
    13141 taaatgagca aaaatttcat ttgtattact tgcctttcta aaagctgcag tcgctacagc
    13201 tcttgctttg cttaaatctt gctctttagc taaaatactc aaagcatttt ttaatctttg
    13261 tatggcttct ttcgaaattt ctccactttg atttagattt ttcgctgccc caataacaaa
    13321 ttcatattct tttaatttat ttaatttttc atccatttgt actgctctta aagtattcga
    13381 accaagatct atacctaaca tgactttcct tgtttgattt tatagtataa tagcaaaaaa
    13441 gttctaaagg aaaaatatgc ttttaggtgt aaatatcgat catatcgcag tgttaagaca
    13501 agctagaatg gtaaatgatc ctgatctttt agaggctgct tttatagcag ctagacacgg
    13561 agatcaaatc actttgcatg taagagaaga tcgccgtcat gctcaggatt ttgacttgga
    13621 aaatatcata aaattttgca aaagccctgt caatttagaa tgtgctttaa atgatgaaat
    13681 tttaaattta gctcttaaac tcaaacccca ccgcgttact ttagtgcctg aaaaaagaga
    13741 agagcttact acagaagggg gactttgttt aaatcatgct aaattaaaac aaagcataga
    13801 aaaacttcaa aatgcaaaca ttgaagtttc actttttatc aatcctagtt tagaagatat
    13861 agaaaaatca aaaattttaa aagcccaatt catagagctt catacaggac attatgcgaa
    13921 tttgcacaac gcacttttta gtaatatctc tcatactgct tttgccttaa aagaacttgg
    13981 tcaagataaa aaaaccttgc aagctcaatt tgaaaaagaa ttacaaaatt tagaactctg
    14041 tgccaaaaaa ggcctagaac ttggcttaaa agtagccgcg ggacatggtt taaattacaa
    14101 aaatgtaaaa cccgtagtaa aaattaaaga aatttgcgag ctaaatatag gacaaagcat
    14161 tgtagcaaga tctgtattta caggacttca aaacgctatt ttggaaatga aagaacttat
    14221 taaaagatga aaaaactagc cattagtata ggcgatataa acggcatagg acttgaaatt
    14281 ttagtgcgtt ctcatgaaga actaagcaaa atctgtacac ctttttattt tatccacgaa
    14341 agcttgcttg ataaagcttc aaaactttta aatttaaaac tttttaatgc aaaaatcgta
    14401 gcttttaaag atggaaaaga ctatgagttt aattttgtaa aaaaagaaaa ttctcttgaa
    14461 atttactctt tctaccttcc tttaggcttt aaagtggatg aaaattttga aatcaaagcc
    14521 ggagaaatag atacaaaaag tggactttat agttttttaa gttttaaggc ggcaagttat
    14581 tttgtctatg aaaaacacgc ccatgccttg cttaccctac ctatacacaa aaaagcctgg
    14641 gaagatgcag gacttaaata caaaggacac accgatgctt taagggattt ttttaaaaaa
    14701 aatgccatta tgatgttagg ttgcaaagaa ctttttgtag ggctttttag cgaacatata
    14761 cctttagcta aagtgagtaa aaaaatcact tttaaaaatt taagtatctt tttaaaagat
    14821 ttttacaaag aaacgcattt taaaaaaatg gggcttttag gttttaatcc tcacgctgga
    14881 gattatggag ttataggtgg agaagaagaa aagatcatgg aaaaagctat agcctttgtt
    14941 aatgcctttt tatactctaa aaaagatgaa aaatttttca aaaaagcctt aaaagatgga
    15001 aatttacaaa aagaattgct tttaaatttt aaaggcaatg gcgtttatct accctatcct
    15061 ttagtagctg atacagcttt tactaaggct ggtttaaaaa actgcaatcg tttagtggct
    15121 atgtatcacg atcttgccct tgctccttta aaggccttgt attttgataa aagcatcaat
    15181 gtaagtttaa atttacctat catacgcgtt agcgttgatc atggcacggc ctttgataag
    15241 gcctataaaa atgctaaaat caacactaaa agttattttg aagcggctaa atttgcaatc
    15301 aatttaaatt ctaaagctta aatttagccc tagaatcaat caaatcttct ttagctaagc
    15361 tgtctatcaa atcttgcaaa tctttattgg tatttaaact ttgagtgagt aaattttcat
    15421 atttgtcaac tttattttta aaaatttgct ctaaaacttc tttaatcttt gtatcttttt
    15481 ttgctctttg cataagttct aataaagcct taatataagc ttcttgcatg caatcacttg
    15541 cattgagtaa agataaaata ggattttccc ctgcttttgt attttgcata ttttttatac
    15601 aaatttttct ttctttaagc atcttttttg aaatggcttt aaaatctttt ttcatctttt
    15661 tatctgcttt ttttgaaata ttttgatata aactactata gatgttatct actaaagcaa
    15721 gttttttatt ttcaaattca ttacgcacac caattttatt gcatatcata agctcatcat
    15781 cacttttgcc atcatatttg attttagagc aatcaaaact aggttttact tcatctttat
    15841 aaataagctc atcaaaactc aaagccccta aactcgccaa acttaaacca agcaataaaa
    15901 taattttttt cattatttac ctttaaaatt tttattttat tttaacaaaa atattttgaa
    15961 ttttttaagg aaattaagcc tttattttat tataatgcat ttttattttt tataaggaac
    16021 ttaaaatgca aaattacaaa aaagctcttt ttgcactagc tcttagtgct ttttgtatgg
    16081 gcgtaactga atttgttatg gcaggagttt tggttgatgt tgaagcgtat tttagcgtag
    16141 atgcaaaaac cgcgggctat cttacaacct tatatgctat aggtgttgtt ataggtgctc
    16201 ctcttatcac cataccttta agtcgttttc atagacatac acaactttta atcaatcttg
    16261 gaatttttgc tttagcaaat ttcatcatct tttttagcca aaatttctat cttactgcct
    16321 ttgcacgctt tatagcagga acacaacatg gggtattttt tgtcattgcc accttagctg
    16381 taagtactat aacaccagat gataaaaaat caagtgctct agctataatg gtcacagggc
    16441 ttactgtagc cttagttact ggagtgccgc ttggaacttt tatagggcat tattttggct
    16501 ttaaatttat ctttttactc atttttatca ttacaagcct agcatttttt ggagtatggc
    16561 atatgatgcc caaaaattta catcctagcc caaccagtct taaaaatcta atccctgctt
    16621 tttctcatca aaatttgtta aaaacttata ctataaccat ttgtagttgt ggggctcaat
    16681 ttgttcttta tacttatttg caaaaaatac ttgtagaaat aagcggtttt aaagtccaag
    16741 atacagctta tatcttgctt ttatatggaa tttgtgcaat ttgtgggaat ttatggggcg
    16801 gaaaaatagt agataaaaaa ggtgctattt tttctttgcg tcttatttta agcatacaag
    16861 ttctagtatt tttaagtgta tttctcacca tgtattctaa aattttaatc atttttagcg
    16921 tagctttgat aggatttttt gccttttcaa ccatacctgc actaaaaatg cttagcatta
    16981 ctaaagctaa acgccatact tataaagtca tagacagtac agtaagtgtg aatgaagcag
    17041 cttttaatgt aggcatagct ttagcaagtt ttttaggtgg gattgtttta gcaggattgg
    17101 gtatagaatt taatgcttta ttttcagcac tttttgtaag ccctgctttg atttttgcct
    17161 tgctttttgc caaagataaa ttaaattata aaaaatttca aagaaaaagt tttacaaagg
    17221 tataaattgg aatagaaatt gcttgcttat ttaatgtaaa gttaaataaa ggaggagaaa
    17281 atggtagtag ataatactca aaaaacatca aatgctatct ttagcatcac aactaaagtt
    17341 aaagaaaaaa atacttcggc agatgaattt caagccacat taaatgaagt aaaaaacaaa
    17401 gaagaaaagg aagataaaaa aacaaactca agcaaattta ctaacgaaga tattgatctt
    17461 ggtgctgtta gagaagattt tagatcttat gcttggcaaa aaatgagaga agatcaatac
    17521 aaaaaaaatg aggagacttt gctaaataag ctttttgcta caattgacgc aggaaatgcc
    17581 acaaacaata caaaggctta atatacaaat caatcaaaac tcaaactaca taaacgagaa
    17641 ttccaataat tctcataaaa tttctaataa ctctggataa aatgaaaaaa tttattattt
    17701 cctctatatg aagaaaatat agaaaaattg accaatttaa tttattaaat tctgttataa
    17761 ttttgctaaa aacaaaggaa aataatgatt tttatcgatg cttgctttaa aaaacctaca
    17821 ccctacaccc ctatttggat gatgcgtcaa gcaggaagat atttgccaga atatatggaa
    17881 gtaagaaaac aagcgggtga ttttctctct ttatgcaaag actataaaaa agcttctgaa
    17941 gtttctttgc agcctattga tattttagat gtagatgcag caatcatttt ttcagatatt
    18001 ttagttgttc ctctcgaaat gggtatgaat ttacgttttg aaaaaggaga agggcctgtt
    18061 tttgataatc ctatttcaac cctagaagac ttagaaaaac ttgacgatca aaatgcgcat
    18121 aaaaaattaa attatgtcta tgatgcctta aagcttacta gagaaaaatt atctcaaaat
    18181 aaggctttaa taggattttg cggaagccct tggactatag ctacctatat gatagaagga
    18241 agtggaagta aaaattatgc aaagtgtaaa aaaatgcttt atcaaaaccc agaactttta
    18301 cataaaattc taaataaact aactcaagtt ttaaaacttt atttagaaga gcaaattaaa
    18361 gcaggtgcca atgctataca aatttttgat agctgggcaa gtgctttaga atatgataag
    18421 ttttttaaat tctcctttaa ttatatgctt gaaatttcaa attttattaa aagcaaatac
    18481 ccaaatatac ctgtaatttt attccctaaa ggcattagcg gttatttgga tagaatcgat
    18541 ggtaattttg atgtttttgg agttgattgg agcactccgc ttgatttagc acgtgataaa
    18601 ctatcgcaca aatacactct tcaaggcaac atggaacctt gtagacttta tgataaaaat
    18661 gccatcaaag aaggagtcga aaaaatacta aaaaccatgc aaaataaagc tcatattttc
    18721 aacttaggac atggaatctt gcctgatatt cctgttgaaa atgcaaaata ttttatcaag
    18781 cttgtacaag aaagttcagc taaatgaaaa tactctttgg tcctgttagc tcaaggcgtt
    18841 ttggaagatc tttgggtata gatttaagcc ctagcaagaa acaatgcaat tttgattgtg
    18901 tttattgcga gcttgatcca aaaaaagccc aagaaaaaca agatgaaatt atcagcatag
    18961 acaaaattat ctctgaagtt aaagctatgc ttgaaaaaaa tattgaattt gattttctta
    19021 cccttactgc caacggagag cctagtcttt atcctcattt aaatgagctt attttatctt
    19081 tacgtagcat tgctaaagat aaaaaattgc ttattttaag caatggtaca gctgtattag
    19141 atgaagacaa atttaatgct ttgctaaaac tagatgtggt caaatttagc ctagatagtg
    19201 cagttactaa aactttttat cgtattgata gagctttaaa aaacattgat ttagaaaaaa
    19261 tgatagaaaa aatggcagat tttagagcta ggtttaatgg agatttgatt atggaaattc
    19321 tagttgttaa agatcttaat gataacgaag aagaatttaa agcgctcaat caagctttaa
    19381 aaaaaatcat gcccttaaga gttgatctaa gcaccataga tagacctcct gcttatgctg
    19441 ttaaaaaagt aagcgaagaa aaacttttag aactttctaa acttatagat tctactcccg
    19501 tactcttagc caaaaggcat tatgaaggtg aaaaactaag cttcaatgaa gaagaattat
    19561 taaaaatgct tcatttacgc tcacaaagcg aaatagacat tgaagtgaaa tttgatgaac
    19621 aatccaaaac tctcttaaat caacttatca aagaaaaaaa ggtaaaaatt ctcgatttag
    19681 ctggagttaa attttataaa gtttaagcct ttggcaaata ctttctaagt aaaattataa
    19741 gatcatttct acttacatca cttaaaactt cactcacaca atcaaaatcc ctaacttttt
    19801 cctttgaaaa aaagatgata tggctttgcg gatgctgttt tttataagca cttagcaaat
    19861 ttctcatttg ctcaagatca aatttaatta attcataatc aagcaaaatc aaacgataag
    19921 tctccttgct taattcttgt tttaattgac taaaagaatt tatacatata tttttatcac
    19981 attgtttttc tattatatta aaaaacaagg ttgcatcaaa atcattttgt ttaaaaagca
    20041 atacattatt ttgataaggg gttttaaatt ttaaagcgca aaccttatca agcttgtttt
    20101 gcaaaatatt ttcaagatct tttttttcaa aaggtaaagt taaaaaatac tcataatgtg
    20161 tatttttatg ccgacccatc actataaaat catagttttt ctttacattt tcattgaaaa
    20221 ttttatcctt gataaaaatc aaatgaaagt cattaacatc aaaacttaaa tttttaaaac
    20281 aagtgctttc tatgccaaaa tacgaaagta aatttgcaag taaaaaattc tcaagctcat
    20341 cattattaac tatggccaca cttgcttcaa attgtaaaac ctttccatga gatgttccta
    20401 taatgctttt atgatgctct aaagcctcat ttaattctaa tctaatttga tctttttgag
    20461 aatttaaggc atttaaaatt aaagaattaa tttctttatt atacccttca tttaagcaac
    20521 gcattgcatt ggatatattt ccaagctgat ataaattttc ttccaataaa tgcaaatatc
    20581 tatctttttc atgggatatt ttagttaaat tttggctcgt agtttcaaat ttttccttta
    20641 acaaatcaag cgcactatca acatcaatct ttttttgaaa atttaaaaaa tcattttgca
    20701 tgcaaaaaat tttttgatat attttgttta tattcctatt ttgcctaaaa gcaaaaataa
    20761 aaagtgttaa agataaaaca aaaatgctag aaaacatacc tattttcagt tgttcagtaa
    20821 cactatcaag ctttgagata tcaatactta aatacgctaa aattagatta aaaataaaaa
    20881 ttatccctgc taatatcaaa tcaattttcc tttatctttt gcgccgcttt cctgcctaca
    20941 agcattgtaa gatctttaaa atcggcctta tatatagatt caaaatttcc ataatacgct
    21001 aaaagttttt gtataacccc tgaactaagt cctaaatttg caagcttaga acttttcaag
    21061 tcctgttttt tcttagtatt ttgatgaaag ctaatagcaa aacggtgtgc ttcatctctt
    21121 aatttctgta agaattgtag ttttttatcg ttaatactta gattaaattc tccttttaag
    21181 gaatgaattt tatccttagc acccccttta gctctatgtg cttttgcatc gattttttct
    21241 tttgaaatag ctaaaatatc gacatttgcc ccactactta caatgatttc tttagccaaa
    21301 tcaagcaaag cctttccccc atctataagc cataaatcag gaggaggtat tttatcaaag
    21361 tccaaagccc tacgcgttaa aacttcacgc atttgatcat agtcattttt atgttttaaa
    21421 tgaaattttc tatattttga cttatcccaa gaatttattc tataagttac catagctcca
    21481 acatttgcca cgccttgcaa atgagaattg tcaaaaattt ctatatcatt tggtaaattt
    21541 tcaagctcaa aataaaactt taattctttt tgtatagtaa aatcatgatt tttttgctct
    21601 ttttctatat ttaaaagggc attttgaaaa gccaaatcac aaattcttct tttttctcct
    21661 attttaggga ttttaatact gattttttta tcaaaccttt ggcttaaaat ttcttctaaa
    21721 agcactctat cttcaaattc ttcataaaca taaataacat ttgcaagcaa aggaatatcc
    21781 atgctaaaat tttctaaaat cagttgctta taaatttcat tttgatccca ttgtatatca
    21841 ttttttatag gagtaatctt agaatttgca ctgataattt ttccattttg caccacaaaa
    21901 cgcaaggttg aaagcaagga attttcaaaa gctaaagcaa atacttcaaa atcttctaat
    21961 tttgcaatat ctatttcaac cttaacttcc aaatctttaa tcattgcaat ctgatctctt
    22021 actttagctg cttcttcgta attttcattt tgtgctaaaa caagcatttg tttttctaag
    22081 tttttaagca aaacactagg atttaaaagt gcgtgtatag cctcatctaa aatttcaagg
    22141 tatttttctt tgctgatgag tttatcacaa ggcgcaagac aacgagaaat ttgataaaaa
    22201 atacaagggg atttacaact tgctttttgc tttaaaggat agtataaata aagcgcatct
    22261 aaaagctctc tagcgccttt aaaaaaaggg ccaaaatatt taattttgct tttttttact
    22321 aattttctag tgatctcaaa gcgtggaaat tcttcttcaa aatccacata aatataagga
    22381 taagttttat catctcttag caaaatatta tattttggat gcagttgttt gataaaagaa
    22441 ttttctaaaa tcaaagcatc agcctctgaa ttagtagcaa taaattccaa atgcactgtt
    22501 tcttcaatca ttttttgaat tcttaaagaa tttcttggat ttgcatgtaa atttggagta
    22561 aaagcaaaat aagatctaac acgattttta agatttttag ccttgcctac atataaaagc
    22621 tttccttctt gattgaagta ttgataaacg ccagtactat taggaagagt ttttaactca
    22681 ttttctaaat tctctttaat caagattaga accttttttt ataagctctc ttaaatcttc
    22741 aaatttctta aataattttt catcttcaaa gcaattttta aattcaccct tagaaagttc
    22801 caaataagaa tttttagaga gtttttcatc atttttgttt ttatttgccg cataagtgta
    22861 tttttgagaa aagattttta tatcttttat atcaacaaat ccacttaaag gatatttctg
    22921 tccatatgct tttatgagaa atttaatata aattttgcta tcatcatgat ttaattcttg
    22981 ataagctgct ggatgtaagg ttattatatt taaaatatga ttttttacat aaattttagc
    23041 aatcaaacgt tgcttagcaa gcggaaaaga acttaaaaaa tctttgcaaa aaaataaggt
    23101 ttttaaaggc ttataatgag gtttatccat caattcatta ataacagcac tagcattttt
    23161 agtcatctta atattatttc tttttcccat aagatgattt tagcatttct tttcttaatt
    23221 ttcttctgtg cttgcggata taaaggcaac cctcaataca caagctatga acaaaatggt
    23281 tcagtaaaaa ccattaaaaa atacgaacaa ttacataggt ggtaaataat gaaaaaagca
    23341 gatattttag ttttagactt tggctctcaa tacactcagc ttatagcaag acgcttaagg
    23401 gaacaaggag tttatgcaga aattttacct tttaatgtaa gcttagctga tattaaggcg
    23461 aaagaaccaa aaggtattat tttaagcgga ggtccagcaa gtgtatatgc aactgatgcg
    23521 tatttttgcg ataaaggtat atttgactta aatctacctg ttcttggaat ttgttatggt
    23581 atgcagctta tggcacatca ttacaaagct acagtagcac ctgcaggaca taaagaatac
    23641 ggcaaagcaa acatagaaat taaaaaagat aacgctttgt ttaaaaatct tccaaaaaaa
    23701 caaaccgttt ggatgagtca ttctgataaa gtagaaaatt tacctcaagg ttttgaagtt
    23761 ttagccacaa gtgaaaatag ccctttttgt gtttttggaa acgaagataa gaaattcttt
    23821 gctctacaat ttcacccaga agtacaacac agcgaatttg gcaaaaatat cttaaaaaat
    23881 tttgctaaat acgcttgtaa ttgtgaaagt gtttggaata tgggttcttt tgcaaaaact
    23941 caagcagaaa aaatccgcga agaagtaggc aatgataaag tgctttgtgc tgtaagtggc
    24001 ggagtagata gtagcgtagt tgctgcactt ttagctagcg ctataaaaga gcaagttata
    24061 gtagtttttg tagataatgg acttttaaga agtgaagaaa aagaacaagt tgaatttatg
    24121 tttaaaaaca ctttaggcat cgatctcatc agcattgatg caagtgaaat tttcttaagt
    24181 cgcttagcta atgtcacaga tcctgaacaa aaaagaaaaa tcataggaaa tacctttata
    24241 gaagtttttg aagaagaagc aaaaaaacat aaagatgtaa aatatcttgc ccaaggcaca
    24301 ctttatactg atatcataga aagttctgtt gtaggtgcaa gcaaaaccat taaaagccat
    24361 cataatgtag ggggcttacc tgaaaaaatg aatcttaaac tcatagagcc tttaaaagaa
    24421 atttttaaag atgaagtgcg tgccttagga cttgagcttg gacttagcaa agaagtagtt
    24481 tatcgtcatc ctttccctgg gccaggtctt gctatacgca ttatgggaga agtaaatcgc
    24541 gctagcttag aactattacg caaggctgat gtaattttac ttgaggaact taaaagtaca
    24601 ggttggtatg ataaaacttg gcaagcattt tgcgtacttt taaatgttaa aagcgttgga
    24661 gttatggggg ataaccgcac ttatgataat gcagtttgta tacgcgttgt agatgcaagt
    24721 gatggtatga cagctacctt ctcgcattta ccttacgaaa ttttagaaaa cataagtcgc
    24781 cgtatcatca atgaagtaga aggtataaat cgcgttgttt atgatatctc aagcaaacca
    24841 cctgcaacta tagaatggga ataatccatt ttttctagct cttattttta atataaaatt
    24901 tttataaaaa taaggctaga atttatttaa gaaatttcaa ggaagaaata tgcatggaaa
    24961 aatagctatt tatatggatt ctacaggacg tggaaccgtt acaaactcag caaatacctt
    25021 ttttgacttt aatcgccaaa tttggaatga taaaaaaagt atgccaagtg ttggtatgct
    25081 tgtggaattt agaactcttt ctagcgaaaa aaaagcagaa gacggcaaac tcgttcaaac
    25141 aagcaaaacc ataacaggta taaaaccttc aaaatttcaa gaattcaaag aaggggattt
    25201 tatcactgag catgattttt ggaaaactga taatgatgat gaattagaag acttgcaaaa
    25261 ctcaagaaga agtgcttata taacagaact ctatagaaca acagactttg acactataga
    25321 aaaaattcct ctttctttta ctatacctca agctatacaa aaatattttg cccatgaaat
    25381 tttatccgta gaaacgcttc aagccaatct acaagatgaa aaggaaattc cttgtatact
    25441 tgattatctt atacttaaaa gatttttatt taaagcttat gatactttaa tttttatgga
    25501 taatagcata gaccaaaccc aatttagcgc attaaaaagc atcatgatgc atttagagaa
    25561 ttcgtataag caaatgatgg ctgatcaaaa accaaatatc actaaaattt ttaacgaaac
    25621 ttttttatct ttgcagtgtc attaccaagc tttagtagcc accatagata caagaaaaaa
    25681 tcgtctagcc tcacttgaag cacaaatgaa aactttacaa tctgaaataa atcttaaaag
    25741 caatgcgacc gatgcagacc ctgaaaaact taaagcacga caagaaagat tggctaaact
    25801 acaaaaagaa gcagaatact acagaacaac actaaaaaga cttgatgcta taagggaaga
    25861 tttttataag aaaaattaca atattttcga aaatgctttt aaactttcac gagaaaaact
    25921 ctttaaaaaa attgtcacag gtttaaatct atgtgcaacc ataatggatg tcaaaatttg
    25981 gcacttatct ttaaaatcat caggggttaa aaattcttat tttactatga gtaatataga
    26041 aaattctttc tgttctcttt cttttgcaga acattactta agtcgcttaa ataaatccgc
    26101 tctaaatcct tttgatcaaa aacttttagt gtatattcaa aaaatcacaa aagaacaaag
    26161 aaaaaaattt ttagttgtca catcggattt agatttatta tgcaaattaa aaattgaaaa
    26221 cttttcacaa aatccgtatt atttagtaaa atacgcacct aaaaaagtaa attatcaatc
    26281 tttaatgcgt gataacacct ttgatatagt ctatattgat gaaaaacatg tttgggaaaa
    26341 tgttgccgat attattttac aaggaaagca ttttgacaaa tcaggaaaaa ccaaatttaa
    26401 actgatttaa gacatagaaa tttaagctaa attaagttat aatttccttg cctaaacagt
    26461 ttgtagtatt taaagtgatc caacacattt ttattaactg cgattgtgtg atttaccgtg
    26521 ttctgtggca tcgtttgagc tttgaaaaaa gtgagaagtt gcagccttta aaaattacct
    26581 agcggttttc tttgactttt tggggtcaat ctttgttaaa cggctgtttg ggtttaaaag
    26641 gagatataaa tgaaaataat gattttgggt agtggtgcaa gagaatattc tattgcttta
    26701 gccttaagaa gagtagacaa aaatttagag ttttattttg ctcctggaaa tggcgctacc
    26761 gaaagtcttg gaacaaattt aaacctaaaa gatccagtag ttttagcaac ctatgcaaaa
    26821 gaaaaaggtt ttgatctttg tatagtagga agtgaaagtt ttttagctga aggggttgta
    26881 gatattttta aacaacaagg acttgctatt tttgggccaa gtaaagctgc tgcaatgctt
    26941 gaaacctcaa aatcttttat gaaaagcttt cttaaaaaat accgtatcaa aacagccaaa
    27001 tttttaaaca caaatgacat tgaaaaagca aaaaatttta tatatagttt aacccctcct
    27061 atagtagtaa aagccgatgg actttgcgca ggaaaaggtg ttatcatagc taaaactcat
    27121 gaagaagcca tagaagaaac agctaaaatg ctgagcggag aaagctttgg agatgctgga
    27181 aaactcgttg taattgaaga atttttagat ggttatgaat taagcatttt tgcagtatgt
    27241 gatggcaatg attttgtttt acttcctgca gcacaagatc acaaaaaatt actcgataat
    27301 gatcaagggc caaatactgg tggaatgggt gcttacgctc ctagctcttt ggcgaatgaa
    27361 agcttgctta gaaaagttca aaaagatatt attttaccaa ctttagcagg tatgaaaaaa
    27421 gaaggagcgg aattttgtgg tgttttattt ataggtgcta tgatcgttgg aaataaacct
    27481 tacgtattag aatttaacgt tcgctttggc gatcctgaat gtgaagtttt aatgccttta
    27541 atcgaagatc ctttagagct tattttagct gctactcaaa gacgcttaag acactcaaaa
    27601 atcaaaatca aaaaagaatt tgcagtaggg gttgtatgcg caagtgaaaa ttatccttat
    27661 aaaagttcac caaaaagtga aattaccgta aataacattc ctgaaaactc tcatatttct
    27721 tatgctggag taagcctaga agatggcaaa ttaatggctg atggtggaag agttttagtt
    27781 tgcgttggca caggaaaaag tatagaagaa gcgcaaaaaa atgcttataa actttgtgat
    27841 aatgtaaatt tcaaaggaaa acaatacaga aaagacatcg ctcatcaggt tctgaaatga
    27901 aagaaaattt acaagaccgc ttagagcgtg aaaatctaaa aatagcaagt tttggaaaaa
    27961 gagttctagc ttttttaatc gatgatatgg ttatttcttt gattgtgttt atcatttttt
    28021 atgatcgtct aatccaagca aaagatttat ttgaaacaac tcaaattgta ggaaattttt
    28081 accttggctt catcttgctt cattttagtt atcaagcaat ttttacttat ctttatgggg
    28141 caagtttggg aaaaatatta tgcaaaatta tcatcttgga tgaaaatctt cttgataaac
    28201 ccaatctcat tcaaagttgc atcaggtctg ccgtaagaca agttagtgct atggcgttta
    28261 tgcttggatt tgcttgggct ttaagcaatg atttacgcaa agcttgggag gattatctag
    28321 caaggacaat agtagtcgat gtggcgtaaa ttttccctat tgctaggaac tagcatagct
    28381 ttaaatgcag cacaagttga tatttacgct cttgatgcaa aaaaagaagg tgatattctt
    28441 actgcgaaca atgatgttgt tattttttct gatttttatt tcatcactgc taataaagca
    28501 atttacaatg aaaaaaccgg agatgttgag ctttttggcg atgttaacat cctaagggga
    28561 caaaacgaaa gatcacattc tgattatgct aaaatcaacc taaattccaa tcaagccgat
    28621 tttagtaatt ttttcttttc caataacaat cttgaagtat ggtttcaaag caaaacaagc
    28681 catctaaatg ataaagtctt tgaaagcaaa gtttcagcag tttcaagctg caatgttgaa
    28741 gatcctgatt gggaaattcg tttttcaaaa ggctggctta accgggaaac caattttgtt
    28801 catctttaca atgcaagatt atatgttaaa aataccccag ttttttatct accttatttt
    28861 ggatttagcg ctgatactca tagacaaagc gggcttttaa tcccaaaaat cgttttaaaa
    28921 agtagcgaag gcttatacta tgaacaacct atttatatag ccactcaaga aaattgggat
    28981 ttagaacttg atccacaaat tcgaacaaac cgtggttttg gactttattc tactttaaga
    29041 tttcttgatt ctccatattc aacaggagaa ttaaattttg gtgcttttag ggaaaatagc
    29101 tcctattttc acgatgaaaa tttgaaaaat caaacccact atggaataga actaaaatac
    29161 tcaagagatg atttaatcaa atctttactc agtgataatt ttcaagaagg tctatggata
    29221 gatgcaacct atctcaacga tgtggattat ttaaatttag gaagtaggga ttatcgagat
    29281 cttaactcgc ttgtaacctc caaaatcaat tattttttag ctgatgaaaa caatttttac
    29341 ggagcttatg caagatatta tatcgacaca tctaaactta gcaacaatac aaccttacaa
    29401 gaatatccaa gctttcaata tcatagattt ttaaataacc tttttgatga acgcttgcgt
    29461 tattcatttg atgcttcatt tcataatttt taccgacctg ctggttctta tgcaaatgag
    29521 ctaaatttag acttgcctat ctcgtatcac aacgcttttt ttggagactt tttacacttt
    29581 acttttacag aaagatttta tgcttctttt gtaaattata gcaacaatcc cgaaagaaac
    29641 catgagcatt atttcagaaa cactcatgat tttaatctct acaccgatct ttcaaaagct
    29701 tatgaaaatt tctttcatac tttaaattta ggggtgaatt acgttttgcc aggagcaaaa
    29761 tcaggtaaaa tcacgcaaga ttatcttgaa gaatacgaca aagaaaacga gcatacaagt
    29821 ctttatgctg tgcaatattt ctataacaac gaaggacaaa aaaaactcaa acacagaatt
    29881 tcgcttgact atctcaataa acaaaatgaa ttctatgaac ttgaaaatct tttaacttat
    29941 tattttaatg aaaacatcaa tctcaacagc gaagtgcttt actcttatga acaaagtcgc
    30001 tttaccaatg tcatcagcca aatagaagtc aatgcaaatt caaaatttaa ttggatgttt
    30061 tctcatgctt atcaaaacga tgagtatgga aaatatagct ttattggcac aagagcaaat
    30121 tatattgcca cacctaatta caatttattt ggtggaattt ggtttgatac tcaaagagct
    30181 catgcaaaca tgtgggaact tggctatacc taccaaagaa aatgttggaa ctattcttta
    30241 atgtatagag aaagaatcga tccacaactc acaagtggtg gtatcacagc taaaaatcaa
    30301 agcggagttt attttatttt caacttctat cctttaggag gagtaaaata cgatttctct
    30361 ttagcagaaa gtgaaaacaa aatttaaaaa ggatgaaatt tgctaaatat tttaaaaaat
    30421 tttacgaatt tattatctgg taaaaaaggg aaaataatgc aatacagcat aaaaattaac
    30481 aaaaatacag aaatatttaa tatagacaaa gtcgccaaac aagctgccgg tgctgtttta
    30541 atgagacaag gcaaaagcgt tgttctagct acagttgcaa gagaagaaaa acaagttgaa
    30601 gaagattttt tacctctaac cgtccaatac atcgaaaaag cttatgccgc aggaaaaatc
    30661 cctggtggtt atgtcaaaag agaaaccaag ccaagcgatg cagaaacctt aacagcacgc
    30721 attattgata gaagcttacg ccctcttttt ccaaaaggct atgcttatcc gactcaaatc
    30781 gttgtgatgg ttctctcagc tgatcctaaa gtagatttgc aagtaatgag cttaaatgcc
    30841 gcaagcgtgg cactttatct tagtgatata cctatgaaag ctccagtatg tggtgtgcgt
    30901 ataggaaaga tagatggaaa tttcatactc aatccaaaca atgaagagct tcaaaatagc
    30961 accctagatc tctatgtagc aggtgtaaaa gatgagcttt tgatgataga aatgagagcc
    31021 ttacctgatc aaaaagaaaa tgaaatcttt atcgaagctc cttatgctga tgttttaact
    31081 caaaccactt cacaaaatat gaatgaactt agcgaagatg aaattttaga agctctaaat
    31141 ttagctcaaa aagctatatt aaatggttca aatgcttatg aagaagcctt tagcaaacac
    31201 aaaaaaaatt ctcaaatcga actaaaaaat gagattgaat atcctgaaat tttagctttt
    31261 atagaaaata atttccaaaa acaaatcaaa gaagccatca accaaatggc aaaaagcgaa
    31321 agagcaagcg aactaaataa aatcgctaaa gaaatttcaa atcttgaaat cgctaaagag
    31381 tggagcgaag aaagtgtctt aaatacctta gctaaagtca aacgcaaact tattcgtgag
    31441 caaattttaa atgaagacaa aagagctgat ggtagaagtt taaacgaagt gcgtcctatt
    31501 aatatagaaa ccaacatctt accaaacgct catggttctt gtcttttcac tcgtggacaa
    31561 actcaagccc tagtggttgc aaccttaggc ggagaaaacg atgctcaaat gatagacttg
    31621 cttacagaaa aaaatcctat aagcgaacgc tttatggtaa attataattt tccaggtttt
    31681 tcagtaggcg aagcaagtcc tatcaaagct ccaggaagaa gagaactagg acatggaaat
    31741 ttagccaaaa gagcacttta tccaagtgtg gatgaaaact atccttatgt aatccgctta
    31801 gtcagtgaaa ttttagaaag caatggctca agttctatgg caacggtttg cggcggatct
    31861 ttagccttaa aagcagcagg agtgccaagc ttaaaacttg ttgcaggagt agccatgggg
    31921 cttatctttg aagataacaa gtatgctgtt ttaacagata tcatgggact tgaagatcat
    31981 gatggggata tggactttaa agtagcagga agcaaagacg gcgttactgc tcttcaaatg
    32041 gatataaaac taggtggaat cgatcaagaa atactaaaac aagctttata ccaagccaaa
    32101 gaaggaagaa ttcacattct aaatatcatg gaagaagccg ccaaagaaat catagtcaat
    32161 gaagaagttt tacctaaact tgagcttttt agcgttgatc cttcaaaaat cgttgatatc
    32221 ataggacaag ccggaaaaac catcaaagaa atcgtagaaa aatttggcgt ttctatagac
    32281 ttagatcgcg aaaaaggtga agtaaaaata gcaggtagtc aaaacgaaca aatcaaagcc
    32341 gcaaaagact acatcataaa catcacaagc tctcaaaaag gaactaaaaa aggctctaaa
    32401 gacaaagata tatcaggctt tgaacttggg caagaatttc aaggtattgt taaaaaaatc
    32461 gctccttttg gagcctttgt ggaacttaaa aatggtgttg atggtttatt gcatagttca
    32521 aaaagcaagc atcttaattt aagcgaaaac caaagcttaa aagttaaaat cagcgaaatt
    32581 aaaaacggaa aaatttctgt ggatttgtgt gagtgagcga atttctaact catccttttg
    32641 agcctttttt tgacaaagat tctaaaatct taattttagg atcttttcct tcggtaaaat
    32701 caagacaaga tggcttttat tatcaacacc caagaaatcg tttttggcct atactagaaa
    32761 cactttttga tgtaagatta gaaaatatca cagaacaaca agccttttta agaaaaaaac
    32821 atatcgctct ttgggatgta cttcaaagtt gcaagataaa aaattcagat gataaaacta
    32881 taagttatgc aaaagccaat gatttaagcc cgatcctttc tcaaaccaaa atccaagcca
    32941 tttttactac tggacaaagt gcttataaat tttttattaa attccaccct cgcttaaaag
    33001 ccatagccct accctcaact tctcctgcaa atttaaattt ttcttttgaa cagcttttac
    33061 aaaactatga aataatcaaa aaatttacaa aataacaaac taagcattac ccccccccaa
    33121 gtaaaacaag aaaaaagcta gttaatatct agcttttgcg tgttatcctt gaattcaaat
    33181 tccactctct tagctccaaa acctttagca atagcttcta aagtatcctt agcactttta
    33241 tgaattttgc tttctaaatt ttggataaga tttaaagaca agtctttaac ctcatctttg
    33301 gcttctttta tgagtttgtt tttatcactt tcgctaaaac taatccccgt actattgata
    33361 gaatcaggca gtaaaaaagg taaaaattta gcattttttt catcataaaa tttcatatct
    33421 atgatgctgt gtttgtatct acactctggc atgatgatct tataagcatc gtcccctaaa
    33481 ggcaaaatat caaagttttt atcccttaaa tcatacaaga aagtgatctc aaattcaaaa
    33541 atcaaagcaa tctgtctttc actcaaagac catcctaaaa gatttttcca aattccatta
    33601 aaagcgctat cttttttagt gacaatctct ttactaaaaa cttgaaaaac acttaattct
    33661 cctatggatt taagctgcat gatatcgcta aaactttgcg tgcttttttc ttctatttta
    33721 gggcttttat actgcctaaa aagcactaca aacaaaagta caagtaaaat catcactaaa
    33781 acaaataaaa tcatttccat tttaaacctt tctaaattta taaaccttga tttgaaaaga
    33841 tatatttttt ctcaaacgct aagaaaataa aagcattaat gataaaaatc aaacacacaa
    33901 aagtaaaaac aaattccaca ctaaaatgtg aagccataag ccctccgcca aaagctccac
    33961 aaaaatttcc caaaaattga caagtttgat taaaaccaaa aatcacactt aaatttttag
    34021 cactcacact ttttttaagc aaggcattca cacaaggcaa aagccctcca agtcctacac
    34081 ctataagtaa acgcacgaaa ataagcgtat aaacattact tactacagcc tgcaaataaa
    34141 agcaaattcc acaaaatatc aaagctccaa aaataatctt actaggccct atcttatcgg
    34201 cgatttttcc aagttttggt gcgaaaaaaa gattgctaat cccacttgca gccactacta
    34261 tacccgccca aagagccaaa tttccacctt gatgaatttg ctcaacatag atacttaaaa
    34321 tcggcatcac tccaaaagta ccaaattgta tcacaaaagt agtgataaaa agaacgataa
    34381 taagggtttt gttttctttc actttttgag tatttttctt cgcctctttt tgaatttttc
    34441 tctcatggat gaaaaaataa atcgtcacaa aagaacaagc gatcaaaaaa gccaccatat
    34501 caaaaaccgt actaatacta aaaaattcag tcacaaagcc accaaacaaa ggcccaagca
    34561 aacttccact tatagaagcc gtagaaagag ttcctaaagc ataagcgact ttttctttag
    34621 gtgctatcac agcaataaac acaacagcag cagaagtaaa acccgaaatt atccctgtta
    34681 aaccccgcac aaaaactact tctaaagcac tatgagcaaa gctaagccat aaggttaaaa
    34741 ccgacatccc aaaacttgca cgaagaagca tatttttata accatacttt gcacccaaaa
    34801 aagcccacaa aggtgaaaaa acagccataa aaagtggagt gatcccaaaa gcaagccctg
    34861 agtaaaacgc tatttcactc gtatcaacat gtcctagttc tttgatataa aaaggcaaaa
    34921 tcggagcgat ttgactaagc cccatacttg tggtaaaaac accaaaccaa cacacaagca
    34981 aagttctatt gaaattttcc atggatttat tgtatgatat tttttataat ttttaattaa
    35041 aactcaagga taaaaatgaa aaaaatactc tttatatgct taggcaatat atgccgttcg
    35101 cctatggcag aatttatcat gaaagatctt gtcaaaaaag caaatttaga aaaagaattt
    35161 tttataagca gtgctggaac ttcaggagaa cacgatggag aaggtatgca ctatggcacc
    35221 aaaaacaaac ttgctcaact taacatagaa cacaaaaact tcacaagcaa aaaactcact
    35281 caaaagcttt gcgatgaaag cgatttttta atcaccatgg acaattctaa cttcaaaaat
    35341 gttttaaaaa acttcaccaa cacccaaaac aaagttttaa aaatcactga ttttagtcct
    35401 agtctaaact acgatgaagt ccctgatcct tggtatagcg ggaattttga tgaaacttat
    35461 aaaattttat ccctagcttg taaaaattta cttgtttttt tatcaaaata atttaaaaca
    35521 actatatatt acttctcgtt tactttttag gcttatactt ctaaacgaac cgaaaaacat
    35581 tcataagaaa aactccttaa aattacacgc ctagcttaaa tccctttagc taggcttttc
    35641 tttagatgtt tttatccttc ggatttaaaa tttttactat tttaagtgct tcttaagaaa
    35701 aaactccaaa tttatgtgct acaattacaa tgttttatta atttttgaca aggagaattc
    35761 tcatgaaact agttaaactt agtttagttg cagctcttgc tgcaggtgct ttttcagcag
    35821 ctaacgctac tccacttgaa gaagcgatca aagatgttga tgtatcaggt gtattaagat
    35881 acagatacga tacaggtaat tttgataaaa atttcgttaa caactcaaat ttaaacaaca
    35941 acaaacaaga tcacaaatat agagcacaag ttaacttcag tgctgctata gctgataact
    36001 tcaaagcttt cattcagttt gactacaacg ctgttgatgg tggcactggt gttaataacg
    36061 taaaaaatgc cgaaaaagga ctttttgttc gtcaattata cttaacttat acaaatgaag
    36121 atgttgctac aagtgtaatc gctggtaaac aacaattaaa ccttatctgg acggataacg
    36181 ctattgatgg tttagttggc acaggtgtta aagtagtaaa taacagcatc gatggtttaa
    36241 ctctagctgc ttttgctgca gatagcttca tggctgcaga gcaaggtgca gatttattag
    36301 gacatagtaa tatttcaaca acatcaaatc aagctccttt taaagtagat tcagtaggaa
    36361 atctttacgg tgctgctgct gtaggttctt atgatcttgc tggtggacaa ttcaacccac
    36421 aattatggtt agcttactgg gatcaagtag cattcttcta tgctgtagat gcagcttata
    36481 gtacaactat ctttgatgga atcaactgga cacttgaagg tgcttactta ggaaatagcc
    36541 ttgatagcga acttgatgat aaaacacacg ctaatggcaa tttatttgct ttaaaaggta
    36601 gcattgaagt aaatggttgg gatgctagcc ttggtggttt atactacggt gataaagaaa
    36661 aagcttctac agttgtaatc gaagatcaag gtaatcttgg ttctttactt gcaggtgagg
    36721 aaattttcta tactactggt tcaagactaa atggtgatac tggtagaaat atcttcggtt
    36781 atgtaactgg tggatatact ttcaacgaaa cagttcgcgt tggtgctgac ttcgtatatg
    36841 gtggaacaaa aacagaagct gctaatcatt taggtggtgg taaaaaactt gaagctgttg
    36901 caagagtaga ttacaaatac tctccaaaac ttaacttctc agcattctat tcttatgtga
    36961 acctagatca aggtgtaaac actaatgaaa gtgctgatca tagcactgta agacttcaag
    37021 ctctttacaa attctaagaa gctttcaagt ctaacttcaa ggcggagttt tgctccgcct
    37081 ttttttatgc ctgattttta aaacttaaat ttatataaaa aattttccca agctaaaacg
    37141 ctttaggaaa attaagactt aaaccaatta gtgatttttt caaaaagccc tttttgctct
    37201 tgatgcatac catctttgat gccaaaactt tcacttagtt tttctaaaag ttctttttgt
    37261 tcatcgttta aagaagttgg gaatttgata gaaatttgaa cgatttgatt tcccatgcga
    37321 gaactatgaa catcttttac cccttctttt tcaagaacaa atctttgtcc atctttagca
    37381 ccctttggta aatttaaagt cgcttcaccg cgtatggtgg gtacttttat actttgtcct
    37441 aagatagcct gggtaaaaaa cactggaaat tctatatata tatcatcatc atctctgata
    37501 aaagtatcat cttcagcggc gatgatctta acatacatat cccctctagt accatttttt
    37561 aagatattgc ctttagcatt gacacgaagc ttcatacctg tatctacacc ttctgggata
    37621 ttaagctcga cactatcttt gctttcatta taacccaaac ctttacaatc actacatttt
    37681 tcactagctt tttctccaat tccttgacaa tcagggcaag tttgtgcaaa agtgataaaa
    37741 ccttgagaaa ccccaatctg tcctctacct tgacactttg gacaagtttg aagctttcca
    37801 tctttagccc ctgttccatt acaagtttta caagagcatt tataagtaaa gtctatattt
    37861 ttcttacaac caaaaaccgc ttctttaaaa cttaatttta aattaacgat aaaatctgaa
    37921 gggattttct catcatttga actttttcta cgacgcgatg agccaaagcc ttctccaaaa
    37981 aaactagaaa atatatctcc taaatcctca aaaccaccaa aacctgagct attagaacca
    38041 aatccaccgc cttttaaagc atcttttccg tatctatcat aaatagctcg cttttcatca
    38101 ttgcttaaaa cttcataggc ttcattaaca agcttgaatt tatcttctgc ttctttatca
    38161 ccttggtttc tatcaggatg atattttaaa gccatttttc tataggcttt ttttatggtt
    38221 tctttatcag cattttgcgt gatttcaaga atttcataat
//
LOCUS       DBBXPZ010000004        36734 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.004, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000004 DBBXPZ010000000
VERSION     DBBXPZ010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 36734)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36734)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36734
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.004"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..137
                     /locus_tag="ACJFD7_000134"
     CDS             <1..137
                     /locus_tag="ACJFD7_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0858989.1"
                     /translation="TGYLIKMNLNLDNTQVFKLSEAVDKISFMGNGKFYYGDKILDLL
                     "
     gene            134..424
                     /locus_tag="ACJFD7_000135"
     CDS             134..424
                     /locus_tag="ACJFD7_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tram-like protein"
                     /protein_id="HGG0858990.1"
                     /translation="MIKILEQTIKSLKLNLKPYDLSMLTRKKSYICAKDQNNILFMYT
                     GKTKFLMKDALFLENLAQQININNKYFFSMASLCSKAKNHLEMKGFNIYVAL"
     gene            411..1040
                     /locus_tag="ACJFD7_000136"
     CDS             411..1040
                     /locus_tag="ACJFD7_000136"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004594 - pantothenate kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HGG0858991.1"
                     /translation="MLLCDIGNSNANFLDDNKYFTLSIDQFLEFKNEQKIFYINVNEH
                     LKEHLKNQKKFINLEPYFLFDTIYQGLGIDRIAACYTIEDGVVVDAGSAITIDIISNS
                     IHLGGFILPGIANYKKIYSHISPRLKSEFNTQVSLDAFPQKTMDALSYGVFKGIYLLI
                     KDAAQNKKLYFTGGDGQFLANYFDHAIYDKLLIFRGMKKIIKENPNLLY"
     gene            1159..2505
                     /gene="mqo"
                     /locus_tag="ACJFD7_000137"
     CDS             1159..2505
                     /gene="mqo"
                     /locus_tag="ACJFD7_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HGG0858992.1"
                     /translation="MSQQEFDVLVIGAGISGAALFYELARYTNIKNIALIEKYNTAAT
                     LNSKGTSNSQTIHCGDIETNYTLEKARKVKRTADMIVKYGLMQNAQNNFMFSHQKMAL
                     AVGDIECDYMKKRYEEFKELYPYIKFFDKAKIKQIEPKVVLGEDCNQDRPENICAMGV
                     ESGEVFTTVDFGKMSINLIEQAQKQNKNTFVAFNQEIIHIEKKDDIFILKTSNHQEYH
                     AKSVVVNAGAHSLYLAHKMNLGMDKSCWPVAGSFYLTKQKLLNGKVYMVQNPKLPFAA
                     LHGDPDLLADMNTRFGPTALVIPKLERYHGLKSVPEFFEALKLDKTVLKVTFNMFKDA
                     TIRNYIFYNYLFELPFIDKSLFVKDAKKIVPSLKASDIYYAKGFGGVRPQVIDKTKEE
                     LMLGEASITETPGIIFNMTPSPGATSCLGNAERDAKLVCNYLGMEFNEDKFSSELL"
     gene            2554..3996
                     /gene="pyk"
                     /locus_tag="ACJFD7_000138"
     CDS             2554..3996
                     /gene="pyk"
                     /locus_tag="ACJFD7_000138"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0030955 - potassium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HGG0858993.1"
                     /translation="MLKKTKIVATVGPASEKEEILRQMIINGVNVFRLNFSHGTHEYH
                     KKNLDTIRRVAKELHTRIGILQDISGPKIRTGELKEPFELKKGDRLDFYRETILGEKI
                     AQNHYKISINQKSILDMLKIDEYIYLYDGSIRAKVENIDDQKIETIIENDGFLNSNKG
                     INFPNTKINIDVITQKDKNDLLWGIKNEVDFLAISFVQNAHDIDEVREILAQNNAKIS
                     IFAKIEKFDAVENIDEIIKSSDGIMVARGDLGIEVPYYKVPNIQKEIIQKANNASKPV
                     ITATQMLFSLAKSKTATRAEISDVANAVLDGTDAVMLSEESAVGIDPANAVDIMCQTI
                     IETEKRYPYNKFNDFNDLDNTDKIMHSSAHLATDLNADAIFSLTSSGKSAIKIARYRP
                     NIEIIAVGHSEKTLNSLSIVWGVNPAILVNKSNELTELLKDSVRSSVEKGFMDEDKCY
                     LLTAGFPTGVEGTSNLIRILNKEQIAYYLQ"
     gene            4094..4729
                     /locus_tag="ACJFD7_000139"
     CDS             4094..4729
                     /locus_tag="ACJFD7_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0858994.1"
                     /translation="MQVNTFSNIASMAQTQVSNKKADDAKENTKDKNVQSANSSKDVD
                     KNTLEKLNALGGKGITQIYLVQFQQQTMNAVIGSSNAQTGLDSLLNGANLDTAKSILT
                     NIDFASLGYSGKNPLDMNTDELQQLVSEDGFFGVENTANRIADFVIKGGGDDVEKLKK
                     GLEGMKKGFEQAEKMWGGELPQISQDTIDAALKKVSDRIDELGGKTLDLQA"
     gene            complement(4760..7222)
                     /gene="pflB"
                     /locus_tag="ACJFD7_000140"
     CDS             complement(4760..7222)
                     /gene="pflB"
                     /locus_tag="ACJFD7_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein PflB"
                     /protein_id="HGG0858995.1"
                     /translation="MAEQEDIILEKPEDGLNQPRLDESLEGFKGQEGQAPEDEEFASL
                     PEELPQENSDSGFKFTRESAPEDVSTFEEVESQEPTPWYKDRKFMSLVGLSLGIICIL
                     VFTLFYLTFSEGKIKPDIIASKPLEQPVVMPDESYKYNDMQRIDGMIQKANALYLKGE
                     VEQALKVYEQVAVYNESLSNYNLGVSQMNENKFQEAFESFKKAIANGENQSVAAINAA
                     VCALKLNDKEKFRYYIDLAQVYLPKEGKSKLYDYYLSLINYYKGYYPEALQMLQRTDV
                     EPYSDVAKYLSAKIYAKMDFDSKAIQQLNSQGNFESSLSLGLLYARIGEYAKAKVALS
                     TAMKIERDFNQSLAALTLVDIKTGNYQDMLARLQNSYDNDKDRYKILDTYKIQVRLNK
                     DLFNIAVAQNSFSKDLLKKQKDQFDLLFYFAPYQVFDSKQAALYIKKANVTDFVDDST
                     DVGIYLNISKALSSTNVKIANIINYALNQKLRLANQEFQKLIKDYPEHSILHYNLALT
                     YAQMQNYELAYKHFSSSYHLNPKNYLAGAFAMFCAKLIDIDTTKLYNEILDNIAADSN
                     FKANMQKSMLFLVNNNYISMLPYLDETKKDTPLSLIFEAIVAKNNNLNNQVDVKIAKL
                     RSELPEDILANILYFNSLNSNLNIKEYAQNAQIHFKNLKLDYRSVFGGPNIAREFYVN
                     LMHIAGLLNLERQKFKELINVSGAKDEGILQTLAYLDIFAQQYEEAYALYNSLIDDYG
                     AKDTKTLFLAAVAAVGANNPNSAIALLQLSKLTDKNNKESKAALGMLYQEVKNYEAAI
                     SQYKTLPNNFKSEFFTFDINNN"
     gene            complement(7232..8467)
                     /gene="serS"
                     /locus_tag="ACJFD7_000141"
     CDS             complement(7232..8467)
                     /gene="serS"
                     /locus_tag="ACJFD7_000141"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HGG0858996.1"
                     /translation="MLDLKNLQNNFDEVAKKLKNKKVDENILKKLAELFASLKKEKIA
                     LEEFQAFQNKFSKELATAEDKESLKAKLSENKSKINEQSAKVNALENELEEIAHAIPN
                     IPDECVPVGEDENENVELKKVLNPPSFDFTPKEHFELGESLNWLDFMRGVKISQSRFC
                     VLKNEGALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKVDD
                     EDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQF
                     EKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEV
                     WLPGQNKYREISSVSNCRDFQARRAKIRYKNEQGKNELVHTLNGSSLAVGRTLVAIME
                     NYQDKEGKIHIPDVLKKYF"
     gene            complement(8478..9437)
                     /gene="trpS"
                     /locus_tag="ACJFD7_000142"
     CDS             complement(8478..9437)
                     /gene="trpS"
                     /locus_tag="ACJFD7_000142"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HGG0858997.1"
                     /translation="MRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAM
                     TSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE
                     RAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKI
                     NNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFSSEKTLKKQISSIVTDS
                     TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKE
                     AREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL"
     gene            complement(9434..9931)
                     /gene="aroK"
                     /locus_tag="ACJFD7_000143"
     CDS             complement(9434..9931)
                     /gene="aroK"
                     /locus_tag="ACJFD7_000143"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004765 - shikimate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HGG0858998.1"
                     /translation="MMKAKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN
                     QKVSEIFEQKGENFFREQEQKMADFFSSCEKACIATGGGFVNVSDLEKAGFCIYLKAD
                     FEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEI
                     KKVIK"
     gene            complement(9918..11300)
                     /gene="der"
                     /locus_tag="ACJFD7_000144"
     CDS             complement(9918..11300)
                     /gene="der"
                     /locus_tag="ACJFD7_000144"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HGG0858999.1"
                     /translation="MQSIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQI
                     HIHSKKAMLIDSGGLDESDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFY
                     SLKKLGKPIALVINKVDNKKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFL
                     HEEFLIPDEEENLEDFLEYYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQ
                     ERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSH
                     SQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELRLDRF
                     KFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRAHPLPHD
                     YGKLVKIYYAVQYDLAPPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIASR
                     KKGSKENDES"
     gene            11402..12334
                     /locus_tag="ACJFD7_000145"
     CDS             11402..12334
                     /locus_tag="ACJFD7_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HGG0859000.1"
                     /translation="MVKVIKHNLGIYFMILACLDFALMGACAKILSKEMSSIEIMFFR
                     NIIGIFFIAYLLKRSKAHKEGGYFWLLVFRGVVGTLSLYMFFYNVSNITLGGAFAFQK
                     TAPIFITLIAFVVFKENIGIKGWIGILIAFGGVLLIAQPWAHNLNHSGFDLKNSVIGI
                     TSGFLAALALTSVRELRKSYTTEQIAFSFILLGTLMPLISMISAEFFEPQHLDSLHLD
                     FILAPFVMPSLAAWLIIAIMGTLGTIYQIHVTKAYGIAKQAGVVAGVSYLDVVFSMIV
                     GIILGDNLPSTMVFLGIIGIIFGGLILVKNKGKK"
     gene            12331..13146
                     /gene="kdsA"
                     /locus_tag="ACJFD7_000146"
     CDS             12331..13146
                     /gene="kdsA"
                     /locus_tag="ACJFD7_000146"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008676 - 3-deoxy-8-phosphooctulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HGG0859001.1"
                     /translation="MKKMILIAGPCVIESKDLIFKVAEQLKNFNENPNIEFYFKSSFD
                     KANRTSINSFRGPGLEEGLKILQSVKDEFGMKILTDIHESNQANPVSEVADVLQIPAF
                     LCRQTDLLVAAAKTKAKVNIKKGQFLNPSDIKYSVKKVLQTRGIEDEGYEAAQKNGVF
                     VAERGASFGYGNLVVDMRSLVIMREFAPVIFDATHSVQMPGAAGGSSGGKSEFVEPLA
                     RAAAAVGIDGFFFETHINPYEALCDGPNMLNLTRLKNCVNTLLEIQNIIKENK"
     gene            13143..13607
                     /gene="ribE"
                     /locus_tag="ACJFD7_000147"
     CDS             13143..13607
                     /gene="ribE"
                     /locus_tag="ACJFD7_000147"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HGG0859002.1"
                     /translation="MNIIEGKLNLDSNTKIAIINARFNHIITDRLVEGAKDAFLRHGG
                     KEENLNLILVPGAFELPYALKKAIESKKFDAICCVGAVIRGSTPHFDYVSAETTKGIA
                     NVSLNHNIPVSFGVLTTDTIEQAIERAGSKAGNKGFEAMTTVIEMLNLSKEL"
     gene            13607..14005
                     /gene="nusB"
                     /locus_tag="ACJFD7_000148"
     CDS             13607..14005
                     /gene="nusB"
                     /locus_tag="ACJFD7_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HGG0859003.1"
                     /translation="MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNF
                     TLNLYHGILDNLNNIDETLNSFLNDNQITALGHIERAILRLGAYELLFTDTPSAIVIN
                     EAIELAKELANDNSPKFINGVLDALIKAKK"
     gene            14002..14841
                     /gene="pyrF"
                     /locus_tag="ACJFD7_000149"
     CDS             14002..14841
                     /gene="pyrF"
                     /locus_tag="ACJFD7_000149"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0044205 - 'de novo' UMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HGG0859004.1"
                     /translation="MKLCVALDLSTKEECLQLAKKLKNLDIWLKVGLRAYLRDGFKFI
                     EELKKVDDFKIFLDLKIHDIPNTMADACEEISKLGVDMINIHASAGKIAMQEVMTRLS
                     KFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFESKK
                     IKEHTSSNFLTLTPGIRPFGETSDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAV
                     CEKILNKIHRKNISENDIEQNYEVIQQKEWDMCNHFEEWIKTQPDKEHALKEFYAKCG
                     IKY"
     gene            14838..15623
                     /locus_tag="ACJFD7_000150"
     CDS             14838..15623
                     /locus_tag="ACJFD7_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859005.1"
                     /translation="MNYQQLECDYFNLYNQFLSVDFQISLFEKDHKGLIKDFIFFYYQ
                     ILKQKDLSYLLEVRNKISLKVYNYMQEHSTSPKDLSLICLRENKHIEFFQIFYKALAY
                     FVAFRKKLDGEQKIKNLISNINDCFGYHFLNSDFNNLQNFQKSDLFTLPEKHLKYFHF
                     AMIHLCFMVLNPLNFKDSNRHLDKAINYLVDGTFEIYELIFKEYFLLFSKDKELKDEL
                     RKLKKLEFKILMQETSKIKLLNHYKEFCEEIFYNIELEKITQN"
     gene            15679..16572
                     /gene="msrP"
                     /locus_tag="ACJFD7_000151"
     CDS             15679..16572
                     /gene="msrP"
                     /locus_tag="ACJFD7_000151"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016667 - oxidoreductase activity, acting
                     on a sulfur group of donors [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HGG0859006.1"
                     /translation="MIITPENLYKKRRDFLKLGAGALISSSVLASKLSALNFTSDTNP
                     NKLEISDEELATNYVNFYEFSTDKRKAVSLAQNFNTQNWKIDISGEIEKPLTLSMEDI
                     LKFPLEERIYRFRCVETWSMVVPWVGFELRRLIEMAKPTSEAKFVKFTTLLDKSQFPD
                     QDALFPTIDYPYVEGLRMDEAMHPLTLLAVGMYKKALKPQNGAPIRLIVPWKYGFKSI
                     KSIVKIEFTKEQPKSTWESYAPSEYGFYANVNPNVSHPRWSQANERALGDFFTKPTLM
                     FNGYEKEVASLYKNMDLKVNF"
     gene            16572..17144
                     /locus_tag="ACJFD7_000152"
     CDS             16572..17144
                     /locus_tag="ACJFD7_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric reductase-like transmembrane
                     domain-containing protein"
                     /protein_id="HGG0859007.1"
                     /translation="MQTKYFKFLAYFSFIISLIYGFYHIIKAFDFVKEAYIYTGIFAL
                     IFLNLSLLFSLPKFKKTKNYPKILGIFAAFWAILHFLNYFIFDRNAQILRLFDDISHR
                     LLEASGFIAFLIIFLMLLSSFKIFKKLSKIRKLGYLCLVLASYHYFLTPKIPMFWEWS
                     ALIIALFYFIVRYTKTLKKLKSNNLTFIKT"
     gene            complement(17109..18821)
                     /locus_tag="ACJFD7_000153"
     CDS             complement(17109..18821)
                     /locus_tag="ACJFD7_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HGG0859008.1"
                     /translation="MEKLKNFLSLKNIEDTQIYKELKCAKNEALILRELCRNYVVSIS
                     SINAFTLLSTIFGNDKYLYLDALEDLKKLIERGFVNQNSSFFKSLENNKTQTLTLALL
                     QSELSLSEYFLEFLEAKPRLNFEKQEAYADYLEYLKDEFARIQLYERLSFIQKSAYNS
                     EIKNQIKLYEKHIKERLKKSKFYNVLADIFKEYNLEHKEQIIFLALLKEEYALSNESS
                     ISREMNSLLSLISENDLERHKNKKLLQENAPLLNLIEYDEYLNAFGDISKSFFIIDEI
                     LQRIINFEPKQSKKIKIESVLKDQDIFELIEPSTDINDIIMPENTKELLENILKQQDK
                     KVLERLHSWGIKSNKNIEAKIIFYGPAGTGKTMSALAMAKSMKKSVLSFDCSKILSKW
                     VGESEQNVRKIFDTYKNIVQTCKQSPILLLNEADQFLSTRVDGSSGSDKMHNQMQNIF
                     LEQIERFSGVIIATTNFLESLDSAFSRRFDYKIEFKKPDFKDRLKIWEKFLPKKALFE
                     KDFDINILSNYELSGAQILMVVKNTALKVAVSKDGVFKMQDFIESIQKELNSSFDKSK
                     IVGF"
     gene            complement(18821..19645)
                     /locus_tag="ACJFD7_000154"
     CDS             complement(18821..19645)
                     /locus_tag="ACJFD7_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859009.1"
                     /translation="MKFFLLVFCFVNLVLAQVYKGELYFYHLQDKEIFAIVYDNTPMT
                     PLFDRDKNQTSSSFLIVDDINGNLEIPLFKTNDFWQDEHKKYKINSSKMLTYDNKNFQ
                     GENLGTTTLELVETQDGIRIKRSLDFIGFKDDFKEFHPVHKGVFSFEQIRQKPIFLQD
                     GKISFEEWYYFYEDGMSRAILELNNFVYDINAHAFVKLNDLYNTENQKFQNLLHEKLK
                     NTCDECFEDLQNLQFNNNFLLNNGKLKICYLPFEGHFLDENICVEFNEDELKEFKK"
     gene            complement(19656..20132)
                     /locus_tag="ACJFD7_000155"
     CDS             complement(19656..20132)
                     /locus_tag="ACJFD7_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859010.1"
                     /translation="MKHCLALCFIFFLCACSAKNQNFSSQSLMVLIASPMIKINDAAF
                     LKKENNALNLEVYKLGQAFFELKIKDKICINAVCYDKQVFNQKFFKNVYYDDILNDIL
                     KANPLWQGRNLEKTDCGFEQNLKAKNYEIFYYVCDNKVSFFDKISHTKIILTHIQN"
     gene            complement(20141..20632)
                     /locus_tag="ACJFD7_000156"
     CDS             complement(20141..20632)
                     /locus_tag="ACJFD7_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HGG0859011.1"
                     /translation="MASEHSFDISAALDKQELKNAFEQAKKELDSRYDLKGIKCEIDL
                     SEKESIFKLSSSSEGKLDVLKDIVISKLIKRGINPNAIKELSRESGAMFRLNLKANDA
                     IDSENAKKINKAIKDSKLKVNSSIRGEEIRVVAKQIDDLQAVMKLVKELDLELNVSFK
                     NLK"
     gene            complement(20622..21557)
                     /locus_tag="ACJFD7_000157"
     CDS             complement(20622..21557)
                     /locus_tag="ACJFD7_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HGG0859012.1"
                     /translation="MKIVCLDAATLGDYDLSVFEKFGSLQIYTTTNKEQTIERLKDAN
                     VAMTNKVVIDKDVIDACKNLKLILETATGVNNIDIEYAKEKGIIVKNAAGYSTMSVVQ
                     HTFAFMFAFLNQVLYYDKWSKEGKWCESPIFTDYSRILNTLSGKKHGIIGLGTIGKEV
                     AKISKAFGAEIYYYSTSGANKNADFVHLELKDLLKTCDIISIHAPLNEKTKNLLAFEE
                     LKLLKDNAILINVGRGGIVNENDLAKIIDEKNIRVGLDVLEIEPMMKNHPLLSIKNKE
                     NLIITPHVAWASKEALNALMDIVYNNLKEWIENGK"
     gene            complement(21560..22729)
                     /locus_tag="ACJFD7_000158"
     CDS             complement(21560..22729)
                     /locus_tag="ACJFD7_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HGG0859013.1"
                     /translation="MQLLQVDKLQKDYLENIGFSWHTDEDGSDYISNKLVCVKESEAN
                     AYYEAVNELYDMFIAAAQEVIDNDRFDELGIPFNLIDAIKMSWENEVHWHLYGRFDLA
                     GGLDGKPIKLIEFNADTPTALFESAILQWALLKQNGMDESAQFNSIYESLMDNFKRLI
                     TLDESVEGFEEHYQGWKILFSSVAGSKEEEITTKLLSHIANEAGFQTNFSFVDEVEFS
                     EEGIFKEGENYEYWFKLIPWEDIAIEEGELAMLLTQIMRNQRAIILNPAYTLLFQSKG
                     ILKILWELYPNHPLLLETKDTPLEGKNYVKKPVFGREGANISIIKDGKTLHENVGPYG
                     NNKAIYQEYVEFNSCENEYYQAGVFFAYEGCGLGFRKGGLVLDNYSKFVGHIIKD"
     gene            complement(22739..23344)
                     /locus_tag="ACJFD7_000159"
     CDS             complement(22739..23344)
                     /locus_tag="ACJFD7_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0323 family lipoprotein"
                     /protein_id="HGG0859014.1"
                     /translation="MKKIKKIIQIGMIGGLAAVAGGALAGCGSNNDNADTLNQAANAQ
                     GAFVIIEETAPGQYKIKDQYPSDETRVVLKDLNGTERILSKEEMDALIKEEAAKIDNG
                     TSNLTKDNGQISSGGLSLGETLLASAAGAILGSWIGSKLFNNQNFANQQRGAFSNQSA
                     YQRSVNSFNKAGTTSSASSAKKSGFFGGGSKAVSSSSSFGS"
     gene            complement(23465..23677)
                     /gene="rpsU"
                     /locus_tag="ACJFD7_000160"
     CDS             complement(23465..23677)
                     /gene="rpsU"
                     /locus_tag="ACJFD7_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HGG0859015.1"
                     /translation="MPGIKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEI
                     RKKQKISARKKMLKRLYMLRRYESRL"
     gene            23838..25214
                     /gene="ccoG"
                     /locus_tag="ACJFD7_000161"
     CDS             23838..25214
                     /gene="ccoG"
                     /locus_tag="ACJFD7_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HGG0859016.1"
                     /translation="MQGHITNYTKKRYFVYLIASIIIFALPFIRINENHFFLLSFDHS
                     KLNLFFISFSTQEFYLMPFVLIFLFLFIFFITTLGGRIWCAWSCPQTIFRVIYRDIIQ
                     TKFLKIRKNINNKQKEYEGQYFKKFLGVIIFYFISLVAVSNLLWYFIPPEDFFNYIQN
                     PGEHLLLLGILFCASLLFTLDITYLQEKFCVYVCPYARIQSVMFDHDTMQVIYDEKRG
                     GLIYDGHTKLHKKPPEGECIGCEACVSICPTHIDIRKGMQLECINCLECADACSKVQS
                     KFNRPSLINWTSAKAIETRSKVHYLRFRTIAYFIVLLIALLALIIMGSKKESMLLNIN
                     RSSELYNISNVKGELVISNAYTFLFQNTDSKPHEYYFTANLEGINDGIEIIRPNKPFK
                     LKAGEQVKKIVVIRATKNLANNDKKDVIFPLHIKAYAKDNEKISVFRKSIFVYPKSTL
                     IKDKNELK"
     gene            25201..25833
                     /gene="cmeR"
                     /locus_tag="ACJFD7_000162"
     CDS             25201..25833
                     /gene="cmeR"
                     /locus_tag="ACJFD7_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     regulator CmeR"
                     /protein_id="HGG0859017.1"
                     /translation="MNSNRTPSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSG
                     GSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIENGTLKEILTSFGLAFIEI
                     FNQPEAVAFGKIIYSQVYDKDRHLANWIENNQQNFSYNILMDFFKQQNNSYMKKNAEK
                     LAVLFCTMLKEPYHHLNVLINARLKNKKEQKEHVEFVVNVFLNGINSSKA"
     gene            25928..27031
                     /gene="cmeA"
                     /locus_tag="ACJFD7_000163"
     CDS             25928..27031
                     /gene="cmeA"
                     /locus_tag="ACJFD7_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeA"
                     /protein_id="HGG0859018.1"
                     /translation="MKLFQKNTILALGVVLLLTACSKEEVPKIQMPPQPVTTMSAKSE
                     DLPLSFTYPAKLVSDYDVIIKPQVSGVIENKLFKAGDKVKKGQTLFIIEQDKFKASVD
                     SAYGQALMAKATFENASKDFNRSKALFSKSAISQKEYDSSLATFNNSKASLASARAQL
                     ANARIDLDHTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDK
                     LNLVRNTQSGKWDLDSIHANLNLNGETVQGKLYFIDSVIDANSGTVKAKAIFDNNNST
                     LLPGAFATITSEGFIQKNGFKVPQIAVKQNQNDVYVLLFKNGKVEKSSVHISYQNNEY
                     AIIDKGLQNGDKIILDNFKKIQVGSEVKEIGAQ"
     gene            27031..30153
                     /gene="cmeB"
                     /locus_tag="ACJFD7_000164"
     CDS             27031..30153
                     /gene="cmeB"
                     /locus_tag="ACJFD7_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HGG0859019.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGAIGLTNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSI
                     NLLTLFALILAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVL
                     VLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPF
                     KFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPNSLVPEED
                     QGLMISIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLKDWKDRNVSADEIAMELNKKFAFDRNASSIFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDEIQKDVNKLVTAANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDV
                     FNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQDTLKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSG
                     SAYQEVSSKGTASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLVGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKRGKVHE"
     gene            30146..31624
                     /gene="cmeC"
                     /locus_tag="ACJFD7_000165"
     CDS             30146..31624
                     /gene="cmeC"
                     /locus_tag="ACJFD7_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HGG0859020.1"
                     /translation="MNKIISISTIASFTLLISACSLSPNLNIPEANYSIDNKLGALSW
                     EKENNSSIAKNWWKDFDDENLNKVVDLALKNNNDLKLAFIHMEQAAAQLGIDFSSLLP
                     KFDGSASGSRAKTAINAPSNRTGEVSYGNDFKMGLNLSYEIDLWGKYRDTYRASKSGF
                     KASEYDYEAARLSVISNTVQTYFNLVNAYENENVLKETYESAKEIYRINDEKFQVGAV
                     GEYELAQARANLESMALQYNEAKLNKENYLKALKILTSNDLNDILYKNQSYQVFNLKE
                     FDIPTGISSTILLQRPDIGSFLEKLTQQNYLVGVARTTFLPSLSLTGLLGFESGDLDT
                     LVKGGSKTWNIGGNFTLPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLITAFGEIRYAL
                     VARKTIRLQYDNAQASEQSYKRIYEIAKERYDIGEMSLQDYLEARQNWLNAAVAFNNI
                     KYSYANSIVDVIKAFGGGFEQSEDTSKNIKEESKNLDMSFRE"
     gene            complement(31647..31898)
                     /gene="cmeU"
                     /locus_tag="ACJFD7_000166"
     CDS             complement(31647..31898)
                     /gene="cmeU"
                     /locus_tag="ACJFD7_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CmeU family protein"
                     /protein_id="HGG0859021.1"
                     /translation="MDKAKIVQNLNALFKQRAEFYSYFDENIAKINDTEVFDFKNAKN
                     LNPEEVYKQFYHFDYAIRKLLPAIYKAYEITDADLDKDF"
     gene            32026..33372
                     /gene="hemN"
                     /locus_tag="ACJFD7_000167"
     CDS             32026..33372
                     /gene="hemN"
                     /locus_tag="ACJFD7_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HGG0859022.1"
                     /translation="MNLFQNLALKYSHTMMEKSLQKGFNVELLKQPEEKIPKQDKSYM
                     LYAHVPFCHTFCPYCSFHKYYYDENLAKVYFQNLREEIKIMKNKGFDFTSMYVGGGTT
                     LIDEEELLKTLELCKKLFNIKEISCESDPNHIDPNKLSMFKGIIDRLSCGIQSFDDET
                     LKKVARYNKFGSSKELQEKISKALGILPIFSIDLIFNLPGQNEKQLLNDLEIAKNLAP
                     QQITTYPLMKSNLTKDNIAKSLGVSIKDNEFTYYQIIREFFKDYTQNNGWSFSLEKNK
                     LNDEYVSSHHEYLGVGSGAFSFLDGELLINAFNLNDYAKFIQEKQNANIAKACFDKKE
                     IIKYVFLTEIFSGKIEIDKFNKTLNCNLEKELFIELLGLKTSGAIIKDQNALIATEFG
                     QYLFVVLMKDFYTGMDLVRAVFRDDKRLKNKDYIDIMKENIDPLNSASMEFKAETN"
     gene            complement(33369..33821)
                     /gene="hemJ"
                     /locus_tag="ACJFD7_000168"
     CDS             complement(33369..33821)
                     /gene="hemJ"
                     /locus_tag="ACJFD7_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HGG0859023.1"
                     /translation="MTEWINDYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAEHKDNK
                     GFVEVVKIQERKLYYYIQTPAMIVTLITGSLMLHAHKEVLMVGAGFMHVKLTCVTLLI
                     IFHIHNYYCLKALANDTSTKSGKYFRIYNEFPTIMFIIIALMMVVRPF"
     gene            complement(33805..34275)
                     /gene="lspA"
                     /locus_tag="ACJFD7_000169"
     CDS             complement(33805..34275)
                     /gene="lspA"
                     /locus_tag="ACJFD7_000169"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HGG0859024.1"
                     /translation="MAKTFKFIFYFWGAFVLVFALDQWVKSLTLAGFRWQSEYLDLTY
                     ALNTGVAFSMLSFLEHNLKYLHLALIGVLFIYLFWQRTLLKTHSIAFGMMLGAGVSNL
                     LDRFIHGGVVDMFFWHKWFNFAIFNVADVMINISVALILIQEIFKKRKKDDRMD"
     gene            complement(34268..35605)
                     /gene="glmM"
                     /locus_tag="ACJFD7_000170"
     CDS             complement(34268..35605)
                     /gene="glmM"
                     /locus_tag="ACJFD7_000170"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HGG0859025.1"
                     /translation="MRLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSITNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYFDDKLIQASKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALYPVNLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALYLKEQGK
                     LQSSVVATIMSNGALKEFLNKHGIELDTCNVGDKYVLEKLKANGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLSKKKSASSILGQVKPYPQLLINLKIAEKKDLDKIKGLK
                     ELKKDLENKNINTLFRYSGTENLIRLLLEARDIKLLEKEMKNVVEFFKKALNG"
     gene            complement(35699..36724)
                     /locus_tag="ACJFD7_000171"
     CDS             complement(35699..36724)
                     /locus_tag="ACJFD7_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HGG0859026.1"
                     /translation="MKVKALLIASLVAFSSLNAASLIDEAKNSGLVALPKDQKGVDEI
                     LKQNGVKASEFTLEKAELGKKLYFEPRLSKSGIISCNTCHNVGLGGTDGVSTAIGHKW
                     TANPHHLNSPTVYNAVLNNTQFWDGRAGTLADQAKGPIQADPEMATPAKLAVEKISSL
                     PEYVSEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDKFLEGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDANGMVKTPTLRNVAETAP
                     YFHNGAIWNLKDAIKEMGSVQLGIKISDKEAKSIETFLKSLTGTKPAIVYPQLPISTE
                     KTPKPEL"
BASE COUNT        12948 a         5945 c         5175 g        12666 t
ORIGIN      
        1 aaacaggcta tcttatcaaa atgaatctaa atttagataa tacacaagta tttaaacttt
       61 cagaagctgt tgataaaatt tctttcatgg ggaatggtaa attttactac ggagataaaa
      121 ttttagattt gctatgataa aaattttaga acaaacaata aagtctttaa aattaaattt
      181 aaagccctat gacttaagta tgttgactag aaaaaaaagt tatatttgtg ctaaagatca
      241 aaataacatt ctttttatgt atacaggaaa aacaaaattt ttaatgaaag atgccttatt
      301 tttagaaaat ctagcacagc aaattaacat aaataacaaa tattttttta gtatggcttc
      361 tctttgctct aaagcaaaaa atcatctaga aatgaaagga tttaatatct atgttgctct
      421 gtgatattgg gaattcaaat gctaatttcc tagatgataa caaatatttt actcttagta
      481 tagatcagtt tttagaattt aaaaatgaac aaaaaatttt ttatatcaat gtcaatgaac
      541 atctcaaaga acatttaaaa aatcaaaaaa aatttatcaa tcttgaacct tattttttat
      601 ttgatacaat ttatcaagga ttaggaatcg atcgcatagc agcttgttat actattgaag
      661 atggagttgt tgtagatgca ggtagtgcta ttacaattga tattatttct aattctatac
      721 atcttggtgg ttttatcttg ccaggtattg caaattataa aaaaatttat agccatattt
      781 caccacgatt aaaaagtgaa tttaacactc aagttagtct tgatgcattc ccacaaaaaa
      841 ccatggatgc tttaagttat ggtgttttta aaggaattta cctactgata aaagatgccg
      901 ctcaaaataa aaagctttat ttcactggtg gagatgggca atttttagca aattatttcg
      961 atcacgcaat ttatgataaa cttttaatct ttcgaggaat gaaaaagatt ataaaagaaa
     1021 atcccaattt actttattaa aaatgttaca aaaattctca ttgatatcaa accttaatga
     1081 aatttaactt tttgtaaaac aaattcaatt aaacttctat ttagaaaaaa gtttattaaa
     1141 ataaaaaaag gaaaaacaat gagccaacaa gaatttgatg tgcttgtcat cggagctgga
     1201 atttcaggag cagcattatt ttacgagctt gcaagatata caaatattaa aaatattgct
     1261 ttgatagaaa aatataatac agctgcaaca ttaaattcta agggaacgag taattctcaa
     1321 accattcatt gtggagatat tgaaaccaat tatactttag aaaaagcgcg aaaagtaaaa
     1381 agaacagctg atatgatagt taaatatgga ctcatgcaaa atgcgcaaaa taatttcatg
     1441 ttttctcatc aaaaaatggc tctagctgtt ggagatatag aatgtgatta tatgaaaaaa
     1501 cgctatgaag aatttaaaga actttatcct tatataaaat ttttcgataa agcaaaaatc
     1561 aaacaaattg aacccaaggt tgttttagga gaagattgca atcaagatag acctgaaaat
     1621 atctgcgcca tgggtgttga aagcggcgag gtttttacaa ctgtagattt tgggaaaatg
     1681 agtataaatc taatagaaca agcccaaaaa caaaataaaa atactttcgt tgcctttaat
     1741 caagaaatta ttcacataga aaaaaaggat gatattttta tattaaaaac ctcaaatcat
     1801 caagaatacc atgccaaaag cgtagttgtc aatgctggag cgcactcttt atatttagca
     1861 cataaaatga acttaggtat ggataagtct tgttggcctg ttgcaggaag tttttattta
     1921 accaaacaaa aacttttaaa tggcaaggtt tatatggtgc aaaatcctaa acttccattt
     1981 gcagctcttc atggagatcc tgatttgctt gctgatatga acactcgctt tggacctact
     2041 gcacttgtta ttccaaaact agaacgttat catggtctaa aatcagttcc agaatttttt
     2101 gaagcactaa aacttgataa aactgtttta aaagtaactt ttaatatgtt taaagatgca
     2161 acaattagaa attacatctt ttataattat ctttttgaac taccttttat tgataaaagc
     2221 ttatttgtta aagatgccaa aaaaatagtc ccaagtctta aagcaagcga tatttattat
     2281 gcaaaaggtt ttggaggcgt aagaccacaa gttattgata aaactaaaga agaattaatg
     2341 ctaggtgaag caagtatcac agaaacccct ggtattattt tcaatatgac tccaagtcct
     2401 ggagcaacaa gttgtctagg aaatgctgaa agagatgcaa agcttgtatg taattaccta
     2461 ggaatggaat ttaacgaaga taaattttct tcagaattat tgtaatcatt ttgtttctat
     2521 ttttagctac aataatttca aaaggagttt accatgctta aaaaaacaaa aattgtagcc
     2581 acagtaggtc cagcaagtga aaaggaagaa attctacgcc aaatgattat caatggtgta
     2641 aatgttttcc gtttaaactt ttctcatgga acacatgagt atcataaaaa aaacttagat
     2701 accataagaa gagtagctaa agaattgcat actcgtattg gaattttaca agacattagt
     2761 ggtcctaaaa ttcgtacagg tgaacttaaa gaaccatttg aattaaaaaa gggtgataga
     2821 cttgattttt atcgtgaaac aattttaggg gagaagattg ctcaaaatca ttataaaatc
     2881 agtattaatc aaaaatctat tttagatatg ttaaaaattg atgaatatat ttatctatat
     2941 gatggatcaa ttcgtgctaa agtagaaaac atagatgatc aaaaaattga aaccattata
     3001 gaaaatgatg gttttttaaa ctcaaataaa ggtattaatt ttccgaatac taaaatcaat
     3061 attgatgtta ttacacaaaa agataaaaat gatttacttt ggggtataaa aaatgaagta
     3121 gattttttag caatatcttt cgtacaaaat gcacacgata ttgatgaagt tcgtgaaatt
     3181 ttagcacaaa ataacgcaaa aatatctatt tttgcaaaaa ttgaaaaatt tgatgcagta
     3241 gaaaatattg atgagattat taaatctagc gatggtataa tggttgcaag aggagactta
     3301 ggtattgagg taccttatta taaagttcct aatatccaaa aagaaatcat acaaaaagca
     3361 aacaatgcct ctaagcctgt tattactgcg actcagatgc ttttttcatt agccaaaagc
     3421 aaaaccgcca caagagctga aatttcagat gttgcaaatg ctgttttaga tggaacagat
     3481 gcagtaatgc taagtgaaga aagtgccgtt ggtatagatc ctgcaaacgc tgttgatata
     3541 atgtgccaaa ctataataga aacagaaaaa cgctatccat ataacaaatt taatgatttt
     3601 aatgatttag acaatacaga taaaatcatg cattcttcag ctcatcttgc aacagatctt
     3661 aacgctgatg ctattttttc tttaacaagt agcggaaaat ctgctattaa gattgcgaga
     3721 tatcgtccaa atatagaaat catagcagta gggcattctg aaaaaacctt aaactcttta
     3781 agtatagttt ggggagttaa tcctgcgatc ttggttaaca aaagtaatga acttacagaa
     3841 ttattaaaag actctgtaag atcaagtgtt gaaaaaggtt ttatggatga agataaatgc
     3901 tatcttctaa ctgcaggctt tccaacagga gtagaaggta ctagcaatct tatccgcatt
     3961 ctcaataaag agcaaattgc ttattatcta caataaaaca ttaaattcct ttgaaaataa
     4021 ggaatttaat gtccttataa attttttaag tcaaaagtcg atataaatta aagcctcaca
     4081 caaaggagca aatatgcaag tgaatacttt ttcaaatatc gctagcatgg cacaaacaca
     4141 agttagcaat aagaaggcag atgatgctaa ggaaaacaca aaagacaaaa atgttcaaag
     4201 tgctaattct agcaaggatg tagataaaaa tacccttgaa aaattaaatg cacttggtgg
     4261 aaaaggcatt acacaaattt acctagttca gtttcaacag caaacaatga atgctgtaat
     4321 aggttcgagc aatgcccaaa ctggactaga tagtctttta aatggtgcca atttagatac
     4381 tgcgaaatct atacttacaa atattgattt tgcatcctta ggctacagtg gcaaaaatcc
     4441 acttgatatg aatacagatg aacttcaaca acttgtaagt gaagatggtt tttttggagt
     4501 ggaaaataca gccaatcgca tcgcggattt tgttattaaa ggcggtggcg atgatgttga
     4561 aaaattaaaa aaaggtcttg aaggtatgaa aaaaggattt gagcaagcag aaaaaatgtg
     4621 gggtggagaa cttcctcaaa tcagtcaaga tacaatagat gcggcactta aaaaagttag
     4681 cgatcgcatc gatgaactag gcggaaaaac tctagatctt caagcttaac taaaaatgct
     4741 tagaaatttc taagcatttt tagttgttat taatatcaaa agtaaaaaat tcactcttaa
     4801 aattattagg taaagtttta tactgagata tcgcagcttc atagttcttt acttcttgat
     4861 acaacatacc aagagctgct ttactctctt tgttattttt atctgtaagt ttagaaagct
     4921 gcaaaagcgc tatagctgaa tttggattat ttgcacctac ggctgctacg gctgctaaaa
     4981 ataaagtttt agtatcttta gctccataat catcaatcaa agaattataa agcgcataag
     5041 cctcctcgta ttgctgtgca aaaatatcca aataagctaa agtttgtaaa ataccctcat
     5101 cttttgctcc tgaaacatta atcaactctt taaatttctg tctttctaaa tttaaaagcc
     5161 ctgcaatatg cattaaatta acataaaatt ccctagctat atttggccca ccaaaaacac
     5221 tacgataatc aagttttaaa tttttaaaat gaatttgagc attttgagca tattctttaa
     5281 tatttaaatt tgaatttaaa gaattaaaat acaaaatatt tgccaaaata tcttcaggca
     5341 actctgaacg caatttagca attttcacat ctacttgatt attaaggtta ttatttttag
     5401 caacaatagc ttcaaaaatc aaactcaaag gcgtatcttt ttttgtttca tctaaataag
     5461 gaagcataga aatataatta ttattaacta aaaataacat acttttttgc atattagctt
     5521 taaaattaga atcagcagct atattatcaa gaatttcatt gtaaagttta gttgtatcaa
     5581 tatcaattaa ttttgcacaa aacatagcaa aagcacctgc taagtaattt ttaggattaa
     5641 gatgatatga acttgaaaaa tgcttataag caagttcata attttgcatt tgggcataag
     5701 ttaaagccaa attataatgt aaaatactat gttctggata atccttgata agtttttgaa
     5761 attcttggtt agcaaggcgt aacttctgat ttaatgcata gttaataata ttggcaattt
     5821 ttacattggt agatgaaaga gccttgctta tattaagata aattcccaca tcagtactat
     5881 catcaacgaa atctgtaaca ttagcttttt taatatataa agcagcctgc ttactatcaa
     5941 aaacctgata aggtgcaaaa taaaaaagca aatcgaattg atctttttgt ttttttagca
     6001 aatcttttga aaaagaattt tgagcaactg ctatattaaa aagatcctta tttaaacgaa
     6061 cttgaatttt ataagtatct aaaatcttat atctatcttt atcgttatca taagaatttt
     6121 gcaagcgcgc taacatatct tgataatttc ctgttttaat atcaaccaat gttaaagccg
     6181 ccaaactctg attaaaatct ctttcaattt tcatcgctgt acttaaagcg actttagctt
     6241 tagcatattc tcctattcta gcgtataaaa gacctaaaga taaactagat tcaaaattgc
     6301 cttgagaatt taattgctgt atagccttgg aatcaaagtc catttttgca taaattttag
     6361 cagacaaata ctttgcaaca tcagaatacg gctccacatc tgttctttgt aacatttgta
     6421 aggcctcagg gtaatatcct ttgtaataat taatcaagct taaataataa tcatataatt
     6481 ttgattttcc ttcttttgga agatacactt gagctaaatc aatataatat ctaaattttt
     6541 ccttatcatt aagctttaaa gcacaaacag cagcattgat agcagctaca ctttgatttt
     6601 ctccattggc tatagctttc ttgaagcttt caaaagcttc ttggaattta ttctcattca
     6661 tttgagaaac gcctaaatta taattagata aagattcgtt atatacggca acttgctcat
     6721 aaacttttaa agcctgttca acctcaccct ttaaatataa agcatttgct ttttggatca
     6781 taccatcaat tctttgcata tcattgtatt tatatgattc atcaggcata acaacaggtt
     6841 gttctaaagg cttagaagct ataatatctg gtttaatttt tccttcacta aaagttaaat
     6901 aaaaaagtgt aaaaactaaa atacaaataa tccccaaaga taaacccaca agagacataa
     6961 acttacgatc tttataccaa ggcgtaggct cttgactttc aacttcttca aaagttgata
     7021 catcttcagg cgcactttct cttgtaaatt taaaaccact atcactattt tcttgaggta
     7081 attcttctgg caatgatgca aattcttcat cttctggagc ttgcccctct tgccccttaa
     7141 atccctctaa actctcatca agtcttggtt gatttaagcc atcttcgggt ttttctagta
     7201 ttatatcttc ttgttcagcc atctatactc tttaaaaata ttttttcaaa acatcaggaa
     7261 tatgaatttt tccttcttta tcttgataat tttccataat cgctaccaag gttcttccta
     7321 ctgccaaaga tgagccatta agagtgtgga cgagttcatt ttttccttgt tcgtttttat
     7381 agcgaatttt agcgcgtctt gcttgaaaat cacgacaatt tgaaaccgag ctgatctcac
     7441 gatatttatt ttgtcctgga agccacactt caagatctac agtttttgct gcactaaaac
     7501 ccaaatctcc agtgcaaagc atcaaatgtc tatgcgctaa acctaaagaa ctcagcaaat
     7561 cacttgcaca ctcaagcatt tcattaaaca cactatcact ttgctcaggt ttagtgatac
     7621 ttacaagctc tactttttca aactggtgtt gtcttataat accccttgta tcacgccctg
     7681 cactgcctgc ttcttttcta aaacaagcac tataacaagt catttttatc ggtaaagttt
     7741 cactcgctaa aatttctccg ctgtaaagat tggttactgg aatttcagaa gttgagatca
     7801 aatacaaatc ctcatcatct accttataca tatcttcttt aaattttggc aactgacccg
     7861 tcccaaacat agtagcacca tttaccaaaa aaggtacatt aacaaattca aatccacgac
     7921 ttctattaaa atctatcata taatttacca aagcacggct taataaagct ccttcatttt
     7981 taagcacaca aaaacgactt tgtgaaattt ttaccccacg cataaaatca agccaattta
     8041 aactctcgcc taattcaaaa tgttcttttg gagtaaaatc aaagctaggt ggatttaaaa
     8101 cttttttaag ctccacattt tcattttcat cttcacccac aggcacacat tcatcaggga
     8161 tatttgggat ggcatgagcg atttcctcaa gctcattttc taaagcattt actttagcgc
     8221 tttgctcatt aattttgctt ttattttcgc ttaattttgc ttttaaactt tctttatctt
     8281 cggctgtagc aagctcttta ctgaatttat tttgaaaagc ttgaaattct tccaaggcta
     8341 ttttttcttt ttttaaactt gcaaaaagtt cagcaagttt ttttaagata ttttcatcaa
     8401 cttttttatt ttttaacttt ttagccactt catcaaaatt attttgcaaa ttttttaaat
     8461 ctagcatttt ctactcctta aagtccgatt ttttcataaa ttttttgcat tttttcttgg
     8521 gcgatttttc ttgcttttgt cgcaccaaaa tccaaaattt ctttcaaatg cgaaggcttt
     8581 tctaaaagct cattatattt ttctcttgct tctttaaaat aagcatttac aagctcgttt
     8641 aaatatattt taaaatgtcc ataaccctca ccaccttttt catagcgtat ttgtaattct
     8701 ttttgccctg attcatctaa aaaaagcttt gcgattttaa aaatattgca gttttcatga
     8761 tcttttggat cttctaaagc ggtactatct gtaactatgg aagaaatttg tttttttaag
     8821 gttttttcac tgctaaaaat atctatagta ttttgataag atttactcat ttttgctcca
     8881 tcagtaccca caaccacagc tacttcttca ttaactctcg cttctggaag ggtaaaaatt
     8941 tcaccccatt cattattaat ttttaaagca atatcgcgtg cgatttcaac atgctggatt
     9001 tgatcttttc ctacagggac aattcgtgta tcaaaaagta aaatatctgc cgccattaaa
     9061 acaggataag aaaaaagccc atgtgaagca ctaagtccct tagcaacttt atccttgtaa
     9121 ctatgtgcac gctctaataa acccatagga gtaaattgcg ataaaatcca ataaagctcc
     9181 ataacttcct taacatcact ttgcaaccaa aaaacgcttt tttgaggatc tataccaagg
     9241 cttaaaaaag ccgcagcagc ttttaaggaa ttttgtttaa gtttttctcc atcttgagaa
     9301 gaagtcatgg catgataatt agcaataaac ataaacattt ggcttttttc ttgtgcatct
     9361 accatttgct taatcgcacc aaaataatta cctatatgca aatcgccact tggctgaagg
     9421 cctgttaata ctctcatttt atcacctttt taatctcgct taaaagctca tctatatttt
     9481 tattttctat atttaaaata aaatttgcct tttgttcata cttgcttaaa cgctcattat
     9541 ataatttttt tgctttaatt tcatcataaa ataaaggtct tttagaaatt tcatctttgt
     9601 ctaaacgctt ttttaaatat tcaaaatctg cttttaaata aatacaaaaa cctgcttttt
     9661 ctaaatctga aacattaaca aaacccccac ctgtagcaat acaagctttc tcacaagaac
     9721 taaaaaaatc agccattttt tgctcttgtt ctctaaaaaa attttcccct ttttgttcaa
     9781 aaatttcact gactttttga ttaaattttt gttctattaa aaaatcacta tctaaaaaaa
     9841 caagatctaa atccttagct aaagctcttg ctaaagtgct ttttccagaa cccataaatc
     9901 ctataaaaac gatattttta gctttcatca ttttctttac tgcccttttt acgcgaagca
     9961 atcactaaag gcacaccttc aaaattaaat tcttttctga tttgattttg taaataacgc
    10021 ttatagctaa aatgcaaggc cttaggacga ttcataataa gtgcaatttt tggcggtgct
    10081 aagtcatatt gtactgcata ataaatttta accaatttcc cataatcatg cggcaaagga
    10141 tgtgctcttg tggcattttc tatcaaggta ttaagcttag aagtttggat tttttgagtg
    10201 aaattttcaa aaatttgcaa aattttatcg agtaaaacat gcaccctttt tccacttaaa
    10261 gctgatacgc taatcacggg tgcgtaagct agaaatttaa aacgatcaag acgcaattct
    10321 tttacagtct tatcaaaatc catctcactt ttatcccatt tatttaaaac aataatcaca
    10381 cccaaataat gcttagccac aagcccagca atgcgttcat caagctcgtt aaagccctca
    10441 tgcgcatcta aaaccaaaag tgctatttga gaatgagata aaattttttc cgtgcgattt
    10501 agagcaaagc gttcgagtcc ttgaatttta cccctttttc taatacctgc agtatcaaca
    10561 aattctatca ctttatcttt atgaactaca ctttcattaa caggatctat agtagttcct
    10621 gcaatagaac ttacaacact gcgttcttgt ttaaccaaag catttaaaag acttgatttt
    10681 ccaacattta cacgccctac aatacccact ctgatatgat tttgatcgac ttctttaaat
    10741 tgaaattctt ttccttcttc ataatactct aaaaaatctt ctaaattttc ttcttcatcg
    10801 gggattaaaa actcttcatg taaaaatttt tcaagccatt cataaagttc atctaagcct
    10861 acattatggg ttactgaaag attaaagatt tcctttacgc caaaatttgc aaactcccaa
    10921 gccctttctt catctttttt attatctact ttattaatca ctaaggctat aggttttcca
    10981 agttttttta aagaataaaa aaactgtcta tcctcatcat caggcgctaa tttcccatca
    11041 actagataaa gtatgatatc gctttcttta gctactttta aagtgttttt tttcacattt
    11101 ttaaaaagtt catcactttc atcaagcccc ccactatcaa taagcatggc tttttttgaa
    11161 tgaatatgaa tttgcgtttt atttgtatct ctagttgtgc ctgaaatatc acttgtaata
    11221 gctattcttt gtcttgccat tctattaaaa aggcttgatt ttcccacatt tggcttacct
    11281 ataagtataa tgctttgcat ttttttccta gaaaattata tttttaaaat tatataaaat
    11341 ttggcttaat attaagcaaa aaaagactag aattaaccca gattttagtc aaggaaaaaa
    11401 aatggtaaaa gtaatcaagc ataatttagg aatttatttc atgattttag catgtttgga
    11461 ttttgcactt atgggagctt gtgcaaaaat tcttagcaag gaaatgagtt ctatagaaat
    11521 tatgtttttt agaaatatca taggaatttt tttcatagcc tatcttttaa aacgatctaa
    11581 ggcacataaa gaagggggat atttttggct cttggtattt cgtggagtag taggcacgct
    11641 ttcactatat atgtttttct ataatgtttc aaatattaca ctaggtggag cttttgcttt
    11701 tcaaaaaact gctcctattt ttattacttt aatagctttt gttgttttta aagaaaatat
    11761 tggcatcaaa ggctggatag gaattttaat agcatttggt ggagtacttt taatcgctca
    11821 gccttgggct cataatttaa atcattcagg ctttgattta aaaaattcag ttataggtat
    11881 cacgagtgga tttttagccg ctttagctct tacaagtgta agagaactta gaaaatctta
    11941 cactacagaa caaattgcct tttcttttat ccttttagga accttaatgc ctttaatttc
    12001 tatgatcagt gctgaatttt ttgaaccaca gcatcttgat tctttacatt tagatttcat
    12061 tctagcgcct tttgtgatgc caagtcttgc agcttggctt atcattgcca ttatgggaac
    12121 tttaggcacc atttatcaaa ttcatgtcac taaagcttat ggtatcgcta aacaagcagg
    12181 agtggttgcc ggagttagtt atcttgatgt agtatttagt atgatagttg ggataatttt
    12241 gggagataat ttaccaagta ctatggtttt tttaggtata ataggcatta tttttggtgg
    12301 attaatttta gttaagaaca aaggaaaaaa atgaaaaaaa tgatactcat tgctggtcct
    12361 tgcgtgatag aaagcaaaga tttgattttt aaagttgctg aacagttaaa aaattttaat
    12421 gaaaatccaa atatagaatt ttatttcaaa tcaagttttg ataaggccaa tcgcacaagt
    12481 attaattctt ttcgaggtcc tggtcttgaa gaaggattaa aaattttaca aagcgtaaaa
    12541 gatgaatttg gtatgaaaat cttaaccgat atacacgaaa gcaatcaagc aaaccctgta
    12601 agtgaagtag ctgatgtctt gcaaattcct gcttttttat gtcgtcaaac cgatttactt
    12661 gtagctgcag caaaaactaa ggcaaaagtt aatatcaaaa aaggacaatt tttaaaccca
    12721 agcgatatca aatacagcgt taaaaaagtt ctacaaaccc gtggtataga agatgaaggc
    12781 tatgaagctg ctcaaaaaaa tggtgttttt gtagctgaaa gaggagctag ctttggctat
    12841 ggaaatttag tagtagatat gcgttcttta gttatcatgc gtgaatttgc tccagttatt
    12901 tttgatgcta cccatagtgt acaaatgcca ggggctgcag gtggaagtag cggagggaaa
    12961 agcgaatttg tagaaccttt agcaagagcg gcagcagccg taggcataga tggctttttc
    13021 tttgaaacac atattaatcc ttacgaggct ttatgcgatg gacccaatat gcttaatctt
    13081 acacgcctta aaaattgcgt taatacatta ctagaaatac aaaatatcat aaaggaaaac
    13141 aaatgaatat tattgaagga aaattaaatt tagactcaaa tacaaaaatt gctatcatta
    13201 atgcaagatt taatcatatc atcacagatc gccttgtaga aggagcaaaa gatgcttttt
    13261 taagacacgg aggcaaagag gaaaatctaa accttatact tgttcctggt gcttttgagc
    13321 ttccgtatgc attaaaaaaa gctatagaaa gcaaaaaatt tgatgcaatt tgttgcgtag
    13381 gtgcagtaat tcgtggctca actccgcatt ttgactatgt ttcagcagaa accaccaaag
    13441 gcatagccaa tgtgagttta aatcataata tccctgtaag ctttggtgtt ttaactacag
    13501 atacaataga acaagccata gaaagagctg gaagcaaggc aggtaataaa ggctttgaag
    13561 ctatgacaac tgtaatcgag atgttaaatt taagcaagga gctttaatgg caacgcgtca
    13621 tcaagttcgc caaagcgtca tctccttact ttatgctttt gaattaaatt ctcaaaacaa
    13681 cgtttttgta gatgaaattt tagatgaaaa aaaaatacgc aatgaacaaa aaaattttac
    13741 tttaaattta tatcatggaa ttttagataa tttaaacaat attgatgaaa ccttaaattc
    13801 atttctaaat gataatcaaa ttacagcttt aggacatata gaaagagcta tactaagact
    13861 tggagcttat gagttacttt ttaccgatac tcctagcgcc attgttatca atgaggctat
    13921 agaacttgcc aaagaacttg ccaatgacaa ttctccaaaa tttataaatg gagttttaga
    13981 tgccttaata aaggctaaaa aatgaagctt tgtgtcgcac ttgatctttc tacaaaagaa
    14041 gaatgcttgc aacttgccaa aaaattaaaa aatttagaca tatggttaaa agtaggttta
    14101 agagcatatt taagagatgg ctttaaattc atagaagaac ttaaaaaagt tgatgatttt
    14161 aaaatatttc ttgatcttaa aattcatgat attcccaaca ctatggcaga tgcttgcgaa
    14221 gaaatatcaa aacttggtgt tgatatgatc aatatccacg caagtgctgg aaaaatagcc
    14281 atgcaagaag ttatgacacg gcttagcaaa ttttcaaaaa gacctttagt tttagcagtt
    14341 tctgctctta cgagttttga tgaagaaaat ttctttagta tttatagaca aaaaatcgaa
    14401 gaagctgtaa ttaatttttc aaaaatatcc tatgaaaatg gacttgatgg tatggtatgc
    14461 tctgtttttg aaagtaaaaa aattaaagag cacacaagtt caaatttctt aacccttact
    14521 cctggaattc gtccttttgg agaaacaagt gatgatcaaa aacgtgttgc taatcttgca
    14581 atggctagag aaaatttgag tgattatatc gttgtgggaa ggcctatata taaaaatgaa
    14641 aatcctaggg ctgtatgtga aaaaatttta aacaaaatac acagaaaaaa tataagcgaa
    14701 aacgatatag agcaaaatta tgaagtaatt cagcaaaaag aatgggatat gtgtaatcac
    14761 tttgaagaat ggattaaaac tcagcctgat aaagaacatg ctttaaaaga attttatgct
    14821 aagtgtggga taaaatattg aattatcaac aattagaatg cgattacttt aatctttaca
    14881 atcagtttct tagcgtggat tttcaaattt cattatttga aaaagatcat aaaggtttaa
    14941 ttaaagattt tatatttttt tattatcaaa ttttaaaaca aaaagacttg agctacttgc
    15001 ttgaggtaag aaataaaatt tccctgaaag tttataatta tatgcaagag cactccactt
    15061 ctccaaaaga tttaagtctt atttgtctaa gagaaaataa acatattgaa ttttttcaaa
    15121 tattttacaa ggctctcgct tattttgtag cctttagaaa aaaacttgat ggagaacaaa
    15181 aaattaaaaa tttgatttca aatatcaatg actgttttgg ctatcatttc ttgaattctg
    15241 actttaacaa tcttcaaaat tttcaaaaaa gcgatttgtt caccttgcct gaaaaacatc
    15301 ttaaatattt tcacttcgcc atgattcatc tttgtttcat ggttttaaat cctttaaatt
    15361 ttaaagactc taatcggcat cttgataaag cgattaatta tcttgtcgat ggaacttttg
    15421 aaatttatga gctcatcttt aaagaatatt ttttattgtt ttcaaaagat aaagagctca
    15481 aggatgaact tagaaaatta aaaaaattag aatttaaaat tctaatgcaa gaaacttcaa
    15541 aaattaaact acttaatcac tataaagaat tttgcgaaga aatattctac aatatagaac
    15601 ttgaaaaaat cacacaaaat taatcctgta ttaacattgt tatagtttaa taataaaaat
    15661 ttttaacaag gaaaaattat gattataact cctgagaatt tatataaaaa aagaagagat
    15721 tttttaaaac ttggagcggg tgctttaata agttcaagcg tgcttgcttc taaactatct
    15781 gctttaaatt tcacaagcga tactaatcca aacaaacttg aaatcagcga tgaagaactg
    15841 gctacaaatt atgtcaattt ttatgaattt tcaacagata aaagaaaggc tgtatcattg
    15901 gcacaaaatt tcaatactca aaattggaaa atcgatatca gtggagaaat agaaaaacct
    15961 ttaactttaa gcatggaaga tattttaaaa tttccactag aagaaagaat ttatcgtttt
    16021 cgctgtgttg aaacttggtc tatggtggta ccttgggtag gctttgaatt gcgtcgtttg
    16081 attgaaatgg caaaacctac aagcgaggca aaatttgtta aatttaccac tcttttagat
    16141 aagagccaat ttcccgatca agacgcttta tttccaacta tagactatcc ttatgtagaa
    16201 ggacttcgca tggatgaagc tatgcatcct cttaccttgc ttgcagtagg aatgtataaa
    16261 aaagccttaa agcctcaaaa tggcgctcca atacgcctta ttgttccttg gaaatatggc
    16321 tttaaaagta ttaaatccat agttaaaata gaatttacca aagaacagcc taaatccact
    16381 tgggaaagtt acgctccaag tgaatatggt ttttatgcta atgtcaatcc taatgtttct
    16441 catcctagat ggtctcaagc taacgagagg gctttaggag acttctttac caaacctact
    16501 ttaatgttta atggatatga aaaagaagtg gcaagtttat ataaaaacat ggacttgaaa
    16561 gtgaattttt aatgcagaca aaatacttta aatttcttgc ttattttagc tttatcataa
    16621 gtttaatcta tggcttttat catatcataa aagcctttga ttttgtaaaa gaagcctata
    16681 tttacactgg aatatttgct ttaatctttt taaatttaag tcttttattt tctttaccta
    16741 aatttaaaaa aacaaaaaat tatcctaaaa ttttaggtat ttttgcagct ttttgggcga
    16801 ttttgcactt tttaaattat tttatttttg atagaaatgc tcaaatttta aggcttttcg
    16861 atgatatttc acatcgttta ttagaagcaa gtggatttat cgcattttta atcatatttt
    16921 taatgctttt aagttctttt aaaatcttta aaaaacttag taaaatcaga aaactaggat
    16981 atttatgctt agttttggca agttatcatt attttttaac cccaaaaatt cctatgtttt
    17041 gggaatggag tgctttaatt atagctttgt tttattttat agttcgctat acaaaaacat
    17101 taaaaaagtt aaaatccaac aatcttactt ttatcaaaac ttgaatttaa ttctttttgt
    17161 atgctttcta taaaatcttg cattttaaaa accccatctt ttgatacagc tactttcaaa
    17221 gctgtattct tcaccaccat taaaatttgt gctccactta attcataatt tgataaaata
    17281 tttatatcaa aatctttttc aaataatgct tttttaggta gaaatttttc ccaaatttta
    17341 agcctatctt taaaatcagg ttttttaaat tctatcttat aatcaaatct tcttgaaaat
    17401 gcactatcta agctttctaa aaaatttgtc gtagcgataa tcacaccact aaaacgctca
    17461 atttgctcta aaaatatatt ttgcatttga ttatgcattt tatcgctacc actacttcca
    17521 tctacacgcg tacttaaaaa ctgatcagct tcattgagaa gtaaaatagg actttgttta
    17581 caagtttgca cgatattttt ataagtatca aaaatttttc ttacattttg ctcactctct
    17641 ccaacccatt tgctcaaaat tttagaacag tcaaaactaa gaacagattt tttcattgat
    17701 ttagccatag ctaaagctga catagttttt ccagtaccag caggaccata aaaaataatt
    17761 ttagcttcta tatttttatt actctttata ccccaagaat gaagtctttc taggactttt
    17821 ttatcttgtt gttttaaaat attttctaaa agctcttttg tattttcagg cataataata
    17881 tcattgatgt cagtgcttgg ttctataagc tcgaaaatat cttgatcttt taaaacactt
    17941 tcaattttga tttttttact ttgttttggt tcaaaattta taattctttg taaaatttca
    18001 tcgataataa aaaaactttt agaaatatct ccaaaagcat ttaaatattc atcatactcg
    18061 attaagttta aaagaggagc attttcttgt aatagttttt tatttttatg cctttctaaa
    18121 tcattttcac tgattaaaga aagtaaagaa ttcatttctc tagaaatcga actttcatta
    18181 cttaaggcgt attcttcttt taaaagtgct agaaaaataa tttgttcttt atgttcaaga
    18241 ttgtattctt taaaaatatc agccaataca ttataaaatt tacttttttt tagtctttct
    18301 ttgatatgtt tttcataaag tttaatttga ttttttattt cactattata agcacttttt
    18361 tgtataaaac ttaatctttc gtataattga atacgcgcaa attcatcttt taaatattct
    18421 aaataatctg cataagcctc ttgtttctca aaatttaaac gaggttttgc ttctaaaaat
    18481 tctaaaaaat attcacttag actaagctca ctttgcaata aggcaagagt taatgtttga
    18541 gttttattat tttctaaact tttaaaaaaa ctcgaatttt gatttacaaa acctctttcg
    18601 ataagttttt ttaaatcctc caaagcatca agataaagat acttatcatt tccaaaaatt
    18661 gtcgataata aagtaaaggc attgatagaa gaaatagaaa cgacataatt tctacaaagc
    18721 tctctaagaa tcaaagcctc atttttagca cacttaagct ctttataaat ttgagtatct
    18781 tctatatttt tcaaacttaa aaaatttttt aatttttcca ttatttttta aattccttaa
    18841 gctcatcttc gttaaattct acgcaaatat tttcatctaa aaaatgacct tcaaaaggta
    18901 gataacaaat ttttagtttt ccattattaa gcaaaaaatt attattaaat tgtaaatttt
    18961 gcagatcttc aaaacactca tcacatgtat ttttaagctt ctcatgtaaa agattttgaa
    19021 atttttgatt ttcagtatta tacaaatcat ttagttttac aaacgcgtga gcattaatat
    19081 cataaacaaa attatttaac tctaaaatag cacgactcat accatcttca taaaaataat
    19141 accattcttc aaaactaatt tttccatctt gtaaaaaaat aggtttttgg cgaatttgtt
    19201 caaaactaaa tacaccctta tgaacaggat gaaattcttt aaaatcatcc ttaaaaccta
    19261 taaaatcaag actacgcttt atgcgaatac catcttgcgt ttcaacaagt tctaaagtag
    19321 ttgttcctaa attttctcct tgaaaatttt tattatcata tgtaagcatt ttagaagaat
    19381 tgattttata ttttttatgc tcatcctgcc aaaaatcatt tgtcttaaag agtggaatct
    19441 ctaaatttcc atttatatca tcaacaatta aaaaactaga acttgtttga tttttatccc
    19501 tgtcaaaaag tggagtcata ggtgtattat cataaactat ggcaaaaatt tctttatcct
    19561 gcaaatgata aaaatacaat tcacctttat aaacttgcgc taaaactaga tttacaaagc
    19621 aaaataccag taaaaaaaat ttcaaactct atccttcaat tttgaatatg cgttaagata
    19681 attttagtat gtgaaatttt atcaaaaaaa cttactttat tatcacaaac ataataaaaa
    19741 atttcataat tttttgcttt taaattttgt tcaaaaccac aatcagtttt ttctaaattt
    19801 ctaccttgcc ataaaggatt tgcctttaaa atatcattta aaatatcatc ataatataca
    19861 tttttaaaaa atttttgatt aaacacttgt ttatcataac acactgcatt gatgcaaatt
    19921 ttatctttga ttttgagttc aaaaaaagct tgccctagtt tataaacttc taaatttaaa
    19981 gcattatttt ctttttttaa aaaagctgca tcattgattt ttatcatagg agaagcaatc
    20041 aaaaccatca agctttgact tgaaaaattt tgatttttcg cactacaagc gcaaagaaaa
    20101 aaaataaaac atagagctaa acaatgtttc aaatttgacc ttatttgaga tttttaaaac
    20161 tgacatttaa ctctaaatca agctctttta caagcttcat cacagcttgt aaatcatcga
    20221 tttgttttgc tacaacacga atttcttcac cacgaatcga agagttaact ttaagcttgc
    20281 tatctttgat agctttattg atttttttag cattttcact atcaatagca tcgtttgctt
    20341 tcaaatttaa acgaaacatt gctccacttt cacgagaaag ctctttaata gcattaggat
    20401 taattcctct tttgataagt ttagaaatca ctatatcttt taaaacatca agctttcctt
    20461 cactagaaga actgagttta aaaatactct ctttttcgct taaatcaatc tcacacttaa
    20521 ttccttttaa gtcataacga ctatcaagtt cttttttagc ttgttcaaaa gcatttttta
    20581 actcttgttt atctaaagct gctgaaatat caaaactatg ttcacttgcc attttctatc
    20641 cattctttta aattattata aactatatcc attaaagcat ttaaagcctc cttgctcgcc
    20701 cacgcaacat gaggagtgat aataagattt tctttatttt taatgcttaa aagtggatga
    20761 tttttcatca taggttcaat ttctaaaaca tcaagcccta cacgaatatt tttttcatct
    20821 atgattttag ctaaatcatt ttcattgaca atcccacctc ttcctacatt aatcaaaatc
    20881 gcattatctt ttaaaagctt taattcttca aaggcgagta aatttttggt tttttcattt
    20941 aaaggtgcgt ggatacttat aatatcgcaa gtttttaata aatcttttaa ttccaaatgt
    21001 acaaaatctg cgtttttatt agctccactc gtagaataat aataaatttc ggctccaaaa
    21061 gcctttgaaa tttttgccac ttctttacct atggttccta aacctataat accatgtttt
    21121 ttaccactta aggtgtttaa aattctacta taatctgtaa aaataggact ttcacaccat
    21181 ttaccctctt tgctccattt gtcataataa agcacttgat ttaaaaaagc aaacataaat
    21241 gcaaaagtat gttgcaccac actcatagta gaatacccag cagcattttt tacaataata
    21301 cctttttctt tagcatactc aatatcgata ttattaaccc ctgtagcagt ttccaaaatg
    21361 agttttaaat ttttacaagc atcaatcaca tctttatcaa ttacaacctt gtttgtcatg
    21421 gcgacattag catcttttaa acgctctatg gtttgctctt tatttgttgt ggtataaatt
    21481 tgcaaagaac caaatttttc aaaaacactt aaatcataat cccctaaagt tgccgcatct
    21541 aaacaaacaa ttttcatttc taatccttta taatatgtcc tacaaattta gaataattat
    21601 caagcacaag tcctcctttt ctaaatccta agccacaccc ttcataagca aagaaaacac
    21661 ctgcttgata gtattcgttt tcacatgaat taaactctac atattcttga taaatagcct
    21721 tattattccc ataaggacct acattctcat gcaaagtttt tccatcttta attatactga
    21781 tatttgcgcc ttctctacca aaaacaggtt ttttaacata gtttttaccc tctaaaggag
    21841 tatcttttgt ttctaaaagt aatggatgat ttggataaag ttcccataga atttttaaaa
    21901 ttcccttaga ttgaaataaa agcgtataag caggatttaa aataattgct ctttgattac
    21961 gcatgatttg agttaaaagc atggcaagtt caccctcttc tatagctata tcttcccaag
    22021 gaataagctt aaaccaatac tcataatttt cgccctcttt aaaaataccc tcttcgctaa
    22081 attccacctc atccacaaag gaaaaattag tttgaaaacc tgcttcattg gctatatgag
    22141 aaagtaattt tgtagtgatt tcttcttctt tacttcctgc aacacttgaa aaaagaattt
    22201 tccatccttg ataatgctct tcaaaccctt caacactttc atcaagagta ataagtcttt
    22261 taaaattatc catcaaactt tcataaatac tattaaactg tgcgctttca tccattccat
    22321 tttgttttaa aagtgcccat tgtaaaatcg cactttcaaa aagagcagta ggggtatcag
    22381 cattaaattc tataagtttt ataggcttgc catcaagtcc acccgctaaa tcaaaacgcc
    22441 catataaatg ccaatgaacc tcattttccc aactcatctt aattgcatca ataagattaa
    22501 aaggaattcc aagctcatca aaacgatcat tatcaatcac ttcttgtgct gcagcaataa
    22561 acatatcata aagctcattc accgcttcat aataagcatt agcttcactt tccttaacac
    22621 aaactaactt attgctaata taatcacttc catcttcatc tgtatgccaa gaaaaaccta
    22681 tattttctaa ataatctttt tgaagtttgt ctacttgtaa taattgcatt atttatcctt
    22741 aagaaccaaa agaagaacta gaacttacag ctttagagcc tccgccaaaa aagcctgatt
    22801 ttttagcact tgaagcagag cttgttgtgc ctgctttatt aaaactatta acactccttt
    22861 gataagcact ttgatttgaa aaagcaccgc gttgttggtt ggcaaaattt tgattattga
    22921 aaagttttga acctatccaa cttcctaaaa tagcacctgc agcacttgcg agtaaagttt
    22981 cccctaaact caatccccca ctactgattt gtccattgtc tttagttaaa tttgaagttc
    23041 cattatcaat tttagctgct tcttctttaa tcaaagcatc catttcttct ttggataaaa
    23101 ttctttctgt gccattaaga tcttttaaaa ctacccttgt ttcatcactt ggatattgat
    23161 ctttgatttt atactgccct ggagctgttt cttcgataat tacaaaagct ccttgagcat
    23221 tagctgcttg atttaaagta tctgcattgt cattattact tccacaacct gctaaagcac
    23281 ctccagcaac agctgctaaa ccacctatca taccaatttg aatgattttt ttgatttttt
    23341 tcataagttt atcctaaaaa cagaaaattt aaattagaaa ttttaacaaa aaataataaa
    23401 tactttttaa tttaatacca aatgaagttt gtagatataa aaaaagccct ttcgggcttt
    23461 tgggttagag tcttgactcg tagcgtctaa gcatataaag tcttttaagc atttttttgc
    23521 gtgctgaaat tttttgtttt ttgcgaattt cagtcatagg ctcaaaaaat cttcttgctc
    23581 ttacttcagt cacaactaga tttctatcta cttgtttttt gaatttacga tatgcttcat
    23641 caaaagactc gttaggatgc accttgattc ctggcacagt cctcaccacc tttctgtgta
    23701 aatttttgtt gtgaaatata attataaaac acttcttatt aattctaact tagaaagcat
    23761 ttaaaaattg ttttagtttt tatcggttat aatccttaat tacaaagtac taaaaaatta
    23821 taatttaagg tctaaaaatg caaggacaca ttacaaacta tacaaaaaaa cgatattttg
    23881 tatatttaat tgcaagtatt atcatatttg ccctaccttt cataagaatt aatgagaatc
    23941 atttttttct tttaagtttt gatcattcta aattaaacct attttttatt tctttttcaa
    24001 cacaagaatt ttatctcatg ccttttgttc ttatatttct ttttttattt atttttttta
    24061 ttacaacttt aggtggaaga atttggtgtg cttggagttg tccacaaacg atttttagag
    24121 ttatatatag agatatcata caaactaaat ttcttaaaat tcgcaaaaat atcaataaca
    24181 aacaaaaaga atatgaggga caatatttta aaaaatttct tggagtaata attttttatt
    24241 ttatatcttt agttgctgtt agtaatttac tttggtactt tattcctcct gaagattttt
    24301 tcaattatat tcaaaatcct ggcgagcatc tacttttact tggaatttta ttttgtgcta
    24361 gcttactttt tactttggat attacctatt tacaagaaaa attttgtgtt tatgtctgtc
    24421 cttatgcaag aatacaatct gtaatgttcg atcatgatac aatgcaagtg atctacgatg
    24481 aaaaacgcgg gggcttgatc tatgatggac acaccaaact tcataaaaaa ccgcctgagg
    24541 gagaatgcat aggttgcgaa gcctgtgtta gcatctgtcc aactcatatt gacatacgca
    24601 aaggaatgca acttgaatgt attaattgtc ttgaatgtgc cgatgcttgc tctaaggttc
    24661 aaagcaaatt taatcgtcca agtttgatca attggacaag tgcaaaagct attgaaacgc
    24721 gttctaaggt tcattattta agatttagaa cgatagcata ttttatagtt cttctaattg
    24781 ctttactggc tttaatcatc atgggaagca aaaaagaaag catgctttta aatatcaatc
    24841 gtagtagtga attatataat atttcaaatg ttaaaggtga attagtcatt tcaaatgctt
    24901 ataccttttt gtttcaaaat acagattcta aacctcatga atattatttt acagcaaatt
    24961 tagaaggaat aaatgatgga attgaaatca taagaccaaa caaacctttt aaattaaaag
    25021 caggagaaca agtcaaaaaa atagttgtta tcagggctac aaaaaattta gcaaataatg
    25081 ataaaaaaga cgtaatcttt cctttacata taaaagctta cgcaaaggat aatgaaaaaa
    25141 tttctgtttt tagaaaaagt atatttgtat accctaaaag cactcttata aaggataaaa
    25201 atgaactcaa atagaacacc atcacaaaaa gttttagcca gacaagaaaa aatcaaagca
    25261 gtggccttag agcttttttt aacaaaagga taccaagaaa caagtttgag tgatattatt
    25321 aaattatctg gaggatctta ttctaatatt tatgatggtt ttaaaagtaa agaagggcta
    25381 ttctttgaaa ttttagatga catatgtaaa aaacactttc atcttattta ttccaaaaca
    25441 caagaaattg aaaatggcac tttaaaagaa attttaactt cttttggttt agcttttata
    25501 gaaattttca atcaaccaga agctgtagct tttggtaaaa ttatctattc tcaagtttat
    25561 gacaaagata gacatcttgc caattggata gaaaacaatc aacaaaattt ttcctataac
    25621 atacttatgg attttttcaa gcaacaaaat aattcttata tgaaaaaaaa tgcagaaaaa
    25681 cttgctgttc ttttttgcac tatgttaaaa gaaccttatc atcatcttaa tgttttaatt
    25741 aatgctcgtt taaaaaataa aaaagaacaa aaagaacatg ttgaatttgt tgtaaatgtt
    25801 tttctaaatg gaatcaatag ctccaaagct taaaaaataa ttttattaac caaaattaag
    25861 atataattag ccaaaaattt ttgtaataaa aattacaatt tttaatttaa tttttcaagg
    25921 caaaaccatg aaattatttc aaaaaaatac tattttagct ttaggtgttg tgcttttact
    25981 cactgcttgc agcaaagaag aagtaccaaa aatacaaatg ccgcctcaac ctgtaacaac
    26041 catgagtgct aaatctgaag atttaccact tagttttact taccctgcta aacttgtcag
    26101 tgattatgat gtcattataa aacctcaagt tagtggcgta atagaaaata aactttttaa
    26161 agctggagat aaagtaaaaa aaggacaaac attatttatt atagaacaag ataaatttaa
    26221 agctagtgtt gattcggctt acggacaagc tttgatggct aaggcaactt tcgaaaatgc
    26281 aagcaaggat tttaatcgtt ctaaagctct ttttagtaaa agtgcaatct ctcaaaagga
    26341 atacgactct tctcttgcta catttaacaa ttcaaaagct agtctagcaa gtgctagagc
    26401 acagcttgca aatgcaagaa ttgatctaga tcataccgaa ataaaagctc cttttgatgg
    26461 tactatagga gatgctttag ttaatatagg agattatgta agtgcttcaa caactgaact
    26521 agttagagtt acaaatttaa atcctattta cgcagatttc tttatttcag atacagataa
    26581 actaaattta gtccgcaata ctcaaagtgg aaaatgggat ttagacagca ttcatgcaaa
    26641 tttaaatctt aatggagaaa ccgttcaagg caaactttat tttattgatt ctgttataga
    26701 tgctaatagt ggaacagtaa aagccaaagc tatatttgac aacaacaact caacactttt
    26761 accaggtgct tttgcaacaa ttacttcaga aggttttata caaaaaaatg gctttaaagt
    26821 gcctcaaata gctgttaaac aaaatcaaaa tgatgtttat gttcttcttt ttaaaaatgg
    26881 aaaagtagaa aaatcttctg tacatataag ctaccaaaac aatgaatatg ccattattga
    26941 caaaggattg caaaatggcg ataaaatcat tttagataac tttaaaaaaa ttcaagttgg
    27001 tagcgaagtt aaagaaattg gagcacaata atgttttcta aattttttat cgaaagacct
    27061 gtttttgctt cagttgttgc aattatcatt tctttagctg gagccatagg tcttacaaat
    27121 ttacctatag aacaatatcc ttctttaacc cctcctacag ttaaagtaag tgcaacttac
    27181 acaggagctg atgcacaaac cattgcttca acagttgcaa gtcctatcga agatgcaatc
    27241 aatggcgcag ataatatgat ttacatggat tcaacttcaa gttcttcagg aactatgagt
    27301 ttgactgttt attttgatat cggtacagat cctgatcaag ccaccataga tgttaataat
    27361 agaatttcag ccgcaactgc aaaaatgcca gatgcagtta aaaaacttgg agtaacagtt
    27421 agaaaaactt cctcaacaac acttgctgca atttctatgt attcaagtga tggctcaatg
    27481 agtgcagtag atgtatataa ctatatcact ttaaatgttt tagatgagtt aaaaagggtt
    27541 ccaggagttg gagatgcaaa cgctatagga aatcgtaatt attctttaag aatttggctc
    27601 aagcctgatt tattaaataa atttggaatc acagctactg atgtaatttc tgcggttaat
    27661 gaccaaaatg cccaatacgc aactggtaaa attggcgaag aacctgtaac ccaaaaatcc
    27721 ccttatgttt attcaatcac tatgcaagga agactacaaa atcctagtga atttgaaaac
    27781 attattttaa gaacaaataa tgatggatca tttttaagac ttaaagatgt agctgatgtg
    27841 gaaataggat cacaacaata cagctcacaa ggacgattaa atggcaatga tgcagttcca
    27901 attatgatca atcttcaatc aggggcaaac gcattgcata cagcagaact tgttcaagct
    27961 aaaatgcaag aactttcaaa aaattttcca aaaggtttaa catataaaat tccttacgat
    28021 acaacaaaat ttgtaataga atcaatcaaa gaagttgtta aaacttttgt tgaagctcta
    28081 attttagtta tcattgttat gtatatgttc ttaaagaatt tccgtgcaac acttattcct
    28141 atgatagctg tacctgtttc attgttagga acttttgctg gactttatgt tttaggtttt
    28201 agtattaact tgcttacgct ttttgcttta attttagcca tagggatcgt tgtagatgat
    28261 gcgattatag ttgtagaaaa tattgatagg attttacatg aaaatgagca aataagcgta
    28321 aaagatgctg ctatccaagc gatgcaagaa gttagctctc cggttatttc aattgttctt
    28381 gtgctttgtg ctgtttttgt accagtttct tttatatcag gttttgttgg agagattcaa
    28441 agacaatttg ctcttacctt agctatatct gtaaccatat caggttttgt tgctcttacc
    28501 ttaacacctt ctttatgtgc actctttttg cgacgcaatg aaggagagcc atttaaattt
    28561 gtaaagaaat ttaatgattt ttttgattgg agtacctctg tatttagcgc aggagtagca
    28621 tatatcctaa aaagaaccat tcgttttgtt ttaatttttt gtattatgct tggagcaatt
    28681 ttttatctct ataaagcagt accaaattct ttagttcctg aagaagatca aggtttgatg
    28741 attagcatta ttaatcttcc ttcagcttca gcactccata gaacaatttc agaggttgat
    28801 cacataagcc aagaagtttt aaaaactaat ggagttaaag atgcaatggc tatgatagga
    28861 tttgatcttt ttacaagttc actcaaagaa aatgccgctg caatgtttat aggcttgaaa
    28921 gattggaaag atagaaatgt gagtgctgat gaaatcgcca tggagcttaa taaaaaattt
    28981 gcttttgatc gcaatgcttc aagtatattt ataggcttac ctcctatacc tggattaagt
    29041 atcacaggcg gttttgaaat gtatgttcaa aacaaaagcg gaaaaagcta tgatgaaata
    29101 caaaaagatg taaataaact tgttactgcg gccaaccaaa gaaaagaact atcaagagta
    29161 agaacaacac ttgatacaac tttccctcaa tacaagctta taattgatag agataaatta
    29221 aaacactaca atcttaacat gcaagatgtt tttaacacga tgaatgcaac tataggcact
    29281 tattatgtta atgatttttc tatgctaggt aaaaatttcc aagtaaatat ccgcgcaaaa
    29341 ggtgatttta gaaatacaca agatacatta aaaaatattt ttgtaagatc aaatgatgga
    29401 aaaatgatac cacttgattc tttcttaact ttacaaagaa gttcagggcc tgatgatgta
    29461 aaacgattca accttttccc agcagcacaa gttcaaggtc aacccgcacc aggttatact
    29521 tcaggtcaag ctatagaagc gattgctcaa gtagcaaaag aaactttagg ggatgattat
    29581 tccatagctt ggagtggatc agcttatcaa gaagtttcta gtaaaggaac agcaagttat
    29641 gcttttgctt taggtatgat atttgtcttt ttaattctag ctgctcaata tgaaagatgg
    29701 cttatacctt tagcagtcgt aacagctgta ccttttgcgg tatttggatc atttttattg
    29761 gtatatttaa gaggatttag caatgatata tattttcaaa caggactttt gctcttgatt
    29821 ggactttcag ctaaaaatgc tatcttaatc gtagaatttg caatggaaga gcgctttaaa
    29881 aaaggtaaag gagtttttga agcagctgtt gcagcagcaa aacttcgttt tcgtcctatc
    29941 ataatgactt ctttggcatt tacttttggg gtcttaccaa tgattttcgc aacaggagca
    30001 ggaagtgctt caagacactc tttaggaaca gggcttgttg gtggaatgat cgcagcatca
    30061 actttagcga tattcttcgt gcctttattt ttctatcttt tagaaaattt taatgaatgg
    30121 ctagataaaa aaagaggtaa ggttcatgaa taaaataatt tcaattagca ctatagcaag
    30181 ttttactctt ttgatttcag cttgctcttt aagtccaaat ttaaatattc ccgaagcaaa
    30241 ctatagcatt gataataagc ttggagcctt atcctgggaa aaagaaaaca atagctctat
    30301 cgcaaaaaat tggtggaaag attttgatga tgaaaattta aataaagtgg ttgatttagc
    30361 acttaaaaat aataatgatt taaaacttgc cttcatacac atggaacaag ctgctgctca
    30421 attaggtata gattttagca gtttgttgcc aaaatttgat ggtagtgcaa gcggaagtcg
    30481 tgcaaaaaca gctataaatg ctccaagcaa tcgaactggg gaagtaagtt acggtaatga
    30541 ttttaaaatg ggacttaatt taagctatga aatcgatctt tggggaaaat atcgcgatac
    30601 atatcgcgcc tcaaaatcag gctttaaagc aagtgagtat gattatgaag ctgcaagact
    30661 ttctgttatt tcaaatacag ttcaaactta ttttaatctt gtaaatgctt atgaaaatga
    30721 aaatgttctt aaagaaacct atgaatcggc aaaagaaatt tataggatta atgatgaaaa
    30781 atttcaagtt ggtgctgtag gtgaatatga acttgctcaa gcaagagcca acttagaaag
    30841 tatggctttg caatataatg aagcaaagtt aaataaagaa aattacctta aagctttaaa
    30901 aattttaact tcaaatgatt taaatgacat actttacaaa aatcaaagct atcaagtttt
    30961 taatcttaaa gaatttgaca ttccaactgg aatttcaagt accatcttgc ttcaacgtcc
    31021 agatattggc tcttttttag aaaaattaac tcagcaaaat tatcttgttg gagtagctcg
    31081 cacgactttc ttacctagcc tttctttaac aggattattg ggatttgaaa gcggggattt
    31141 agataccttg gttaaaggag gttctaagac ttggaatata ggtggaaact ttactctgcc
    31201 tatttttcat tggggtgaaa tttaccaaaa tgtaaattta gccaagctta ataaagatga
    31261 agcttttgta aattatcaaa atactttgat tactgctttt ggagaaattc gctatgcttt
    31321 agtagctaga aaaactatac gcttacaata cgataatgca caagcaagcg aacaatctta
    31381 caaaagaatc tatgaaattg ctaaagaacg ctatgatata ggagaaatgt ctttgcaaga
    31441 ttatttagag gcacgtcaaa attggcttaa tgctgcggtt gcttttaata atattaaata
    31501 ttcttatgcc aattccatag tagatgtaat caaagcattt ggtggaggat ttgagcaaag
    31561 tgaagatacg agtaaaaata taaaagaaga atcaaaaaat ttagatatgt cttttagaga
    31621 atagtttatt ctattctcta aataaattaa aaatctttgt ctaaatctgc atctgtaatt
    31681 tcataagcct tgtaaatagc aggcaataat tttcttatag cataatcaaa atgataaaat
    31741 tgcttatata cctcttctgg atttaaattt ttagcattct taaaatcaaa tacttcagta
    31801 tcattgattt tggcaatatt ttcatcaaaa taagagtaaa actctgctct ttgtttaaac
    31861 aaagcattta aattttgaac aattttggct ttatccattt tatatccttt ttaaataatt
    31921 taaaaactta atcccatttt ttatttaaga aataaaaaat ttactcctat tttagctaaa
    31981 aattgataaa gttatatctt aaatatttta atatataggc cacttatgaa tttatttcaa
    32041 aatttagctt taaaatactc tcatactatg atggaaaaat ccctccaaaa aggtttcaat
    32101 gtcgaacttt taaaacaacc cgaagaaaaa attccaaaac aagacaaaag ctatatgctt
    32161 tatgcccatg tacctttttg ccatactttt tgtccttatt gtagctttca taaatattat
    32221 tatgatgaaa atttagccaa agtatatttt caaaatctta gagaagaaat taaaatcatg
    32281 aaaaataaag gttttgattt tacctccatg tatgtgggtg gtggtacaac actgattgat
    32341 gaagaggaat tattaaaaac cttagaactt tgtaaaaagt tatttaatat aaaagaaatt
    32401 tcatgcgaaa gcgatccaaa tcatattgat ccaaataagc tttctatgtt taaaggtata
    32461 attgatcgtt taagttgcgg gattcaaagt tttgatgatg aaactttgaa aaaagtggca
    32521 agatataata aatttggttc atctaaagaa cttcaagaaa aaatttcaaa agctttagga
    32581 attttaccta tttttagtat agatcttatt ttcaatcttc caggacaaaa cgaaaaacaa
    32641 cttttaaatg acttagaaat tgctaaaaat ttagccccac aacaaatcac aacctatcct
    32701 ttaatgaaat caaatcttac caaagataat atcgctaaaa gtctaggagt gagcattaaa
    32761 gataatgaat ttacttatta tcaaatcata cgagaatttt ttaaagacta tacccaaaac
    32821 aatggttgga gtttttcttt agaaaaaaac aagcttaatg acgaatatgt cagttctcat
    32881 catgaatacc taggagtagg cagcggagct tttagctttt tagatgggga gcttttaatc
    32941 aatgcattta atctaaatga ttatgctaaa tttatacaag aaaaacaaaa tgctaatata
    33001 gccaaagctt gttttgataa aaaagaaatt atcaaatatg tctttttaac tgaaattttt
    33061 tcagggaaaa tagaaattga taaatttaat aaaactctaa attgcaatct cgaaaaagaa
    33121 cttttcatag aacttttagg acttaaaaca agtggtgcca tcataaaaga tcaaaatgct
    33181 ttaatcgcaa ctgaatttgg tcaatatctt tttgtggttt taatgaaaga tttttacaca
    33241 ggaatggatc ttgtgcgcgc agtatttaga gatgataagc gtcttaaaaa taaagattat
    33301 atcgatatca tgaaagaaaa tattgatccg cttaactccg ctagtatgga atttaaagcg
    33361 gagacaaact aaaagggacg aacaaccatc attaaagcga tgataataaa cattatagtt
    33421 ggaaattcat tataaattct aaaatatttt ccacttttag tagaagtatc atttgctaaa
    33481 gcttttaaac aataataatt atgtatatga aaaataatca aaagtgtaac acaggtaagt
    33541 ttaacatgca taaaacccgc acctaccatt aaaacttcct tatgagcatg caacattaaa
    33601 cttcctgtga ttaaagtcac aatcattgca ggagtttgta tataataata aagctttctt
    33661 tcttgaattt ttacaacctc gacaaaacct ttattgtctt tatgttcagc atgatacaca
    33721 aaaagacgag gtaaataaaa aagacccgcc atccaagaaa caaatgccaa ataatgcacc
    33781 catttaatcc aaaaataata atcattaatc cattctgtca tcttttttcc tttttttaaa
    33841 tatttcttgt attaaaatca aagccacact tatatttatc atgacatctg caacattaaa
    33901 aatagcaaaa ttaaaccatt tatgccaaaa aaacatatcc actacacctc catgtataaa
    33961 acgatccaat aaatttgaaa cgccggcacc aagcatcatt ccaaaagcta tgctatgagt
    34021 ttttaaaagt gttctttgcc aaaaaagata aataaaaagc acgccaatta aagcaagatg
    34081 taaatatttt aaattatgtt ctaaaaaact caacattgaa aaagctacgc ctgtatttag
    34141 agcataagtt aaatctaggt attcactctg ccatctaaat cctgctaaag ttaaggattt
    34201 tacccattga tcaagggcaa aaaccaaaac aaaggcaccc caaaaataaa aaataaattt
    34261 aaaagtttta gccatttaaa gctttcttaa aaaactccac aacatttttc atttcttttt
    34321 ctaagagctt aatatctctg gcttctagta aaagtcttat caaattttct gttccagaat
    34381 agcgaaataa ggtattaata tttttatttt ctaaatcttt ttttaattct tttaaacctt
    34441 taattttatc taaatctttt ttttctgcaa ttttaagatt gattaaaagc tgaggataag
    34501 gtttaacttg acccaaaata gaacttgcag attttttctt agaaagcatt aaagcactaa
    34561 attgcaaggc agctatcaaa ccatctccag tttttgcata atcgctaaaa ataatatgcc
    34621 cactttgttc tccaccaaaa tttccaccat tggcttttag tttttcaagc acatatttat
    34681 cgccaacatt acaagtatca agttctatac catgtttatt taaaaactct tttaaagcac
    34741 cattactcat tatagtagcc acaacacttg attgtaattt accttgttct ttaagataaa
    34801 gtgccaatac gcccaataaa ctatccccat tagccacttc gcctttttca tctacaacca
    34861 ccaaacgatc tgcatcacca tcaaaagcaa agcccacatc tgcacgcaaa cgctttacct
    34921 cagcagctaa gtttacagga tacaaagctc cacaattttc attgatatta agtccattag
    34981 gtttatcact cattactata acttcagcgc ctaattcctt aaaaacagta ggtgctacct
    35041 tataagctgc cccatgagcc acatctaaaa caacacgcaa agactttaaa gtaagatctt
    35101 ttggaaaaga atttttaata gaaacaatat atcttcctat aacatcatca attctttttg
    35161 cttgaccaat tttttccata tctaccttag aggcttgtat aagcttatca tcaaaataaa
    35221 tttcttctat ttttttctct atatcttcac tgagtttatt tccatgagca tcaaaaaatt
    35281 taataccgtt atcataataa ggattgtgag aagctgaaat cataatccct gcgtcacaac
    35341 gcatatcttc agttaagaat gcaatcgcag gagttggcat aggaccaatt tgtataacat
    35401 tatatcctat agaagtaagc cctgaaacaa tagcattttc tatcatatag ccacttcttc
    35461 ttgtatcttt tcctactaag atattattag taatactttt atctttaaaa taaatacccg
    35521 cagccattgc taaacgcata gccaaaaaac tatctaaaaa ttcacccgct tttccacgaa
    35581 ctccatcagt tccaaaaagt ctcattgcaa acctttctag caaaatttaa agacaattat
    35641 aacaaagcta agataaagaa atttaaacaa gctctaaaaa tagagcttgt ttggaacctt
    35701 atagttcagg tttaggagtt ttttcagtag aaataggaag ttgtggataa acaattgctg
    35761 gttttgttcc tgttaaggat tttaagaaag tttcaatact ttttgcttct ttatcagaaa
    35821 ttttaatgcc aagttgcaca ctacccattt ccttaatagc atcttttaga ttccaaatag
    35881 cgccattatg aaaatatgga gcagtttcag caacatttct taaagttgga gtttttacca
    35941 tgccatttgc atcaccttta aaatcaccta aatttgcaaa tttatattta ccagcaactt
    36001 caaacgcttg catattgcca cctaaattca caccattatg acaagctaca caacccttgt
    36061 ctataaaaag ctttaagcct ttttgctctt cttttgttaa agctttttca tcgccttcta
    36121 aaaatttatc aaaacgagat ggagtgatca aggttctttc aaaatttgca attgcatcag
    36181 caatattgtc aaaatttaca ccacttttac catagatttt tttaaactca ctcacatatt
    36241 caggcaatga tgaaattttt tctactgcga gtttagcagg agttgccatt tcaggatcag
    36301 cttggattgg acctttagct tgatcggcta atgttcctgc acgaccatcc caaaattgag
    36361 tattatttaa aaccgcatta taaactgttg gtgaatttaa atgatgggga tttgctgtcc
    36421 atttatgacc tattgcagta ctaaccccat ctgttccacc aagtcctaca ttgtgacagg
    36481 tattacaaga aatgatacca ctttttgaaa ggcgtggttc aaaataaagc tttttgccaa
    36541 gctctgcttt ttcaagagta aattcactag cctttactcc attttgtttt aaaatttcat
    36601 caacaccttt ttgatctttt ggcaaggcaa caagacctga atttttagct tcatctataa
    36661 gacttgcagc atttaagctt gaaaaagcaa ctaaggatgc gattagcaat gcttttactt
    36721 tcatttataa actc
//
LOCUS       DBBXPZ010000005        36040 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.005, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000005 DBBXPZ010000000
VERSION     DBBXPZ010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 36040)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36040)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36040
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.005"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..234)
                     /locus_tag="ACJFD7_000172"
     CDS             complement(<1..234)
                     /locus_tag="ACJFD7_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859027.1"
                     /translation="MIRNFFIGMSFLGILFLAFYTLYDKKKESIFSLNTCQPLTCDLN
                     LQDCVFSFNKKNIEVSAYPKPIKIFNKTTIKIKN"
     gene            390..1367
                     /locus_tag="ACJFD7_000173"
     CDS             390..1367
                     /locus_tag="ACJFD7_000173"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase family protein"
                     /protein_id="HGG0859028.1"
                     /translation="MLKRLALLIALSSLMLHASDLVKIYLNQGLDAVGVAIEKELTQK
                     DFWLSEIGDKNISLGYYDDNVAIVLTNKTDKILRVYSYEDGKIRKDFEQKEIITGLMG
                     DKKIEGDLKTPVGFYELGHKFNPGDPYYGPFAFATTYPNLLDKVQGKTGGGIWIHGYP
                     LDGSRLDEFKTRGCIALFNNNLEKFAKVVQDKKVFVMTEEKEKIRAKKDQIASLLADL
                     FTWKLAWTNSDTNAYLSFYDEQEFKRFDKMKFEQFASMKKSIFSRKEDKKIKFSDINI
                     SPYPNLENETMYRISFYEDYYTKNYQFRGDKILYVKIDSKGKMKILAEQ"
     gene            1368..2354
                     /gene="alr"
                     /locus_tag="ACJFD7_000174"
     CDS             1368..2354
                     /gene="alr"
                     /locus_tag="ACJFD7_000174"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HGG0859029.1"
                     /translation="MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLL
                     APLAKNLGVSFVAVKSEEEAREIEEFFENILILSHRPHGNENSRFIYALNDISQVKNY
                     KQDIKIHLKIDTGMHRNGICVENLEHAINLIQGSDLKLTGMFTHFASADEMDGSFFVQ
                     KENFQKAKKIVKKYFSNLLFHSYNSAALFRGKIPEDEYCRVGLVQFGYGDSNLKRVLS
                     LYAHRLSQRILQKGQSIGYGGIFTTAKDMEVATYDLGYADGLFRYNGKGELVLGNGKT
                     MLGKMSMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLNPNIQRVLV"
     gene            2357..2824
                     /locus_tag="ACJFD7_000175"
     CDS             2357..2824
                     /locus_tag="ACJFD7_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HGG0859030.1"
                     /translation="MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAV
                     RRAGLDYWDKLEPIIWENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFG
                     SESYGLPMELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFRNFAS"
     gene            2928..4394
                     /locus_tag="ACJFD7_000176"
     CDS             2928..4394
                     /locus_tag="ACJFD7_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005283 - amino acid:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine/glycine:cation symporter family protein"
                     /protein_id="HGG0859031.1"
                     /translation="MKLDIMLDFANKASDIIANKIVPNTDIIMVVLLIVCGLYYSFLT
                     RFVQFRMLSSVFKILTEKNKGHAKEHISPFQALMISTASRVGIGNIAGISLALATGGA
                     GALFWMWVMAFFGGASAFAESTLAQVYKSKDDTGGFKGGPAYYIKKALGSHFFGAFFA
                     FILIITYAYGFNGLQSQTMTSSFKVYYDMFNPNAAVDFASSSWPMIIGIVLTIFGAWM
                     FFSHHTKIGKISSLIVPFMALAYVLLAVIAVLMNFDKIPSVIHMILQSAFDFKAIFGG
                     FAGSALVIGIKRGLFSNEAGMGSAPNAAAAALTSHPAKQGVIQAFSVLIDVVVCTSSG
                     FLVLFSMAYLGLGENKIDGGMPLVQEAMREYYGSFGIHFITIAIVLFAITSLIGNYYY
                     AQANVKYLTNSKFVMNLFRITAVAMIFIGSQMNLKLAWNLADLTMAFMATTNIISLLL
                     LGGIVNKVLKDFNTQQKSGIDPKFNASKLGIKNAECWD"
     gene            complement(4422..5150)
                     /gene="glnQ"
                     /locus_tag="ACJFD7_000177"
     CDS             complement(4422..5150)
                     /gene="glnQ"
                     /locus_tag="ACJFD7_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HGG0859032.1"
                     /translation="MIEVKNLQKKYGELEVLKNINTTISKGDVIAIIGPSGGGKSTFL
                     RCINRLELADSGEILINKQNILDKEIDINKIRQKVSMVFQHFNLFANKNVMENLCLTP
                     IKTGILSQEEAIKKAKLLLAKVGLADKENIMPHKLSGGQKQRIAIARSLMMNPDVILF
                     DEPTSALDPEMIGEVLSIMKDVAKEGLTMLVVTHEMGFARNVANRIFFMDKGKIAVDA
                     SPKEVFENPSNERLREFLNKVLNH"
     gene            complement(5143..5886)
                     /locus_tag="ACJFD7_000178"
     CDS             complement(5143..5886)
                     /locus_tag="ACJFD7_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HGG0859033.1"
                     /translation="MNQKNIRIFVFFVIIILWGYFSFPIEILKIQDPSGVASYGYTEN
                     AKAYLKSYLITLLLTACAVIIGVIIGFSLAILRFSKFKTLNFIIDEYIDIIRGTPVIL
                     QLMIFAFVIFTFIDNLYAAILALGLNSSAYIAEIVRSGINSVDKGQMEAARAMGLDYK
                     TSMKEIILPQATKNILPALANEFISLFKETSVVGFISVIDITMQSQSLQAVLYNPKPI
                     IFTGLVYYVSVKIFSYFAKKLELRMNKND"
     gene            5969..6142
                     /locus_tag="ACJFD7_000179"
     CDS             5969..6142
                     /locus_tag="ACJFD7_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859034.1"
                     /translation="MLEFPKNKVVFMEILDFILIVIFVFLMIVLVIGFNHQMMQKNKE
                     REERFKKYKKGEQ"
     gene            6142..6711
                     /gene="thiJ"
                     /locus_tag="ACJFD7_000180"
     CDS             6142..6711
                     /gene="thiJ"
                     /locus_tag="ACJFD7_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1 family glyoxalase III"
                     /protein_id="HGG0859035.1"
                     /translation="MSKKVLIPLAQGFEEAEFIGIADVLKRAKELNPDLEVVIASLNS
                     ELLVKGANSISIKADCSIEDVDIENLDAIALAGGFEGMMNLKNSNVILNIIKQLHSKN
                     KIVAAICASPIVLNEAGVLEGEFACYPSCEVGLNGNRVNKAVVVNKNVITSAGPATAI
                     LFGLELAKKLCGDEIYQKLYEGMLLPLTK"
     gene            complement(6741..7106)
                     /locus_tag="ACJFD7_000181"
     CDS             complement(6741..7106)
                     /locus_tag="ACJFD7_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HGG0859036.1"
                     /translation="MQEKTIFELIVEGKLPCNKVLESDDFLAFHDIAPKAPIHILIIP
                     KKYFKDFQEFDPELMAKMTSFIQELAVLLGVDKSGYRLVTNCGKNSGQEVFHLHFHML
                     GGFELPKEKTKKENPQALF"
     gene            7229..8221
                     /gene="pheS"
                     /locus_tag="ACJFD7_000182"
     CDS             7229..8221
                     /gene="pheS"
                     /locus_tag="ACJFD7_000182"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HGG0859037.1"
                     /translation="MQNFIEQIQKCENLNDLEAIRISVLGKKGILTEGFTKLKELEDE
                     AKKEFAAKLNAQKEIFNEAYLAKFKDLENLALEERMKQDALNFNYFDESITTGALHPV
                     MSTMDKIIEYFIALNFSIEKGPLIEDDFHNFEALNLPKSHPARDMQDTFYFDDKRLLR
                     TQTSPVQIRTMLAQKPPIRMIAPGAVFRRDFDITHTPMFHQVEGLVVEEGQKVSFANL
                     KSVLEDFLRYMFGDVKVRFRPSFFPFTEPSAEVDISCVFCKGKGCRVCKHTGWLEVLG
                     CGIVDPNVYNFVGYENVSGYAFGLGVERFAMLLHQIPDLRSLFEGDLRLLEQFR"
     gene            8218..10539
                     /gene="pheT"
                     /locus_tag="ACJFD7_000183"
     CDS             8218..10539
                     /gene="pheT"
                     /locus_tag="ACJFD7_000183"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HGG0859038.1"
                     /translation="MIITKSWLNDWLELEEISSDKIAKTLNSIGIEVDRVGALKAPDK
                     VVVGYVKEKIKHENSDKLSICQVDIGSETLQIVCGAANVDAGQFVAVATKGAIMPNGM
                     EIKEAKLRGVDSCGMLCSSLELGFEKINEGIMLLDESIGKLELGRPLNTYEIFNDELI
                     EVELTPNRGDCLSIYGIARDLAAALNLNLKEPKPFKESENVLGIGRILRLAAEKELNG
                     LYNYRAIGLKEEIQTNLLLSLRLAQIEGLGKNSIENLLNYATHSTGVLFNAYDLSSFS
                     EKDEEFTINLSKQVHGETKVSYKDKLLSFSGIFQNNESRCKDDSKIIIIEANYTDPLV
                     IADAKIYHKDQDEKMLYRSFRGSEPKLNLGMDFLLSIFEQIPNLVIYSSSQQILTDKE
                     LPIIPISIEGISDIIGQNVDKDEVLKILKKLGFELILSGEGLINVKAPLHRPDIKNLS
                     DICEEVVRIIGIDNIASKGLEFIEKNRLNSAYKNYIEFLNLRKRAVASGYFESLHYVL
                     DNEEELKRLGFDSVKLKLINPITAELNTLRTTLLNHLLNAASLNAKNSKKIIKLFELG
                     AVFNVNNQELNHIAFIHSGLKEEAKISNKAKPESVQFYDFLLDIKNIIGDFKLKSSKY
                     NILSPYEQADIYLSDIKVGFIGRLHLKIENERDLPKTYICELDLDLIRQDFKIAKPYS
                     KFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFRLVDIYSDENLKEFYSITISF
                     SFRDINKTLEDNQVNECMDKILNTLKNLGLDLR"
     gene            10536..11822
                     /gene="aroA"
                     /locus_tag="ACJFD7_000184"
     CDS             10536..11822
                     /gene="aroA"
                     /locus_tag="ACJFD7_000184"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003866 - 3-phosphoshikimate
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HGG0859039.1"
                     /translation="MKIYKLQTPVNAILENIAADKSISHRFAIFSLLTQEENKAQNYL
                     LAQDTLNTLEIIKNLGAKIEQKDSCVKIIPPKEILSPNCILDCGNSGTAMRLMIGFLA
                     GISGFFVLSGDKYLNNRPMRRISKPLTQIGARIYGRNEANLAPLCIEGQNLKAFNYKS
                     EISSAQVKTAMILSAFRADNVCTFSEISLSRNHSENMLKAMKAPIRVSNDGLSLEISP
                     LKKPLKAQNIIIPNDPSSAFYFALAAIILPKSQIILKNILLNPTRIEAYKILQKMGAK
                     LEMTITQNDFETIGEIRVESSKLNGIEVKDNIAWLIDEAPALAIAFALAKGKSSLINA
                     KELRVKESDRIAVMVENLKLCGVEARELDDGFEIEGECELKSSKIKSYGDHRIAMSFA
                     ILGLLCGIEIDDSDCIKTSFPNFIEILSNLGARIDY"
     gene            11812..12645
                     /gene="ispH"
                     /locus_tag="ACJFD7_000185"
     CDS             11812..12645
                     /gene="ispH"
                     /locus_tag="ACJFD7_000185"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-enyl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA];
                     GO_process: GO:0050992 - dimethylallyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HGG0859040.1"
                     /translation="MIIELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEISRL
                     QKNFNVKTLENIQALSNEKKAIIRTHGITKQDLEELRKKDIEIFDATCPFVTKPQQIC
                     EQMSKEGYEVVIFGDENHPEVKGVKSYVSTKAYVVLDKKELQNIKLPNKIAVVSQTTK
                     KPEHFMEIVNFLILKTKEVRVFNTICDATFKNQDAIKELSLKSDVMVVVGGKNSANTK
                     QLFLIAKTNCEDSYLIETEEELKKEWFLDKKHCGISAGASTPDWIIQKVIAKIKKFKI
                     N"
     gene            12777..14447
                     /gene="rpsA"
                     /locus_tag="ACJFD7_000186"
     CDS             12777..14447
                     /gene="rpsA"
                     /locus_tag="ACJFD7_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HGG0859041.1"
                     /translation="MSEVNKKVQGGVDDYLEEEDFGQLLEAFDKSREEATTEGVIVEI
                     KNDEVYVDIGKKSEGILALSEIQDDNSKLLFNVGDGIKVAVMGSRGGRSLLSHKKALR
                     KEKVIEFIKNYQENQDDIFTVKVVGKNKGGLIVVDENNVEFFLPKSQYGFKETNNIIG
                     KTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGM
                     FVDVGGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPD
                     PWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYIN
                     KGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEGEITSVTSFGAFV
                     KLGGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKISLSTKELNSSPV
                     QEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDALIHKEDISTSMLENLKIGDDIEA
                     AIVFIDEKKNRIRLSVKNLVRMKEREVLNEINNDDKVTLGDIIKDQLA"
     gene            14447..14935
                     /locus_tag="ACJFD7_000187"
     CDS             14447..14935
                     /locus_tag="ACJFD7_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859042.1"
                     /translation="MKKYITISILSILLLILLAVVFTLLWQFKANVNFIPQFAKDTNT
                     QPSIQTQNQDLSWQEELAKWPTRDFTPAAEKFTLYFDADTSELKEKNKYYQLIVGKYD
                     IYSMFCLRQTLNSFNVKYFLLKSGDSPEIFLDTGNEKLIDDIIKELKKYKINTEVKEI
                     WL"
     gene            14932..16515
                     /gene="serA"
                     /locus_tag="ACJFD7_000188"
     CDS             14932..16515
                     /gene="serA"
                     /locus_tag="ACJFD7_000188"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004617 - phosphoglycerate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HGG0859043.1"
                     /translation="MKKKIIVCDAILDKGVDILRKAEDIELIEAAKFPKDELMQMLSD
                     VEVAITRSSTDVDVNFLNHAKKLKALVRAGVGVDNVDILECSKRGVIVMNVPTANTIA
                     AVELTMAHLLTSARSFVNAHNFLKIERKWEREKWYGIELMNKTLGVIGFGNIGSRVAI
                     RAKAFGMKILAYDPYISASKITDLDMEQAKNLDEILEKSDFITIHTPKTKETNGMIGK
                     QEIAKMKDGIRLINCARGGLYTEEALYEGLKSGKIAWLGIDVFDKEPATNHPLLDFEN
                     ISVTSHLGANTLESQDNIAREACEQALSAARGVAYPNALNLPIKTEDLPPFVAPYIEL
                     VSKMAFLAVQIDKNPIKSIKLEAEGIIGEYANSMLTFAAVGALGGILGEKINYVNAEF
                     VAKEKGVELSCETLPNSGYNNKLSVKIITENSNISVSGTVFNENEQRIVGLNGFKTDF
                     KPKGKMIIFKNKDIPGVIAKISSVLAAKNINIADFRLGRDGFGYALAVVLIDEKVQKE
                     VLDELKQLEACVFVQYVEI"
     gene            16502..17164
                     /locus_tag="ACJFD7_000189"
     CDS             16502..17164
                     /locus_tag="ACJFD7_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HGG0859044.1"
                     /translation="MLKFKILIIEDDIDLNELLVLKLKSSGYEVISLADFFGVEDLLD
                     NEQIDLLIVDRNLPSGDSLEKIQDLREQGYKEAVIFLTAKALHQDLLEGFESGCDDYV
                     CKPFDFNELLLRIKAILKRHKKEEEKLSFGDFILDLVSYEFFYKNQKLEISNLDYELL
                     KCFFENPNTLLTRQFLSESVWKDDTTSDKTINIALTRLRNKFPKLKDHIISVRGIGYK
                     LC"
     gene            17158..18447
                     /locus_tag="ACJFD7_000190"
     CDS             17158..18447
                     /locus_tag="ACJFD7_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HGG0859045.1"
                     /translation="MLKTKNIFIVFFVVLALIFGFIFYTFTNSYLNFLLIKQYEQKIK
                     SLDDVLKFSLLEHLNDANIKDFAKDTRADFIILNNDMKISSVKNPDFFSNLKEGEILN
                     FNSKKILTKSFIYKGYKYIIIVYPRFLDLELFWTKMAIGFGVCLLFVFILMLLLGRRI
                     EKNFNKILDFLDSIGDHKVVILEKGMFKEFNLLNEKLLKTKDKILKNTQKNKKQSDKI
                     TLKNTQLASVISAISHELKNPLSVIDLSLEMLKDEKLEDKKLKKELLEKISRQSVKLN
                     ALTHKLNFVFNLNSEALQMQEFDLFSLCEKITKNPGFERVALQGKSTKVKADEFLIEQ
                     VIINLLSNALKYSQKEVILMARDQKIIVQDFGKGIEEDKIKLITKKFYKIDVKSDNSF
                     GLGLFLVKKILNIHKSYLEISSTLGYGSSFSFKLSQG"
     gene            18451..20382
                     /gene="abc-f"
                     /locus_tag="ACJFD7_000191"
     CDS             18451..20382
                     /gene="abc-f"
                     /locus_tag="ACJFD7_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protection-like ABC-F family protein"
                     /protein_id="HGG0859046.1"
                     /translation="MALIDLIEASKKFGDKIVLNEVNFSANEGEKIAIIGKNGEGKST
                     FLKTLLGTLPLDSGRIIRQNGKSIAMLSQTVDFNANLSVKEAIKQELVEIYNTLEEYE
                     ILHKKLEEDPSNKDYLQKIDTLMTLIDSKDAWSIESKIIRVLKEFSLLEYENRIISTL
                     SGGEIRRVGLCILLLKNPDILLLDEPTNHLDVYMTSFLEELLKNSKMCVIFISHDRYF
                     IDAIAHKCVEVEQGKLSIFKGGYANYLEKKTQILQSLAKSHETLLKQLKSEEEWLRRG
                     VKARLKRNEGRKERIFKMREEAKKNPGVIKRLKLEISRAALNFNGEKTINRKKMLFEL
                     KNISKNINNKNLFKDFSTRILQGERIAIVGRNGCGKSTLLKILLGQIKQDCGEIKRGE
                     LKIGYFDQARSLVNSDKSLLEIFCPNGGDRVEVRGKNMHVYGYLKNFLFPKEFLDKSV
                     ALLSGGEKNRVALALLFTKEYDVLILDEPTNDLDIATINILEEYLLSFEGAILLVSHD
                     RYFVDKIATKLYAFEGNGYINILHTLYTEYLENEKEIEELDNFALELQTQEQNNNQKE
                     KSSKKLSYKENEILKNHPEKIDFLEQKIAKLNQDLSDPNVYQEIGINKLYQELEVMQK
                     ELEILENEYFLVLEKSENL"
     gene            complement(20411..20485)
                     /locus_tag="ACJFD7_000192"
     tRNA            complement(20411..20485)
                     /locus_tag="ACJFD7_000192"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(20451..20453),aa:Gly,seq:gcc)
     gene            complement(20496..20582)
                     /locus_tag="ACJFD7_000193"
     tRNA            complement(20496..20582)
                     /locus_tag="ACJFD7_000193"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(20546..20548),aa:Leu,seq:caa)
     gene            20762..23014
                     /gene="flgL"
                     /locus_tag="ACJFD7_000194"
     CDS             20762..23014
                     /gene="flgL"
                     /locus_tag="ACJFD7_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HGG0859047.1"
                     /translation="MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDAS
                     TYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSN
                     SQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGNYYGDKNNINV
                     VTGAGTESPYNIPGWDLFFKADGDYKKQISTNVSFTDNRWDLNKDPDKTKYLTGDSKW
                     QQLIGQGYVKDNSLDADKDFEYDDSKLDFPPTTLYVQGTKPDGTSFKSAVLVKPEDTL
                     EDVMENIGALYGNTPNNKVVEVSMNDSGQIQITDLKQGNNKLDFHAVAFTPQADTKDE
                     LKNIIEAANQEGISMNEVTNRVMQAATAAPSNGDITKLNNPVTVTINNQQFTIDLKQT
                     DFIKSKMTDTDGNAANEADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMA
                     GDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPIMHTNPATGNS
                     GVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNGQINNADYTQIQQLMKDSQATVD
                     VSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSL
                     TIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNT
                     TMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTT
                     ISQLSLLNYM"
     gene            23124..25964
                     /gene="ftsK"
                     /locus_tag="ACJFD7_000195"
     CDS             23124..25964
                     /gene="ftsK"
                     /locus_tag="ACJFD7_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HGG0859048.1"
                     /translation="MLAPGMGEWVYKANLFLFGEFGYYYPFSLLILNYLYYKKKYKIE
                     NFKRRELFGFSLAFFSALLLFSVFYREFGYILEIVYGFFSIILGRTGSGIFALLLLLF
                     SLVLLFPKFAKEILKIELDFTYLLKIEQAFKSLLMRVFGGENEKEDVGKSEPIAPKLN
                     ILQDSIYGNLQINKKGETNNLEQIIKDSNINASKNSITTAKENFEKLKNQILDETIEI
                     DKQSLKESRSFVYEHSQQVRNFAQKASKMSISLDEDFNFISEEEVDMIPERFLKPKKL
                     EDIKQIDTNKNLDEPSYKRKNIEIPVSNQEVKPKIFTKELELRENLIKKEKLEQEYKA
                     YQNEILENKVKQEIKKLEEYDAINSSDIIEGNKYSFNSPKTIKTETEESDKINENKNL
                     DKADNIFKFAPIVEELNHPYIEPTPIKNINEIVIEEKNTLDFIQNTETKIDNEKTNDQ
                     EIKLQKAVLAKEIAINQALLREIEQGEVEKPKDFTLPPLDFLANPKEHKQEINESEID
                     KKIYNLLEKLRRFKIGGDVISTYVGPVVTTFEFRPSADVKVSRILNLQDDLTMALMAK
                     SIRIQAPIPGKDVVGIEVPNDEIQTIYLREILQSEVFKNAKSPLTIALGKDIVGNAFV
                     TDLKKLPHLLIAGTTGSGKSVGINSMLLSLLYRNSPKTLRLMMIDPKMLEFSIYNDIP
                     HLLTPVITDPKKAVNALSNMVAEMERRYRLMADAKTKNIENYNEKMKELGGEELPFIV
                     VIIDELADLMMTAGKDVEFYIGRLAQMARASGIHLIVATQRPSVDVVTGLIKANLPSR
                     ISYKVGQKIDSKVILDAMGAESLLGRGDCLFTPPGTSSIVRLHAPFASEFEIEKIVDF
                     LKDQQSVEYDESFLKDQQSVGVTTNESFDGEVDELYEEAKRVILEDGKTSISYLQRRL
                     KIGYNRSANIIEQLTQNGILSEPDAKGQREIL"
     gene            complement(26050..26322)
                     /gene="rpsO"
                     /locus_tag="ACJFD7_000196"
     CDS             complement(26050..26322)
                     /gene="rpsO"
                     /locus_tag="ACJFD7_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HGG0859049.1"
                     /translation="MALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLK
                     IYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNSYSKLITELNLRDK"
     gene            26497..26907
                     /locus_tag="ACJFD7_000197"
     CDS             26497..26907
                     /locus_tag="ACJFD7_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RrF2 family transcriptional regulator"
                     /protein_id="HGG0859050.1"
                     /translation="MLFTKASEYALLSLIYISQKETPQDVDSLALELDIPKSFLAKIL
                     QTLAKDGLLKSFKGAKGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGTCPNNKEE
                     NCTLMPMLVNLQNKVDEFLDSITLEDIMKNNGKK"
     gene            26894..29068
                     /gene="flhA"
                     /locus_tag="ACJFD7_000198"
     CDS             26894..29068
                     /gene="flhA"
                     /locus_tag="ACJFD7_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HGG0859051.1"
                     /translation="MAKNKIVDLVFPFLGPLIAPVLKAKSLTIVGFLVCILAIIIVPL
                     PSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMIL
                     SEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARF
                     TLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGAMDGSSKFIKGDAVAGI
                     IITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAIIITRA
                     SKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFMALVFLSLGYLTK
                     QVKEGKIDITTVKKSKPSAAAASQSGAGGTTAAPAKKSEEEILKEEEHKINDILKVEI
                     LELELGYGLIKLAENELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLKG
                     VSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATLNGYIVI
                     DPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEGALGVASVSLIQKIL
                     KDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGNLDI
                     FILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVAAVANGRIKPFILCVE
                     PQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGIIRIEL"
     gene            29077..30123
                     /locus_tag="ACJFD7_000199"
     CDS             29077..30123
                     /locus_tag="ACJFD7_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HGG0859052.1"
                     /translation="MKIYHLSHTDLDGYACQFIVNFYFKNVKFYNSNYGKEINENFNS
                     IIGDIEKDENFGKAIILITDLNLNLNQCEEFEKICKEKNTKIFLLDHHQSGEECAQKY
                     SWYLLDSKRCATKIVYDFFSKICTPVLELSKFVDVVNAVDIWLSEDENFELGKVFLGL
                     IANAKEINRVMFKESQIDYMFFLLDKAWKFIGKENANILLDNATHFIKKDYFARKNDD
                     TLSNLISYFVVEKLSELKENFSIEYEGHKGILTSNIGNTSVIGNDFLVKNPDYDFFID
                     VSSRKTLSFRANGKIDVSLMAKNLVGGGGHKNASGGLFATFKDGANYNYIKAQIIDLI
                     KSKELKKENNESKQ"
     gene            30107..30343
                     /locus_tag="ACJFD7_000200"
                     /pseudo
     CDS             30107..30343
                     /locus_tag="ACJFD7_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344280.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            30347..30979
                     /locus_tag="ACJFD7_000201"
     CDS             30347..30979
                     /locus_tag="ACJFD7_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859053.1"
                     /translation="MKKYILIFFSLYSLSFANIYEKLNDFAYEKKPNKDFKIQEVKLV
                     QFSQENKDCLELLIEASQVRILNSYNSCQKLSKDESFQKFLNEDFLKLYKNNGYLINE
                     NLQNLKNTMQDIMIYYKLRYSFSKDVKDMSKNKNLDILNIDEKDGGTLLYKINNQACV
                     GIELTRHDSRMAMKIYGIENLDKECKLFIQSPSFKDLSYTKKDFKWYYLE"
     gene            complement(30957..31107)
                     /locus_tag="ACJFD7_000202"
                     /pseudo
     CDS             complement(30957..31107)
                     /locus_tag="ACJFD7_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344278.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            31312..31530
                     /locus_tag="ACJFD7_000203"
     CDS             31312..31530
                     /locus_tag="ACJFD7_000203"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859054.1"
                     /translation="MMNKFSIVLTLLLCGSCALALDPNLEKTKSATGIDLPTAKWNLP
                     KELNEDGTIDETKMPKKFRIWQNGYFGK"
     gene            31641..31862
                     /locus_tag="ACJFD7_000204"
     CDS             31641..31862
                     /locus_tag="ACJFD7_000204"
                     /inference="COORDINATES: protein motif:HMM:NF044772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HGG0859055.1"
                     /translation="MQNQSGFVGIWARFPQYNARGDKVITLADRINGCFERSMNGKRM
                     PSDTPEMKAMLTYMQWLSQGVPVGAKIEG"
     gene            31900..32304
                     /locus_tag="ACJFD7_000205"
     CDS             31900..32304
                     /locus_tag="ACJFD7_000205"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HGG0859056.1"
                     /translation="MLKKGKAIYMDKCAVCHQENGLGLKNEDSTGAYYLYPPLWGDDS
                     YNTGTGMYRLIKAASYIKENMPQGAPDLSLEDAYDVAAYMNSQARPIKANRNKDFPDR
                     KVKPLDMDVGPYDDSFSTTQHRYGPYTNMIKK"
     gene            complement(32339..32980)
                     /gene="dsbA"
                     /locus_tag="ACJFD7_000206"
     CDS             complement(32339..32980)
                     /gene="dsbA"
                     /locus_tag="ACJFD7_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HGG0859057.1"
                     /translation="MRKFFCKFVLTLVFCSSFALANNSFITLNPSLPSSENSVIEAFS
                     YKCIHCYNHHKFGTLEKLREAFPNLHFKLYPVSLMNGEFSKEMNELFAFAQYKDEQNG
                     KDASYSDSLSYKLADVYFVSYFLNKQRNFSNLNEFYDIGLKAMNVNKNEVLNFLNTPK
                     AKEILSEFQRANDIAKTYGTPAFVVNGKYQINPSAINSMQDLEDLVKKLSNMK"
     gene            complement(33064..33234)
                     /locus_tag="ACJFD7_000207"
     CDS             complement(33064..33234)
                     /locus_tag="ACJFD7_000207"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859058.1"
                     /translation="MAFNLSKGVSLGEPKPKIDEFNWGAKEPSVQIQFSGSGTGYQAM
                     PFSVDQAFNPKK"
     gene            complement(33329..33613)
                     /locus_tag="ACJFD7_000208"
     CDS             complement(33329..33613)
                     /locus_tag="ACJFD7_000208"
                     /inference="COORDINATES: protein motif:HMM:NF017722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004062 - aryl sulfotransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
                     /protein_id="HGG0859059.1"
                     /translation="MCDTIIEVDEDGNVVDDWRLYEILDPYRSTIIKTLDQSAVCLNI
                     DASKVGKTLSDEELAKMDESDKFGDIAGIGRNWAHIKGGIKNFKNIYCNL"
     gene            complement(33705..33857)
                     /locus_tag="ACJFD7_000209"
     CDS             complement(33705..33857)
                     /locus_tag="ACJFD7_000209"
                     /inference="COORDINATES: protein motif:HMM:NF017722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859060.1"
                     /translation="MNWGNIYNRGIMISFRQNKDGALTWGFGQRYVKYDVWEEKFSIA
                     NYLLPI"
     gene            complement(34085..34216)
                     /locus_tag="ACJFD7_000210"
     CDS             complement(34085..34216)
                     /locus_tag="ACJFD7_000210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859061.1"
                     /translation="MDFILLIVKVSYTKTANGKSQKVIDEIYKITTPWASIEPSGRH"
     gene            complement(34264..34479)
                     /locus_tag="ACJFD7_000211"
     CDS             complement(34264..34479)
                     /locus_tag="ACJFD7_000211"
                     /inference="COORDINATES: protein motif:HMM:NF036588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase N-terminal
                     domain-containing protein"
                     /protein_id="HGG0859062.1"
                     /translation="MHGILAGSTLLAPNALMAMGGPSGVKIDWQIQGQMGMIKMNPYG
                     LSPLTAIIMNNGYVLSDIKKSNGQTIS"
     gene            complement(34535..35335)
                     /gene="dsbI"
                     /locus_tag="ACJFD7_000212"
     CDS             complement(34535..35335)
                     /gene="dsbI"
                     /locus_tag="ACJFD7_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide oxidoreductase DsbI"
                     /protein_id="HGG0859063.1"
                     /translation="MSYIKMKDNCRNFSLSKWQDTRKPWLILIIVTIGLTCIAHFLFQ
                     EYLFMKPCEQCVYIRFDMLVMAIGGMIALINPANNIIKIFSYSLAFYGIWLGLEHCLT
                     LNHIHEVVHSENPFAGVDGCREIPIYPFNLPLYKWAPSWFLPTGECGMDTPVVPENAY
                     NHLNAFQKFFIGTPPDFENGLYSNGWYLIPSLKFMNMAICCLIAFLCCFVVLFAMFIA
                     YVLDKNKPNAKIFALVIVALVLVLKFIGESKNPNQNIASLNQVVLRYS"
     gene            complement(35332..35994)
                     /locus_tag="ACJFD7_000213"
     CDS             complement(35332..35994)
                     /locus_tag="ACJFD7_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HGG0859064.1"
                     /translation="MKFPVKLARSIVVCAFLAGISASALSEGKEYVILKNPIANADNS
                     LIEIFSYHCTHCYDHHKFNTMGKVKEKLPNLTYKFYPVSSMGDYGRQANEIFAFATFK
                     DGVNKIDPTDKNSLTHKVAEAYFNAYFKKKQRWENGKNPEAFYSVGLKAMNVSKADFE
                     NFLKTPEAAELLKSYEIANPISQNYGTPAFVVNGKYQIVPSAINSPEALVEITKELSK
                     QK"
BASE COUNT        13218 a         4693 c         6096 g        12033 t
ORIGIN      
        1 attcttaatt tttatagtag ttttattgaa aatttttata ggttttgggt aggctgaaac
       61 ttcaatattt tttttattaa aagaaaaaac acaatcttgt aaatttaagt cacaagttag
      121 aggttggcat gtatttaagc taaatatact ttctttcttt ttatcatata atgtataaaa
      181 agctaaaaac aaaatgccta aaaaagacat tcctataaaa aaatttctta tcattataga
      241 caacctttta aaacaagcct ttatgatttg taaaaattat atcataaata aggctgcatt
      301 gttaatataa ttaatatttt ttaagaaaaa aaatattata atcacaaaca tttttgactt
      361 aaaaaatttg aaatacctaa ggaaaaacat tgttaaaacg acttgcttta ttaattgcac
      421 tttcttcatt gatgttgcat gcctcagatc ttgttaaaat ttatcttaat caaggattag
      481 atgctgttgg tgtagcgatt gaaaaagaat taactcaaaa ggatttttgg ttaagtgaaa
      541 taggagataa aaatatttca cttggatact atgatgataa tgttgctatc gtgcttacaa
      601 ataaaacaga taaaattctc cgtgtttatt cttacgagga cggaaaaata agaaaagatt
      661 ttgaacaaaa agaaataata actggattaa tgggtgataa aaaaatagaa ggagatttga
      721 aaacgccagt aggtttttat gagctaggcc ataagtttaa tccaggtgat ccttattatg
      781 gtccctttgc ttttgccaca acttatccaa atttacttga taaagtacaa ggaaaaacag
      841 ggggtggtat ttggatccat ggctatcctt tagatggttc tagacttgat gaatttaaaa
      901 caagagggtg tattgcttta tttaataata atttggagaa atttgcaaaa gttgtgcaag
      961 ataaaaaagt ttttgttatg acagaagaaa aagaaaaaat tagagctaaa aaggatcaaa
     1021 tcgctagttt attggctgat ctttttacat ggaaactagc ttggacaaat agtgacacta
     1081 atgcctattt aagtttttat gatgagcaag aatttaaacg ttttgataaa atgaaatttg
     1141 aacagtttgc ttccatgaaa aaatctattt tttctcgtaa agaagataaa aagattaaat
     1201 tttcagatat taatatcagc ccttatccga atttagaaaa tgaaactatg tatagaattt
     1261 cattttatga ggattattac actaaaaact atcagtttag aggcgataaa attttatacg
     1321 ttaagataga tagtaaaggt aaaatgaaaa ttttagcaga gcaataaatg tctttaataa
     1381 aaattgatca aaaagcttat gaatacaatt taagacatat tgctaaaaaa atagggagtt
     1441 ttcaaagatt aatttgtgtt tttaaagata atgcatatgg acatggagct aagcttttag
     1501 ctccattagc caaaaattta ggagtttctt ttgttgctgt taagagtgaa gaagaagctc
     1561 gagaaatcga agaatttttt gagaatatat taatactatc acatcgtcct catggtaatg
     1621 aaaattctcg atttatttat gctttaaatg acatttctca agtaaaaaat tacaagcaag
     1681 atataaaaat acatctaaaa atagatacag gcatgcatcg caatggaatt tgtgtagaaa
     1741 atttagagca tgctataaat cttattcaag gtagtgattt aaaacttact ggaatgttta
     1801 cacattttgc tagtgcagat gaaatggatg gaagtttttt tgttcaaaaa gaaaattttc
     1861 aaaaagctaa aaagatagta aaaaaatatt tttcaaattt attatttcat tcgtataatt
     1921 ctgcagcatt atttagaggg aaaattcctg aagatgaata ttgtagagtt gggcttgttc
     1981 aatttggata tggggattca aatttaaaaa gagttttaag tttgtatgct catagattaa
     2041 gtcaaaggat tttacaaaaa ggacagagca taggatatgg aggcattttt actactgcaa
     2101 aggatatgga agtagcaact tatgatttgg gttatgctga tggtcttttc cgttacaatg
     2161 gaaaagggga gttggtgctt ggaaatggaa aaacaatgct tggaaagatg tcaatggata
     2221 gtttttcttg tgaaaattct ggtgaggaaa tttgcgtgtt taaagatgct gatatttggg
     2281 ctgatttttt tcatactatt aactatgaaa ttttagtaaa attaaatcct aatattcaaa
     2341 gagttctagt ataaatatgt ttaatatagt tttagttcac cctagaatac cgcaaaatac
     2401 aggtagtata ggtagaatgt gctttaatgc tggttttaaa cttcatattg ttaaaccaac
     2461 tgtttttgat atttcacaaa aggctgttag aagggcagga cttgattact gggataaatt
     2521 agagcctatt atttgggaga atcttgaaga atttttgaat gaaaatatga tttataaaaa
     2581 tcgctttttt ttcgcaacaa ctaagagtca aaaagcttat tttgatgcag aatttcaaaa
     2641 aaatgatttc ttattctttg gaagtgagag ttatggtttg cctatggaat taatgcaatt
     2701 aaactgggaa aatgctataa ctatacctat gaaatcttat ggaagaagtt taaatttagc
     2761 cacaagcgtt ggtataatct cttatgaagc tttaagacaa aattttagaa attttgcttc
     2821 ttaaaagttt caaatttaca caatagctta aaacaaataa aatcataaag tcctttttat
     2881 aaaaattatg ttaaagtaaa atttagatta ttttttgagg agtttggatg aaattagata
     2941 ttatgctaga ttttgccaat aaagcgtctg atattatagc taataagatt gtcccaaata
     3001 cagacattat tatggtagtt ttacttattg tttgtgggct ttattatagt tttttaactc
     3061 gctttgttca gtttcgtatg ttgagttctg tatttaaaat tcttacagaa aaaaacaaag
     3121 gacacgctaa agaacatatt tcaccttttc aagcattaat gatctcaact gcttctagag
     3181 ttggtatagg aaatattgct ggaatttctt tggcattggc tacaggtgga gctggtgctt
     3241 tattttggat gtgggttatg gcattttttg gtggtgcctc agcatttgct gaaagtacct
     3301 tagctcaagt ttacaaatca aaagatgata caggcgggtt taaaggtggt ccagcttatt
     3361 atataaaaaa agccttaggc tcacattttt ttggagcttt ttttgctttt attcttatta
     3421 ttacttatgc ttatggattt aatggacttc aaagtcaaac aatgacttcg tcttttaaag
     3481 tttattatga tatgtttaat ccaaatgctg ctgtagattt tgcatcaagt tcttggccaa
     3541 tgattattgg tattgtttta actatttttg gtgcatggat gtttttttct caccatacta
     3601 aaataggtaa aattagttct ttaattgttc cttttatggc tttagcttat gttttacttg
     3661 ccgtgattgc tgttttaatg aattttgata aaattccttc tgtgattcat atgattttac
     3721 aaagtgcttt tgattttaaa gcgatttttg gtggttttgc tggttctgct ttggttatag
     3781 ggattaaaag aggacttttt tcaaatgaag cgggtatggg ctcggcacct aatgcagctg
     3841 cagcagcttt gacaagtcat ccagctaaac aaggtgttat acaagccttt tcagttttaa
     3901 ttgatgttgt tgtttgtaca agttctggat ttttagttct tttttctatg gcatatttag
     3961 gacttggaga aaataaaatt gatggtggaa tgcctttagt tcaagaagct atgcgtgagt
     4021 attacggtag ctttggaatc cattttatta ctatagctat tgttcttttt gcaataactt
     4081 ctttaatagg aaattattat tatgctcaag ctaatgttaa atatttaaca aattccaaat
     4141 ttgtaatgaa tttgtttaga attacagctg tggctatgat ttttataggc tcgcaaatga
     4201 atttaaaact tgcttggaat ttggctgatt tgactatggc tttcatggca acgacaaata
     4261 ttatatcttt attgctttta ggtggtatag taaataaagt tttaaaagat tttaatacgc
     4321 aacaaaaatc tggtatagat cctaaattta atgctagcaa acttggaatt aaaaacgctg
     4381 aatgttggga ttaaaattca taagccttag tggcttatga attaatgatt taaaaccttg
     4441 tttaaaaatt ctctcaatct ttcattgcta ggattttcaa atacttcttt agggcttgca
     4501 tcaacagcaa tttttccttt atccataaaa aatatacgat tggcaacatt tctagcaaag
     4561 cccatttcat gagttactac aagcatagtt aaaccttctt ttgcaacatc tttcataatg
     4621 cttagaacct cgcctatcat ttcaggatct agagctgaag taggttcatc aaataaaata
     4681 acatcaggat tcatcatcaa gcttctagca atagctatgc gttgtttttg tccaccagag
     4741 agcttatggg gcattatatt ttctttgtct gctaaaccca ccttagcaag aagtaatttt
     4801 gcttttttta tggcttcttc ttgacttaaa attcctgttt taattggtgt taaacataaa
     4861 ttttccataa catttttatt agcaaaaaga ttaaaatgct gaaataccat gctaactttt
     4921 tgcctgatct tattaatatc aatttcttta tcaagtatgt tttgcttatt gattaaaatt
     4981 tccccactat cagctagttc taagcgattg atgcagcgta aaaatgtact ttttccgcct
     5041 ccacttggac ctatgatagc tattacatcg ccttttgaga ttgtagtgtt aatatttttt
     5101 aaaacttcta attctccata ttttttttgt aaatttttaa cttcaatcat ttttattcat
     5161 cctaagttca agtttttttg caaaataact aaaaattttt acacttacat aataaacaag
     5221 tccagtgaaa ataataggct ttggattgta aagtacggct tgcaagcttt gactttgcat
     5281 ggtaatatca ataacgctaa taaatcctac aacagaagtt tccttaaata aagaaataaa
     5341 ttcattagct aatgcaggta gaatgttttt agtagcctga ggaagaataa tttctttcat
     5401 tgaagttttg taatcaagtc ccattgctct tgcagcttcc atttgtcctt tatctacact
     5461 attaatgcca cttcttacaa tttctgctat ataagccgag ctattaagtc ctagtgcaag
     5521 aatggctgca taaaggttgt ctataaaagt aaaaattaca aaagcaaaaa tcatcaattg
     5581 taaaattacc ggtgttcctc gtataatgtc tatatattca tctataataa aattaagtgt
     5641 tttaaattta gagaagcgta aaatagctaa gctaaaacca ataatcactc cgataataac
     5701 agcacaagca gttaataaaa gcgtaataag gtaacttttt aaataagctt ttgcattttc
     5761 tgtatagcca tagcttgcaa ctccactagg atcttgaatt tttaatattt ctatcgggaa
     5821 agaaaaatag ccccataaaa taataataac aaaaaaaaca aaaattctta tatttttctg
     5881 attcaatttg taaacctttt cagagaaatt atttaaaaaa agattttata gaaatatctt
     5941 tgaattttct ctaaagattt aaaaaaatgt gttagaattt cccaaaaata aggttgtatt
     6001 tatggaaatt ttagatttca ttctaatagt tatttttgtg tttttaatga ttgttttggt
     6061 tataggtttc aatcatcaaa tgatgcaaaa aaacaaagaa agagaagaaa gatttaaaaa
     6121 atataaaaaa ggagaacaat aatgagtaaa aaagtattaa ttccattggc tcaaggtttt
     6181 gaagaagctg aatttatagg aattgcggat gttttaaaac gagcaaaaga attaaatcca
     6241 gatttggaag ttgttatagc ttcgttaaac agtgagttat tggtaaaagg tgctaatagc
     6301 attagtataa aagcagattg ttctatagag gatgttgata tagaaaattt agatgctatt
     6361 gctttggcgg gtggctttga aggtatgatg aatcttaaga attcaaatgt tattttaaat
     6421 atcattaaac aacttcatag caaaaataaa attgttgccg caatctgtgc ttctcctata
     6481 gttttaaatg aagcaggtgt tttagagggc gagtttgctt gttatcctag ttgtgaagtt
     6541 ggacttaatg gaaatcgtgt taacaaggct gtagttgtaa ataaaaatgt tataacttca
     6601 gcaggtccag ctacggcaat tctttttggt ttagaactag ctaaaaagtt atgcggtgat
     6661 gaaatttatc aaaaattata tgagggaatg ttgctacctt tgacaaaata gtttaaatgg
     6721 tagtttttct accatttaaa ctaaaataaa gcttgaggat tttctttttt tgttttttcc
     6781 ttaggcagtt caaaacctcc gagcatatga aaatgcaaat gaaaaacttc ttgtccacta
     6841 ttttttccac agtttgttac caagcgatat ccacttttat ctacacctaa aagaacagct
     6901 aattcttgta tgaaacttgt cattttggcc ataagttcag gatcaaattc ttgaaagtct
     6961 ttaaaatatt ttttagggat tataagtata tgtatgggtg ctttgggtgc aatatcatga
     7021 aatgctagaa aatcgtcact ttcaagcact ttattgcatg gaagtttacc ttcaactatg
     7081 agttcaaaaa ttgttttttc ttgcattatt tatccttttt tattgttggt ttgatacaat
     7141 tatatcttta aagtttggtt tttatgctga atttaaaata gtttttaata gaattagaac
     7201 ttgaaatatt ttatttaagg taagaaaatt gcaaaatttt atagaacaga ttcaaaaatg
     7261 tgagaattta aatgatttgg aagccattag gatttccgtt cttggaaaaa aaggtatttt
     7321 aacagaaggc tttacaaagc ttaaagagtt agaagatgag gcgaaaaaag aatttgctgc
     7381 taaattaaat gcacaaaaag aaatatttaa tgaggcttat ttagccaaat ttaaagattt
     7441 ggaaaatctt gctttagaag aaagaatgaa acaagatgct ttaaatttta actattttga
     7501 tgaaagtatt acaacaggtg ccttgcatcc tgttatgagc accatggata aaatcataga
     7561 atattttata gctttgaatt ttagcataga aaaagggcct ttaatagaag atgactttca
     7621 taattttgaa gcgttaaatt tacctaaatc tcaccccgca agagatatgc aagatacctt
     7681 ttattttgat gataaaaggc ttttaagaac acaaacttcg ccagtgcaaa tacggacaat
     7741 gcttgcacaa aaacctccta ttaggatgat agcccctggt gctgtattta gaagagattt
     7801 tgatattacg catactccta tgtttcatca agttgaaggc cttgtggtgg aagaagggca
     7861 aaaggttagc tttgcaaatt taaaaagtgt attggaagat tttttgcgtt atatgtttgg
     7921 agatgtgaaa gttcgttttc gtccaagttt tttcccattt acagaacctt ctgctgaagt
     7981 tgatatttct tgtgtatttt gcaaaggaaa gggttgtaga gtttgcaaac atacaggttg
     8041 gcttgaagtt ttaggatgtg gaatagttga tcctaatgtt tataattttg ttggttatga
     8101 aaatgtaagt ggttatgctt ttggattggg agtagaacgt tttgcaatgc ttttgcatca
     8161 aattccagat ttaagatctt tatttgaagg tgatttgaga ttattggagc agtttagatg
     8221 ataattacta aaagttggtt gaatgattgg ttagaacttg aagaaataag ttcagataaa
     8281 atagctaaaa ctttaaactc tataggtata gaagttgata gggttggcgc tttaaaggct
     8341 ccagataaag ttgttgtagg ctatgttaag gaaaaaatta aacatgaaaa ttcagataaa
     8401 ttaagcattt gtcaagttga tatcggaagt gaaaccttgc aaattgtctg cggtgctgcg
     8461 aatgttgatg caggacaatt tgtagctgtt gcaactaaag gtgctatcat gccaaacggt
     8521 atggaaataa aagaagcaaa attgcgagga gtggattctt gtggtatgct ttgttctagt
     8581 ttagaactgg gttttgaaaa aatcaatgaa ggaattatgc ttttagatga gagtataggg
     8641 aaattagaac ttgggagacc tttaaatact tatgaaattt ttaatgatga gctaatagaa
     8701 gtggaactta ctcctaatag gggtgattgt ttaagtattt atggtatagc tcgtgattta
     8761 gccgcagctt taaatttaaa tttaaaagaa ccaaaaccat ttaaagaaag tgaaaatgtt
     8821 ttaggtatcg gtagaatttt gcgcttagca gctgagaaag aacttaatgg actttataat
     8881 tatcgagcca tagggctaaa agaagaaatt caaacaaatt tattgcttag tttaagactt
     8941 gctcaaattg aaggtttggg aaaaaattcc atagaaaatt tattaaatta tgcaacgcat
     9001 tcaactggtg ttctttttaa tgcttatgat ttaagtagtt tttctgaaaa agatgaagaa
     9061 tttaccatta atttaagcaa gcaagtgcat ggagaaacaa aagtatctta caaagataaa
     9121 cttttaagct ttagcggaat tttccaaaat aatgaaagta gatgtaaaga tgattctaaa
     9181 ataattatta ttgaggctaa ttataccgat ccattggtaa ttgcagatgc taaaatatat
     9241 cataaagatc aagatgaaaa aatgctttat agaagtttta ggggaagtga acctaaatta
     9301 aatttaggaa tggatttttt gcttagtatt tttgagcaga ttccaaatct tgttatttat
     9361 agttcttctc aacaaatttt aaccgacaaa gaattaccaa tcataccaat aagtattgaa
     9421 ggtattagcg atataatagg gcaaaatgtt gataaagatg aagtattaaa aatattaaag
     9481 aaattaggtt ttgagctcat actttcaggt gaagggctta taaatgttaa agcaccttta
     9541 catcgtcctg atattaaaaa tttatcagat atttgcgagg aagttgtaag aattataggt
     9601 attgataata ttgcctccaa gggtttagaa tttatagaaa aaaatcgttt aaattctgca
     9661 tataaaaatt atattgaatt tttaaattta aggaaaagag cagtagctag tggttatttt
     9721 gaaagcttac attacgtttt ggataatgaa gaagaactta aaagattggg ttttgactct
     9781 gttaaactaa aactaatcaa tccaattaca gcagaactta atactttaag aacaaccctt
     9841 ttaaatcatt tgttaaatgc agcaagttta aatgcaaaaa attctaaaaa aattattaaa
     9901 ctttttgaac taggggctgt tttcaatgtt aataatcaag aattaaacca tatcgcattt
     9961 atccattctg gcttaaaaga agaagctaaa atttccaaca aggcaaaacc tgaatcggtg
    10021 caattttatg attttctttt agacattaaa aatattatag gtgattttaa actaaaatca
    10081 tcaaaatata atattttaag cccttatgaa caagcagata tttatctatc agatattaaa
    10141 gtaggtttta taggccgttt gcatttaaaa atagaaaatg agagagattt accaaaaaca
    10201 tatatttgcg aacttgattt agatttaatc aggcaagatt ttaaaatagc taagccttac
    10261 tccaaattcc cagctatcac tagagatctt agtgtgttaa tacctaaagg ttttgaatac
    10321 aatcagatta aaaattgtat cgaagaattg aatttagaaa tacttgaaaa ttttcgttta
    10381 gttgatattt atagtgatga aaaccttaaa gaattttata gcattactat aagtttttct
    10441 tttagggata taaataaaac tctagaagat aatcaagtaa atgaatgtat ggataaaatt
    10501 ttaaatactc ttaaaaattt gggtcttgat ttaagatgaa aatttacaaa ttgcaaaccc
    10561 ctgtaaatgc tatacttgaa aatatagcag cagataaaag catatctcat cgttttgcta
    10621 tattttcgct tttaacacaa gaagaaaata aggctcaaaa ttatctctta gctcaagata
    10681 ctttaaacac tcttgaaatt ataaaaaatc ttggagctaa aattgaacaa aaagattctt
    10741 gcgtcaaaat tataccccct aaagaaattt tatctccaaa ttgtatttta gactgtggaa
    10801 attcaggaac tgctatgcgt ttgatgatag gatttttagc aggaatttct ggtttttttg
    10861 ttttaagtgg agataagtat ttaaacaatc gtcctatgag aaggataagc aaaccactta
    10921 ctcaaatagg cgctagaatt tatggaagaa atgaggcaaa tttagctcca ctttgcatag
    10981 aaggtcaaaa tttaaaagct tttaactata aaagcgaaat ttcttcggct caagttaaaa
    11041 cagctatgat tttatctgct tttagagctg ataatgtatg cacttttagt gaaatttctc
    11101 ttagtcgaaa tcatagtgaa aacatgttaa aggctatgaa agctccaata agggttagca
    11161 atgatggctt aagtcttgaa ataagtcctt taaaaaaacc tttaaaagct caaaatataa
    11221 tcattcctaa tgatccttct tcggcttttt attttgcttt agcagctatt attttgccta
    11281 aatctcaaat tattttaaaa aatattttac ttaatcctac tcgtatagag gcgtataaaa
    11341 ttttgcaaaa aatgggtgcc aaacttgaaa tgacaataac tcaaaatgat tttgaaacta
    11401 ttggtgagat cagggtggag tctagcaagc ttaatggcat agaagttaaa gataatatcg
    11461 cttggttgat agatgaagcg cctgctttgg ctatagcttt tgctttggct aagggtaaat
    11521 ctagtttaat aaatgctaaa gaattacgcg ttaaagaaag cgataggatt gctgtgatgg
    11581 ttgaaaatct aaagctttgt ggtgttgaag ctagagaact tgatgatggt tttgaaatag
    11641 aaggtgaatg cgaactaaaa tcttcaaaaa ttaaaagcta tggagatcac cgtattgcta
    11701 tgagttttgc tattttaggt ttgctttgtg gaattgagat tgatgatagt gattgtataa
    11761 aaacttcttt tccaaatttt atagagattt tatcaaattt aggagctagg attgattatt
    11821 gaattagcaa aaaactatgg tttttgtttt ggtgttaaaa gagctattaa aaaagcagaa
    11881 caaataaaag atgccgcaac tataggccct cttattcata ataacgaaga aatttctcgt
    11941 ttgcaaaaaa attttaatgt caaaactttg gaaaatatac aagctttaag taatgaaaaa
    12001 aaggctatta taagaactca tggtattaca aagcaagatt tagaagaatt gagaaaaaaa
    12061 gatatagaaa tttttgatgc cacttgtcct tttgttacaa aaccacaaca aatttgcgag
    12121 caaatgagta aggagggtta tgaagttgtt atttttggag atgaaaatca tcccgaagtt
    12181 aaaggagtca aaagttatgt aagtacaaaa gcttatgtag ttttggataa aaaagaactt
    12241 caaaatataa aacttcctaa taaaatagct gtagtaagcc aaacaactaa gaagcctgag
    12301 cattttatgg agatagtaaa ttttttaata cttaaaacca aagaagtaag agtttttaac
    12361 actatatgtg atgcaacctt taaaaatcaa gatgccatta aagaactctc gcttaaaagt
    12421 gatgttatgg ttgttgtagg gggtaaaaac tcagccaata caaaacaact ttttttaatt
    12481 gcaaaaacca attgtgaaga tagctatcta attgaaaccg aagaagagtt aaaaaaagaa
    12541 tggtttttgg ataaaaaaca ttgcggcatt agtgcaggtg ctagtactcc tgattggatc
    12601 atacaaaaag ttatcgccaa aataaaaaaa tttaaaatta attaaaaaat gttttcaaat
    12661 agaataaaaa agtcaaaaat ttaaaaaaaa ttaacaaaaa taaaaaaact taacactaat
    12721 taaagaaaaa taaggtaaaa tcaatcaatt tctaaaaatt attttaaagg accataatga
    12781 gcgaggtgaa caaaaaagtt caaggcggcg tagatgatta tcttgaggaa gaagattttg
    12841 gacagctttt agaagctttt gataaatcaa gagaagaggc tacaacagag ggtgtgattg
    12901 tagagatcaa aaatgatgaa gtttatgtag atataggtaa aaaatctgaa ggtattttag
    12961 ctcttagtga aatacaagat gacaattcta agctattatt taatgtaggc gatggtatta
    13021 aagttgctgt tatgggttct cgtggtggca gatctttact ttctcataaa aaagctttga
    13081 gaaaagaaaa agttatcgaa tttattaaaa actatcaaga aaatcaagat gatattttta
    13141 ccgtaaaagt agttggaaaa aataaaggcg gattgatagt tgttgatgaa aataatgttg
    13201 aatttttctt accaaaatct caatatggct tcaaagaaac aaataatatt ataggcaaaa
    13261 cgtttaaagt taaaattatt aaaatcgaca aagatgagca aagtatcatt gtttctcgta
    13321 aaaaaacttt agatgacgag agaagaaaac gcaaagaatt gatcaataat gtagcacaac
    13381 aagaagattt aattgaaggt attgtgaaaa aaattactac ttatggtatg tttgtggatg
    13441 taggaggtgt tgatggtctt gttcattaca gcgaaatttc ttacaaagga cctgtaaatc
    13501 ctggaacact ttataaagag ggtgataagg ttccagttaa agttataaag tatgataaag
    13561 aacgcaaaca tttatccttg tctataaaag cggctttacc cgatccatgg agcgagataa
    13621 aagatactct tgatgtaggt gataccatta aagtaatagt atcaaatata gagccttatg
    13681 gtgcttttgt ggatttagga aatgatatag aaggattttt acatatcagt gaaatttctt
    13741 gggataaaaa tattaaaaat ccaaaagatt atatcaacaa aggtcaagaa attgatgttg
    13801 aagtaattga aatcaatcca aatgaaagac gcttaagagt ttctttaaga aatttacttt
    13861 ctagaccttt tgatgaattt atgaaatctt acaaaattgc ggatgtggtt gaaggagaaa
    13921 ttacctcggt aacttctttt ggtgcgtttg ttaaacttgg cggtattgaa ggtctattgc
    13981 ataatgaaga tgcttcttgg gatagaaacg ataaatgtaa agacaaattc tctcaagggg
    14041 ataaaatcaa ggtaaaaatt atcaaaatag atgaagaaaa ccaaaaaata tcattaagca
    14101 caaaagaatt aaacagttct ccagtgcaag aatatgccaa aattcataaa gtcggcgata
    14161 ttgtaaaagg cactatccgt gatattaaag attttggtgt ttttgtagag ctaagtaaaa
    14221 atgttgatgc tttaattcat aaagaagata taagcacttc tatgcttgaa aatttaaaaa
    14281 ttggcgacga tattgaagct gctatagttt ttattgatga aaagaaaaat agaattcgcc
    14341 taagtgttaa aaatcttgtt agaatgaaag aaagagaagt tcttaatgaa atcaataatg
    14401 atgataaagt gactttaggt gatatcatta aagatcagtt agcttaatga aaaaatacat
    14461 tacaataagc attttgagta ttttattact cattttgctt gctgttgttt ttacattgct
    14521 ttggcaattt aaagctaatg taaatttcat tccacaattt gctaaagata caaatacaca
    14581 gccaagcatt caaacccaaa atcaagatct ttcatggcaa gaagaattag caaaatggcc
    14641 tacaagagat tttaccccag cagcagaaaa atttacctta tattttgatg cggatactag
    14701 cgagcttaag gagaaaaata aatattatca acttatagtt ggaaaatatg atatttattc
    14761 tatgttttgc ttaagacaga ctttaaattc ttttaatgtg aagtattttc ttcttaaatc
    14821 aggtgatagt ccagaaatct ttttggatac aggtaatgaa aaacttatag atgatattat
    14881 caaagaatta aaaaaatata aaataaatac agaagtaaag gaaatttggt tatgaaaaaa
    14941 aagattatag tgtgtgatgc tattttggat aaaggtgtcg atattctaag aaaagctgaa
    15001 gatattgagc ttatagaagc tgcaaaattt ccaaaagatg aacttatgca aatgctaagc
    15061 gatgttgaag ttgcgattac tagaagttct acggatgtag atgtaaattt tttaaatcat
    15121 gccaaaaaat taaaagcgct tgtgcgtgct ggggtgggcg tagataatgt tgatattcta
    15181 gagtgttcta aacgaggagt gattgtgatg aatgtcccaa ctgcaaatac tattgccgca
    15241 gttgaactaa caatggcaca tcttttaaca tcagctagaa gctttgtcaa tgctcataat
    15301 tttttaaaaa ttgaaagaaa atgggaaaga gaaaaatggt atggtattga attgatgaat
    15361 aaaacgctag gggttatagg ttttggaaat ataggttcaa gagtagctat ccgtgctaaa
    15421 gcatttggta tgaaaatttt agcctatgat ccgtatattt ctgcttctaa gattacagat
    15481 ttagatatgg agcaagcaaa aaatttggat gaaattttag aaaaaagtga ttttattacc
    15541 attcacacac caaaaaccaa agaaaccaat ggtatgatag gaaagcaaga aattgcaaaa
    15601 atgaaagatg gaataagatt aataaattgt gctcgcggag gattatacac agaagaggct
    15661 ttatatgaag gtttaaaaag tggtaaaata gcatggcttg gtatagatgt gttcgataaa
    15721 gaacccgcga ccaatcatcc tcttttagac tttgaaaata tttcagttac ttctcaccta
    15781 ggagcaaata ctttagaaag tcaagacaat atcgcaagag aagcttgtga gcaagcatta
    15841 agtgcagcac gaggcgtggc ttatcctaat gccttaaatt taccaattaa aactgaagac
    15901 ttaccacctt ttgtagctcc ttatatagaa cttgtttcta aaatggcttt tttagctgtt
    15961 caaattgata aaaatcctat aaaaagtatt aaattagagg ctgaaggaat tattggtgag
    16021 tatgcaaatt ctatgctaac ttttgcagct gttggtgctt tgggtggaat tttaggagag
    16081 aaaattaatt atgttaatgc agaatttgtt gccaaagaaa aaggagttga attatcttgc
    16141 gaaactcttc caaatagtgg ttataataat aaacttagcg ttaaaattat caccgaaaat
    16201 tcaaatatca gtgtttcagg aacagtgttt aatgaaaatg aacaacgcat agttggatta
    16261 aatggcttta aaactgattt taagccaaag ggaaaaatga ttatttttaa aaacaaagac
    16321 ataccaggag ttatagctaa aatcagttcc gttttggcag ctaaaaatat caacatagct
    16381 gattttaggc ttggtagaga tggttttggg tatgctttgg ctgttgtttt gattgatgaa
    16441 aaagttcaaa aagaagtatt agatgaacta aaacaattag aggcgtgtgt atttgtccaa
    16501 tatgttgaaa tttaaaattt taattataga agatgatata gatttaaacg aactgcttgt
    16561 tttaaagtta aaatctagtg gttatgaagt tatatcttta gcggattttt ttggagttga
    16621 agatttgctc gataatgagc aaattgatct tttaatagtc gatagaaatt tgcccagtgg
    16681 agattcttta gaaaaaattc aagatttaag agagcaagga tataaagaag cagttatttt
    16741 tcttacagcc aaggctttac atcaagattt actcgaaggc tttgaaagtg gttgtgatga
    16801 ttatgtttgc aaaccttttg atttcaatga gcttttgctt cgcattaaag caattttaaa
    16861 acgccataaa aaagaagaag aaaaactatc ttttggtgat tttattttag atttggttag
    16921 ttatgaattc ttttacaaaa atcaaaaatt agaaatctca aatcttgact atgagctttt
    16981 aaaatgtttt tttgaaaatc caaatacctt gcttactaga caatttttaa gcgaaagtgt
    17041 ttggaaagat gatactacaa gtgataaaac aatcaatata gctctaacaa gacttagaaa
    17101 taaatttcca aaactaaaag atcatattat aagtgttagg ggtattggct ataaattatg
    17161 ctaaaaacta aaaatatttt tatagttttt tttgttgtat tggctttgat ttttgggttt
    17221 attttttata cttttactaa ttcttatctt aatttcttgc ttataaaaca atatgaacaa
    17281 aaaatcaaaa gccttgatga tgttttaaaa ttttctctct tagagcattt aaatgatgct
    17341 aatatcaagg attttgctaa agatactagg gctgatttta ttatcctaaa caatgatatg
    17401 aaaataagtt ctgtaaaaaa tcctgatttt ttttctaatc ttaaagaagg agaaatttta
    17461 aatttcaatt caaaaaaaat tctcactaaa agctttattt acaaaggata taaatatatt
    17521 attattgttt atcctcgttt tttagattta gaactttttt ggacaaaaat ggcaatcggt
    17581 tttggagtat gcttgctgtt tgtttttatt ttaatgttgt tgttaggtag aagaatagag
    17641 aaaaatttta ataaaatttt ggattttttg gattctatag gggatcataa agttgttata
    17701 ttagaaaaag gaatgtttaa agaatttaat ttactaaatg agaaactttt aaaaaccaag
    17761 gataaaattc taaagaatac ccaaaaaaat aaaaaacaaa gcgataaaat cactttaaaa
    17821 aatactcagc ttgctagcgt gatttctgct atttctcatg agcttaaaaa tccattaagc
    17881 gtgattgatc ttagcttaga gatgctaaaa gatgagaaat tggaagataa aaaattaaaa
    17941 aaggaattac tagaaaaaat ttcacgtcaa agcgttaaac ttaatgcttt aacccataag
    18001 cttaattttg tttttaatct taatagtgaa gccttgcaga tgcaagaatt tgatcttttt
    18061 tctctatgtg aaaaaatcac taaaaaccca ggctttgaaa gagttgcatt gcaaggtaaa
    18121 agcacgaaag ttaaggctga tgaattttta atcgagcaag tgattataaa tttgctttct
    18181 aatgctttaa aatatagtca aaaagaagtc attttaatgg caagagatca aaagataata
    18241 gtgcaagatt ttggaaaagg tatagaagaa gataaaataa aattgattac aaaaaaattt
    18301 tataaaattg atgtaaaaag tgataattct tttggtttgg gacttttttt agtaaagaaa
    18361 attttaaata tacataaaag ttatcttgaa atttctagca ctttaggtta tggttctagt
    18421 tttagcttta aactcagtca aggataaaaa atggctctta tagatttaat tgaagcttca
    18481 aaaaaatttg gagacaaaat agttttaaat gaagtaaatt ttagcgcaaa cgagggagaa
    18541 aagattgcta ttataggcaa aaatggagaa ggaaaatcta cttttttaaa aacgctttta
    18601 ggcacacttc ctttagatag cggtagaata ataagacaaa atggaaaaag catagccatg
    18661 ctttcacaaa ccgttgattt taatgcaaat ttaagcgtaa aagaagccat caagcaagag
    18721 cttgtagaaa tttacaatac cttagaagaa tatgaaatac tgcataaaaa attagaagaa
    18781 gatcctagta ataaagatta tcttcaaaaa atcgatacgc ttatgacttt gattgatagt
    18841 aaagatgctt ggagtataga atctaaaata atacgcgttt taaaagaatt tagtttactt
    18901 gagtatgaaa atcgcattat atctacttta agtggtggag aaatacgccg cgttgggctt
    18961 tgcatacttt tactaaaaaa tcctgatatt ttattgcttg atgaaccaac taatcattta
    19021 gatgtatata tgacaagctt tttggaagaa ttgctaaaaa attcaaagat gtgtgtgatt
    19081 tttatttccc atgatagata ttttattgac gctatagcac acaagtgtgt agaagtagag
    19141 cagggtaagc ttagtatttt taaaggcgga tatgcaaact atttagagaa aaaaacacaa
    19201 attttgcaaa gccttgctaa gagccatgaa actcttttaa agcaattaaa aagcgaagaa
    19261 gaatggctta gaagaggggt taaagcaaga cttaaaagaa atgaaggacg aaaagaacgc
    19321 atttttaaaa tgcgtgaaga agcgaaaaaa aatcctgggg taatcaaacg cttaaaactt
    19381 gaaatttcaa gagcggcttt aaattttaat ggagaaaaaa cgatcaatcg taaaaaaatg
    19441 ctttttgagc ttaaaaatat aagcaaaaat ataaacaata aaaatctttt taaagatttt
    19501 tcaacgcgta ttttacaagg tgaacgtata gctatcgtag gaagaaatgg ttgtggaaaa
    19561 tcgacattgt taaaaattct tctagggcaa ataaaacaag attgtggtga aataaaacgc
    19621 ggagagctta agataggata ttttgatcag gctagaagct tggtaaattc tgataaaagc
    19681 ttgcttgaaa ttttttgtcc caatggtgga gatagggttg aagttcgtgg taaaaatatg
    19741 catgtttatg gatatttgaa aaatttttta tttcctaagg aatttttaga taaaagcgta
    19801 gctcttttaa gcggtggaga gaaaaatcgc gttgctttag ccttgctttt tactaaagaa
    19861 tatgatgttt tgattttaga tgagccaact aatgatcttg atatagctac gattaatata
    19921 ttagaagaat acttacttag ttttgaaggg gctattttgc tagtatcaca cgatagatat
    19981 tttgttgata aaatcgcaac aaaactttat gcttttgagg gaaatggata tataaatatt
    20041 ttacacactc tttatactga atatcttgaa aatgaaaaag aaattgaaga attggataat
    20101 tttgctttag agcttcaaac ccaagagcaa aataataacc aaaaagaaaa aagctccaaa
    20161 aaattgagct acaaagaaaa tgagatatta aaaaaccatc ctgaaaaaat agatttttta
    20221 gagcaaaaga tagctaaatt aaatcaagat ttatccgatc caaatgtata tcaagaaata
    20281 ggtattaaca agctttatca agagcttgaa gtaatgcaaa aagaacttga aattctagaa
    20341 aatgagtatt ttttagtatt agagaaaagc gagaatttat aattaaagag attttatatt
    20401 ttttattcta tggagcggga aacgagattc gaacccgcga ccccaacctt ggcaaggttg
    20461 tgctctaccc ctgagctatt cccgcaaaaa ataagtggtg cccgaggtcg gactcgaacc
    20521 gacacaaggt tgcccttacc agattttgag tctggcgcgt ctaccagttt caccactcgg
    20581 gctcattttt aagatttaaa gctaaaatta tactttttta ggctaaaaaa tactttaaaa
    20641 taaaaagtat tttcaaaaag acaatataaa attatataat ttaaattttt ggaacagtta
    20701 ttgcttttgt ttattagcaa tgtttgaaaa gattttaact ttaatacttt agaggaaaaa
    20761 aatgagaatt acaaataaac ttaacttcac aaatagtgtg aataattcta tgggcggtca
    20821 aagtgcttta tatcagatat ctcaacaact tgcttcaggt ttgaaaatac aaaattcata
    20881 tgaagatgca agcacttata tagataatac gcgtcttgaa tatgaaatta aaacgttaga
    20941 acaagtaaaa gaatcaacaa gtagagctca agaaatgact caaaatagta tgaaagcttt
    21001 acaagatatg gttaagcttc ttgaagattt taaagttaaa gtaacccaag ctgcaagcga
    21061 tagcaattct caaacctcaa gagaagctat agcaaaagaa ctagaacgta taaaagaaag
    21121 catagttcag cttgcaaata ccagtgttaa tggtcagtat ctttttgcag gttctcaagt
    21181 tgcaaacaaa ccttttgatt ctaatggaaa ttattatgga gataaaaata atattaatgt
    21241 agtaactgga gctggaactg aaagcccata caatatacca ggttgggatt tattttttaa
    21301 agcagatgga gactataaaa aacaaataag cactaatgtt agttttacag ataatcgttg
    21361 ggatttaaat aaagaccctg ataaaactaa atatctcaca ggagattcta aatggcaaca
    21421 acttatcgga caaggttatg taaaagataa tagcttagat gctgacaaag actttgagta
    21481 tgatgatagc aaactagatt ttcctccaac aactctttat gttcaaggaa ccaagcctga
    21541 tggaacaagt tttaaaagtg ctgtactcgt caaacccgaa gatactttag aagatgtaat
    21601 ggaaaatatt ggagctcttt atggtaatac tccaaataat aaagtagtag aagtaagtat
    21661 gaatgatagt ggtcaaattc aaattacaga tctaaagcaa ggtaataata aactcgattt
    21721 tcatgctgta gctttcacac cacaagctga taccaaagat gaacttaaaa atattattga
    21781 agctgctaat caagagggta tttcaatgaa tgaagttaca aatagggtta tgcaagctgc
    21841 tacggctgct cctagtaatg gagatataac aaaattaaac aaccctgtaa ctgtaacaat
    21901 caacaatcaa caattcacaa tcgatttaaa acaaactgat tttatcaaaa gtaaaatgac
    21961 agatacagat ggaaatgctg ctaatgaagc tgattacgat aatgtgtatt ttgaaaaaaa
    22021 tggcaatact gtttatggta atgtttctca agttatcaaa ggaagcaatg cttatgccac
    22081 tgattcaacc aaacttagcg aggtaatggc aggagatagc ctaaatggta ctactttaaa
    22141 tttaaaagtc aattccaaag gtggaaattc ttacgatgtt actataaatt tacaaacttc
    22201 aactgtaagc tatcctgatc ctaataatcc aggtcaaacc ataagctttc ctattatgca
    22261 tactaatcct gcaactggaa atagtggggt tgttacagga tcaaatgata ttacttatgg
    22321 tcaaattaat gatattatag gtatgtttgc tgcagataaa attcctacaa caaccataca
    22381 agccaataat ggtcaaatta ataatgcaga ttatacccaa atacaacaac tcatgaaaga
    22441 ttcacaagct actgttgatg taagtatgga ttataaaggt cgtattagtg ttactgataa
    22501 actttcttca ggcactaata tagaaatttc tcttagtgat tctcaaagtg gccaatttcc
    22561 agcacctcct tttaccacaa cttctactgt acaaaatggt ccaaatttta gttttagcgc
    22621 gaataattct ttaactatag atgagccaaa tgtggatatt attaaagatt tagattcaat
    22681 gattgatgct gttttaaaag gcaatatgag agcagactcc gaaagtgaaa accctagaaa
    22741 tacaggtatg caaggagctt tagaaagact tgatcattta gcagatcatg ttagcaagct
    22801 taatacaact atgggagcat atcataatac tatcgaaggt gttaatacac gcacatcctt
    22861 tttaagcgtt aatgtccaaa gtataaaatc aaatgtgatt gatgtagatt atggtgaggc
    22921 aatgatgaat ttaatgcaag ttcaacttgc atatcaagct tctcttaaag ctagtacaac
    22981 aatttctcaa cttagcttat taaattatat gtaaaatttt ttatggtata atttggcttt
    23041 gattttattt tcaaggaaag aatattaaaa aagaagccat ttttaccagc tccacgcttg
    23101 ttatttttta tctttgtctt tgtatgctag cacctggcat gggagaatgg gtttacaagg
    23161 ctaatttatt tttatttgga gaatttgggt attattatcc attttctttg cttatattaa
    23221 attatctcta ctataaaaaa aaatataaaa tagaaaattt taagcgtagg gagctttttg
    23281 gtttttcttt ggcctttttt tctgccttgc ttttattttc tgtcttttat agagagtttg
    23341 ggtatatttt agaaattgta tatggatttt tttctataat cttagggcgt acagggagtg
    23401 gaatttttgc tcttttactt ctactatttt ctttggtttt attgtttcca aaatttgcaa
    23461 aagaaatttt aaaaatagaa ttagatttta cttatttatt aaaaatagag caagctttta
    23521 aatctttact tatgcgtgta tttggtggag aaaacgagaa agaagatgta ggtaaatcag
    23581 aacctatagc tccaaaatta aatattttgc aagatagtat ttatggaaat ttacaaataa
    23641 acaaaaaagg ggaaaccaat aacttagaac agataattaa agatagcaat atcaatgcaa
    23701 gtaaaaattc aattaccacg gccaaggaaa attttgaaaa actaaaaaat caaattttag
    23761 atgaaaccat agagattgat aaacaaagtt taaaagaatc aagaagtttt gtttatgagc
    23821 attctcaaca agtgcgaaat ttcgcacaaa aggctagtaa aatgagcatt agtcttgatg
    23881 aagattttaa ttttatttca gaagaagagg tagatatgat tcctgaacgt tttttaaaac
    23941 ctaaaaaact tgaagatata aagcaaatag atacaaataa aaatttagat gagccaagtt
    24001 ataaacgtaa aaatattgaa attccagttt ctaatcaaga agttaaacca aaaattttta
    24061 caaaagagct tgaacttaga gagaatttga taaaaaaaga aaaactagaa caagaataca
    24121 aagcctatca aaatgaaatt ttagaaaata aagtaaaaca agaaattaaa aaattagaag
    24181 aatatgatgc gataaattca agcgatatta tagaagggaa taaatatagt tttaatagcc
    24241 caaaaacaat taaaacagaa acagaagaat cagacaaaat aaatgaaaat aaaaatctag
    24301 ataaagcaga caatatcttt aaatttgctc ccattgtaga agagttaaat catccttata
    24361 tagaacctac tcctataaaa aatataaatg aaatagttat agaagaaaaa aatacactcg
    24421 attttatcca aaatacagaa actaaaatcg ataatgaaaa aacaaatgat caagaaatta
    24481 aacttcaaaa agcagtttta gccaaagaaa ttgctattaa ccaagcttta ttgcgtgaaa
    24541 tagagcaggg cgaagtagaa aaaccaaaag atttcacctt gccgccatta gattttttag
    24601 ctaatccaaa agaacacaaa caagaaatca atgaaagtga aatagataaa aaaatttata
    24661 atcttcttga aaaattgcgt cgttttaaaa taggcggcga tgttataagc acttatgttg
    24721 gtcctgtggt aactactttt gaatttcgtc ctagtgcaga tgtgaaagta agtcgtattt
    24781 taaatttaca agatgattta actatggctt taatggcaaa atcaatccgt attcaagctc
    24841 caataccagg aaaagatgtt gtaggtatag aagttccaaa tgatgaaatt caaaccattt
    24901 atttaagaga aattttacaa agtgaagttt ttaaaaacgc taaaagtcct ttaaccatag
    24961 ctttaggtaa agatatagta ggcaatgctt ttgtaaccga tcttaaaaaa cttccgcatt
    25021 tactcatcgc aggaacgaca ggtagtggta aaagtgtggg gataaattct atgcttttaa
    25081 gtcttttata tcgcaactct ccaaaaacct tgcgtttgat gatgatagat cctaagatgc
    25141 ttgaatttag catttataat gacattcctc atcttttaac tcctgttatc acagatccaa
    25201 aaaaagcagt caatgcgctt tcaaatatgg tagctgaaat ggaaagacgc tatcgcttaa
    25261 tggctgatgc aaaaaccaaa aatatagaaa actacaatga aaaaatgaaa gaattaggcg
    25321 gagaagaact tccttttatt gtagtaatta tcgatgaact tgctgatttg atgatgactg
    25381 cgggtaaaga tgtagaattt tatataggaa gacttgcgca aatggcaaga gcaagtggaa
    25441 tccacttgat tgtagctaca caacgacctt ctgttgatgt tgtaacagga ctaattaaag
    25501 cgaatttacc aagtagaatt tcttataaag tagggcaaaa aattgactct aaagttattt
    25561 tagatgctat gggtgctgaa agtttacttg gaagagggga ttgtttattt actcctcctg
    25621 gaacaagctc tatagtgcgt ttgcatgcgc cttttgcaag cgaatttgaa atagaaaaaa
    25681 tcgtggattt tctaaaggat caacaaagcg tagaatatga tgaaagcttt ttaaaggatc
    25741 aacaaagcgt aggtgttaca acaaatgaaa gctttgatgg ggaagtagat gagctttatg
    25801 aagaagctaa aagagtaatc ttagaagatg gaaaaacaag catttcttat ttacaacgcc
    25861 gtttaaaaat cggctataac cgctctgcaa atattattga acaacttacg caaaacggga
    25921 ttttaagcga acctgatgcc aaaggacaaa gggaaatctt gtaagatttt tcttgtgttt
    25981 ttgatatata aaactgatta caaaagaaga aatttaaaag gcaaaagccc cgtaaaaagg
    26041 gcttaaaaat tatttatctc taagatttaa ttcagtaatt aacttactat aagaattata
    26101 atcttttctt ttaagataag ataaaagtct ttttctttga cctacaagtt ttagaagtcc
    26161 taatcttgat gaaaagtctt ttttgtagat ttttaaatgt tctgtaagtt ctgcaattct
    26221 tgcagttaaa agagctactt gaacttctgt tgaaccagta tcacctggtt ttttagcgaa
    26281 tttcgcaact atttctgctt ttttggccga atccaaagcc atgatagacc tcctgattgg
    26341 taaaataata aaattaaaga actgtaattt tatcttaaaa agcaaaaaat aaactgaatt
    26401 tatctttttt agaaggtttt gtcaaaattt aagtcttttt ctaagaatta tttattataa
    26461 ttacagctat ttctgtagtt ataacaagga gaatctgtgc tatttaccaa agctagcgaa
    26521 tacgctttac tttctttaat ttatatttct caaaaagaaa cacctcaaga tgtagattct
    26581 ttagctttag agcttgatat tcctaaaagt tttttagcta aaattttaca aactttagct
    26641 aaagatggct tgttaaaatc ctttaaaggg gcaaaaggtg gttttgtttt aatcaaagaa
    26701 ccaagtcaat atactataaa agaaattgtt aatagtgctg aaaaaaagga tatcagtgta
    26761 tttgaatgca gtggtggcac ttgtccaaat aataaagaag aaaattgcac cttaatgcct
    26821 atgttagtaa atttacaaaa taaagtagat gaatttttag attctattac tttagaagat
    26881 attatgaaaa ataatggcaa aaaataaaat agtcgattta gtttttcctt tcttggggcc
    26941 tttaatcgct cctgttttaa aagctaaaag cttgactatt gttggttttt tagtttgtat
    27001 tttagctatt attatagttc ctttaccaag tcctattttg gactttttct tggctttaag
    27061 tatagcttta tcggtattaa ttattttaat ttctatttat atacccaaac cgacagattt
    27121 aacaactttt ccaactttaa tcttgattat cactttattt aggctttcat taaatatagc
    27181 taccacaagg atgattttaa gcgaagggca aaacggccct gaggctgtga gtgagattat
    27241 agcagcattt ggagaatttg ttgttggtgg aaatatggtc attggcgtga ttgtattttg
    27301 tattttagta ttgattaatt tcatggttgt aacaaaaggt agtacaaggg tttctgaagt
    27361 acaagcaaga tttacacttg atgcgatgcc gggtaaacaa atggctattg atgcggattt
    27421 aaatgcagga cttattgatg aacaaaccgc tagagcaaga cgtcaagaag ttattgctga
    27481 ggcaaacttc tatggtgcaa tggatggttc ttctaaattt atcaaaggag atgctgttgc
    27541 aggaattatc ataactatta taaatatcat aggtggtttt ttaataggat cttttcagca
    27601 cgatatggct ttaagcgatg ctgcttctac ctatactatt ttaaccatag gtgatggact
    27661 tgtatctcaa attccagggc ttattacttc tactgcaacc gctataatta tcactcgtgc
    27721 aagcaaagat gaggaaaatt ttgcagaagg aactttaact caacttttaa gcgaatatcg
    27781 cacgctttta atagtaggtt ttgtactttt tatctttgcg ttagtgcctg gtttgccaac
    27841 tttatccttg ggctttatgg ctttagtatt tttaagcctt ggctatctta ccaagcaggt
    27901 taaggaaggt aaaattgata taactacagt taaaaaaagc aaaccaagtg ccgcagctgc
    27961 atctcaaagt ggagcaggtg ggacaacggc agcgcctgct aagaaaagcg aagaagaaat
    28021 tctcaaagaa gaagagcaca agattaacga tatactcaaa gttgaaattt tagaacttga
    28081 acttggatac ggacttatta agcttgctga aaacgaactt acagaaagaa ttcgctcaat
    28141 gagaagaagt attgctgaaa gtttaggatt tttaatgcca aaaataagaa taagagataa
    28201 tttaagactt aaaccaaatg agtatagttt taaactcaag ggcgtgtcta tagcaagtgc
    28261 tgaaatttat ccggataaat atttagccat ggatagtggt tttatcacag aagagataga
    28321 agggattgct acaaaagaac ccgcttttaa ctctgatgcg ctttggattg atgcgaattt
    28381 aaaagatgaa gcaacattaa atggctatat agtaatagat cctgcaagtg ttatttcaac
    28441 acatatgagc gaacttatca aagcgcacgc aagcgaactt ctcacacgcc aagaggtaca
    28501 aaatcttctt gataaggtta aaaatgatta tccaatcatc gtagaaggtg ctttaggtgt
    28561 tgcatctgta agtcttattc aaaaaattct caaagacttg cttaagcatc acataccaat
    28621 taaagatatg cttactattt tagaatctgt aagcgatata gcagaagtaa gcaagagttt
    28681 tgatatgatt attgaacatg taagggcgtc cttggctagg atgattacaa atatgtattt
    28741 agatgataaa ggaaatttgg atatttttat cttagactct gctagttctg cggttttaat
    28801 ggaaaatgta caatttagag atggaagtta tcacttgcct ttaagtgtag ctcaaacagg
    28861 tactttagta gatactctaa gggctgaagt tgccgcagta gcaaatggtc gtatcaagcc
    28921 ttttatactt tgcgttgaac cgcagcttag aaaattcatt gctgatattt gttataattt
    28981 tagcattaat atagtagtgt taagttttgc agaaattgca gaaaatacaa attttaatac
    29041 cgagggtatt attaggatag aactttaagg aatataatga aaatttatca tctttcacat
    29101 acagatcttg atggctatgc ttgtcaattt atagtaaatt tttattttaa aaatgtgaaa
    29161 ttttataatt ctaattatgg caaagaaatt aatgaaaatt ttaactctat tataggcgat
    29221 atagaaaaag atgaaaattt cggaaaagct attattctaa taacagattt aaatttaaat
    29281 ttaaatcaat gcgaagaatt tgaaaaaatt tgcaaagaga aaaatactaa aatttttctt
    29341 cttgatcatc atcaaagtgg cgaagaatgt gctcaaaaat attcttggta tttacttgat
    29401 tctaaaagat gtgcaactaa aatcgtttat gattttttct ctaaaatctg tactcctgtt
    29461 ttagaacttt caaaatttgt tgatgtggtt aatgctgttg atatttggct aagcgaggat
    29521 gaaaattttg aacttggaaa ggttttttta ggcttgattg ccaatgcaaa agaaataaat
    29581 cgtgtaatgt ttaaagaatc tcaaattgat tatatgtttt tcttgcttga taaggcttgg
    29641 aaatttatag gaaaagaaaa tgcaaatatt ttactcgata atgctactca ttttataaaa
    29701 aaggattatt ttgccagaaa aaatgatgat actctttcta atttaatttc ttattttgta
    29761 gttgaaaaac taagtgagct aaaagaaaat ttcagcatag aatatgaagg ccataaaggc
    29821 atcttaactt caaatatagg caatacttct gttattggaa atgatttttt agtaaaaaat
    29881 cctgattatg acttttttat tgatgttagt tctagaaaaa ccttaagttt tcgtgcaaat
    29941 ggaaaaatag atgtaagttt aatggctaaa aatttagtag gtggtggcgg acataaaaat
    30001 gctagtggtg gactttttgc gacatttaaa gatggagcaa attataatta tattaaggct
    30061 caaattattg atttaattaa aagcaaagaa cttaaaaagg aaaacaatga atcaaaacaa
    30121 taataaaacc ttaaaaaatg aattagaaga tttacaatat gagcttagca tagttttaga
    30181 agctatgctt ttatacgctg gagttaaaag agaaaaatta gaaaatgcaa tagaagctta
    30241 tattgataat atagataatg tactcgaaaa ttccgacaaa gaaggggttg atgaaatttt
    30301 agaagtggtg gaatttctaa aaaataaata caaagatttt ttttcaatga aaaagtatat
    30361 tttaattttt tttagtttat attctttaag ttttgctaat atttatgaaa aattaaatga
    30421 ttttgcttat gaaaaaaaac cgaataaaga ttttaagatt caagaagtta aattagtgca
    30481 attttcacaa gaaaataaag attgccttga acttttaata gaagccagtc aagttagaat
    30541 tttaaatagc tataattctt gtcaaaaatt atctaaagat gaaagttttc aaaaatttct
    30601 taatgaagat tttttaaaac tttataaaaa taatggatat ttgattaatg aaaatttaca
    30661 aaatttgaaa aataccatgc aggatattat gatatattat aaactccgat attcttttag
    30721 taaagatgta aaagatatga gtaaaaataa gaatttggat attttaaata tagatgaaaa
    30781 agatggtggc actttacttt acaaaatcaa caatcaagct tgtgttggaa tagaacttac
    30841 aagacatgac tcaagaatgg ctatgaaaat atacgggata gaaaatttgg ataaagagtg
    30901 caaactattt atccaatcac cttcttttaa agatctttcc tacacaaaaa aggattttaa
    30961 gtggtattat ttagaataaa taaatgcttt aatttttaaa taaaaatttt taaaaaccac
    31021 acttaaagta aaagtatctt gccttccaag attttgaaaa acgcagttgt ctaagtcttt
    31081 tttttcttga atgcttaaat ttttcattaa cctaaccttt aaaaatattg caagatttta
    31141 ttatagcgaa aaaactttat ttttgcttta aatatataag ttctatttta aatataaacg
    31201 aatattattt taaggtttaa agcttttttc ttaaaatgta attaggtttt attgactttt
    31261 tctaaataaa gtcttatact gaatttaaat tacgcaaaat aaggagggaa attgatgaat
    31321 aaattttcta tagttttaac tttgttgtta tgtggaagtt gtgctttagc cttagatcca
    31381 aatttggaaa aaactaagag tgcaacaggt attgatctgc ctactgccaa atggaattta
    31441 cctaaggaat taaatgaaga tggcactata gatgaaacta aaatgccaaa aaaattcaga
    31501 atatggcaaa atggttattt tgggaaataa aattcttaat aaaacaagca aatatgtggg
    31561 tccacaagcc aaagatccta aaaaaaagat ttgcgggaaa taatctttct tgttcaagct
    31621 gtcatgctaa tggtggaagt gtgcaaaatc aatcgggttt tgtaggaatt tgggcaagat
    31681 ttccacaata taatgcaaga ggagataaag taattacctt agcagatagg atcaatggct
    31741 gttttgaacg ctctatgaat ggcaaaagaa tgcctagtga tacacctgaa atgaaagcca
    31801 tgctaactta tatgcaatgg ttatctcaag gagttccagt aggagctaag atagaaggat
    31861 agggacttaa gaagatagat ttcatcttaa gagcagctga tcctaaaaaa aggtaaggca
    31921 atttatatgg ataaatgtgc cgtttgtcat caagaaaatg gcttagggct taaaaatgag
    31981 gatagcacag gggcgtatta tctttatcca ccactttggg gtgatgatag ttataataca
    32041 ggaactggaa tgtatcgtct tatcaaagct gcttcttata ttaaagaaaa tatgcctcaa
    32101 ggtgcgcctg acttaagtct tgaagatgct tatgatgtag cagcttacat gaattcacaa
    32161 gctcgtccta ttaaagcaaa tagaaataaa gactttccag atagaaaggt taagccttta
    32221 gatatggatg taggacctta tgatgatagc ttttctacaa cccaacatcg ctatggacct
    32281 tatacaaata tgatcaaaaa ataattttta aggcaatttt tattgcctta aaaatttatt
    32341 atttcatatt acttaatttt ttaactagat cttctaaatc ttgcatcgaa ttgattgcac
    32401 ttgggttaat ttgatatttt ccattaacaa caaaagcagg ggtgccatag gttttagcta
    32461 tatcattagc tctttgaaac tcgcttaaaa tttctttagc ttttggggta tttaaaaaat
    32521 ttaatacttc atttttattt acattcatag cctttaaacc tatgtcgtaa aattcattta
    32581 aatttgaaaa atttctttgc ttgtttaaaa aataagaaac aaaataaaca tcagcaagtt
    32641 tataagataa actatcagaa taactcgcgt ctttaccatt ttgttcatct ttgtattgag
    32701 caaaggcaaa aagctcattc atttctttgg aaaattcccc attcattaaa cttacaggat
    32761 agagtttaaa atgtaaattt ggaaaagctt ctctcagttt ttcaagggtt ccaaatttat
    32821 gatgattgta acaatgtata catttataag aaaatgcttc tattacacta ttttcagagc
    32881 taggtaaact tggattaaga gtaataaaac tattatttgc taatgcaaaa cttgaacaaa
    32941 atacaagcgt taaaacaaat ttgcaaaaaa atttacgcat attatatcct tggttaaata
    33001 aaattttcaa agataatttt atttaaaaaa aataaataaa cccaaaaata aatttgggct
    33061 tatttatttt ttaggattga atgcttgatc aacactaaaa ggcattgctt gataacccgt
    33121 gcctgaaccg ctgaattgaa tttgaaccga aggctcctta gcgccccagt taaattcatc
    33181 aattttaggt tttggttctc caagacttac acctttacta agattaaaag ccattccagc
    33241 gttgcactat aaaccataat agaatcttta tctggttcat attgagttaa agaagttaca
    33301 ggataaaacc attcattgtc atttttatct acaggttgca ataaatattt ttgaaattct
    33361 ttattccacc ctttatatgc gcccaattcc tacctatacc tgctatatct ccaaatttgt
    33421 cgctttcatc cattttggca agctcttcat cgcttaaagt tttacccact ttacttgcat
    33481 ctatatttaa acacactgca ctttgatcta aagttttgat aatagtactt ctataaggat
    33541 ctaaaatctc atacaatctc caatcatcaa caacattacc atcctcatct acttctataa
    33601 tagtatcaca cactgtgcgt acatgcttac tatcttggac gcaaagtatt tgttgaagaa
    33661 ataatgccca ttttttgcat attgtccata gcatgagaaa aaatctatat aggcagcagg
    33721 taatttgcga ttgaaaattt ctcttcccag acatcgtatt ttacatatct ttgaccaaat
    33781 ccccaagtta aagctccatc tttgttttga cgaaaactta tcataattcc acgattgtaa
    33841 atattacccc agttcattag tttattgtta tcataatacc atctgatttc acccttggta
    33901 tcttataata aagacatttg aattttcatc ccattccata gcaccaccta caagattatt
    33961 ccatacagat tatgagtctt tgccagatta ttttccagga gcattattta ctaaatatag
    34021 cctatctgaa aattttggat ccatttttaa tactttcaca ttttcaaaaa gagttcctct
    34081 ttgatcagtg ccttccgctt ggttctatgc tagcccatgg agttgtaatt ttataaatct
    34141 catcaatgac tttttgactt ttaccatttg cggttttagt ataacttacc tttactataa
    34201 gaaggataaa gtccaaaaat aggaattcca ccatacgtct tagccatttt agaattcaca
    34261 ttattaagaa atagtttgac catttgattt ttttatatcg cttaagacat aaccattatt
    34321 catgataata gcggtcaaag gagacaatcc ataaggattc attttaatca tacccatttg
    34381 tccttgaatt tgccaatcta ttttcactcc actaggacca cccatggcca ttaaagcatt
    34441 aggtgcaagt agggtagaac ccgccaaaat tccatgcaaa gagttttgct aagtctcatg
    34501 atcaatcctt taaaattatt taagacatcc tattttaaga gtatcttaaa acgacttgat
    34561 ttaaactagc tatattttga ttcggatttt ttgattcgcc tataaattta agcaccaaaa
    34621 ccaaagcaac aatcaccaat gcaaaaattt tagcattagg tttattttta tctaaaacat
    34681 aggctataaa cattgcaaaa agcacgacaa aacaacataa aaatgctata agacagcaga
    34741 ttgccatatt cataaacttt aaactaggaa tcaaatacca accattacta taaagcccat
    34801 tttcaaaatc aggtggagtt cctataaaaa atttttgaaa agcattaaga tgattataag
    34861 cattttctgg aactacaggg gtatccatcc cgcattctcc tgttggcaaa aaccaactag
    34921 gagcccattt atacaaaggt aaattaaatg gataaatagg aatttcacga catccatcta
    34981 cgcctgcaaa aggattttca gaatgaacca cttcatggat atgatttaaa gttagacaat
    35041 gctccaagcc aagccaaatt ccataaaaag ctaagctata agaaaaaatt tttataatat
    35101 tatttgcagg gttgattaat gcaatcatac cacctatagc cataacaagc atatcaaatc
    35161 ttatatacac acattgttca caaggtttca taaaaagata ttcttgaaat aaaaaatgtg
    35221 ctatacaagt aagccctata gtaactataa tcaaaatcaa ccaaggtttg cgcgtatctt
    35281 gccatttgga aagtgaaaaa tttctgcaat tatctttcat ttttatataa ctcatttttg
    35341 cttgctaagt tctttagtaa tttcaaccaa agcctctgga gagttgattg cacttggaac
    35401 gatttgatat tttccattaa caacaaaagc aggggtgcca taattttgcg aaatagggtt
    35461 ggcaatttca taacttttta aaagctctgc agcctctgga gtttttaaga aattttcaaa
    35521 atcagcttta cttacattca ttgcttttaa accgacacta taaaaagctt caggattttt
    35581 accattttcc catctttgtt ttttcttaaa atatgcatta aaataagctt cagcaacttt
    35641 atgagttaag ctatttttat ccgtaggatc aattttattt acaccatcct taaatgtcgc
    35701 aaaagcaaaa atttcattag cttgccttcc ataatctccc atagaactta caggataaaa
    35761 tttataagtt aaattaggta atttttcttt aactttaccc atggtattaa atttgtgatg
    35821 atcataacaa tgagtacagt gataagaaaa aatttcaatc aatgaattat cagcgttagc
    35881 aataggattt ttaagaatta catattcttt accttcactt aatgcgctag cacttatacc
    35941 tgctaaaaaa gcacatacaa caatagatct tgctaatttt actggaaatt tcattaccct
    36001 ctccttgaaa tttggttttg ataaaacttt ttattaagtt
//
LOCUS       DBBXPZ010000006        33313 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.006, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000006 DBBXPZ010000000
VERSION     DBBXPZ010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 33313)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 33313)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..33313
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.006"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            42..971
                     /locus_tag="ACJFD7_000214"
     CDS             42..971
                     /locus_tag="ACJFD7_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2860 family protein"
                     /protein_id="HGG0859065.1"
                     /translation="MKKYLFSCVLASILTQSATAVEFQEGFSGNLSIGVGARDIKSNI
                     STLANSDYLSSHNADNSDSSFIPFIGVELYYGDLIDNDRIFIKNYNGRDISGIALGYE
                     RAYLERFSTSFSVISSLREKAYANPYATGNREETDVDRYGFKISQLYESDFGKFTTSY
                     LFSKNKYNKDTIAQSSLKREGYYHEFELNYNYSLLNLGLNYDYNDADGKAQSYSRYGF
                     SIGTNLAFANDYIFTPNLNLSKYEAVGTDPIFHKKQDGNIVKLNLKVVKNQFLGYNGL
                     YGFANYGIEKRNSDIGFYDETYQIVLTGIGYKF"
     gene            complement(1019..2347)
                     /locus_tag="ACJFD7_000215"
     CDS             complement(1019..2347)
                     /locus_tag="ACJFD7_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HGG0859066.1"
                     /translation="MSSIFSTLSPFRLFVKCAVPNVISMAFISFYYIVDGIFVGKYLG
                     SDALAALALIIPFIMMSFALADMIAIGSAVQISMHLGLGKKNLARKIFSSSMLIIFII
                     SCFIGILEYFLGPVLIDCLNVSDEIKTMAKECMFVFALFAPFTMLSFALDNYLRICGK
                     TAYSMVMNVIIALSNIVLDYIFIVELGRGLFSAALATCLGLVLGGIFGIFPFLFQNLE
                     LKISSLYMNLKIFKNILYNGSSEFFGNISGSLYSIFANFVLLKISDTQAVAAFSIVLY
                     IDSFIIMLIIAMGDAMQPALSYNYAKKDFSRIKAIVKVVFFAGGFLSLFSIVLILIFG
                     ENLITLFTKENNQEFKTFAYTALMLFAFNYFFAWFNVLSGSFLTAFNKASFSLVLSLA
                     QNLFIPLFFLLFLSCFMGLNGVWLSPFFAEFCVLILAWIFLKRIFKDLSL"
     gene            complement(2528..3463)
                     /locus_tag="ACJFD7_000216"
     CDS             complement(2528..3463)
                     /locus_tag="ACJFD7_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HGG0859067.1"
                     /translation="MKKIDLIVVGAGPTGIGCAVEAKLKNKEVLILEKSNNICQTLMQ
                     FYKDGKRVDKAYKGCEGTNHGHVPFEDGTKESTIETFQNALKEHNIEVEFGSEVESVK
                     NENGVFLVSTAKGVYECKNIIVAIGRMGKPNKPDYKLPMTLTKIINFNANSVLGNEKI
                     LVVGGGNSAAEYAVDLANSNQVSLCYRKKEFTRLNDINLKDIHEAGNSGKVELKLGID
                     INEVEDDNGKAKVNFTDGTSDIYDRIIYAIGGSTPLDFLQKCGINVDDKGVPLMDKNK
                     QSNVKGIFVAGDIATKNGASIVTGLNDAVKILSVL"
     gene            3534..4766
                     /locus_tag="ACJFD7_000217"
     CDS             3534..4766
                     /locus_tag="ACJFD7_000217"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004350 - glutamate-5-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HGG0859068.1"
                     /translation="MRNLLENIKKNSQKLLNLTPKDKEKIILKLAQILRENFKIILEA
                     NKKDMANFTKSGAMKDRLLLDEKRILALCEGLEKIAYIEDPIGKISKGWKNYAGLNIQ
                     KISIPLGLICVIYEARPSLSAEIAALMIKSSNACVFKGGSEAKFTNEAIFTLVNKVLK
                     EFDLQDCFAMFTQRDEILQILAFDDLIDVIIPRGSSNMIQEIANNTKIPLIKQNKGLC
                     HAFVDQSANLDMALKIILNAKCQRVSVCNALETLLIHEKIAKNFISLLIPEFEKFKVK
                     IHAHENALAYFNNSNLEIFKANENTFDTEWLDFALSVKLVKDCDEAIEHINKHSSLHS
                     ETIISNDASNIAKFQRLINSSCIYANASTRFSDGGEFGFGGEVGISTSKLHARGPMGI
                     EDICTYKYIINGEGQIRE"
     gene            4763..5848
                     /locus_tag="ACJFD7_000218"
     CDS             4763..5848
                     /locus_tag="ACJFD7_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HGG0859069.1"
                     /translation="MNKIEILKQHFKEIAKLNSSEQVWQMPFFAALGVGIVLGLSVFF
                     GKLNYGLIAMIGALSFLYVPNTPLYHRMAVVMCCSFGIVSSFFLGILTHFLPAIFAFI
                     PIGIMAMGSSILIRYYNIGAPGYFFFVFSCVLGAYSPFEAKDFIFLVGLVFLGAMVAN
                     LMALLYSIVVIYGFKNALPSEIPPREYIGFDAVFVDSLIMGSFVAFSIFIGTFLELER
                     SYWIAISCTAIMQGVTLNSIWIKQIQRIIGTALGVCFAWWLLSKQFHDIELILLMMSL
                     FFIGQFLVNRNYALAMIFFTPYATYLSEAANFMSENADKLILARLIDVVIGSILGLLG
                     GFVIYKPYLRVHFERIAKYIFRIKQKA"
     gene            complement(5845..6642)
                     /locus_tag="ACJFD7_000219"
     CDS             complement(5845..6642)
                     /locus_tag="ACJFD7_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HGG0859070.1"
                     /translation="MKIDTHAHIFLKKLNTVANARYKPDYDASFKDYKANLDHYDFDK
                     GILVQPSFLGVDNEFLLQSIEKDKNIKAIVVVDENIKFDELKKLKERKACGVRLNLIG
                     KELPNFKSMVWTQFFENLSKLKMQIEIQRDLDNNLVDIVENLIPYGCNIVIDHLARAN
                     ANLTNLEDLICLKNSRIFFKISGFYRAKIDYANNEQAVKFAKKIYEILKEHFPLSNFV
                     FGSDWPHTNFESNVNFSSALVAFNEVVVSKKEQEQILGDNACALFGF"
     gene            complement(6653..7945)
                     /locus_tag="ACJFD7_000220"
     CDS             complement(6653..7945)
                     /locus_tag="ACJFD7_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HGG0859071.1"
                     /translation="MIMVFLIISSIIVAIILGYITRHNVGIFAMIFAYIIGAFFMDLA
                     PKKIIAFWPISIFFVIFAVSLFYNFATVNRTLEKLAGHLMYRFANHPYLLPFVIFVVS
                     AIIAALGAGFYTVLAFMAPLTFLLCDKIGLSKIAGAMAINYGALGGANFMTSQSGIIF
                     RGLMENSGIEANEAFVNSSIIFAFTIILPIVVLSFFVFNAFKNNIKISVILKPDPFDY
                     KQKTTLILMFMMIVVVLIFPVLNIIFPHNETISYFNKKIDIAMIAMIFVAIALFLKLA
                     DEKQVVALIPWGTLIMICGVGMLISIAVEAGVIKLFSDLVENEINVIFIPLIMCAIAA
                     FMSLFSSTLGVVTPALFPIVPSIAASSGLSEALLFSCIVVGAQASAISPFSSGGSLIL
                     GSCPNKYKEKLFKDLLIKAVPIGFIAAILATIIMSFIL"
     gene            complement(8064..9068)
                     /locus_tag="ACJFD7_000221"
     CDS             complement(8064..9068)
                     /locus_tag="ACJFD7_000221"
                     /inference="COORDINATES: protein motif:HMM:NF022646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HGG0859072.1"
                     /translation="MEKFIKQFSFIALENIFRELPNKITHSFNDINDIKPPKLMYPIF
                     YGSYDWHSSVHSHWLLVKILKDFSHFAPKDEIIKALDSQFSKEKAEGELKYLQNPAHK
                     GFERPYGWGWFLKLTLEINLLAKENDKAEIWAKNLEGIADFFVKEFKEFLPKMDYPIR
                     VGTHFNSSFALYFALEYARFKKDQELEYCIIQSAKKWFLNDKNMQALEPCGDEFLSPV
                     LMEAVLLSAVLHKNDFVKFFKAYLPNLEAKEPATLFTPVSVSDRSDGKIAHLDGLNLS
                     RAWCFKILSNFCDENLKILLRNNATEHFDKAIAHIEDDYLGSHWLGSFALLALDVDIL
                     "
     gene            complement(9078..10031)
                     /locus_tag="ACJFD7_000222"
     CDS             complement(9078..10031)
                     /locus_tag="ACJFD7_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HGG0859073.1"
                     /translation="MISLDLLYYIVGILFLVFGILSFSNQAKDIKSRISGGVFWISYS
                     FTFLLAGVLPHFVMGCIVILLALIAGFNLLKPAKIEVSKEEKEYEIKHANIYKNKLFI
                     PALMVPLITLIGTFLFPHLSFFENKNATLMALIIGIIISSIVACFMFKASPKRAVKDA
                     AHTMDHISWAALLPQILATLGVVFVSTGMGDQVSKLLSSYISLDNAFIAVAVYCIAMA
                     LFTIVMGNAFAAFPVITAAIALPILIIQMHANPAIIGAIGMLSGFCGTLMTPMAANFN
                     IVPAALLNLDDKNGVIKAQFMSGLVLLVANIFLMYFLAFRF"
     gene            complement(10018..10710)
                     /locus_tag="ACJFD7_000223"
     CDS             complement(10018..10710)
                     /locus_tag="ACJFD7_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 domain-containing protein"
                     /protein_id="HGG0859074.1"
                     /translation="MEWLLLASIPLIVLGFALKINPFLVVTSVGIYAGLVSGFDFVKV
                     VSDIGKSFVDNRYVAIIWLILPLLAVLERKGLREQAKNLISKIKVASTGRILMCYFVF
                     RQVTAALGLLSLGGHAQMIRPLIAPMAEAAAKLKFKNLTHKDSQKIKAFSAGTDNVAV
                     FFGEDIFIAVHSILFIKAFYESNGIIVEPLHLSVWAIPTGILALIIHCSRLYLFDKRL
                     EKTYKGLSDDKS"
     gene            complement(10870..11439)
                     /gene="efp"
                     /locus_tag="ACJFD7_000224"
     CDS             complement(10870..11439)
                     /gene="efp"
                     /locus_tag="ACJFD7_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HGG0859075.1"
                     /translation="MASYSMGDLKKGLKIEIDGIPFKIVEYQHVKPGKGPAFVRIKIK
                     SFIDGKVLEKTFHAGDKCEAPNLEDKTMQYLYDDGENCQFMDTQTYEQVAISDDDVGE
                     AKKWMLDGMMVDVLFHNGKAIGVEVPQVVELKIIETAPNFKGDTQGSNKKPATLETGA
                     VVQIPFHVLEGEVIRVDTVRGEYIERANK"
     gene            11553..11873
                     /gene="rnpB"
                     /locus_tag="ACJFD7_000225"
     ncRNA           11553..11873
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="ACJFD7_000225"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(11871..12146)
                     /locus_tag="ACJFD7_000226"
     CDS             complement(11871..12146)
                     /locus_tag="ACJFD7_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859076.1"
                     /translation="MKQWLSDFKLALIQEDVNKLENLLDELDMKAFIKNLAKESPSED
                     FLKENANDVFYQVQALLQEAVILIEQKKKTKAVEIQKFQKALTYFKS"
     gene            complement(12127..12513)
                     /gene="fliS"
                     /locus_tag="ACJFD7_000227"
     CDS             complement(12127..12513)
                     /gene="fliS"
                     /locus_tag="ACJFD7_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HGG0859077.1"
                     /translation="MQNNLAYNAYSQNQVGIESPQKLIEMLYEGILRFCARAKVAIRN
                     EDIEQRVYFVKRTTAIFIELINTLNYEKGGEVAHYLSGLYTREIQLLSLANLENNEDR
                     INEVINVTKGLLEAWREVHNNETVAQ"
     gene            complement(12525..14453)
                     /gene="fliD"
                     /locus_tag="ACJFD7_000228"
     CDS             complement(12525..14453)
                     /gene="fliD"
                     /locus_tag="ACJFD7_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009421 - bacterial-type flagellum
                     filament cap [Evidence IEA];
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HGG0859078.1"
                     /translation="MAFGSLSSLGFGSGVLTQDTIDKLKEAEQKARIDPYTKKIEENT
                     TKQKDLTEIKTKLLSFQTAVSSLADATVFAKRKVVGSISDNPPASLTVNSGVALQSMN
                     INVTQLAQKDVYQSKGLANDSGFVNAQLNGTADLTFFSNGKEYTVTVDKNTTYRDLAD
                     KINEASGGEIVAKIVNTGEKGTPYRLTLTSKETGEDSAISFYAGKKDSNGQYQSDSEA
                     ENIFSNLGWELDKTSSIDPAKDKKGYGIKDASLHIQTAQNAEFTLDGIKMFRSSNTVT
                     DLGVGMTLTLNKTGEINFDVQQDFEGVTKAMQDLVDAYNDLVTNLNAATDYNSETGTK
                     GTLQGISEVNSIRSSILADLFDSQVVDGTTEDANGNKVNTKVMLSMQDFGLSLNDAGT
                     LSFDSSKFEQKVKEDPDSTESFFSNITKYEDINHTGEVIKTGSLSKYLNSNGGNTNGL
                     EFKPGDFTIVFNNQTYDLSKNSDGTNFKLTGKTEEELLQNLANHINSKGIEGLKVKVE
                     SYNQNNVTGFRLNFSGDGSSDFSIKGDANILKELGLSDVNITSKPIEGKGIFSKLKAT
                     LQEMTGKDGSITKYDESLTNDIKSLNTSKDSTQAMIDTRYDTMANQWLQYESILNKLN
                     QQLNTVTNMINAANNSNN"
     gene            complement(14456..14821)
                     /locus_tag="ACJFD7_000229"
     CDS             complement(14456..14821)
                     /locus_tag="ACJFD7_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlaG family protein"
                     /protein_id="HGG0859079.1"
                     /translation="MEISKANGQMDTALANISQRTSETQASLNIQTDRSQGQEGDDGQ
                     QRGVSEKLADITKKLNEQMDSLDTNVRFGYSDKIGSMYISVTEKSTGREIRQIPSEEA
                     MRLAEYFRDVIGMIFDKES"
     gene            complement(14978..16780)
                     /locus_tag="ACJFD7_000230"
     CDS             complement(14978..16780)
                     /locus_tag="ACJFD7_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HGG0859080.1"
                     /translation="MKEFIQILKENDLLRVIEEPVDVDLEIAHLAYIEAKKGEKGKAL
                     LFKNPIDKKLNKQYKFPVLMNTFCNEKALNLAFGCDYEEVAEEISKLTKLHIPTSFKA
                     KMDFFMNLLSFKNIPPKRLKKNKALYDYEILNSLEELPILKTWEDDAGKFITMGQVYT
                     QNLDKTQNNLGMYRLQMSDKNELLMHWQIHKDGANFYHEYKNAGFKKMPVSIAIGGDP
                     LYIWCSQAPLPKGIFELLLYGFIKKTPAKITPCENGIFIPYDSDVVIEGYVDLEEFKI
                     EGPFGDHTGFYTPAELFPVMKVEKIYAKKDAIYQATVVGKPPLEDKIMGLGTERIFLP
                     LLQTSVPDLIDYNMPENGVFHNLILAKIDAKYPAHAQQIMHAFWGVGQMSFVKHAIFV
                     DKNAPSLKDYDALIPYMLDRFNTKKILISEGICDQLDHASPNSCFGGKAGLDACEEIQ
                     VEELEILEDEKLLELFKTKVELLNLKQFYKESKSPIVCILLDKKEKIEQSFDKLLEFK
                     KHFRILVFLDVENKLENSYMLVWRVVNNIDAKRDIFIKEERLGVDASAKGEAEGYLRA
                     WPKQTDCTKSVIEDLILRNILENNPDLFNKFEIF"
     gene            complement(16777..17700)
                     /gene="hemC"
                     /locus_tag="ACJFD7_000231"
     CDS             complement(16777..17700)
                     /gene="hemC"
                     /locus_tag="ACJFD7_000231"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HGG0859081.1"
                     /translation="MKLIIATRKSQLALWQSEHVAQILKNTHQIEVLLEGFKTKGDVL
                     LDSPLAKIGGKGLFTKELEESMLRKEAHLAVHSLKDVPSFFPQGLVLAAVSKREQSND
                     AMLSQNYKDFLSLPKGAKIGTTSLRRKMQLLLLRPDLDIISLRGNVNSRIEKLKNNDF
                     DAIILAMAGIKRLNLDKQVNFVYEFSKDELIPAASQGALGIESINDEKILELLKCLND
                     ENALIETSIEREFIATLEGGCQVPIGINAELLGDEICVRAVLGLPDGSEILKDKRMIK
                     KNDFKGFGESLAKEFIAKGAKELLKKAESMI"
     gene            complement(17697..18086)
                     /gene="fxsA"
                     /locus_tag="ACJFD7_000232"
     CDS             complement(17697..18086)
                     /gene="fxsA"
                     /locus_tag="ACJFD7_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family membrane protein"
                     /protein_id="HGG0859082.1"
                     /translation="MNYKLSLSPLFVLEIIASILFIVFFGFGNFLFFILLSMIFGAVL
                     LGIFWKNMLEFQMGGLKDMLTQFSFVIAGFLLVFPGIITSVFGIFVFFFGIALKLITK
                     SKYQYTKQEYQNSNEEIIDVEIIEDRK"
     gene            complement(18083..19792)
                     /locus_tag="ACJFD7_000233"
     CDS             complement(18083..19792)
                     /locus_tag="ACJFD7_000233"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HGG0859083.1"
                     /translation="MMRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFL
                     PLGKRVLDKIKNIVKEEMDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKE
                     NEFVLGPTHEEAMLSLVKNKITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKD
                     GYSFHANEEDLGREFELMYKTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNG
                     EDDILICENCDYAANVEAAKRAKKTCQDERPEANYASKFHTPNIKIIDSLAQFFKINA
                     FYTIKAVVKKAIYENESKLVVFFIRGSDDLQEVKAQNACSALELVDASEEELEKAGLV
                     AGFIGFVGLKDIDFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKE
                     GDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSR
                     LLAVAIEANHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLL
                     DDRNERFGVKMNDFELMGFPYALVIGKGLENNEIELIQREDLVKELIKTDELMEILKK
                     KVL"
     gene            complement(19776..21074)
                     /gene="hemA"
                     /locus_tag="ACJFD7_000234"
     CDS             complement(19776..21074)
                     /gene="hemA"
                     /locus_tag="ACJFD7_000234"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HGG0859084.1"
                     /translation="MYYCISFTHKNTDIALREKLSFSNEAKKSEFLKIISTHENIEEC
                     LVISTCNRVEIVAFVKMACAEFIVKSLALLCDVDKDILLEKADIFEDSGAIHHLFSVA
                     SSLDSLVVGETQIAGQLKDAFAFAVKNNFCGVHLSRAVHSAFKCAAKVRNETQISKNS
                     ISVASVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAGAKVIILNRDLQKAKDL
                     CERLGVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLVEELSYRRYFFDIAVPR
                     DIDINENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRETSEFFRYLNDLALMP
                     IIKAIRLQAKEYADKQLEIALKKGYLKKSDKEEARKLIHQVFKAFLHTPTVNLKHLQG
                     KMQSDTVINAMRYVFDLQNNLEGLNQYKCEFDMENNDEIY"
     gene            complement(21074..21967)
                     /locus_tag="ACJFD7_000235"
     CDS             complement(21074..21967)
                     /locus_tag="ACJFD7_000235"
                     /EC_number="2.5.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexaprenyl-diphosphate synthase"
                     /protein_id="HGG0859085.1"
                     /translation="MQKIDELIKQFLQELGYEPILNMLSNVKSGKKLRSKLLLAIADE
                     SEIAFKICAAIELIHLASLLHDDIIDESELRRGARSVNAEFGTKNALMLGDILYSKAF
                     YELSKMDARFASIISDAVVKLAIGELMDVDLGEKFNINKEAYLKMIYNKTAVLIEASA
                     RCGAILAGLYEKDFAEYGKNLGLAFQMIDDILDIKSDEKILGKPAMNDFKEGKTTLPY
                     IYLYENLQEQDRIYLQTLFKKDLNENEKEWLKTKFEEQKALEKAILEAKTYAKKARKA
                     IEKYDNNKLNDIIKAMIDREF"
     gene            complement(21981..22517)
                     /locus_tag="ACJFD7_000236"
     CDS             complement(21981..22517)
                     /locus_tag="ACJFD7_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exporting protein"
                     /protein_id="HGG0859086.1"
                     /translation="MFKISPCLICIFFIFSNVLASEPTFDYTYKFILKKDERASVQIK
                     EIGYEDKVQNFDFYWTLFDNTNIIVHSKFRKYPRQFVMSLRRNLDWVTQTLIPDYTNP
                     HIDRARLILEFSGYNKGLATFTVYIEDKESRLMVEFLDPRKKALQNPPQNNQVVPMIN
                     FNEPQVKPLTSKENNNSN"
     gene            complement(22520..22783)
                     /locus_tag="ACJFD7_000237"
     CDS             complement(22520..22783)
                     /locus_tag="ACJFD7_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2018 family protein"
                     /protein_id="HGG0859087.1"
                     /translation="MDFFDEMFNKTPKEKFIEIIQNGNLGALEKVFEEFFADHIAMVE
                     LLEKQGLIEMDVKNFILENGDFIEERQNDIYIELGAKILGHEG"
     gene            complement(22922..23479)
                     /locus_tag="ACJFD7_000238"
     CDS             complement(22922..23479)
                     /locus_tag="ACJFD7_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016903 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HGG0859088.1"
                     /translation="MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVR
                     GGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHP
                     ESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVP
                     AKTRDANAKAFDLGVKYATQAKPYS"
     gene            complement(23476..24321)
                     /locus_tag="ACJFD7_000239"
     CDS             complement(23476..24321)
                     /locus_tag="ACJFD7_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HGG0859089.1"
                     /translation="MAFNYDEYLRVDKMPTQWCWGCGDGVVLKCIIRAIEKLGWNMDD
                     VCLVSGIGCSGRMSSYVNCNTVHTTHGRAIAYATGIKLANPSKHVIVVSGDGDTLAIG
                     GNHTIHGCRRNIDLTHIVINNFIYGLTNSQTSPTTPKGFYTVTAQFGNIDPNFDACEL
                     TKAAGASFVARGNVIEANKLENLIYKALAHKGYSFVDVFSNCHINLGRKNKMGEAVAM
                     LDWIKNRVVDKAKFESMDFEERKDKFPTGILHEDNSQPEYCHAYEEVRRAAKEKRMVD
                     LGALK"
     gene            complement(24322..25446)
                     /locus_tag="ACJFD7_000240"
     CDS             complement(24322..25446)
                     /locus_tag="ACJFD7_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate synthase subunit alpha"
                     /protein_id="HGG0859090.1"
                     /translation="MREVIATGNVLIAKAAIDCGCKFFGGYPITPSSEIAHELSHMLP
                     ANDGTFIQMEDEISGISVAIGAAMSGVKSMTASSGPGISLKAEQIGLAFIAEIPLVIV
                     NVMRGGPSTGLPTRVAQGDLFQAKAPTHGDFASIAIAPASLEEAYTETIRAFNLAEKY
                     MTPVFLLMDETVGHMNGKAVLPDLKDIKVYNRKKFEGDKKDYKPYAAGENEPATLNPF
                     FTGYRYHVTGLHHGDIGFPTEDGVIVKKNMERLIGKIKNNQEDICTYEEYMLDDAEFL
                     IIAYGSVSRSAKEAIQRLREQGIKVGLFRPITLYPVAEKKIAEVVSKFKKVMVSELNM
                     GQYLEEIERVTSRRDFISLHRANGRPITPSEIIAKVKENI"
     gene            complement(25455..25766)
                     /locus_tag="ACJFD7_000241"
     CDS             complement(25455..25766)
                     /locus_tag="ACJFD7_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HGG0859091.1"
                     /translation="MSMTAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHAVLG
                     QMIEVVHPESCIGCTECETHCPDFAIMVAKRDEFKFAKLTAEAKDRAVAVKNNKYKKL
                     A"
     gene            complement(25780..26649)
                     /gene="sucD"
                     /locus_tag="ACJFD7_000242"
     CDS             complement(25780..26649)
                     /gene="sucD"
                     /locus_tag="ACJFD7_000242"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HGG0859092.1"
                     /translation="MSILVNKNTKVIVQGFTGKEATFHAEQCMAYGTNIVGGVTPHKG
                     GQTHLGKPVFDTVADAVKATKTDVSLIFVPAFAVGDSVIEAADAGIKLAVVITEHTPV
                     KDMMFAKQYANKKGMKIIGPNCPGIITSEECKLGIMPGFIFKKGCVGLISKSGTLTYE
                     AANQVVQGGYGISTAVGIGGDPIIGLAYKELLSEFQKDDETKVIVMIGEIGGSLEVEA
                     AKFIKENISKPVVAFIAGATAPKGKRMGHAGAIVGSADESAAAKKEALKSYGIHVVDS
                     PALIGEEIQKILG"
     gene            complement(26659..27822)
                     /gene="sucC"
                     /locus_tag="ACJFD7_000243"
     CDS             complement(26659..27822)
                     /gene="sucC"
                     /locus_tag="ACJFD7_000243"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HGG0859093.1"
                     /translation="MNIHEYQAKAIFADNGIPTLKGKVAFSVDEAVANAKELGGSVWA
                     VKAQIHAGGRGLGGGVKIAKNLDEVKDYASKILGMNLVTHQTGPEGKLVQKLYIESGA
                     NIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHG
                     LEVARVLGLDKDEGKKLISMLAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSF
                     DDSALYRHPEIAELRDTTEENPAEREAAEFGLSYVKLDGDVACMVNGAGLAMATMDII
                     NYSGAKPANFLDVGGGASPETVAKAFEIILRDKNVKVIFINIFGGIVRCDRIANGILE
                     ATKNVEVNIPIVVRLDGTNAAEAKTILDNSNLKNIKAATNLKNGAELVKSLVG"
     gene            complement(27823..28725)
                     /locus_tag="ACJFD7_000244"
     CDS             complement(27823..28725)
                     /locus_tag="ACJFD7_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HGG0859094.1"
                     /translation="MKITVIGAGNVGSSIAYALILREIANEIVLVDINEDLLYAKELE
                     LTQSIAALNLNIDLLCTKDYTYTKNSDIVLFSAGFARKDGQSREELLQLNTSIMLDCA
                     KKIKDFTEDPLFIILTNPVDFLLNTLYESGIFSSKKIIAMAGVLDNARFKYELAKKLN
                     VKMSRVDTRLIGFHNDDMVLVKSYASVKNKNISEFLNEEEFEDLENEVKTGGAKVIKH
                     LKTSAYLAPASACIRMLESIRSGEFLPMSVILHGEFGVQNKALGVMARLGLEGVIEIM
                     KMDLSLQEKDKLEKSLIKYQYKGE"
     gene            complement(28722..30926)
                     /locus_tag="ACJFD7_000245"
     CDS             complement(28722..30926)
                     /locus_tag="ACJFD7_000245"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004450 - isocitrate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HGG0859095.1"
                     /translation="MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGR
                     ILATFSEYLKEEQRCEDALELLGELVKRSDANLIKTPNISASIPQLKAAIKELQDKGY
                     MLPNYPDEPKNDEELQIKTKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV
                     EFNPNSKTRVSYMKEGDFFSNEKAVLIDQDCVANIEFTSVDGKKEILKEGLKLEKNEI
                     LDATFMDVQKLQEFYAKEIKASKDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELF
                     IEFQDEFEKLGINPNNGLSELLSKIENSSKKDEILKKYNEILAKSADISMVNSDKGIT
                     NLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNG
                     TLNPSKLGSVSNVGLMAKKAQEYGSHDKTFMAKEEGTFKIVSNGKVLLEHKVRKGDIY
                     RANQAKFDAVLNWIDLGIERSELSGAEAIFWLDSKRASNKIMITLVQNRLKEKGKNVA
                     ILTPKEACLRSLELIREGKDVISITGNVLRDYLTDLFPILELGTSAKMLSVVPMLNGG
                     AMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCGNHKAKVLAECL
                     DEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFANHLARQASDMELQSFFKDIALEL
                     SSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRPSATFNAILEKIGQR"
     gene            complement(31043..>33313)
                     /locus_tag="ACJFD7_000246"
     CDS             complement(31043..>33313)
                     /locus_tag="ACJFD7_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA-like C-terminal domain-containing protein"
                     /protein_id="HGG0859096.1"
                     /translation="QNLNIKDNHVRILFKDNEFFIDNDLLFLKLTLQRQNKELIADIK
                     KLLLKDYDLNIDGNLSINTKSEFYYFQGRASGELLDFNASISYKDKNLAYKIEDLNIR
                     NITEIFKRVNKRIELPQSLNLWVAYRAKGEFYHLDYLRGFIDFTKDNYYLDNISASGY
                     VNNVKVRLDDKMNAIEIPKLDLNLNKQKLDFVFNKAFYNGADLSSSKVYLYDLFDEKK
                     VGIYLRIKSDNLKFDEKLAKALEDYHFSLPFYQKSGKIKSDLELKIDFHDKGEISYSG
                     ILALENASISLADFNITKAFVKLNQNDLNIENASVKNGFLEADFNAKFDLQKQQGNFN
                     TQISRLYFDNGELLDLKNQNVEVKLDYSQNVNISIPQWNLILNFKDGLEANLNNPKIL
                     FSFSPLLKKLGFIDAKNVYYKTLNFEDFNASVNDAYFKNNLLINGQTPYENDSFDIVK
                     NKGIMEIHTQSDTASAKISSDNKEIHLKNLSYIYRKHSNSSNSTFDIATNTQNISFGG
                     ANVALILADSNKTLAFDRVEADLKGNALDLKGSRGNAKFDLYYSSNDLNLNVSNIDDN
                     YLNEFLQKQAVQDGVFNLSIKGSGLEYFDGQIDFKNTYVKDLKGINQLISFIDTVPSL
                     LMFKSPTFNQKGLSLHDGKIIFNRKKDLLSVSAINLNGDSVDIYGLGSANLRLNTVDF
                     SLELKTLKSASEAISKVPILNYVILGKNQEISTNLKIDGSIDDPKFHTEILTDTLKTP
                     FNLIKNIIQLPANLLN"
BASE COUNT        11319 a         6204 c         4132 g        11658 t
ORIGIN      
        1 tgtaatttca ttacaaacaa caaacatttc aaggagaaca tttgaaaaaa tatttatttt
       61 cctgtgtttt agcctccatt ttaacccaat cagctacggc tgtagaattt caagaaggtt
      121 ttagtggaaa tttaagcata ggtgtgggtg caagggatat taaaagtaat atttcaacct
      181 tggcaaacag tgattatcta agcagtcaca atgctgataa ttcagactcc tctttcattc
      241 cttttatcgg tgtagaactt tactatggcg accttataga taatgataga atttttatta
      301 aaaactacaa tggaagagat atcagcggta tagctttagg ctacgaaaga gcttatttag
      361 agcgttttag cacttctttt tctgtgattt cctctttaag agaaaaagct tatgcaaatc
      421 cttatgcaac aggaaataga gaagaaactg atgttgatag atatggtttt aaaatctctc
      481 aactttatga aagtgatttt gggaaattta ccacttcata tttatttagc aaaaacaaat
      541 ataataaaga cactatcgca caaagctctt taaaaaggga ggggtattat cacgaatttg
      601 aattaaacta taattatagc ttattaaacc tagggttaaa ttatgattac aatgatgcag
      661 acggaaaagc tcaaagctat tcaagatatg gttttagcat agggacaaat ttggcttttg
      721 ctaatgatta catcttcact ccaaatttaa atcttagcaa atatgaagca gtaggaactg
      781 atcctatctt ccacaaaaaa caagatggta atatagttaa gcttaattta aaagttgtta
      841 aaaatcaatt tttgggttat aacggacttt atggttttgc aaattatggc atagaaaaaa
      901 gaaatagcga tataggattt tatgatgaaa cctatcaaat tgtcctaact ggtataggat
      961 ataaattcta aaaattataa aaaagctcct ttgataaaat ttaaaaaaga tctatctcct
     1021 ataaagatag atctttaaaa attcttttaa gaaaaatcca agctaaaatc aaaacacaaa
     1081 attcagcaaa aaatggactt agccatactc catttaaacc cataaaacaa gataaaaaca
     1141 aaagaaaaaa caaaggtata aataaatttt gcgccaaact taaaaccaaa gaaaagcttg
     1201 ccttattaaa agctgtcaaa aaagaaccac ttagaacatt aaaccatgca aaaaaataat
     1261 taaaagcaaa aagcatcaaa gctgtataag caaaagtttt aaattcttga ttgttttctt
     1321 ttgtaaaaag cgtgattaaa ttttctccaa atatcaatat aagcactata gagaataaag
     1381 ataaaaatcc ccctgcaaaa aataccactt ttacaatagc tttgattctt gaaaaatctt
     1441 ttttagcata gttgtaacta agcgcaggct gcattgcatc acccatagca ataataagca
     1501 ttataataaa actatcaata tataaaacta tagaaaaggc tgccacggct tgagtatcag
     1561 aaatttttaa taaaacaaaa tttgcaaaaa tactatataa agatcctgaa atattgccaa
     1621 aaaactcact gcttccgtta taaagaatat ttttaaaaat ttttaaattc atgtataggc
     1681 ttgaaatttt aagctctaaa ttttgaaaca agaaaggaaa aattccaaaa ataccaccta
     1741 aaacaagccc caaacaagtt gcaagagcag ctgaaaataa gccccgaccc aactcgacta
     1801 taaaaatata atcaagcact atattgctta atgctataat cacattcatt accatactat
     1861 aagcagtttt tccgcaaatt cttaaataat tatccaaagc aaaagaaagc atagtaaagg
     1921 gcgcaaacaa agcaaaaaca aacatacatt ctttagccat cgttttaatc tcatcgctaa
     1981 catttaaaca atcaatcaaa acaggtccta aaaaatactc taaaattcca ataaaacaag
     2041 agattataaa aataatcaac atacttgagc taaatatctt tctagctaaa ttcttcttgc
     2101 ctaaacctaa atgcatagaa atttgcactg ctgatcctat ggctatcata tcagccaaag
     2161 caaaagacat catgataaag ggaataatca aggctagtgc cgctaaagca tcacttccta
     2221 gatattttcc aacaaaaatt ccatcaacta tataataaaa agaaataaaa gccatgctta
     2281 taacatttgg cacggcacat tttacaaaaa gcctaaaagg gcttaaggtg ctaaaaatac
     2341 ttgacataat aatccttaaa atatttaaaa ttaaaaatat tttaaaccgc taataaaatg
     2401 ccaaaagtcc tagtacgtaa gaatttaaat aaagtaattt cgcaataagt ttattaatat
     2461 ttattttatt ttgcatatga attttctaga ttaaactaaa ataaaaattt agcccaaagg
     2521 ctaaatttta aagcacagaa agaattttca cagcgtcatt taaccctgta actatacttg
     2581 ctccattttt agtagcaata tctcctgcta caaagatgcc tttaacattg ctttgtttgt
     2641 ttttatccat taaaggcacg cctttatcat caacattaat cccacatttt tgtaaaaaat
     2701 caagtggagt agaaccacca atagcataaa tgattctatc ataaatatcg cttgtaccat
     2761 cggtaaaatt tactttagct ttgccattat catcttctac ttcattaatg tcaattccta
     2821 attttaactc taccttaccc gaatttccag cttcgtgaat atctttaaga tttatatcat
     2881 ttaatcttgt aaattctttt ttacgataac aaaggctaac ttgatttgaa tttgccaaat
     2941 ccacagcgta ttctgctgct gaatttccgc cacctacaac aagaattttt tcatttccca
     3001 aaactgaatt ggcattaaaa ttaatgattt ttgttaaagt cataggaagt ttgtaatcag
     3061 gtttattagg tttacccatt ctacctatag caacaataat gtttttacac tcataaacac
     3121 ctttagctgt acttactaaa aaaactccat tttcattttt aacgctctca acttcagaac
     3181 caaattcaac ttctatattg tgctctttta aagcgttttg aaaagtttct atagtgcttt
     3241 ctttggtgcc atcttcaaaa ggaacatgtc cgtgattggt tccttcgcat cccttataag
     3301 ctttatctac tcttttgcca tccttataaa attgcattaa agtttgacaa atgttatttg
     3361 atttttctag tatcaaaact tctttgtttt taagcttggc ttcaactgca cagcctatcc
     3421 ctgttggacc tgcacctact acaattaaat ctattttttt catttatatt tacctttcaa
     3481 ttctaaattt ttttgtataa tttatcaagt tttttgtaaa taaaggatta aaaatgcgaa
     3541 atttgcttga aaatattaag aaaaattctc aaaaactact taacttaacg cccaaagata
     3601 aagaaaaaat tattctaaaa ttagctcaaa ttttaagaga aaatttcaaa attatcctag
     3661 aagcaaataa aaaagatatg gcaaatttca caaaaagcgg agcaatgaaa gataggcttt
     3721 tgttagatga aaaacgtatt ttagctcttt gcgaaggcct agaaaaaatc gcttacatcg
     3781 aagatcctat aggcaaaatt tctaaaggct ggaaaaatta tgcgggttta aacatacaaa
     3841 aaataagcat tcctttagga ctcatttgtg ttatttacga agcaaggcct agtcttagcg
     3901 ctgaaatcgc agctttaatg ataaaaagtt ccaatgcttg tgtatttaaa ggcggaagtg
     3961 aagcaaaatt tacaaatgag gctatattta ctcttgttaa taaagtactt aaggaatttg
     4021 atttgcaaga ttgttttgct atgtttaccc aaagagatga aatcttgcaa attctagcct
     4081 ttgatgattt aatcgatgtg atcatacctc gcggaagttc aaatatgata caagaaattg
     4141 caaacaatac caaaattcct ctcattaagc aaaataaagg cttgtgtcat gcttttgtag
     4201 atcaaagtgc taacttagat atggctttaa aaataatcct taatgcaaag tgtcaaagag
     4261 taagtgtttg taacgcttta gaaacgcttt taatccatga aaaaattgct aaaaatttta
     4321 taagtctttt aatacctgaa tttgaaaaat ttaaggtaaa aattcacgcc catgaaaatg
     4381 ctttggctta ttttaacaac tcaaatttag aaatttttaa agcaaatgaa aatacctttg
     4441 acacagaatg gcttgatttt gctttaagtg taaaattagt aaaagattgc gatgaagcta
     4501 tagagcatat caataaacac agctccttgc attctgaaac cattatctca aatgatgctt
     4561 caaatatcgc taaatttcaa cgccttataa actcatcttg tatttatgct aatgcttcaa
     4621 cgcgttttag cgatggagga gaatttggct ttggtggaga agttggaatt tcaaccagca
     4681 aattacatgc aagaggtcct atggggattg aagatatttg cacttataaa tatataatca
     4741 atggggaagg acaaattcga gagtgaataa aatagaaata ctaaagcaac actttaaaga
     4801 aattgctaaa ttaaattcaa gcgaacaagt ttggcaaatg cctttttttg cggctttagg
     4861 cgtaggtata gttttagggc ttagtgtatt ttttggaaaa ttaaactatg gactcattgc
     4921 catgatagga gctttgtctt ttttatatgt tccaaacact cctttatatc atagaatggc
     4981 tgttgtgatg tgctgttctt ttggcatagt ttctagtttt ttcttaggaa ttttaactca
     5041 ttttttgcct gcaatttttg ccttcatccc tataggaatt atggccatgg gaagttctat
     5101 tttaattaga tactataaca ttggtgcacc tggatatttt ttctttgtat tttcttgtgt
     5161 tttaggagcc tattctcctt ttgaagctaa ggattttatc tttttagtag gtcttgtttt
     5221 tcttggagca atggtagcta atttaatggc tttgttatat tctatcgttg tgatttatgg
     5281 atttaaaaat gctttaccta gcgaaattcc acctagagaa tacataggtt ttgatgcagt
     5341 ttttgtggat tctttgatca tgggttcttt tgtggctttt tctatattta taggaacttt
     5401 tttagaactt gaaagaagtt attggatagc catttcttgc acagctatta tgcaaggtgt
     5461 aactttaaat tctatatgga ttaaacaaat tcaacgcatc ataggaacgg ccttaggagt
     5521 atgttttgca tggtggcttt tatctaaaca atttcacgat atagagctta ttttacttat
     5581 gatgtctttg ttttttatag gacaattttt agtcaatcga aactatgctt tagctatgat
     5641 tttctttact ccttatgcta cttatctttc ggaagcagct aattttatga gtgaaaatgc
     5701 agataaatta atactcgctc gtttaattga tgttgtaata ggaagcattt tagggctttt
     5761 aggtggtttt gtgatttaca aaccttatct aagagtgcat tttgaacgca ttgcaaaata
     5821 catctttagg ataaaacaaa aagcttaaaa gccaaataaa gcacaagcat tatcccctaa
     5881 aatttgctct tgttcttttt tagatacgac aacttcatta aaagctacta gagccgatga
     5941 aaaattaaca tttgattcaa aatttgtatg tggccaatcg cttccaaaaa caaaattgct
     6001 aagtggaaaa tgttctttta aaatttcata tattttcttt gcaaatttta cagcttgttc
     6061 attattagca taatctattt ttgctctata aaaaccgcta attttaaaaa atattctaga
     6121 gttttttaag caaattaaat cctctaaatt tgttaagttt gcattagctc ttgctaaatg
     6181 atcgataaca atattacaac cataaggaat taaattttca acaatatcaa caagattatt
     6241 atctaaatct ctttgaattt ctatttgcat tttaagctta cttaaatttt caaaaaattg
     6301 agtccaaacc atacttttaa aatttggcaa ttctttgcca attaaattta atctaactcc
     6361 acaagctttt ctttctttta gttttttaag ctcatcaaat ttaatatttt catcaaccac
     6421 aactatagct tttatatttt tatctttttc gatactctga agtaaaaatt cattatcaac
     6481 acctaaaaaa cttggctgaa ctaaaatccc tttatcaaaa tcataatgat ctaaatttgc
     6541 cttataatct ttaaaactag cgtcataatc aggtttatat cttgcatttg caaccgtatt
     6601 taactttttc aaaaatatat gtgcatgagt atcaatcttc attaaattat ccttataaaa
     6661 taaaactcat tataatagtg gctaaaatcg ccgctataaa tcctataggc acagctttaa
     6721 taagtaaatc tttaaataat ttttccttat atttgttagg acaagatcct aaaattagac
     6781 ttcctccaga agaaaaagga gaaatagcag aagcttgagc ccctacaaca atacaagaaa
     6841 aaagcaatgc ctcgcttaat ccactgcttg cagcaatgct tggaactata ggaaaaagcg
     6901 ctggagtaac cacacccaaa gtacttgaaa aaagcgacat aaaagctgca atagcacaca
     6961 ttattaacgg aataaaaatc acattgatct cattttctac aagatctgaa aataatttta
     7021 taacccctgc ttcaactgct atgctaatta acatccctac tccacaaatc attatcaagg
     7081 ttccccaagg aattaaagca acaacttgtt tctcatcggc taattttaaa aataaagcaa
     7141 tggcaacaaa aatcatggct atcatggcta tatctatttt tttattaaaa taactaattg
     7201 tctcattatg tggaaaaata atatttagca caggaaagat taaaacaaca acaatcatca
     7261 taaacatgag aattaaagta gttttttgtt tataatcaaa tggatcaggt tttaaaataa
     7321 cactaatttt tatattattt ttaaaagcat taaacacaaa aaaagataat accacaatag
     7381 gcaagattat agtaaaagca aaaataatac tagaatttac aaaagcttca tttgcttcaa
     7441 tgcctgaatt ttccatcaat cctcgaaaaa taatcccgct ttgagaagtc ataaaatttg
     7501 ctcctcccaa agcaccataa tttatagcca tagctccagc aattttgctt aaaccgattt
     7561 tatcgcaaag taaaaaagta agtggtgcca taaaagctaa aactgtataa aaacctgctc
     7621 ctaaagcagc tataatagca ctaaccacaa aaataacaaa aggaagcaaa taaggatgat
     7681 tagcaaaacg atacatcaaa tgtccagcta atttttcaag agttctattt acggttgcaa
     7741 aattataaaa caatgagaca gcaaaaataa caaaaaatat agaaataggc caaaaagcta
     7801 tgattttttt aggagctaaa tccataaaaa aagctcctat aatataagca aaaatcatag
     7861 caaaaattcc aacattatgt ctagtaatat agcccaaaat aatagccact ataatactag
     7921 agatgattaa aaaaaccatt atcatccttt aaaatattat agggcttata atatcaaaaa
     7981 atatattttt caaagcataa aaacaaaatc taaatttaaa aaatatctat ttagcaacaa
     8041 atttactcat cttatgaaat tttttataaa atatccacat ccagagcaag caaagcaaag
     8101 cttcctagcc aatgcgaccc aagataatca tcttctatat gagctatagc tttatcaaaa
     8161 tgctctgtag cattgtttct taaaagaatt tttaaatttt catcgcaaaa atttgaaagt
     8221 attttaaaac accaagcgcg acttaaattt agcccatcta gatgtgctat tttaccatcg
     8281 ctcctatcac tcacactcac aggggtaaat aaagttgcag gctcttttgc ttctaaattt
     8341 ggcaaatatg ctttaaaaaa ttttacaaaa tcatttttat gtaaaacagc acttaaaagc
     8401 accgcttcca tcaaaacagg agataaaaac tcatctccac aaggctctaa agcttgcata
     8461 tttttatcat ttaaaaacca ctttttagca ctttggatga tgcaatactc caattcttga
     8521 tcttttttaa atcttgcata ttctaaagca aaatacaaag caaaagagct attaaaatgg
     8581 gttccaactc gtataggata atccatctta ggtaaaaact ccttaaattc tttaacaaag
     8641 aaatcagcta tgccttctaa atttttagcc caaatttcag ctttgtcatt ttctttagca
     8701 agtaaattta tctccaaagt cagttttaaa aaccatcccc atccataagg tctttcaaaa
     8761 cctttgtgtg cagggttttg aagatattta agctctcctt ctgctttttc tttgctaaat
     8821 tgagaatcta gagctttgat gatttcatcc tttggagcaa aatgagaaaa atcttttaaa
     8881 attttcacca aaagccagtg agaatgcacg ctagaatgcc aatcataaga accataaaat
     8941 ataggataca taagttttgg cggtttaata tcattgatat cattaaaaga atgtgtgatt
     9001 ttatttggca attctctaaa aatattttct agtgcaataa agctaaattg ttttataaat
     9061 ttttccattg tttctcctta aaatctaaaa gctaaaaaat acattaaaaa gatattagct
     9121 acaagcaaaa caagtcctga cataaactgg gctttaatta cgccattttt atcatccaaa
     9181 tttaaaagtg ccgcaggaac tatattaaaa tttgcagcca taggcgtcat taaagttccg
     9241 caaaatccac taagcattcc aatcgcacct ataatagcag gatttgcatg catttgtatg
     9301 attaaaatcg gcaaagcaat agcagcagta atcacaggaa aagctgcaaa agcattgccc
     9361 attactatag taaaaagcgc catagcgata caatacacag ctactgcaat aaaagcatta
     9421 tccaaactaa tataactaga taaaagttta gatacttgat cgcccattcc tgtagaaaca
     9481 aaaactaccc caagtgtagc caaaatttgc ggtaaaagcg ccgcccaact aatgtgatcc
     9541 atagtatgtg ctgcatcttt aacagctctt ttaggagaag ccttaaacat aaaacaagca
     9601 actattgaag aaataattat acctataatc aaagccatca atgtagcatt tttattttca
     9661 aaaaaactca aatggggaaa taaaaaagtc ccaataagtg taatcaaagg aaccattaaa
     9721 gcaggaataa aaagtttatt tttataaata tttgcatgtt ttatctcgta ttctttttct
     9781 tctttgctaa cttcgatctt tgctggtttt aataaattaa accctgctat aagtgctagt
     9841 aaaatcacta tacaacccat cacaaaatga ggcaaaactc ctgctagtaa aaaagtaaaa
     9901 ctataactta tccaaaatac cccgccgctt attcttgatt ttatatcttt agcttgatta
     9961 gaaaaactta aaattccaaa aactaaaaat aaaattccta caatataata aagtaaatca
    10021 agacttatca tcactcaacc ctttataagt tttttccaat cttttatcaa ataaataaag
    10081 tctagagcaa tggataatta aagccaaaat tccagttggt atagcccaaa ctgataaatg
    10141 caatggctca acaataatac cattgctctc ataaaaagct ttaataaata aaatagaatg
    10201 cacggctata aaaatatcct ctccaaaaaa tacagcaaca ttatccgttc ccgcagaaaa
    10261 agctttgatt ttttgactat ctttatgtgt taagttttta aatttaagct tagctgcagc
    10321 ttctgccata ggggctatta aaggtcttat catctgcgca tgtccgccta aagataaaag
    10381 ccctaaagct gcagtaactt gtctaaaaac aaaataacac attaaaattc gtcctgtact
    10441 ggcaactttt attttggata ttaaattttt agcctgctct cttaagcctt tgcgttccaa
    10501 aacagcaagt aaaggtaaaa taagccaaat tatagcaaca tagcgattat ctacaaaaga
    10561 ttttcctata tcactaacaa ccttaacaaa atcaaaacct gaaacaagtc cagcataaat
    10621 tccaactgaa gttaccacta aaaaggggtt aatctttaaa gcaaaaccta aaacaatcaa
    10681 aggtatagaa gcaagaagta accattccat caaccatctc cataatatga attagaaata
    10741 ttatagaaat tttaaattga agaaaagttt aaaaaaatat ttttaagaat ggaatgagaa
    10801 attaagtaac aaaataaatt ttatataaat ttaaaaaagc cttggaatag tccaaaagct
    10861 ttttttgtat tatttgttcg ctctttctat atactcacca cgcacagtat caacgcgtat
    10921 aacttcacct tctaacacat gaaaaggaat ttgcactact gcgcctgttt ccaatgtagc
    10981 cggtttttta tttgatcctt gagtatcacc cttaaaattt ggagctgttt cgatgatttt
    11041 gagttcaaca acttgtggaa cttctacgcc gatagcttta ccattatgga aaagcacatc
    11101 taccatcata ccatcaagca tccatttttt cgcctcacct acatcatcat cactaatagc
    11161 tacttgttca tatgtttgcg tatccataaa ttggcaattt tcaccatcat cataaagata
    11221 ctgcatagtt ttatcttcta aatttggagc ttcacattta tcacctgcat ggaaagtttt
    11281 ttcaagtact ttaccatcaa taaaagattt gattttaata cgcacaaaag caggaccttt
    11341 gcctggtttt acatgctgat actcgactat tttaaaagga attccatcga tttctatttt
    11401 aagtcccttt tttaaatcac ccattgaata agatgccata aatttccttt gttaaaaaat
    11461 aaaaaacaat tttatcaaat tttgattgat atcacaataa aattatttta tttgatgaaa
    11521 aaataagtaa aattacgtta aaatccaaat ttaaagcata gtaaatgctc gcttcttttt
    11581 aggagaggaa agtccgagct gctaaagaca aacattccat ctaacagatg gctagggtaa
    11641 cctaagggat agtgcaacag aaagaaaact accacgcaag tggaaaaggt gaaacggcgg
    11701 ggtaaaagcc caccagcgat tttggtaaca atttcggcta tgtaaaccca atgtgcagca
    11761 agaagggatg gttagcgtct ttgttttaac ccttcgcttg attttgtttg caaaaacaaa
    11821 actagataaa tgagcattca agacagaact cggcttatcg ctatgctttt ttaagattta
    11881 aaatatgtca acgctttttg aaatttttga atttcaacag cttttgtttt tttcttttgt
    11941 tcaatcagta taacagcttc ttgcaaaaga gcttgaactt gatagaatac atcatttgca
    12001 ttttctttta aaaaatcttc tgaaggcgat tctttggcta aatttttaat aaaagctttc
    12061 atatcaagtt catcaagtaa attttcaagt ttattgacat cttcttggat taatgcaagt
    12121 ttaaaatcac tgagccactg tttcattgtt atgcacttct ctccaagctt ctagcaaacc
    12181 tttggttaca tttataactt cattgattct atcttcgtta ttttctaaat ttgccaaaga
    12241 taaaagttga atttctcttg tataaagccc gcttaaataa tgtgccactt ctccgccttt
    12301 ttcatagttt aaagtattaa taagctctat aaaaatagcc gtggttcttt ttacaaaata
    12361 cactctttgt tctatatctt catttcttat ggctacttta gctcttgcac aaaaacgcaa
    12421 aattccctca taaagcattt caataagttt ttgcggagac tctatcccca cttgattttg
    12481 agaataagca ttataggcta aattattttg catctttttt atccttaatt attagaattg
    12541 tttgccgcat taatcatatt agttacagta tttagctgtt gattgagttt atttaaaata
    12601 ctctcatatt gcaaccattg attcgccatt gtatcatatc ttgtatcaat catagcttga
    12661 gtcgagtctt tagaggtatt taatgattta atatcatttg tcaaactctc atcatatttt
    12721 gtaattgaac catcttttcc agtcatctct tgcaacgtgg cttttaattt tgaaaaaata
    12781 cctttacctt ctataggctt agaggttata tttacgtcag acaaacctaa ttccttgaga
    12841 atgttagcat ctcctttgat tgaaaaatcc gagctaccat ctccactaaa attcaaccta
    12901 aaccctgtaa cattgttttg attataggat tcaaccttaa cttttaagcc ttcaatacct
    12961 ttactgttta tatgattagc taaattttga agcaattctt cctctgtttt ccctgttaat
    13021 ttaaaattag taccatcaga atttttagat aaatcatatg tttgattatt aaaaactata
    13081 gtaaaatctc ctggtttaaa ttctaaacca ttagtattac ctccattgga attaagatat
    13141 ttacttaaac ttcctgtctt aattacctct cctgtgtgat taatgtcttc gtatttagta
    13201 atatttgaaa aaaaactttc agtagagtct ggatcttctt taactttttg ttcaaattta
    13261 gaagaatcaa aactcaaagt gcctgcatca tttaaactta agccaaaatc ctgcatagaa
    13321 agcataacct tagtgttcac tttattacca tttgcatctt cagtagttcc atcaacaact
    13381 tgagaatcaa acaaatcagc aagaatgctt gagcgtattg aatttacttc actgatgcct
    13441 tgtaaagttc cttttgttcc agtttcacta ttatagtcag ttgcagcatt aagattggtt
    13501 actaaatcat tataagcatc caccaaatct tgcatggctt ttgtcacacc ttcaaaatct
    13561 tgctgtacat caaaattaat ttcacctgtt ttatttaaag ttaaagtcat tcctacacca
    13621 agatcggtaa cagtgttact tgatctaaac atcttaatac catcaagtgt aaattctgca
    13681 ttttgcgcag tttggatatg caaagaagca tccttgatgc cataaccttt tttatcctta
    13741 gctggatcaa tagaactcgt tttatctaat tcccatccaa gatttgaaaa tatgttttct
    13801 gcctctgaat cactttgata ctgaccattc gaatcttttt ttccagcata gaaacttatc
    13861 gcactgtctt cgcctgtttc tttactggtt aaagttaagc ggtaaggagt gcctttctct
    13921 cctgtgttta caatcttagc aacaatctct cctccactag cttcattaat tttatcagct
    13981 aaatctctat aggttgtgtt tttatctacc gtaacagtat attctttgcc atttgaaaaa
    14041 aaagtaagat cggcagttcc atttaattgt gcattaacaa aaccactgtc atttgctaat
    14101 cctttacttt gatacacatc tttttgtgca agttgagtaa cattgatatt catgctttgt
    14161 aaagcaacgc ccgaattaac tgtaagactt gctggaggat tatcgctaat acttcctaca
    14221 acttttcttt tcgcaaaaac cgtagcatcg gctaatgatg aaacagccgt ctgaaaactt
    14281 agtaatttag ttttgatttc tgttaaatct ttttgtttgg ttgtattttc ttcaattttt
    14341 ttagtataag gatcaatacg agctttttgc tctgcttctt ttaatttatc tatagtatct
    14401 tgagttaaaa ccccagaacc aaatcctaaa ctagatagac taccaaatgc catttttaac
    14461 tctccttatc aaatatcatt cctatcacat ccctaaaata ctcagctaat ctcatagctt
    14521 cttcgctagg aatttgacgg atttcccttc cagtactttt ttcagtcacg ctaatataca
    14581 tagaaccgat tttatcacta taaccaaaac gaacattggt atctagagaa tccatttgct
    14641 catttaactt ttttgtaata tcagccaact tttcactcac acctcgttgc tgtccatcat
    14701 cgccttcttg gccttgactt ctatcggttt gaatgtttaa actagcctgt gtctcacttg
    14761 ttctttggct aatgtttgcc aaagctgtat ccatttgccc atttgccttc gatatttcca
    14821 ttttaaaatc ctttttaaaa tttcctattg ctagttaaaa gcttatatcg acaaatttat
    14881 aaatttatga acacctataa agaaaatttt atttttcaat aataaaaaaa taataagcaa
    14941 aaactgtgcc aaaattttaa aataaatctc aattatctta aaaaatttca aatttattaa
    15001 aaagatctgg attattttct aaaatattac gcaagatcaa atcttctatc acgcttttag
    15061 tgcaatctgt ttgcttaggc caagctctta aataaccctc agcttcacct ttagcacttg
    15121 catctactcc aagtctttct tctttgataa aaatatctct tttagcatct atattattta
    15181 ccacacgcca aacaagcata taagaatttt caagcttatt ttcaacatct aaaaacacta
    15241 aaatcctaaa atgtttttta aattctaaaa gtttgtcaaa actttgttcg attttttctt
    15301 ttttatcaag caaaatacaa actataggac ttttactttc tttataaaat tgctttaaat
    15361 ttaaaagttc taccttagtt ttaaaaagtt ctagtaattt ttcatcttct aaaatttcaa
    15421 gctcttcaac ttgtatttct tcgcaagcat caagtcctgc tttaccccca aaacaagaat
    15481 taggtgaagc atgatctaat tgatcacaaa ttccttctga aattaaaatt ttctttgtat
    15541 taaaacgatc taacatataa ggaattaaag catcataatc tttcaaagaa ggtgcatttt
    15601 tatccacaaa aattgcatgc ttaacaaaac tcatttgccc tactccccaa aatgcatgca
    15661 taatttgttg cgcatgagcg ggatattttg catcgatttt tgctaagata agattatgaa
    15721 agaccccatt ttcaggcata ttataatcaa ttaaatcagg tactgaagtt tgaagcaaag
    15781 gtaaaaaaat tctttcagta ccaagtccca tgatcttatc ttctaaagga ggctttccta
    15841 caaccgttgc ttgatagatc gcatcttttt tagcataaat tttttctact ttcatcacag
    15901 gaaaaagttc agcaggagtg taaaaacccg tatgatctcc aaaaggacct tcgattttaa
    15961 actcttctaa atccacataa ccttcaataa ccacatcact atcataaggt ataaaaatac
    16021 cattttcaca aggagtaatt tttgcaggag tttttttaat aaaaccataa agtaaaagtt
    16081 caaaaattcc cttaggtaaa ggtgcttgag aacaccaaat ataaagcgga tctccaccta
    16141 tggctatact tacaggcatt tttttaaaac cagcattttt gtattcgtga taaaaatttg
    16201 ccccatcttt atgaatttgc caatgcatta aaagttcatt tttatcactc atttgcaaac
    16261 gatacattcc aagattattt tgagttttat ctaaattttg tgtataaact tgccccatgg
    16321 taataaattt acccgcatca tcttcccaag tttttagtat gggaagttct tcaagtgagt
    16381 ttaaaatttc ataatcatac aaggctttat tttttttcag tcttttagga ggaatatttt
    16441 taaaacttaa caaattcata aaaaaatcca tttttgcttt aaaactcgta ggaatatgaa
    16501 gcttggtgag ttttgaaatt tcttcagcca cctcttcata atcacatcca aaagctaaat
    16561 ttaaagcctt ttcattgcaa aaagtattca tcaaaacagg aaatttatat tgtttattta
    16621 attttttatc tataggattt ttaaataata gagccttccc tttttctcct tttttagctt
    16681 ctatataggc taaatgagcg atttcaagat ctacatctac aggttcttca attaccctta
    16741 aaagatcatt ttcttttaaa atttgaataa attctttcat atcatactct cagctttttt
    16801 taaaagttct ttagcacctt tagcaataaa ctccttagcc aaactctctc caaaaccttt
    16861 aaaatcattc tttttaatca ttctcttatc ttttaaaatt tcacttccat cgggtagtcc
    16921 aagtaccgca cgcacacaaa tttcatctcc caagagctct gcgttaatac ctataggaac
    16981 ttgacaacct ccttctaaag tagcaataaa ttctctttca atgcttgttt caatcaaagc
    17041 attttcatca tttaaacatt ttaaaagttc taaaattttt tcatcattta tgctttcaat
    17101 acctaaagct ccttgagaag ccgcaggaat aagctcatct ttgctaaatt cataaacaaa
    17161 attcacttgc ttatctaagt ttaagcgttt aattcccgcc attgccaaaa taatcgcatc
    17221 aaaatcatta ttttttaatt tctctatacg agaattgaca ttaccacgca aagaaataat
    17281 atctaaatca ggtcttaata ataaaagctg catcttgcgt ctaagactag tagtgcctat
    17341 ttttgcacct tttggtaaag aaagaaaatc tttataattt tgacttagca tagcatcatt
    17401 gctttgctct cttttgctta ccgctgccaa aactaaacct tgaggaaaaa aactaggcac
    17461 atcttttaaa ctatgcactg ctaaatgtgc ttcttttctt aacatacttt cttcaagttc
    17521 ttttgtaaaa agtcctttac caccaatttt tgccaaagga gaatccagca aaacatcgcc
    17581 ttttgtttta aaaccttcta aaagcacttc aatttgatgt gtatttttta aaatttgggc
    17641 tacatgctca ctttgccaaa gagccaattg actttttctt gttgcgataa taagcttcat
    17701 tttctatcct ctataatttc aacatcaatg atttcttcat tagaattttg atactcttgc
    17761 ttggtgtatt gatattttga tttagttatt aatttcaaag caataccaaa gaaaaataca
    17821 aaaatcccaa aaacacttgt aataatccct ggaaaaacaa gtaaaaaccc tgcgataaca
    17881 aaagaaaatt gtgttaacat atcctttagg ccacccattt gaaactcaag catatttttc
    17941 caaaaaattc ccaataaaac cgcaccaaaa atcatactca aaagtatgaa aaataaaaaa
    18001 ttaccaaaac caaaaaacac tataaaaagt atacttgcaa taatttcaag tacaaataaa
    18061 ggacttaaac ttaatttata attcataaca ctttcttttt aagaatttcc ataagttcat
    18121 cagtttttat aagttctttt accaaatctt ctctttggat aagctctatt tcattatttt
    18181 ctaatccctt gccaataact aacgcataag gaaaacccat aagttcaaaa tcattcattt
    18241 taaccccaaa acgctcattt ctatcatcaa gcaagacttc taatccaaga ttagttaaat
    18301 cctcataaag cttattggca aattctaaag ccttttcatc tttgagattt gaaacaataa
    18361 tttcaagcac aaaaggagct aaagttttat tccaaataca tcctttttca tcatgatttg
    18421 cttcaatagc tacagccaac aagcgtgaaa cacctatgcc gtaacatccc atataaaaag
    18481 gctgactttt gccattttca tctaagaaat ttgcattcat cgctttggaa tatttttgtc
    18541 ctagcttaaa aatatgccct acttctatac ctttactttg ttttaatttt gctccacatt
    18601 taacacagca atccccttct ttaacttcaa tcaaatcttt aaaacgatct ttatttaaat
    18661 ttacaacatc aataccgatt aaatgataat ctttttcatt cgcacccata atcatttgct
    18721 tttcgttttc aagctcaaaa tctatataaa aatctatatc ttttaatccc acaaaaccta
    18781 taaaaccagc tactaagcca gctttttcca attcttcttc gctcgcatcg actagttcaa
    18841 gggcactgca agcattttga gccttaacct cttgcaaatc atcacttcct cttataaaaa
    18901 acacaactaa tttgctttca ttttcataaa tagctttttt taccactgct ttaatcgtat
    18961 aaaaagcatt gattttaaaa aattgtgcta aagaatctat aattttaata tttggagtgt
    19021 gaaatttact tgcataattt gcttcaggac gctcatcttg acaagttttt ttagctcttt
    19081 ttgcagcttc aacattagcc gcataatcac aattttcaca gattaaaata tcatcttccc
    19141 cattttttgc caaaaccata aattccttag aaccacttcc accaatagcc ccactatcag
    19201 cttcaactgc tctaaaatca agccccattc tttgtaaaat ttgagaataa gttttataca
    19261 taagctcaaa ctcacgccct aaatcttctt cattagcatg aaaactatat ccatctttca
    19321 ttagaaattc acgacatctt aaaagcccaa atctaggcct tgcttcatca cgaaatttaa
    19381 gtccaatttg atataagtgc aaaggaagtt gtttatagct tgtgattttg ttttttacca
    19441 aagaaagcat agcttcttca tgtgttggac ctaaaacaaa ttcattttct tttctgtctt
    19501 taaaacgcaa aagttctttt ccaaaaacat tataacgccc actttcttgc cacaaacttg
    19561 caggagtgat aaaactaaga tttacttctt gtgctccagc cttatccatt tcttctttaa
    19621 ctatattttt aatcttgtct aaaactcttt ttcccaaagg caagaaatta taaagtccgc
    19681 taccaatttg ttctacaaaa cccgcacgcg ttaaaaaaat atgactaggt aaactcgcat
    19741 cttttggcgc ttcttttaaa cttggtgcat aaaatttagt aaatctcatc attattctcc
    19801 atatcaaatt cacatttata ttgattcaaa ccttcaagat tattttgcaa atcaaaaaca
    19861 taacgcatag cattaatcac tgtatcgctt tgcattttac cttgtaaatg tttcaaattt
    19921 acagtaggcg tgtgtaaaaa agccttaaaa acttgatgaa tcaactttct agcctcttct
    19981 ttatcagatt ttttcaaata tccttttttt aacgcaattt caagttgttt atctgcatat
    20041 tctttagctt gcaagcgtat agctttgata ataggcatca aagccaaatc gtttaaatac
    20101 ctaaaaaatt cacttgtttc acgacctatt atcccataag ccatacgagc ttcttgttct
    20161 cttagtgcta aatttttttg aaccacaatt tcaagatcat ctacagcaaa aacagatata
    20221 ttttcatttt cattgatatc aatatccctt ggaactgcaa tatcaaaaaa ataccttcta
    20281 taagaaagtt cttctactaa agaatttgta ataatagcat ttggtgcatt ggtagctgag
    20341 aaaaaaaact cgtattgatt taaatatttt tttaaatttt ctaaactatc atattcgctt
    20401 aaaacaccaa gtctctcaca caaatcttta gctttttgta aatcacgatt taaaataatc
    20461 accttagcac ccgcagcaat taaatgtttt gccgcaagtt ctcccatctc tccagctcca
    20521 ataacaacag cttttttttg cgttaaatct gcaagttctt ttgcttttgc cacggcaacg
    20581 ctagctacag aaatagaatt tttagaaatt tgagtttcat tgcgtacctt agcagcacat
    20641 ttaaaagcac tatgtaccgc tcttgaaaga tgtactccac aaaaattatt ttttacagca
    20701 aaagcgaagg catcttttaa ttgtcctgct atctgagttt ctccaaccac caaactatcc
    20761 aaagaacttg ctacagaaaa aagatggtgg attgccccac tatcttcaaa aatatcagct
    20821 ttttcaagta aaatatcttt atcaacatca caaagtaaag ccaaagattt aacaataaac
    20881 tccgcacagg ccatttttac aaaagcaaca atttcaacac gattgcaagt acttataacc
    20941 aaacattctt caatattttc atgagtgcta atgattttta aaaactcact ttttttagct
    21001 tcattggaaa agcttaactt ttcccttaag gcaatatctg tatttttatg agtaaaagat
    21061 atacaataat acattaaaat tccctatcta tcatagcttt aataatatca ttaagcttat
    21121 tattatcata tttttcaatt gcttttctag ccttttttgc ataagtttta gcttctaaaa
    21181 tagctttttc taaagctttt tgttcttcaa atttagtttt tagccattct ttttcatttt
    21241 catttaaatc ttttttaaat aaagtctgca aatatatcct atcttgttct tgtaaatttt
    21301 cataaagata aatataaggc aaggtagttt taccctcttt aaaatcattc atagcaggtt
    21361 ttccaagaat tttttcatca ctcttaatat ctaaaatatc atcaatcatc tgaaaagcaa
    21421 gtcctaaatt tttaccatat tctgcaaaat ctttttcata taatccagcc aaaatagctc
    21481 cgcatctagc acttgcttca atcaaaacag ctgttttatt atagatcatt ttcaaataag
    21541 cttctttatt gatattaaat ttctctccca aatcaacatc cataagttcg cctatagcaa
    21601 gctttacaac agcatctgaa ataatacttg caaatctagc atccattttg cttaattcat
    21661 aaaaggcttt tgaatacaaa atatcaccca acataagagc attttttgta ccaaattcag
    21721 cattaacaga tcttgctcca cgccttaatt cactctcatc gataatatca tcatgtaata
    21781 aactagcaag atgtatcaat tctatagccg cacaaatttt aaaagcaatc tcactctcat
    21841 ctgcgatagc taataataat ttagagcgta atttctttcc tgattttaca tttgaaagca
    21901 tatttaaaat aggttcatag ccaagctctt gtaaaaactg ttttattaat tcatctattt
    21961 tttgcactat cttttccttg ttaattgcta ttattatttt ctttgcttgt taatggtttt
    22021 acctgaggtt cgttaaaatt aatcatagga acaacctgat tattttgcgg tggattttgt
    22081 aaagcttttt ttctcggatc taaaaattct accattaagc gagattcctt atcttctata
    22141 taaaccgtaa aagttgccaa acctttatta taaccactaa attctaaaat aagtcttgct
    22201 ctatcaatat gtggattagt ataatcaggt attaaagttt gagttaccca atctaaattt
    22261 cttcttaaac tcatcacaaa ttgacgcgga tatttgcgaa atttcgaatg tacgatgata
    22321 ttagtattat caaacaaagt ccaataaaaa tcaaaatttt gcaccttatc ttcatagcct
    22381 atttctttaa tctgcacact agctctctca tcttttttaa gtataaattt ataagtataa
    22441 tcaaaagttg gttcagatgc taaaacatta ctaaaaataa aaaaaataca aattaaacaa
    22501 gggcttattt taaacaattt tagccttcgt gtcctaaaat ttttgcgccc aattctatat
    22561 aaatatcatt ttgcctttct tctataaaat caccattttc taatatgaaa ttttttacat
    22621 ccatttctat taaaccttgt ttttccaaaa gttccaccat ggcaatatga tcagcaaaaa
    22681 attcctcaaa aactttttct aaggctccta aatttccatt ttgtataatt tctataaatt
    22741 tttcttttgg agttttatta aacatttcat caaaaaaatc cattaatttt ccttgaaaat
    22801 ataagttttt gattataaaa ttttaatcgt taaaagtagc taaattaaaa taattaaaat
    22861 ttaaatttta tttgtaatgt gtaaaatttt agaagttaaa ttccgcatga tgcggaattt
    22921 attatgaata tggttttgct tgagtggcgt attttacacc cagatcaaaa gctttagcat
    22981 ttgcatcacg agtttttgca ggaaccatat gaagcatagt ttcttttaaa acatctaaat
    23041 ctatacattt gctcatataa gcagcaattg caagtgcaac aactgattga gtagccacat
    23101 ttcctacctc atctttagct atggtaataa tagggatttc aaaaatttgc cattttttat
    23161 aatcttcact ttcaggatgt actaaatttg gctctacaac tataatacct ccttctttta
    23221 cacccccacg aaaaccttta taacccttat ctgcagtcga aagcataaaa tctacttccc
    23281 cttctacagc ataaggaaat aaaatttctt tatcatcaat gataatatcc accttagtag
    23341 ggccaccacg cacttgtgaa gtgtaagtag aagccttaaa agcttgacga ccttctttaa
    23401 tggctgcttc tgctaaaatt tctcctgcgg tgataacacc ttgtccgcct tcaccgccaa
    23461 atcttaattg atatttcatt ttaaagctcc taaatccacc attctttttt ctttggctgc
    23521 acgacgtact tcttcataag cgtggcagta ttctggctga gaattatctt catgtaaaat
    23581 tcctgttgga aatttatctt ttctttcttc aaaatccatg ctttcaaatt tagctttatc
    23641 cacaacgcga tttttaatcc aatcaagcat agctacagct tcgcccattt tgttttttct
    23701 gcctagattg atatgacaat ttgaaaaaac atctacaaaa ctataaccct tatgcgctaa
    23761 agccttataa attaaatttt caagcttatt agcttcgatc acattacccc ttgccacaaa
    23821 agaagctcct gcagctttag ttaattcaca cgcatcaaaa ttagggtcaa tatttccaaa
    23881 ttgagctgtt actgtataaa aaccttttgg agtggttggg cttgtttggg aattcgtaag
    23941 tccatagata aagttattga tcacaatgtg ggttaaatca atatttctgc gacaaccatg
    24001 tatagtatga tttccaccaa ttgccaaagt atccccatct ccgcttacta caataacatg
    24061 tttactagga ttggctagtt taatgcctgt tgcataagct attgctctac catgagttgt
    24121 atgaactgta ttacaattta cataagaact cattctgcca ctacaaccta tacccgaaac
    24181 aagacaaaca tcatccatat tccaaccaag tttttctatc gcgcggataa tacattttaa
    24241 aacaacacca tcgccacatc cccaacacca ttgagtaggc attttatcta ctcttagata
    24301 ttcatcataa ttaaaagcca tttatatatt ctcctttacc ttagcaataa tttcacttgg
    24361 agtgatagga cgaccatttg cacggtgcaa actaataaaa tcgcgacgcg aagttactct
    24421 ttcaatctct tcaagatatt gtcccatatt aagctcgctt accattactt ttttaaattt
    24481 gcttacaact tcagcgattt ttttctcagc cactggataa agagtaatcg gacggaaaag
    24541 ccccacttta atcccttgct ctcttaatct ttgtatagct tcttttgctg aacgactcac
    24601 gcttccataa gcaatgatta aaaattcagc atcatcaagc atatactctt cataagtaca
    24661 aatatcttct tgattgtttt ttattttacc tatgagtctt tccatatttt ttttcactat
    24721 aactccatct tcagttggaa aacctatatc tccatgatga agtcctgtaa catgataacg
    24781 ataacctgta aagaaaggat ttaaagttgc aggctcattt tctcctgctg cataaggttt
    24841 ataatccttt ttatcgcctt caaatttttt acggttatat actttaatat cttttaaatc
    24901 aggtaaaacc gctttaccat tcatgtgccc tacagtttca tccataagta aaaatactgg
    24961 agtcatatat ttttcagcta aattaaacgc tctaatggtt tctgtataag cttcttcaag
    25021 acttgcagga gcaatagcaa tacttgcaaa atccccatga gttggtgctt tagcttgaaa
    25081 caaatctcct tgtgctacac gagttggaag acctgttgaa ggaccacctc tcataacatt
    25141 tacaatcaca agtggaattt cagcaataaa tgcaagtcct atttgctctg cttttaaaga
    25201 aattcctgga ccgctacttg cagtcatgga ttttactcca ctcattgccg caccaatagc
    25261 cacgctaata cctgaaattt catcttccat ttgtataaaa gttccatcat ttgcaggaag
    25321 catatggctt aattcatgag ctatctcact actaggagta ataggataac ctccaaaaaa
    25381 tttacatcca caatcaatcg cagctttggc gattaaaaca ttacctgttg ctataacttc
    25441 tctcattatt tttcctatgc taattttttg tatttgttat tttttacggc tacagctcta
    25501 tctttagcct cagcagtaag tttggcaaat ttaaattcat ctctttttgc caccataata
    25561 gcaaaatcag ggcaatgtgt ctcacactcg gtacagccta tacaggattc agggtgtacc
    25621 acctctatca tttgtcctaa aaccgcatgc acatcatcgc gcatagctaa aaccccagcg
    25681 gggcaatagc taacacaaat attgcatgct ttacatctat gctcatctac ccaaacaggg
    25741 gtatcttttg gagctgtcat actcatgttt tttcctttat taacctaata ttttttgaat
    25801 ttcttcacca atcaaagccg gagaatccac cacatgaatt ccatagcttt ttaaagcttc
    25861 ttttttagct gcagcgcttt catcagcact tcctactatg gcacctgcat gccccattct
    25921 tttgccttta ggagcagttg cacctgcaat gaatgctacc acaggtttgc taatattttc
    25981 tttaataaat ttagccgctt ccacttccaa actaccacca atttcaccta tcattacaat
    26041 aactttagtt tcatcatctt tttgaaattc acttaaaagt tctttataag caagacctat
    26101 gataggatca ccaccaattc ctactgcagt agaaattcca taaccacctt gaactacctg
    26161 attagcagct tcataagtta aagttccact ttttgaaata agccccacgc aacctttttt
    26221 aaaaataaaa cctggcataa tacctaactt acattcttca gaagtaataa tacctggaca
    26281 atttggtcca atgattttca tacccttttt attagcatat tgcttagcaa acatcatatc
    26341 ctttacaggc gtatgctcgg tgattacaac tgcaagctta atacccgcat cagctgcttc
    26401 aatcacgcta tcacccacag caaaagcagg gacaaagatc aagctcacat cagtctttgt
    26461 tgctttaacc gcatctgcaa cggtatcaaa aactggttta cctaaatgag tttgtccgcc
    26521 tttatgaggg gtgacacctc caactatatt tgtaccataa gccatgcatt gctcagcgtg
    26581 aaaagttgct tctttacctg taaaaccttg aactattact tttgtatttt tattaaccaa
    26641 tatactcatt ttccatcctt atcctactaa actttttaca agctctgcac cgtttttaag
    26701 attggttgct gctttgatat ttttaagatt tgaattatct aaaattgtct ttgcttctgc
    26761 tgcgttagtg ccatcaagac gcactacaat tggaatattt acctcaacat tcttagtagc
    26821 ttctaaaatt ccatttgcta tcctatcaca acgaacaata ccaccaaaga tattgataaa
    26881 tataactttt acatttttat ctcttaaaat aatttcaaaa gcctttgcaa cagtttctgg
    26941 agaagctccc ccacctacat ctaagaaatt tgcaggtttt gcaccactat aattaataat
    27001 atccatagtt gccattgcta gacccgcacc atttaccata caagctacat ctccatctaa
    27061 tttcacatag cttaagccaa attcagccgc ttctctttca gcaggatttt cttcagtagt
    27121 atctctaagt tcagcaattt caggatgacg ataaagcgca ctatcatcaa aactgcattt
    27181 tgcatcaagg gcataaaaat ccccttctgc agttttaatt aaaggattga tttcaagcat
    27241 attcatatct ttatccatgt aaagcttata aagtttagct aacatagaaa tgagtttttt
    27301 gccttcatct ttatcaagtc ctaaaactct cgctacttca agtccatgaa acattttaaa
    27361 tccaatttgt ggatcaatac ctacttttgc aattttttca ggactttctt tggctacttt
    27421 ttctatatcc atccctcctt cacttgaagc gataatggta atttgctctg ccattctatt
    27481 aaataaaata gccaaataat actcttttac tatattagcg ccactttcta tataaagttt
    27541 ttgcacaagt ttgccttcag gtcctgtttg atgagttact aaattcattc ctaaaatttt
    27601 acttgcgtaa tcttttacct catctaaatt cttagcgatt ttaacaccac caccaagacc
    27661 acggcctcct gcgtgaattt gagctttaac tgcccaaaca ctaccgccta attctttagc
    27721 attagccaca gcttcatcta cgctaaatgc aacttttccc tttaaggtag ggatgccatt
    27781 gtctgcaaaa attgcttttg cttgatactc atgtatgttc atttattctc ctttatattg
    27841 atatttgatt aaagattttt ctaatttgtc tttttcttgc aaactaagat ccattttcat
    27901 gatttcaatc acaccttcaa gtcctaatct tgccataact cccaaggctt tgttttgcac
    27961 tccaaattct ccatgtaaaa tcacactcat aggtaaaaac tcgccacttc ttatagactc
    28021 aagcattctt atacaagcac tagcaggggc taaataagct gaagttttaa gatgtttgat
    28081 tactttagct ccacctgttt taacttcatt ttctaaatcc tcaaattctt cttcatttaa
    28141 aaattcgctt atatttttat ttttaacact tgcgtaagat tttaccaaaa ccatatcatc
    28201 attatgaaaa ccaataagtc ttgtatccac tcttgacatt ttgacattaa gttttttggc
    28261 aagctcatac ttaaatcttg cattgtctaa aacacccgcc atggctataa ttttctttga
    28321 tgaaaaaatc ccgctttcat aaagagtatt aagtagaaaa tccacaggat tagttaaaat
    28381 aataaaaagc ggatcttctg taaaatcttt aattttttta gcacaatcaa gcataatgct
    28441 tgtatttaac tgaagcaatt cttctctact ttgcccatct tttctagcaa aacctgcact
    28501 aaaaagcact atatctgaat ttttggtata agtataatct ttagtgcaaa gtaaatctat
    28561 atttaaattt aaagcagcta tgctttgagt aagctctagt tcttttgcgt aaagcaaatc
    28621 ctcgttaata tctactaaaa caatttcatt tgctatttct cttaaaatca aagcataagc
    28681 tatgcttgaa cctacattgc cagcccctat aacagtgatt ttcatctttg tcctattttt
    28741 tctaaaatag cgttaaaagt tgcacttgga cgcatgattt tatttgcttt ttcatcatca
    28801 aatttataat acccacccaa atccactttc acaccttgtg catcgttaaa ttcggctctg
    28861 attttttctt cattagaaga aagctctagg gcaatatctt taaaaaagct ttgaagctcc
    28921 atatcacttg cctgtcttgc taaatgattt gcaaaataca ttgctaaata aaaatgactt
    28981 gttctattat catcttcttt gacttttctt gatggagctt tattattttc aagccattcg
    29041 cctatagcct catcaagaca ttctgctaaa accttagctt tatgattgcc acacttattt
    29101 gcataaaatt ccaaacttgc ttgcaaagcc aaaaattcac ccaaactatc ccaacgcaga
    29161 tgattttctt cgactaattg ttctacttgt ttaggtgctg aaccccctgc tcctgtttca
    29221 aacatagctc caccatttaa cataggcaca acagaaagca tttttgcact tgttccaagc
    29281 tctaaaatag gaaaaagatc ggttaaataa tcccttaaaa cattacccgt gatagaaata
    29341 acatctttac cttctcggat taactctaaa cttcttaaac aagcttcttt tggagttaaa
    29401 atggctacat ttttaccctt ttcttttaaa cgattttgta ccaaagttat catgatttta
    29461 ttactagctc ttttgctatc taaccaaaaa atagcttcgg ctccactaag ttctgatctt
    29521 tctataccta aatcaatcca atttaacact gcatcaaatt tagcctgatt agctctataa
    29581 atatcacctt ttctaacctt atgttctaat aaaactttac cgttagaaac tattttaaaa
    29641 gttccttctt ctttagccat aaaggtttta tcgtgcgatc catattcttg agctttttta
    29701 gccattaaac ctacattaga tacactgcca agttttgaag gatttaaagt accattttta
    29761 tgcaaatctt caataactgc ctcataaata gttgcgtaag tttgatcagg aattacagca
    29821 tttgtgtcct tttccttacc ttccttatcc cacaatcttg cgccattttt aagcattgca
    29881 ggcatagaag catcaacgat aacatcgctt ggaacatgaa gatttgtaat gcctttatct
    29941 gaatttacca tagaaatatc tgcagattta gctaaaattt cattgtattt ttttaaaatt
    30001 tcatcttttt tgcttgaatt ttcgatctta cttaaaagct cacttaaacc attatttgga
    30061 ttaatgccta atttttcaaa ttcatcttga aattcgataa ataattcttt aaaaaatact
    30121 tttaccgcat aaccaaaaag tataggatca cttactttca tcattgtagc ttttaaatgc
    30181 aaagaaaaaa gcacatcatc atctttgctt gctttaattt cttttgcata aaattcctga
    30241 agtttttgca catccataaa agtagcgtct aaaatttcat ttttttcaag ttttaagccc
    30301 tcttttaaaa tttctttttt accatcaacg cttgtaaatt ctatattagc cacacaatct
    30361 tgatcgatta aaaccgcttt ttcattagag aaaaaatccc cttctttcat ataagaaaca
    30421 cgagtttttg agtttggatt aaactcaacc acacgataag gattgttttt tgcataatct
    30481 tttaccgctt ttgttgaacg acgatctgaa tttccttgtc ttaatacagg attaaccgct
    30541 gaacctaaaa ctttttgata ttttgtttta atttgcaatt cttcatcatt ttttggctca
    30601 tctgggtaat ttggtaacat gtaaccctta tcttgcaatt ctttaatcgc cgccttaagc
    30661 tgaggaatag aagctgaaat atttggggtt ttaataagat ttgcatccga tcttttgaca
    30721 agctcaccta aaagttctaa agcatcttca catctttgtt cctcttttaa atactcacta
    30781 aaagtagcta aaatccttcc agacaaagaa atatccgagg tttttactcc tatatgtgcc
    30841 ctacttaaaa aagctttcac tataggcaaa aacgaataag tcgcaagagc tggagactca
    30901 tctgttaagg tataagtaat ttgcattttt agtcctttaa aatacttatt tttattttca
    30961 tttttaagta tattacaaat aaaaaaaaat gcaagagtaa gtttaaagtt tgttttagtt
    31021 ttcaaacaaa ctttaaatat ttttaattaa gtaaattagc aggaagttgt atgatatttt
    31081 taataagatt aaaaggggtt tttagagtat ctgttaaaat ttcggtatga aatttagggt
    31141 catctatact tccatctatt tttaagtttg tgctaatttc ttgattttta cctaaaatta
    31201 cataatttaa aattggaacc ttggatatag cttctgaagc tgattttaaa gttttaagct
    31261 ctaaactaaa atccactgta tttaatctta aatttgctga tcctaaacca tatatatcta
    31321 cactatcacc atttaaatta atagccgaaa cacttaaaag atcttttttt ctattaaaaa
    31381 taatctttcc atcatgtaag cttaaacctt tttgattaaa agttggagat ttaaacatca
    31441 ataaacttgg tacagtatcg ataaaggaaa taagctgatt tatacctttt aaatccttca
    31501 cataagtatt tttaaaatcg atctgtccat caaaatactc caatccactt ccttttatac
    31561 ttaagttaaa cactccatct tgaacagctt gtttttgtaa aaactcattt aaataattat
    31621 catcaatatt gctaacgttt aaatttaaat cattagaaga ataataaaga tcaaattttg
    31681 catttcctct agaaccttta agatctaaag cattgccttt taaatcagct tctactctat
    31741 caaaagccaa agttttatta gaatctgcca aaattaaagc tacatttgct ccaccaaaac
    31801 taatattttg ggtattagta gcaatatcaa atgttgaatt tgaagagttg gaatgttttc
    31861 tataaatata acttaaattt tttaaatgaa tttctttatt atcagaactt attttagcac
    31921 ttgctgtatc actttgagta tgaatttcca taatgccctt attttttaca atatcaaagc
    31981 tatcattttc ataaggagtt tgaccgttga taagtaaatt atttttaaaa taagcatcat
    32041 taacacttgc attaaaatct tcaaaattta aagttttata ataaacattt ttagcatcga
    32101 taaacccaag ctttttaagt aatggagaaa atgaaaataa aatcttagga ttattaagat
    32161 tagcctcaag tccatcttta aaatttaaaa tcaaattcca ctgaggaatg ctaatgttaa
    32221 cattttgcga ataatctaat tttacttcta cattttgatt ttttaaatct aaaagctctc
    32281 cattgtcaaa ataaagcctt gaaatctgag tattgaaatt tccttgctgt ttttgtaagt
    32341 caaatttagc attaaaatca gcttctaaaa agccattttt aacactggca ttttctatat
    32401 ttaaatcatt ttgatttaat tttacaaatg cttttgtaat attaaaatca gccaaagaaa
    32461 tactagcatt ctctaaagct aaaataccac tataagaaat ttcaccctta tcatgaaaat
    32521 caattttaag ctccaaatca cttttaattt ttccgctttt ttgataaaaa ggtagtgaaa
    32581 aatgataatc ctctaaagct ttagcaagtt tttcgtcaaa ttttagatta tcagacttaa
    32641 tgcgcaaata aatcccaact tttttttcat caaacaaatc atatagataa accttactag
    32701 aacttaaatc agcaccatta tagaaagctt tattaaagac aaaatcgagc ttttgtttgt
    32761 ttaaatttaa atcgagtttt ggaatttcaa tagcattcat tttatcatcc aagcgaactt
    32821 tgacattatt aacataacct gatgcactaa tattgtctaa ataataatta tctttagtaa
    32881 aatctataaa gccccgcaaa taatctaaat gataaaattc tcccttagcc ctatatgcta
    32941 cccaaagatt taaactctgc ggaagttcta ttcttttatt aactctttta aaaatttccg
    33001 taatatttct aatatttaaa tcttctattt tataagctaa atttttatct ttataagaga
    33061 tacttgcgtt aaagtcaagc aattctccac ttgctctacc ttgaaaataa taaaactcgc
    33121 tcttagtatt gatacttaaa tttccatcaa tatttaaatc ataatctttt aataaaagtt
    33181 ttttaatatc agctataagt tctttatttt gacgctgtaa tgttaatttt aaaaacaaca
    33241 aatcattatc tataaaaaat tcattatctt taaataaaat acgcacatga ttatctttta
    33301 tatttaaatt ttg
//
LOCUS       DBBXPZ010000007        31757 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.007, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000007 DBBXPZ010000000
VERSION     DBBXPZ010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 31757)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31757)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31757
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.007"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..3485
                     /locus_tag="ACJFD7_000247"
     CDS             <1..3485
                     /locus_tag="ACJFD7_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HGG0859097.1"
                     /translation="QKALALAEELQGQIEANISNSEKEFHAKMQKLLNNPKNKVMLIE
                     LLDRSFRCKDKNASFELIEYTLSKYGIADFFSTFEKFLLFSFLNFGKFAPNLSVPFFV
                     KYLREDTKAMVLDANPSVLEPHIKKRKEQDKITLNVNLIGEEVLGEAESKYRMQKYEE
                     ALKSSYITYISIKITTIFSQINIIDFNYSKEEVVKRLDYLYALALEEEKKQGVSKFIN
                     LDMEEFRDLELTVAAFMESVAKFDIKAGIVLQAYIPDSYKYLKKLFAFSKERVLKGMK
                     PIKIRFVKGANMESEETIASQRGWELPTFYKKIDTDSNYNKMLDFILEGDNYKYINIG
                     IASHNIFEIAYAYTRISEVGALDSFTFEMLEGMSLQCSYELSKMHDLILYAPVCDEAH
                     FNNAIAYLVRRLDENTSEDNFMRYFFNLKVGDKNWNIQKELFLKSLEGIKTLDNTTHR
                     KQDRNKESNIISSYESKKFSNESDTDFILAQNRAWAKEIKTKYENLKDYDVYPVIGEL
                     DFKAENLNVLEVKDKIEDRVIGKAYLAGEKEIKQALEVAKNSKFTQKSHDEIYQILAK
                     SAKLMRERRGDLIGLAALEVGKTFLEIDPEVSEAIDFIEFYPHSLEELKKQNPKVTFT
                     PKGIGVTIAPWNFPIGISVGTIAAPLAAGNVVIYKPSSLSTLTGYMLCKCFWDSGIPK
                     DALIFLPSKGSDISKYLLIDEAIKFSILTGGEDTAYAMLKANPTLLLSAETGGKNATI
                     VSKFADRDSAIKNIIHSAFSNSGQKCSATSLLVLEEEVYHDEEFKKTLVDAASSMAVG
                     NPFEFKNKLGTLADKPSSKVQKALDELQPYEEWVLKPKFLEDNPYLMTPGIKYGTKKG
                     DFTHMNELFVPILSVMKAKDLKEAIDIVNSTGYGLTAGFESLDEREWEYFHTHIEAGN
                     IYINKPTTGAIVLRQPFGGIKKSAIGLGRKVGIYNYITQFLEIKQEDFDDHLIEDKFS
                     KKLAQIDLKEAQDFINNLIKMSQSYAYHYKNEFSVSKDYVNIRGEDNLFSYTKIKNMV
                     LRLCGNESLKDVLGVVLGANIANIDLSISYDEQDVSMIERIVQSIGAKVLFLKENKEN
                     FIKSIKEYERVRYLAKPDVNDEIYKEAAKLAKIIIREKPLLNGRFELLNYFNEKALSI
                     SFHRYGNLGIRAIS"
     gene            3503..4972
                     /gene="putP"
                     /locus_tag="ACJFD7_000248"
     CDS             3503..4972
                     /gene="putP"
                     /locus_tag="ACJFD7_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005298 - proline:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0031402 - sodium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0015824 - proline transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HGG0859098.1"
                     /translation="MEVVQINTPIAVMFVVYALLMLYIGFYFYRQNKNSEDYFLGGRT
                     MGPVISALSAGASDMSGWLLMGLPGALYVSGFIDSYIAIGLTIGASLNWIFVAKRLRI
                     YTSVIANSLTIPDYFETRFDDDKHILRIVCAVVILIFFTFYVSSGLVSGAKLFESTFG
                     IRYDYALTTGTIIIVAYTFLGGYKAVCWTDMIQGLLMMMALIIVPLVMLYHLGGFGEA
                     MNIVREIKPQALSMGEGVGIVSIISALAWGLGYFGQPHILVRFMSIRSTKDIPMATFI
                     GIAWMAVCLLSACMIGILGIAYVHKFELSLQDPEKIFIVMSQLLFNPWIAGILLSAIL
                     AAIMSTASSQLLVSSSTIAEDFYKKIFREDAPSHIVLNLGKLGVLLVAVIAFLISTDK
                     NSSVLSIVSYAWAGFGASFGSVMLFSLFWSRMTRVGAILGMITGAATVVLWKNFANSG
                     LYEIVPGFLVASVVIIIASLFTNVRSGTKAAYEKMLKEL"
     gene            complement(4988..5215)
                     /gene="yedF"
                     /locus_tag="ACJFD7_000249"
     CDS             complement(4988..5215)
                     /gene="yedF"
                     /locus_tag="ACJFD7_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HGG0859099.1"
                     /translation="MKITYSLNLQGEACPYPAIATLDVLPKLKSGEILEVLCDCPQSI
                     NSIPQDVKNRGFKVLEIDQSGPTLRFLIQKP"
     gene            complement(5219..6427)
                     /gene="yedE"
                     /locus_tag="ACJFD7_000250"
     CDS             complement(5219..6427)
                     /gene="yedE"
                     /locus_tag="ACJFD7_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HGG0859100.1"
                     /translation="MNSFKQKYLINFWDNSRSMIALGILSAVYFGIFGGVWAVTGEMT
                     RWGGEFLELLGMNLDGYSYYQKQNLNGTPLTRTDGIMLIGMFIGCLVAALLANKVKFR
                     LPASNIRIFQAIVGGILSGYGARLAFGCNLANFFTGLPYFSLHTWLFTVFMVLGIYLG
                     VKICNTSFFKPKAKLERVNKENLPLNKQSLRTKLYFNLGILLFIAFLVWVFYLVFTNG
                     NISTQNKQSLLALALIFGFVFGFVISRGQICFTSCFRDLFLFGRDNAIKGALIGMIIA
                     SLIAFAFILQGHTSKLIELSPAVAVGAFLFGFGIVFAGGCECGWTYRAFEGQSHFMIV
                     GIANIIGTMILALSYDFLPKAFKEGIKINLLTEFGNLNGFFINLILFILMFVFVVFYK
                     KHFFKNQLKG"
     gene            6567..6664
                     /locus_tag="ACJFD7_000251"
     tRNA            6567..6664
                     /locus_tag="ACJFD7_000251"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6601..6603,aa:Sec,seq:tca)
     gene            6692..7942
                     /locus_tag="ACJFD7_000252"
     CDS             6692..7942
                     /locus_tag="ACJFD7_000252"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HGG0859101.1"
                     /translation="MSKADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTI
                     WVNGVRYALHLMPSGVLHPRCINIIGNGVVVSPEVLIAEMAQFENLKGRLYISDRAHL
                     NLKHHSLIDIAKEKLKGKNAIGTTGKGIGPSYADKINRTGHRVGELLEPQRLCEALIK
                     DFEANKTFFEMLEIEIPSAEELLADLKRFNEILTPYITDTTRMLWKALDEDKRVLLEG
                     AQGSMLDIDHGTYPYVTSSSTISAGALTGLGLNPKEAGNIIGIVKAYATRVGNGAFPT
                     EDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLMKLDVLDGF
                     EKIKICRAYEYKGMEIDYIPSDLENVQPIYEEMDGWDKVFGIKDYDLLPENAKKYIAR
                     LEELAGVKVKYISTSPERDDTIIL"
     gene            7939..8367
                     /locus_tag="ACJFD7_000253"
     CDS             7939..8367
                     /locus_tag="ACJFD7_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export protein FliJ"
                     /protein_id="HGG0859102.1"
                     /translation="MKSKYNSVVKVRKQQLDKAESNLNQAKQRQLEHEKAYELSRQEC
                     ESLGVLPKSGSIAELRSNLSMAQVGREALARAKEKVELSKKEMNHYQFLYQKAHLDYE
                     KMKVLEAEEIKQKQKELAKAEEKFLDEIAISRFFKGEKDD"
     gene            8360..8878
                     /locus_tag="ACJFD7_000254"
     CDS             8360..8878
                     /locus_tag="ACJFD7_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotE family protein"
                     /protein_id="HGG0859103.1"
                     /translation="MIKKFILLVFISSVVFGAEQDCEQYFEARKTQIELQTREFDEAR
                     QSLEAYKASFEALQKERLENLEKKEAEVNATLAKIEELKLENARLVEEQQKILNLIND
                     KTQGRVKEIYSQMKDAAIADVLSQMDAEDASKIMLSLESRKISGVLSKMDPKKASELT
                     LLLKNLDNNASN"
     gene            8971..9522
                     /locus_tag="ACJFD7_000255"
     CDS             8971..9522
                     /locus_tag="ACJFD7_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF507 family protein"
                     /protein_id="HGG0859104.1"
                     /translation="MRIKLPHIPYIANKMMLDIANSSFVEIKDQLEKLKVCIIEVLEK
                     DILNERKLDERVKELLEQQEDEMELMQVDRKNMFWLVKKKLAPEFNVILDSEDRHNHL
                     AHQILEELVENDYINFIVSENRVKNLIFSSIESYLKIYEKLEDEVYEKISNYKTKPIP
                     GSEEYDLIFEKLYQEELRKKGMF"
     gene            9522..10640
                     /gene="carA"
                     /locus_tag="ACJFD7_000256"
     CDS             9522..10640
                     /gene="carA"
                     /locus_tag="ACJFD7_000256"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006541 - glutamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HGG0859105.1"
                     /translation="MKAYIYLENDIFLSAKAFGKSGTFFGELVFNTSLTGYQEIISDP
                     SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEK
                     HGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVS
                     TKKNYSHKQGVWNASFQKFNDAKRSEKKVAVIDYGVKTNILNELVEVGFEVEVYPYNV
                     KADELITLYKKGEIQGVFLSNGPGEPRILKQEIAEIKKLAEAKIPMLGICLGHQLLSN
                     AFGYETYKMKFGQHGANHPVINLDTKTVEITAQNHNYNVPEELAQVAHITHRNLFGDN
                     VEGVRYKDYPIISVQHHPESSSGPHESKYIFKEFMNLM"
     gene            10637..11296
                     /locus_tag="ACJFD7_000257"
     CDS             10637..11296
                     /locus_tag="ACJFD7_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HGG0859106.1"
                     /translation="MSIDFLAIISVAFLSSFGHCYSMCGGFNLLFINLNSKSNNLFLL
                     TFIYHLFRIFAYIVLGIIFGTFGNILAINAKVQSLSFFILGIFMMILGFALIFRGNML
                     SFIENNVFFDSFVKKIIKKSKNFKGLKSAIFLGFSNGFVPCGLVYFFIANAMSKQNIF
                     EGILVMMIFGISTLPAMLFFSKISQFFSDFLKNLFNYLSYGVIVCYGINLAYIGFKAF
                     Q"
     gene            11293..12504
                     /gene="bumS"
                     /locus_tag="ACJFD7_000258"
     CDS             11293..12504
                     /gene="bumS"
                     /locus_tag="ACJFD7_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="butyrate sensor histidiine kinase-like
                     phosphatase BumS"
                     /protein_id="HGG0859107.1"
                     /translation="MKDFFKDQFFKALEKNTIFSRADVQGNLIFVSDKLCQISGYSKK
                     ELIGKKHSIFKHPDVEECYIEELLKKLSYKKPYQVIFKNIDKLGKTFYLETLLIPILD
                     KNNELIEIVAFSHDVSNSFKLNEELALNHAKLRELSINLENTVKNHQQEFIQLGKKFE
                     KKMQIALEKNEKDIKIAYEEILKSSLEQMISDIAHQWRQPLNELGIAMFQMKQNLKDE
                     KGFAEIYSQSKDMIKNMSETIDVFRTLFNKGVEQCVFIKETLNKALEIAFETIEKNHV
                     NINIVSKSDYEVLAYENGLIRVFLNLILNSIEAFKNKKRKIITINFSKFGKNYLKITI
                     KDNAGGIDKENLDKIFQPYFTTKHPSQGIGVGLYISRQIIESFQGKIKVKNGKDGACF
                     EIFLKLKERVE"
     gene            12507..13187
                     /gene="bumR"
                     /locus_tag="ACJFD7_000259"
     CDS             12507..13187
                     /gene="bumR"
                     /locus_tag="ACJFD7_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="butyrate response regulator transcription factor
                     BumR"
                     /protein_id="HGG0859108.1"
                     /translation="MSQECKELIILVVEDEVKARESMINILSERFSKVIGAQNGDEGL
                     KKFKKFKPDLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGI
                     DKYLIKPVDIEELFKVLDYLIGEKIEANMLVKISEEYQFNKTKRTLIYSGEEIVLTKK
                     ELAFISLLLKQPGALVLHEDIKKNVWIGEHVSDTAVRTFIKRVRDKVGEDFIKNVPSL
                     GYKININK"
     gene            13313..14779
                     /gene="ccoN"
                     /locus_tag="ACJFD7_000260"
     CDS             13313..14779
                     /gene="ccoN"
                     /locus_tag="ACJFD7_000260"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045278 - plasma membrane respiratory
                     chain complex IV [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HGG0859109.1"
                     /translation="MHPGNVLNYDYTVTRYFMFATILFGIVGMAIGTLIAFQMAYPNL
                     NYLAGEYATFSRLRPLHTSGVIFGFMLSGIWATWYYIGQRVLKVSMAESRFLMAVGKL
                     HFWLYMLTMVLAVISLFMGVTTSKEYAELEWPLDILVVLVWVLWGVSIFGLIGIRREK
                     TLYISLWYYIATFLGIAMLYLFNNMEVPTYFVTGMGKWWHSVSMYAGTNDALVQWWYG
                     HNAVAFVFTVGIIAQIYYFLPKESGQPIFSYKLSLFAFWGLMFVYLWAGGHHLIYSTV
                     PDWMQTMGSVFSVVLILPSWGSAINILLTMKGEWSQLRESPLIKFMILASTFYMFSTL
                     EGPILSIKSVNALAHFTDWIPGHVHDGTLGWVGFMTMAALYHMTPRVFKRELYSKSLM
                     EAQFWIQTTGIVLYFASMWIAGITQGMMWRATDEYGNLLYSFIDTVVAIVPYYWIRAI
                     GGLLYLIGFFMFTYNIYKTIACGRVLDKEPKSASPMAA"
     gene            14792..15457
                     /gene="ccoO"
                     /locus_tag="ACJFD7_000261"
     CDS             14792..15457
                     /gene="ccoO"
                     /locus_tag="ACJFD7_000261"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HGG0859110.1"
                     /translation="MFSWLEKNPFFFAVAVFVVIAYAGIVEVLPNFAENARPIEGKKP
                     YTVLQLAGRAVYIKDSCNACHSQLIRPFKSETDRYGMYSVSGEFAYDRPFLWGSKRTG
                     PDLARVGNYRTADWHENHMWDPTSVVPDSIMPSYKHMFKNNADIETAYAEALTVKKVF
                     NVPYDAENGTKLGSWEDAQAEVKAEAQAIVDQMKNQEVKDAFAKGEIKEIVALIAYLN
                     SLK"
     gene            15462..15725
                     /locus_tag="ACJFD7_000262"
     CDS             15462..15725
                     /locus_tag="ACJFD7_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase, cbb3-type, CcoQ subunit"
                     /protein_id="HGG0859111.1"
                     /translation="MEHLSIVFDVIKNLITFDLATVQKHEWEIFQGYGFFALVMFLSI
                     VLYAYLYHLYRTEKKGERNYENYANLALKDDIDDSVLESKRSA"
     gene            15725..16588
                     /locus_tag="ACJFD7_000263"
     CDS             15725..16588
                     /locus_tag="ACJFD7_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase N-terminal
                     domain-containing protein"
                     /protein_id="HGG0859112.1"
                     /translation="MQWLNLEDNVNLLSLIGAILIILITLVIVGRMFKQMKEKKGKSE
                     LSEHSWDGIGEYKNAVPTGWAVVFFLTIVWAIWYFLWGYPLNSFSSIGQYNEEVATHN
                     TKFEEKFKNLSPEDKIAMGQNIFLVQCSACHGITGDGINGKAQNLNIWGSEEGIINVI
                     KHGSKGMNFPGGEMLGAADLGVAEEDIPAIAAYVAKDLSAIKKTANENLVAKGKEAYA
                     TCAACHGEDGKGQDGMFPDLTKYGSTAFVVDVLHSGKAGFIGTMPSFPTLNDIQKEAV
                     GEYVISLSRGE"
     gene            16585..16806
                     /locus_tag="ACJFD7_000264"
     CDS             16585..16806
                     /locus_tag="ACJFD7_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4006 family protein"
                     /protein_id="HGG0859113.1"
                     /translation="MMENNNRCVFSLSGVTGMLIATVLLLAILVVLTIWGLKAQQEVM
                     QKPYSLKDVQSVKMFGSKEQDHRSIKEAQ"
     gene            16803..16904
                     /locus_tag="ACJFD7_000265"
     CDS             16803..16904
                     /locus_tag="ACJFD7_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859114.1"
                     /translation="MSKALEYLIVIGLVVAAAITAWSVLTVNHLHIG"
     gene            16901..17503
                     /locus_tag="ACJFD7_000266"
     CDS             16901..17503
                     /locus_tag="ACJFD7_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859115.1"
                     /translation="MKKILQDGFFLAIFFFVLLPSRVFALDAVLFNENILSQKVSNEI
                     NLIGKELYQKSNIFIGVMVGDKTEIETLLNKQKELPQSYILLLLSKNSHKVDIVGSKG
                     ALALIDKEAVLSPYPGTGSILPILATNKGDIYNAAILNGYADIVDRVAKSLGLQLEHS
                     IGNANRDTINILRILIYGFICFALLYYAQRRIKRKKNVRN"
     gene            17490..18011
                     /locus_tag="ACJFD7_000267"
     CDS             17490..18011
                     /locus_tag="ACJFD7_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FixH family protein"
                     /protein_id="HGG0859116.1"
                     /translation="MLETKKSFWPYGILLSLLAIIIACIVTIFIASHHPVYEDDFYFD
                     SYQNVENNYNQIQKQQVNFDKFFKVNFQNDKITFIGKRKIPSYEVDQNSYVANFKISA
                     LQNINSNDLKVQVLLTRPFTKNFDQKLEGQVKNGILSIALPKLDKGRWELKLKFYANQ
                     ETVGFFSYELNAQ"
     gene            18008..20374
                     /locus_tag="ACJFD7_000268"
     CDS             18008..20374
                     /locus_tag="ACJFD7_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HGG0859117.1"
                     /translation="MKLRIFSSSRQIREYYNQKKQQNALLDSAIHIGEFLDKVCLSNF
                     HKASSYESLLLMQEACLKSKDLEKKLGISVEFFAFLKNNEYLFSFFKELSLEKKSIED
                     LKNNDYYATYNEHLEILDEVYKNYLALLEKNSFYDDLSLPKNYTLNKDFLDEYEAIVY
                     DLQGFLSKFEENLLSEISQIKEVVLSFKTSKFNLEYLLKLDFLKIFDLKINTHYEINL
                     SKQEILKEEIFKTKNSKMKLKSFELRALQCAFVMDEISHFVRKGLKPENIAVITPDES
                     FCEFLRLFDKDNMLNFASGISIKESLFYQKFQALYESASSASFVYKNQEDYFEDTQMI
                     FDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFEKLLVLFLENEKQELIYLIRKELYFIK
                     DLLKNQSLTLKELIHLFFMQISQLSLSDVGGGKVTVMGLLESRGLCFDGVILVDFNEE
                     FIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNALEVSICFVENEEKSK
                     SRFLDELDFDFFYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFPLSFSR
                     FNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHKMLEIYYKNYANNDFDIKV
                     FANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEHFSKGFYVAHTELELNNILKLGT
                     DSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSYQLAFYQALYDENASVGFYDLNSMQ
                     ILHQKAKSLDELRERLKDLVLMSKEEIEFENEQDEYCPYKLIYKKELK"
     gene            20371..23136
                     /locus_tag="ACJFD7_000269"
     CDS             20371..23136
                     /locus_tag="ACJFD7_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RecB-like helicase"
                     /protein_id="HGG0859118.1"
                     /translation="MSQFEPFLALEASAGSGKTFALSVRFVALILKGARINEILALTF
                     TKKAANEMQKRIIETFLNLEKENKTSECNELCKLLGKDKEELISLRDAKKEEFLRTEL
                     KISTFDAFFGKILRVFALNLGLSSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLV
                     DEKENFFNELEKFYENAYFQNRPKILNPTKAYINKAYSELRSYCLGLTHVKNYKNLCD
                     NFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAKRMELINALNTYAIELENY
                     KIANLMNLLNHYSEAKNIFHKDKNTLNFQDASKKVYELITSEFKDMIYFRLDGFISHL
                     LIDEFQDTSVIQYQILRPLIAELVSGEGVKKNRTFFYVGDKKQSIYRFRKGKKELFDL
                     LKQEFSQIKSDNLNTNYRSKELLVDFVNETFKEKIKDYKEQFALESKKGGFVRIVESK
                     EQKVKNQAQEIKEKTLETLFEQINFLRSKNISYDDICILCWKNSDADMVLDFLREQNI
                     PAFTQSNVLLENKASVRLVLEYAKYCIFGDEFYLVFLKELLGFEPRKITLDFSKNAME
                     NVLFLIKELKLDLNDIALIQFIEYAKTKENFLKLLFEPCALKIVSEQNMGISIMSVHK
                     SKGLEFDHVILLDSLSKNNSNNEDIMLEYDINQGWQLHIKDKIRELTKEPIYTLFKEN
                     ITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQERGFLE
                     SKEQILSVKKESIQTLQKFEKITLQEIQSEERLDSKELYFGNAFHFFMQNLKLPKGEN
                     FQILTQRCKSKFRHFLDESDFEKLFKRIEILLKNIQFQNLIGDGKLLKEQALSFNGEI
                     KQLDLLALKDEEAFIIDYKTGLAMQDKHKEQVGTYKIAISEILQKDKVRAFIVYCLEN
                     EIQILEI"
     gene            23220..23645
                     /gene="rplM"
                     /locus_tag="ACJFD7_000270"
     CDS             23220..23645
                     /gene="rplM"
                     /locus_tag="ACJFD7_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HGG0859119.1"
                     /translation="MTKITKPNEVKREWIVLDAEGKRFGRLLTEVATILRGKNKPCFT
                     PNVDCGDYVIIINASKAVFTGANKAEDKLYHRHSGYFGSVKSEKFGDLLEKNPAKLYK
                     LAVRGMLPKTNLGRAMLKKLKIYAGSEHPHTAQIAKEGK"
     gene            23648..24037
                     /gene="rpsI"
                     /locus_tag="ACJFD7_000271"
     CDS             23648..24037
                     /gene="rpsI"
                     /locus_tag="ACJFD7_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HGG0859120.1"
                     /translation="MATTYATGKRKTAIAKVWVKPGSGKISVNGVDLNTWLGGHEAIK
                     LKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGL
                     LTRDSRTVERKKYGRRKARRSPQFSKR"
     gene            24162..25121
                     /gene="cadF"
                     /locus_tag="ACJFD7_000272"
     CDS             24162..25121
                     /gene="cadF"
                     /locus_tag="ACJFD7_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding outer membrane protein CadF"
                     /protein_id="HGG0859121.1"
                     /translation="MKKIFLCLGLASVLFGADNNVKFEITPTLNYNYFEGNLDMDNRY
                     APGIRLGYHFDDFWLDQLEFGLEHYSDVKYTNTNKTTDITRTYLSAIKGIDVGEKFYF
                     YGLAGGGYEDFSNAAYDNKSGGFGHYGAGVKFRLSDSLALRLETRDQINFNHANHNWV
                     STLGISFGFGGKKEKAVEEVADTRPAPQAKCPVEPREGALLDENGCEKTISLEGHFGF
                     DKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDNIGSRAYNQKLSERRAKSVANEL
                     EKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAKFILR"
     gene            25121..25762
                     /locus_tag="ACJFD7_000273"
     CDS             25121..25762
                     /locus_tag="ACJFD7_000273"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HGG0859122.1"
                     /translation="MNKTILFDLDGTLIDSTDAILNSFQGAFKALGLTSKNNEEIKNL
                     IGYPLEQMFRMLYPDKVNLSKEFVLAYCEIYAQIYLEQTTLLPKAKEALELGSEIADL
                     GIVTTKGGKFTPILLDYLGVKKFFKTLITLEDVTNPKPSSEPIILALKRLNKTQENAY
                     MIGDTILDIQAAISANITPLALTCGYGNENELKTHSMVFLNAYEAVNYIARLN"
     gene            25855..29415
                     /gene="nifJ"
                     /locus_tag="ACJFD7_000274"
     CDS             25855..29415
                     /gene="nifJ"
                     /locus_tag="ACJFD7_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016903 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HGG0859123.1"
                     /translation="MGKIMKTMDGNEAAAYAAYAFTEVAGIYPITPSSPMADYTDMWA
                     AAGKKNLFGVPVKIVEMQSEAGAAGSVHGSLQAGALTTTYTASQGLLLKIPNMYKIAG
                     QLLPCVIHVAARSLAAQALSIFGDHQDIYAARQIGFAMLCSHSVQETMDLAGVAHLAT
                     IKGRVPFLHFFDGFRTSHEIQKVEVMDYAHFDRLLDREALLEFRNNALNPENPKTRGT
                     AQNDDIYFQTREVSNRFYDALPDVVNEYMQEISKITGREYKPFTYYGHKEPERMIVAM
                     GSVTQALEEVVDYLNAKGEKVGILKVYLYRPFSLKYFFDVMPKSVKKIAVLDRTKEPG
                     SLGEPLYIDVKSAFYGRENAPVIVGGRYGLSSKDVDPAQMIAVFENLKLDNPKDGFTV
                     GIVDDVTHTSLSTGEKISLGDESTIECLFYGLGADGTVGANKNSIKIIGDKTDFYAQA
                     YFAYDSKKSGGYTRSHLRFSKKPIRSTYLVSTPHFIACSVAAYLEIYDVLAGIRKGGT
                     FLLNSIWNAEETIRQLPDAVKKTLAEKEVNFYIINATKLARDIGLGNRTNTIMQSAFF
                     KLAKIIPYEDAQKYMKELAYKSYSKKGDAIVEMNYKAIDVGADGLVKVEVDPNWKNLE
                     LKEKEQTNAYKGTEFVEKIVKPMNAAKGDDLPVSAFLGYEDGSFEHGTTEYEKRGVGV
                     MVPRWIEANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKDHALEAKGTKGEKLS
                     FKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADYLFKEITYKDDIL
                     NKETTKGAQFAQPLFEFHGACPGCGETPYITLITRLFGERMIVANATGCSSIYGGSAP
                     STPYRKSVKNGHGPAWGNSLFEDNAEFGLGMKIATENTRHRIEHIMNESMQEVPNALS
                     ALFKDWIANKDNGAMSVEIKDKMIPILEQNKNIKAVQDILELKQYLSKKSHWIFGGDG
                     WAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQSSKSSRTGAVAQFAAAGKPIQK
                     KDLGQIAMTYGYIFVAQVNSTANYTHLIKAITAAEAYDGPSLVICYSPCIAHGIKGGL
                     GYSGEQGELATKCGYWPLYTFNPRLEEQGKNPLTLTGKEPDWDLYEQFLMNEVRYNSL
                     KKANPEHAAELFERNKKDAQRRYRQLKRIAMADYSNEVES"
     gene            29439..29750
                     /locus_tag="ACJFD7_000275"
     CDS             29439..29750
                     /locus_tag="ACJFD7_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HGG0859124.1"
                     /translation="MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRH
                     IKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKEIKFQYDNLEIAIQINKNDKINI
                     N"
     gene            29728..31140
                     /gene="mshL"
                     /locus_tag="ACJFD7_000276"
     CDS             29728..31140
                     /gene="mshL"
                     /locus_tag="ACJFD7_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pilus (MSHA type) biogenesis protein MshL"
                     /protein_id="HGG0859125.1"
                     /translation="MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAK
                     YCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFNFFIKEHDLSYDFDGKILRISGI
                     NTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
                     KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIID
                     VSILAVSLNESHSSGINWQNFNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDS
                     IINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGTTVSESYNN
                     YSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSS
                     VVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITP
                     SIVDSVNAPSLKDLGFKHYE"
     gene            31133..31741
                     /locus_tag="ACJFD7_000277"
     CDS             31133..31741
                     /locus_tag="ACJFD7_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HGG0859126.1"
                     /translation="MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLA
                     KKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILDEVGMYDYAMLESIRIYSDSISF
                     VLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
                     QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR"
BASE COUNT        11432 a         3811 c         5820 g        10694 t
ORIGIN      
        1 tacaaaaagc tttagcctta gctgaagaat tacaaggaca aatagaagcc aatatttcaa
       61 attctgaaaa agaatttcat gctaaaatgc aaaaacttct taataatccc aaaaataaag
      121 ttatgcttat agagctttta gatcgttctt ttagatgtaa agataaaaat gcaagttttg
      181 agcttataga atatactttg agtaaatatg gcatagcgga tttttttagc acttttgaaa
      241 aattcctact ttttagcttt ttaaattttg gcaaatttgc tcctaattta agtgtacctt
      301 tttttgtcaa atatttaaga gaagatacta aagctatggt tctagatgca aatcctagtg
      361 ttttagaacc acatattaag aaaagaaaag agcaagataa aattacctta aatgtgaatt
      421 taatcggcga agaggtttta ggtgaagctg agagtaaata tcgtatgcaa aaatacgaag
      481 aagccttaaa atcaagctat atcacttata tttccataaa aattactact attttttcac
      541 aaattaatat tatagatttt aattattcta aagaagaggt cgtaaaaaga ctagattatc
      601 tttatgcttt agccttagaa gaagagaaaa aacaaggtgt atctaaattt atcaatcttg
      661 atatggaaga atttagggat ttagagctca ccgttgcagc ttttatggaa agtgtggcta
      721 aatttgatat taaagcaggg attgttttgc aagcttatat tcctgattct tataagtatc
      781 ttaaaaaact ttttgctttt tcaaaagaga gggttttaaa aggtatgaag cctattaaga
      841 tccgttttgt taagggtgct aatatggaaa gtgaagaaac cattgcgtct caaaggggtt
      901 gggagcttcc tactttttac aaaaaaatag atactgatag taattataat aaaatgcttg
      961 attttattct tgaaggagac aattataaat acatcaacat aggaattgca agtcataata
     1021 tctttgagat tgcttatgct tatacacgta taagtgaagt gggtgctttg gattctttta
     1081 cttttgaaat gcttgaaggt atgagtttgc aatgttctta tgaattatct aaaatgcatg
     1141 atctaatcct ttatgcccca gtttgcgatg aagcacattt taacaatgcc attgcttatc
     1201 ttgtaagacg ccttgatgaa aatacaagtg aagataattt tatgcgttat tttttcaatc
     1261 ttaaagtagg agataaaaac tggaatatcc aaaaagaact ttttttaaaa tctttagaag
     1321 gcataaaaac tcttgataat actacacatc gtaagcaaga tagaaataaa gaatcaaata
     1381 tcataagttc ttatgaaagt aaaaaattta gcaatgaaag cgatacggat tttattttag
     1441 cgcaaaatag agcgtgggct aaagaaatta aaactaaata tgaaaattta aaagattatg
     1501 atgtttatcc tgttataggc gaacttgatt ttaaagcaga aaatttaaat gttttagaag
     1561 ttaaagataa gatcgaagat agagttatag gaaaggctta tttagcagga gaaaaagaaa
     1621 tcaaacaagc tttagaagta gctaaaaatt ccaaatttac acaaaaaagt catgatgaaa
     1681 tttatcaaat tttagccaaa agtgcaaaac tgatgagaga aagaagaggg gatttgatag
     1741 gtttggcagc tttagaagtg ggtaaaacct ttttagagat cgatcctgaa gtaagtgagg
     1801 ctattgattt tatagagttt tatccgcact ctttagaaga gcttaaaaaa caaaatccaa
     1861 aagttacatt cacacctaaa ggtatagggg ttaccatagc tccttggaat tttcctatag
     1921 gaatttcagt aggtactata gctgcaccac tagccgcagg taatgtggtg atttacaaac
     1981 cttcttcgct ttcaactcta acaggttata tgctttgtaa gtgtttttgg gattcgggta
     2041 ttccaaaaga tgctttgatt ttcttacctt caaaaggaag tgatatttct aaatacttac
     2101 ttattgatga agcgattaaa ttttcaattc ttacaggagg agaggatact gcttatgcca
     2161 tgttaaaagc taatccaacc ttgcttttaa gtgctgaaac tggcggaaag aatgcgacta
     2221 tagtttctaa atttgctgat cgtgatagtg cgattaaaaa tatcattcat tctgctttta
     2281 gcaatagcgg tcaaaaatgt tcagctactt ctttgctagt cttagaagaa gaggtttatc
     2341 atgatgaaga atttaaaaag actttagtgg atgctgcgag ttctatggca gtgggcaatc
     2401 cttttgaatt taaaaataaa ttaggtactt tagctgataa gccaagttct aaagttcaaa
     2461 aggccttaga tgaattacaa ccttatgaag aatgggtatt aaaacctaag tttttagagg
     2521 ataatcctta tttgatgact ccaggcataa aatatggcac taaaaagggt gattttactc
     2581 atatgaatga actttttgta ccgattttaa gtgtgatgaa ggctaaagac ttaaaagaag
     2641 ctattgatat agtaaattcc acaggttatg gtttaactgc aggttttgaa agcttagatg
     2701 aaagagaatg ggagtatttt cacactcaca tagaagcagg aaatatttat atcaataaac
     2761 caaccacagg ggctatagtg ctgcgtcaac cttttggtgg gattaaaaaa tcagctatag
     2821 gtttgggtag aaaagtggga atttataatt atatcactca atttttagag attaagcaag
     2881 aagattttga tgatcattta attgaagata aattttcaaa aaaattagca caaatagatt
     2941 taaaagaagc acaagatttt ataaacaatt taattaaaat gtctcaatct tatgcttatc
     3001 attataaaaa cgagtttagt gtttcaaaag attatgtcaa tattcgtgga gaagataatc
     3061 ttttttctta tactaaaata aagaatatgg ttttaagact ttgtggaaat gaaagcttaa
     3121 aagatgtttt aggtgtggtt ttaggtgcaa atattgcaaa tattgatcta agtatcagtt
     3181 atgatgaaca agatgttagt atgatagaac gaattgttca aagcatagga gcaaaagtat
     3241 tgtttttaaa agaaaataaa gaaaatttta tcaagagtat taaagaatat gaaagagtgc
     3301 gttatttagc aaagccagat gtaaatgatg agatttataa agaggctgca aagcttgcta
     3361 aaatcattat aagagaaaag ccattattaa atggtcgttt tgaactttta aattatttta
     3421 atgaaaaagc tttaagtata tcttttcatc gttatggaaa tttaggcatt agagcaatat
     3481 cttaatgatc aaggagagat tgatggaagt ggttcaaatt aataccccaa tagcagtgat
     3541 gtttgtagtg tatgccttat taatgcttta tataggtttt tatttttata ggcaaaataa
     3601 aaattcagag gattattttc taggtgggcg tactatgggg cctgtgatat ctgcacttag
     3661 cgcaggggct tctgatatga gtggttggct tttaatgggt ttaccaggag ctttatatgt
     3721 aagtggtttt atagattctt atattgcaat tgggcttact ataggagcta gtttaaattg
     3781 gatttttgtg gcaaaaagac ttagaattta taccagtgtg attgcaaatt ctttgactat
     3841 tcctgattat tttgaaactc gttttgatga tgataaacat atactgcgca ttgtatgtgc
     3901 ggtggtaatt ttgatatttt ttacctttta tgtttcatca gggcttgtaa gcggagcaaa
     3961 actttttgaa agtacttttg gtatcagata cgattatgct ttaactactg gaacgattat
     4021 tattgttgct tatacttttt taggtggata taaggcggtt tgttggacgg atatgataca
     4081 agggctttta atgatgatgg ctttaattat tgtacctttg gttatgcttt atcatttagg
     4141 tggttttggt gaagcgatga atatagtaag agaaataaag ccacaagctt tatctatggg
     4201 cgaaggagta ggaattgtaa gcattatatc tgcacttgct tggggtttgg gttattttgg
     4261 tcaaccacat attttagtgc gttttatgtc gattcgttct actaaagata ttcctatggc
     4321 cacttttata ggtattgctt ggatggcggt ttgtctttta agtgcttgta tgataggtat
     4381 tttaggtata gcttatgtgc ataaatttga attaagtttg caagatcctg aaaagatttt
     4441 catcgtgatg tcgcagcttt tatttaatcc ttggatagca ggtattttac tcagtgctat
     4501 tttagcggct attatgagta cggcaagttc acaattgctg gtttcaagtt ctactatagc
     4561 ggaagatttt tataaaaaga tttttagaga agatgcacca agtcatattg tattaaattt
     4621 aggtaaatta ggtgttttat tggtagctgt aatagcgttt ttgatttcta ctgataaaaa
     4681 ctcaagtgtt ttgagtatag tttcttatgc atgggctgga tttggagctt cttttggttc
     4741 tgtaatgctt ttttctttat tttggagtag gatgacaaga gtaggagcga tcttaggtat
     4801 gataacagga gctgctactg tggtgctttg gaagaatttt gcaaattcag gtctttatga
     4861 aatagttcca gggtttttag tagcttcggt ggtgattatt attgcaagtt tgtttacaaa
     4921 tgtaagatct ggaactaagg cagcttatga aaagatgtta aaagagcttt gagaataaaa
     4981 gcctttttta aggcttttgg attaaaaatc ttagtgtggg tccactttga tcgatttcaa
     5041 gcactttaaa accacggttt tttacatctt gaggtatgga attgatactt tgtgggcaat
     5101 cgcaaagcac ttccaaaatt tctccacttt taagcttagg taagacatca agtgttgcta
     5161 tagcaggata aggacaagct tcaccttgta aatttaaact ataagtaatt ttcactgttt
     5221 atcctttaag ttgattttta aaaaagtgtt ttttgtaaaa tactacaaaa acaaacatta
     5281 agatgaataa aataaggttg ataaaaaatc catttaaatt gccaaattcg gttaaaagat
     5341 tgatttttat accttcttta aaagcttttg gcaaaaagtc ataacttaaa gctaaaatca
     5401 tagttcctat tatatttgca attcctacta tcataaaatg actttgtcct tcaaaggcac
     5461 gataagtcca accacactcg caacctccgg caaaaactat accaaaacca aacaaaaatg
     5521 ctcccacagc tacagcagga gaaagttcta tgagtttgct agtatgacct tgcaagataa
     5581 aagcaaaagc gattaaagag gcgataatca taccgattaa tgcgcctttt atagcattat
     5641 ctctaccaaa taaaaataaa tctctaaagc aagaagtaaa acaaatttgc cctctagaaa
     5701 taacaaaacc aaaaacaaaa ccaaaaatca gtgctaaagc tagaagactt tgtttgtttt
     5761 gtgtgctgat attgccattt gtaaaaacaa gataaaacac ccaaactaaa aaggctatga
     5821 aaagcaatat gcctaagtta aaatataatt ttgtacgcaa actttgcttg tttaacggca
     5881 agttttcttt atttacacgt tctaatttag ctttaggttt aaaaaaggaa gtgttgcaaa
     5941 ttttcactcc tagataaatt cctaaaacca taaaaacagt aaaaagccaa gtgtgtaaag
     6001 aaaaataagg taaacctgta aaaaaattag ctaaattgca tccaaatgca agtcttgctc
     6061 catatcctga aagaattcca cctactattg cttgaaaaat tcttatattg ctagcaggta
     6121 gacgaaattt gactttgtta gctaaaagtg cggctactaa acaacctata aacataccta
     6181 tgagcataat accatcagtt cttgttaaag gggttccatt taaattttgc ttttggtaat
     6241 aagaatatcc atctaaattc atacctaaaa gctctaaaaa ctcgccaccc caacgcgtca
     6301 tttctccagt aacagcccaa actccaccaa aaattccaaa atacactgca cttaaaattc
     6361 caagtgcaat catagaacgg gaattgtccc aaaaattgat taaatatttt tgtttaaaag
     6421 aattcaaaga aagatcctaa aaatgtaatc atcaaaactt gatgctaaaa aagagtgaga
     6481 ttatagctta aatttaatat gaagtcaaaa agaatattga taaatttatt ttgtttttca
     6541 ttaaaaatcg ctataattat cactttggaa gattagcgta tctggtgatc gccactgact
     6601 tcaaatcaga tgaaaggata gttgactatt ctttggggag ttcgattctc tcatcttctc
     6661 gccaatatta agtaaaatca aggaaatttt tatgagcaaa gcagatatta ttgtcggcat
     6721 tcaatggggc gatgaaggaa aaggtaaggt agttgataaa ttatgtgaaa attatgattt
     6781 tgtttgcaga agtgcaggtg gacacaatgc aggacatacg atttgggtaa atggtgtaag
     6841 atatgcgctt catcttatgc caagtggagt tttgcatcca agatgtatta atattatcgg
     6901 aaatggagtt gtggtttctc ctgaagtatt gattgctgaa atggctcaat ttgaaaattt
     6961 aaaaggtaga ttatatatca gcgatagagc tcatttaaat ttaaaacatc attctttaat
     7021 agacattgca aaagaaaagc tcaaaggcaa aaatgccata ggaacaacag gtaagggtat
     7081 aggaccttct tatgcagata agattaatcg tacaggacat agagttggag agcttttaga
     7141 accacaaaga ctttgcgagg ctttgataaa agattttgaa gctaataaaa ctttttttga
     7201 aatgcttgaa attgaaattc caagtgctga agaattgctt gctgatttaa aacgttttaa
     7261 tgaaatttta actccttata ttacagatac tacaagaatg ctttggaagg ctttagatga
     7321 agataaaaga gtacttttag aaggagctca gggctctatg cttgatattg atcatggaac
     7381 ttatccttat gttacaagtt caagtactat ttcagcaggc gctttaacag gacttgggtt
     7441 aaatcctaaa gaagcgggaa atattatagg tattgtaaaa gcttatgcaa cgcgtgtggg
     7501 aaatggagct tttcctactg aggataaggg cgaagatgga gaaaaaattg cgcaaattgg
     7561 aaaagagatt ggcgtaagca cgggacgcaa aagacgctgt ggatggtttg atgcggttgc
     7621 tgtaagatat acagcaaggc ttaatggtct tgatgcttta tctttgatga agcttgatgt
     7681 tttagatggt tttgaaaaga taaaaatttg tcgtgcttat gaatataagg gtatggaaat
     7741 cgactatata ccaagtgatt tagaaaatgt tcaacctatt tatgaagaaa tggatggttg
     7801 ggataaagtt tttggtataa aagattatga tttattgcca gaaaatgcta aaaaatatat
     7861 agcaagactt gaagagcttg caggggttaa agtaaagtat atttccacta gccctgaaag
     7921 agatgatact atcatcttat gaaaagtaaa tataattctg ttgtaaaagt aagaaaacaa
     7981 caacttgata aagcagaatc aaatcttaat caagccaaac aaagacagct tgaacatgaa
     8041 aaagcttatg aactttcacg ccaagagtgt gaaagtttag gcgtattgcc aaaatcagga
     8101 tctatagcag agttaagatc gaatttaagt atggcacaag taggacgcga ggctttggca
     8161 agagctaagg agaaagtaga actttctaaa aaagaaatga atcattatca gtttttatat
     8221 caaaaagcac atttagatta tgaaaaaatg aaggttttag aagccgagga aattaaacaa
     8281 aagcaaaaag aacttgccaa ggctgaagaa aaatttttag atgaaattgc aatcagtcgt
     8341 tttttcaaag gagaaaaaga tgattaaaaa atttatattg ttagttttta tttcaagtgt
     8401 agtttttgga gctgaacaag attgtgagca gtattttgaa gctagaaaaa ctcaaattga
     8461 attgcaaact agagaatttg atgaagcaag acaatcttta gaagcttata aagcctcttt
     8521 tgaagctttg caaaaagaaa ggcttgaaaa tttagaaaaa aaagaggctg aggttaatgc
     8581 aactttggca aaaattgaag aattaaagct tgaaaacgca aggcttgtag aagaacaaca
     8641 aaagatttta aatttaatca atgataaaac tcaaggtagg gttaaagaaa tttattccca
     8701 aatgaaagat gcagccattg cagatgtttt aagtcaaatg gatgcagagg atgcaagcaa
     8761 aataatgctt tctttggaat cgcgtaaaat ttcaggtgtt ttatctaaaa tggatccaaa
     8821 aaaagctagc gagcttactt tgcttttgaa aaatttagat aataatgcta gtaattaggt
     8881 gattaaaata atgaaaattt ttcattttta acattctttt accaaaaata agctattatt
     8941 tcaaacatta tcaaataaaa ggtttttaag atgcgtataa aattaccaca tattccttat
     9001 atcgcaaata aaatgatgtt agatatagct aattcttctt ttgtagaaat taaagatcaa
     9061 ttagaaaagc ttaaggtatg tataatagaa gttttagaga aagatattct aaatgaaaga
     9121 aaattagatg aaagagtaaa agagctttta gagcaacaag aagatgaaat ggagcttatg
     9181 caagtagatc gtaaaaatat gttttggctt gtgaagaaaa agttagctcc tgaatttaat
     9241 gtgattttag attctgaaga tagacataat catctagcgc atcaaatttt agaagaactt
     9301 gtagagaatg attatattaa ttttatagtg agtgaaaata gagttaaaaa tttaatcttt
     9361 tcaagcatag agtcttatct taaaatttat gaaaaacttg aagatgaggt ttatgagaaa
     9421 attagcaatt ataaaacaaa acctattcca ggtagcgaag aatatgatct tatctttgaa
     9481 aaactctatc aagaagagct cagaaaaaaa ggtatgtttt aatgaaggct tatatttatt
     9541 tagaaaatga tattttttta agtgctaagg cttttggaaa gagcggtact ttttttggag
     9601 agcttgtatt taacacttct ttaacagggt atcaagaaat tatttcagat ccttcttatg
     9661 cagggcaatt tatcgtattt tccatgccag aaattggtat agtgggaacc aatgaaaatg
     9721 ataatgaaag caaggaaatt tttgcaagtg gtgttttaat gcgtgaatta agttccagtt
     9781 tttcaaattt tcgcgctaaa gaaagtctgc aagattatct tgaaaaacat ggaaaaatag
     9841 gaatttatga acttgatacg agatatctag taaaaatgat aagaaataat ggcaatttaa
     9901 gagctgtaat ttcaactgaa atttcaaata aagaagattt aaaaatcgcc ttagaaaaat
     9961 cagcaaaaat tgatgaagta aattttgtaa aagaagttag cactaagaaa aattattctc
    10021 ataaacaagg cgtttggaac gctagttttc aaaaatttaa tgatgctaaa agaagtgaga
    10081 aaaaagttgc tgttatagat tatggtgtta aaacaaatat cttaaatgaa cttgtagaag
    10141 taggttttga agtagaagtt tatccatata atgttaaagc agatgagttg attactctgt
    10201 ataaaaaagg tgaaattcaa ggcgtgtttc tttctaatgg tccaggtgag ccaaggattt
    10261 taaaacaaga gattgcagag attaaaaaac ttgcagaagc taaaattcct atgcttggaa
    10321 tttgcttagg tcaccagctt ttaagtaatg cttttggata tgaaacttat aaaatgaaat
    10381 ttggacaaca tggagcaaat catcctgtga tcaatcttga tacaaaaacg gtagaaatta
    10441 ccgcacaaaa tcataattat aatgttccag aagaattagc tcaagtggct catatcactc
    10501 atagaaattt atttggcgat aatgttgaag gagtaagata taaagactat cctattattt
    10561 cagtacaaca tcatccagaa agttcttcag gtcctcatga aagtaagtat atttttaaag
    10621 aatttatgaa tttgatgtga gtatagattt tttagctatt atcagcgttg cttttttatc
    10681 tagttttgga cattgctatt ctatgtgtgg tggttttaat ttacttttta taaatttgaa
    10741 ttcaaaaagc aataatttat ttttattaac ttttatttat catttgttta gaatttttgc
    10801 ttatattgtt ttagggataa tttttgggac ttttgggaat atcttggcaa tcaatgctaa
    10861 ggttcaaagt ttgtcatttt ttattcttgg tatatttatg atgattttgg gttttgctct
    10921 tatttttaga ggcaatatgt tatcttttat tgaaaataat gttttttttg atagttttgt
    10981 aaagaaaatt attaaaaaat ctaaaaattt taaaggatta aaatcagcca tatttttagg
    11041 attttcaaat ggttttgttc cttgtggatt ggtgtatttt tttatagcca atgcaatgag
    11101 taagcaaaat atttttgaag gtattttggt aatgatgatt tttggaatat caactttacc
    11161 tgcgatgtta tttttttcta aaatttcaca gttttttagt gattttttga aaaatttatt
    11221 taattattta tcgtatggcg ttattgtttg ttacggtata aatcttgcct atataggttt
    11281 taaggctttt caatgaaaga tttttttaaa gatcagtttt ttaaagctct tgaaaaaaat
    11341 acaatttttt caagagctga tgttcaagga aatttaattt ttgtcagtga taaactttgt
    11401 caaataagtg gatatagtaa aaaagagctt ataggaaaaa aacattcaat atttaaacat
    11461 ccagatgttg aggaatgtta tattgaagaa cttttaaaaa aactttcata taaaaaacct
    11521 tatcaagtta tttttaaaaa tattgataaa ttaggcaaaa ctttctatct tgaaacttta
    11581 ttaatcccca tattggataa aaataatgaa ttaatagaaa tagtagcatt ctctcatgat
    11641 gttagtaatt cttttaagct taatgaagag cttgctctaa atcacgctaa attaagagaa
    11701 ttaagtatta atcttgaaaa tacagttaaa aatcaccaac aagaatttat acagttaggt
    11761 aaaaaatttg agaaaaaaat gcaaattgcc ttggaaaaaa atgaaaaaga tattaaaata
    11821 gcatatgaag agattttgaa atcttcatta gaacaaatga ttagcgatat agcacatcaa
    11881 tggagacaac cgttaaatga gctcggtatt gccatgtttc aaatgaagca aaatcttaaa
    11941 gatgaaaaag gatttgctga aatttactca caatcaaaag atatgattaa aaatatgtca
    12001 gaaacaattg atgtgtttag aactttgttt aacaaaggag tagagcagtg tgtatttata
    12061 aaagagactt taaataaagc cttggaaatt gcttttgaaa ctatagaaaa aaatcatgta
    12121 aatattaata ttgtttcgaa aagtgattat gaagttttgg catatgagaa tggtttaata
    12181 agagtttttc ttaatttgat tttaaattca atagaagcat ttaaaaacaa aaaaaggaaa
    12241 atcataacaa taaatttttc aaaatttgga aaaaattatc tgaaaattac aataaaagat
    12301 aatgctggtg ggattgataa agaaaattta gataaaattt ttcaacctta ttttacaaca
    12361 aaacatccta gtcaaggtat aggagtagga ctttatataa gtagacaaat tatcgaaagt
    12421 ttccaaggaa aaataaaagt taaaaatgga aaagacgggg cttgttttga gatattttta
    12481 aaactaaaag agagggtaga gtagaaatgt cacaagaatg taaagaattg ataatattag
    12541 tagttgaaga tgaggttaag gctagagaat caatgattaa tatattaagc gaacgcttta
    12601 gtaaagtaat cggagctcaa aatggagatg aggggcttaa aaaatttaaa aaatttaagc
    12661 cagatttagt tatcacagat attgctatgc ctattatgga tggactggat atggcaagag
    12721 agattaaaga aatttcagat gatgttccaa ttgttgttct tagtgcgtat tcagagaaag
    12781 agagactttt gcgttctatt gatattggta tagataaata tttgattaaa cctgttgata
    12841 tagaagagtt gtttaaagtt ttagattatc tgataggtga aaaaattgaa gcaaatatgc
    12901 ttgtaaaaat ttctgaagaa tatcaattta acaaaactaa acgaacttta atttacagtg
    12961 gtgaagaaat tgttttaact aaaaaagaat tggcttttat ttctttgctt ttaaagcaac
    13021 ctggagcttt ggttttgcat gaagatatta agaaaaatgt ttggataggt gaacatgtga
    13081 gcgatactgc tgttagaact tttataaaaa gagtaagaga taaagtgggt gaagatttta
    13141 taaaaaatgt gccaagttta ggttataaga taaatatcaa taaataagac tgatttaacc
    13201 ttaaaatata aagcataaca aatgattaac aaaattgttg tttttaagaa aaaatgtata
    13261 attaatattc tataatattc tcttgttatc aaaaatttta aggagaaagt cgatgcatcc
    13321 aggtaatgta ttaaattacg actatacggt tacaagatat tttatgtttg cgaccatatt
    13381 gtttggcatt gttggtatgg ctataggaac tcttatagct tttcaaatgg catatcctaa
    13441 tttaaattat ttagcaggag aatatgccac tttttcaaga cttagaccac ttcatacttc
    13501 aggtgtgatt tttggtttta tgctttcagg gatttgggca acttggtatt atataggtca
    13561 gcgtgttctt aaagtgagta tggctgagtc aagattttta atggctgttg gtaagcttca
    13621 tttttggctt tatatgctta ctatggtttt agctgttata tctttgttta tgggtgtgac
    13681 tacatctaaa gaatatgcag agcttgagtg gcctttagat attcttgttg ttcttgtttg
    13741 ggttttatgg ggtgtaagta tttttggact tattggaatt cgccgtgaaa aaacccttta
    13801 tatttctcta tggtattata tagctacatt tttaggtata gctatgcttt atctttttaa
    13861 caacatggaa gtaccaactt attttgttac tggaatgggt aaatggtggc atagtgtatc
    13921 aatgtatgca ggaacaaatg atgctttagt acaatggtgg tatggacata atgctgtggc
    13981 atttgtattt actgtgggta ttattgctca aatttattac ttcttgccaa aagaaagtgg
    14041 tcagccgatt ttctcttata aactctcttt atttgcattt tggggcttaa tgtttgttta
    14101 tctttgggca ggtggtcacc atttgattta ttcaactgta cctgattgga tgcaaactat
    14161 gggttcggtt ttctctgtag tattgatttt accttcttgg ggttcagcga ttaatatctt
    14221 gcttactatg aaaggtgagt ggagtcagct tcgcgagagt ccgttgatta aatttatgat
    14281 tttggcatca actttctata tgttctcaac acttgaaggg ccaattcttt caattaaatc
    14341 tgttaatgct ttagcacact ttacagattg gattccagga catgttcatg atggaacatt
    14401 aggttgggta ggatttatga ctatggctgc gctttatcat atgactccta gagttttcaa
    14461 aagagagctt tatagcaaat ctttaatgga agctcaattt tggatccaaa ccacaggtat
    14521 agttctttat tttgcttcaa tgtggattgc gggtattact caaggtatga tgtggagagc
    14581 gacagatgag tatggtaact tgctttatag ctttattgat actgttgtgg ctattgttcc
    14641 ttattattgg attagagcga ttggtggatt gttatatctt atcggtttct ttatgtttac
    14701 ttataatatt tacaaaacaa ttgcttgtgg aagagtgctt gataaagaac caaaaagcgc
    14761 ttcgcctatg gcagcataaa aaggagaaaa tatgtttagt tggttagaaa aaaatccatt
    14821 cttttttgct gtagctgttt ttgtagtgat tgcttatgca ggcatagttg aagttttacc
    14881 aaattttgca gaaaatgcaa gaccaattga aggtaaaaaa ccttatacgg ttttacaact
    14941 tgcagggcgt gcagtatata ttaaagatag ttgtaatgct tgtcattcac agcttattcg
    15001 tccatttaaa tcagaaacag atcgttatgg tatgtattct gtaagtggtg aatttgctta
    15061 tgatagacct tttctttggg gctcaaaaag aacaggacct gatcttgctc gtgtaggaaa
    15121 ttatagaacg gctgattggc atgaaaatca tatgtgggat cctacttctg ttgttccaga
    15181 ttctattatg ccttcatata agcatatgtt taaaaataat gcagatattg aaactgctta
    15241 tgctgaggct ttaactgtga aaaaagtttt caatgttcct tatgatgcag aaaatggaac
    15301 aaaacttggt tcttgggagg atgcacaagc tgaagtaaaa gctgaagctc aggctatagt
    15361 tgatcaaatg aaaaatcaag aagtaaaaga tgcttttgct aaaggtgaaa tcaaagaaat
    15421 agttgctttg atcgcttatt taaatagttt aaagtaagat gatggaacat ttatcaatag
    15481 tttttgatgt gattaaaaat ttaatcacat ttgatttagc aacagttcaa aaacatgagt
    15541 gggagatttt ccaaggttat ggtttttttg cactcgtgat gtttttgtca atagtattat
    15601 atgcgtattt gtatcattta tatagaacag aaaaaaaagg cgagagaaat tatgaaaatt
    15661 atgcaaacct tgccttaaaa gatgatattg atgatagtgt attagaaagt aaaaggagtg
    15721 cttaatgcaa tggttaaatt tagaagataa tgttaatctc ttatctttaa ttggagctat
    15781 tcttatcatt ttaatcacac tggttattgt gggtagaatg tttaagcaaa tgaaagaaaa
    15841 gaaaggcaag tcagagctta gtgaacatag ttgggatgga ataggagagt ataaaaatgc
    15901 tgttcctact ggttgggctg tggtattttt cctgactatt gtttgggcta tttggtattt
    15961 tctatgggga tatcctttaa attctttttc aagtataggt caatataatg aagaagtagc
    16021 aactcataat acaaaatttg aagaaaaatt taaaaattta tctcctgaag ataaaatagc
    16081 aatgggtcaa aatatctttt tagttcagtg ttcggcttgt catggaatta caggagatgg
    16141 tatcaatggt aaagctcaaa atttaaatat ttggggtagt gaagaaggta taatcaatgt
    16201 aattaaacat ggttcaaaag gtatgaattt tccaggtgga gaaatgcttg gtgctgctga
    16261 tttaggtgta gcagaagaag atatccctgc tattgctgct tatgtagcaa aagatctttc
    16321 agctattaag aaaactgcaa atgaaaattt agtagcaaaa ggtaaagaag cttatgcaac
    16381 ttgtgcagca tgccatggag aagatggaaa aggtcaagat ggaatgttcc cagatcttac
    16441 aaaatacggt tctacagctt ttgtagtaga tgttttacat agtggtaagg ctggttttat
    16501 aggaacaatg ccgagttttc caacacttaa tgatattcaa aaagaagctg ttggcgagta
    16561 tgtaatttct ctttcaaggg gtgaatgatg gaaaataata atagatgcgt gttttctctt
    16621 tcaggtgtta caggtatgtt aattgctacg gttttgttac ttgctatctt agtagtttta
    16681 actatttggg gtcttaaagc tcagcaagaa gtgatgcaaa agccatatag tcttaaagat
    16741 gtacaaagtg taaagatgtt tggttcaaaa gaacaagatc atagaagtat aaaggaagca
    16801 caatgagtaa ggctttggaa tatttaattg ttattggttt agttgttgct gctgcaatca
    16861 ccgcttggtc ggttttgacc gtaaatcatc ttcatatagg atgaaaaaaa tattacaaga
    16921 tggctttttt ttagctatct tcttctttgt tttattgcct tctagggttt ttgctcttga
    16981 tgctgtgctt tttaatgaaa atattttaag tcaaaaagta agtaacgaga ttaatcttat
    17041 aggaaaagag ctttaccaaa aaagtaatat ttttatcggc gttatggttg gtgataaaac
    17101 tgaaattgaa actttattaa ataaacaaaa agaacttcct caatcttata tattgcttct
    17161 tttgtcaaaa aattctcaca aagttgatat agtgggctca aaaggtgctt tagctttgat
    17221 tgataaagaa gctgtgctta gtccttatcc tggaacagga tctattttgc cgatattagc
    17281 tacaaataaa ggtgatattt ataatgctgc tatacttaat ggttatgcag atattgtaga
    17341 tcgtgtggca aaatccttgg gattacaatt agaacattct ataggtaatg caaatcgtga
    17401 tactatcaat attttaagaa tacttatcta tggatttatt tgctttgcat tgttatacta
    17461 tgcacaaaga agaataaaga ggaaaaaaaa tgttagaaac taaaaaaagt ttttggcctt
    17521 atggtatttt gctttcactt ttggctataa ttattgcttg tattgtaacg atttttatag
    17581 caagtcacca tcctgtgtat gaggatgatt tttattttga ctcttatcaa aatgttgaaa
    17641 ataattacaa tcaaatacaa aaacaacaag taaattttga taaatttttt aaagtaaatt
    17701 ttcaaaatga taaaatcact tttataggta aaagaaaaat tcctagttat gaagtggatc
    17761 aaaattccta tgttgcaaat tttaaaattt ctgcattaca aaatataaat tctaatgatt
    17821 taaaagttca agttcttctt acaagaccat tcactaaaaa ttttgatcaa aagttagaag
    17881 gacaagttaa aaatggaatt ttaagtatcg ctttacctaa attagataaa ggtagatggg
    17941 agcttaagct aaagttttat gcaaatcaag aaacagtggg tttttttagc tacgaattaa
    18001 atgctcaatg aaattaagaa tttttagctc ttcaaggcaa attagagaat attataatca
    18061 aaaaaaacag caaaatgctt tattagatag tgctattcat ataggtgaat ttttagataa
    18121 agtttgtttg agcaattttc ataaagcaag ttcttatgaa agtttgcttt taatgcaaga
    18181 agcttgtcta aaaagtaagg atttagaaaa aaaactagga atttcggtag aattttttgc
    18241 ttttttgaaa aataacgaat atcttttttc tttttttaaa gaactgagtt tggaaaaaaa
    18301 aagcatagaa gatcttaaaa acaatgatta ttatgccacc tataatgaac atttggaaat
    18361 tttagatgag gtatataaga attatcttgc tttgcttgaa aagaattctt tttatgatga
    18421 tctttcttta cctaaaaatt acactcttaa taaagatttt ttagatgagt atgaagctat
    18481 agtttatgat ttgcaaggtt ttttaagtaa atttgaagaa aatttattaa gtgaaatttc
    18541 tcagattaaa gaagtggttt taagttttaa aacgagtaaa tttaatcttg aatatctttt
    18601 aaaacttgat tttttaaaaa tatttgattt aaaaataaac actcattatg aaatcaatct
    18661 ttcaaaacaa gagatcttaa aagaagaaat ttttaaaaca aaaaattcaa aaatgaaact
    18721 caaatctttt gaattaaggg ctttgcaatg tgcttttgtt atggatgaaa tttcacattt
    18781 tgtacgcaaa ggtttaaagc ctgaaaatat tgcagttata actccagatg aaagtttttg
    18841 tgagttttta agactttttg ataaagacaa tatgcttaac tttgcaagtg gaattagtat
    18901 taaagagagt ttgttttatc aaaaatttca agcactttat gaaagtgcta gtagtgcttc
    18961 ttttgtctat aaaaatcaag aggattattt tgaagacacg cagatgattt ttgattatca
    19021 caatacgctt ttacattctt taaaacttga ttttatagag tttaaaaagt attttgatga
    19081 gaaatgtgat tttgaatatt ttgaaaaatt acttgttttg tttttagaaa atgaaaagca
    19141 agagcttatt tatttgatac gaaaagaact ttattttatt aaagatttat tgaaaaatca
    19201 gtctttaact cttaaagagt tgatccatct ttttttcatg caaatttcac aactttccct
    19261 tagtgatgta ggtggaggta aggttacagt aatgggactt ttagaaagtc gtgggctttg
    19321 ttttgatgga gtgattttgg ttgattttaa tgaagaattt attcctaaaa gaagtgttaa
    19381 tgagcttttt ttaaacaatg aagtgcgtaa aaaagcagga ttgattagct atgatagaag
    19441 agaaaattta caaagatttt attatgaaag cttgatgaag aatgctttag aagtaagtat
    19501 ttgctttgtg gaaaatgaag aaaaaagcaa atcacgtttt ttagatgaac ttgattttga
    19561 ctttttttat gaaactcata tccaccaaaa agcttatctt aatgctttaa aattagacta
    19621 tgaaggcata aaacctaatc taactcctat aaaagctcct attttaaagc ataatccttt
    19681 cgagtttccg ctttctttta gtcgttttaa tttattggaa aatcaaaaaa gaacttatta
    19741 ttatcgttat attttaaatt tagcagaacc tagggtttta agcgaggaaa gcaaagcgaa
    19801 aaatcaagga aattttatcc ataaaatgct tgaaatttat tataaaaatt atgcaaataa
    19861 tgattttgat ataaaagttt ttgcaaattt attggataaa gaatatcaaa aatacaatat
    19921 cagtgaactt gatcttgaag tatttaaatt aaaatttata caatttgcta aaaatgaaaa
    19981 agagcatttt tcaaaaggct tttatgtcgc acatacagag cttgagttaa acaatatttt
    20041 aaagctcgga acagatagta taaaacttaa gggtactata gatcgtatcg atagttcaaa
    20101 agaaggtaat ttgattattg attataaaag tggaaaagtg ccaagtaatt cttatcaact
    20161 tgctttttac caagctttat atgatgaaaa tgcaagcgtg ggtttttatg atttaaatag
    20221 tatgcaaata ttgcatcaaa aagccaaaag tttagatgag ctaagagaaa gacttaaaga
    20281 tttagttctt atgagtaagg aagaaataga gtttgaaaat gaacaagatg agtattgtcc
    20341 ttataaactc atttataaaa aggaattaaa atgagtcaat ttgagccttt tttggcatta
    20401 gaagcgagtg caggaagcgg aaaaaccttt gccctgagtg tgcgttttgt agcacttatt
    20461 ttaaaaggag ctaggattaa tgaaatttta gctttgactt ttaccaaaaa agctgctaat
    20521 gaaatgcaaa aaagaattat tgagactttt ttaaacttag aaaaagaaaa taaaaccagt
    20581 gaatgcaatg aactttgcaa gcttttaggt aaagataaag aagagcttat ttctttaaga
    20641 gatgctaaaa aagaagaatt tttaagaaca gagttaaaaa tcagtacttt tgatgctttt
    20701 ttcggaaaaa ttttgcgtgt ttttgcttta aatttgggct taagtagtga ttttacaatg
    20761 agtgaagaga ggcttgatgt aagagagatt tttttaaaac ttcttaaaaa agatgaatta
    20821 aaagatttgg cttattatat taatttagtt gatgagaaag aaaatttttt taacgagctt
    20881 gaaaaatttt atgagaatgc ttattttcaa aatcgtccta aaattctaaa tccaactaaa
    20941 gcttatatca ataaagctta tagtgagtta agaagttatt gtttgggtct tactcatgta
    21001 aaaaattata aaaatttgtg tgacaatttc aaaagtgaag ttttagattt atccgtgttt
    21061 atgcaatcaa gttttatgac aaaatttgaa agtacaaaat atttgcaaga tttagaaagt
    21121 actaacttgc attttagtgc aaaaagaatg gagcttataa atgctttaaa tacttatgcc
    21181 atagagcttg aaaattataa aattgctaat ttaatgaatc ttttaaatca ttatagtgaa
    21241 gctaaaaata tatttcataa agataaaaat accttaaatt tccaagatgc gagtaaaaaa
    21301 gtttatgagc taataactag tgaatttaag gatatgattt attttcgttt agatggtttt
    21361 atttcgcatt tgcttattga tgaatttcaa gatacaagcg tgatccaata tcaaatttta
    21421 cgccctttga tcgctgagct tgtttcagga gaaggggtta agaaaaatcg cacttttttt
    21481 tatgtaggag ataaaaaaca aagtatttat cgctttcgta aaggaaaaaa agaattattt
    21541 gatttgttaa aacaagaatt tagtcaaatt aaaagtgata atttaaatac taattatcgt
    21601 tctaaagagc ttttggttga ttttgttaat gaaactttta aagaaaaaat caaagattat
    21661 aaagaacaat ttgccttaga aagtaaaaaa ggcggttttg tgcgtattgt ggagtctaag
    21721 gaacaaaagg ttaaaaacca agcccaagaa attaaggaaa agactttaga aactttattt
    21781 gagcaaatta attttttaag atctaaaaat atttcttatg atgatatttg tattttgtgt
    21841 tggaaaaata gcgatgcaga tatggttttg gattttttaa gagagcaaaa tattcctgca
    21901 tttactcaaa gtaatgtttt gcttgaaaat aaagcaagtg taagacttgt tttagaatat
    21961 gctaaatatt gtatttttgg tgatgagttt tacttggtat ttttaaagga acttttaggt
    22021 tttgagccga gaaaaattac ccttgatttt tcaaaaaatg ctatggaaaa tgtacttttt
    22081 ttaataaaag aattaaaact tgatttaaat gatatcgctt taatacaatt tatcgaatat
    22141 gctaaaacta aggagaattt tttaaagctt ttatttgagc cttgtgcttt gaaaatagta
    22201 agcgaacaaa atatgggaat tagtattatg agtgtgcata aatctaaggg tttggaattt
    22261 gatcatgtga ttttacttga tagtttatct aaaaacaatt caaacaatga agatatcatg
    22321 cttgaatatg atatcaatca aggttggcaa ctccatatta aagataaaat tcgagagctt
    22381 actaaagagc ctatttatac tctttttaaa gaaaatatta caagagcaaa ttatgaagat
    22441 gatattaata aactttatgt ggcttttaca agagctaagg aaagtttgat catcataaaa
    22501 agaaatgaag aaagtgtaaa tggaaattat ccaagttatt ttaagggggg atttttaaat
    22561 atacattctc aagagagagg ttttttagaa agcaaagaac aaattttaag cgttaaaaaa
    22621 gaaagcattc aaactttgca aaaatttgaa aaaattacct tgcaagaaat tcaaagcgaa
    22681 gaaaggcttg atagtaaaga actatatttt ggaaatgctt ttcacttttt tatgcaaaat
    22741 ttaaaacttc ctaagggtga aaattttcaa atacttactc aaagatgcaa gagtaaattt
    22801 agacattttt tagatgagag tgattttgaa aagcttttta aaagaattga aattttactt
    22861 aaaaatattc aatttcaaaa tttgattggt gatggaaagc ttttaaagga acaagctttg
    22921 agttttaatg gagaaattaa acaattagac ttgcttgctt taaaagatga agaagctttt
    22981 ataattgatt ataaaacagg tcttgctatg caagataaac ataaagagca ggtaggaact
    23041 tataagatcg ccattagtga aattttgcaa aaagataaag tgcgtgcttt tatagtttat
    23101 tgtttggaaa atgaaattca aattttggaa atataaactt tatttttact taaattaagt
    23161 aaaaattaat attatttttt atacaatcac attttaaatt tttggcaaag gtaaaaatta
    23221 tgacaaagat aacaaagcca aacgaagtaa aacgagaatg gattgtttta gacgcagaag
    23281 gcaaacgctt tggtcgtctt ttaactgaag tagcaacaat tttgagaggt aaaaacaaac
    23341 cttgctttac tccaaatgtt gattgtggtg attatgtaat tatcatcaat gcttcaaaag
    23401 ctgtatttac aggtgctaat aaagcagaag ataagcttta tcatagacat tcaggatatt
    23461 ttggaagtgt aaaaagcgaa aaatttggtg atttacttga aaaaaatcct gcaaaattat
    23521 ataaattagc agttagaggt atgcttccta aaacaaattt gggcagagct atgcttaaaa
    23581 aattaaaaat ctatgcgggt agtgagcacc cacacactgc acaaattgct aaagaaggaa
    23641 aataatcatg gcaacaacat acgcaacagg taagagaaaa actgctatcg caaaggtatg
    23701 ggtaaaacca ggtagtggta aaattagtgt taatggtgtt gatttaaaca cttggcttgg
    23761 tggacacgag gcgattaagc ttaaagtggt tcaaccttta cttgtgacta aacaagaaac
    23821 ttcaatggat attaaagcaa ctactttagg cgggggctat agtgctcaag ctgaagcttt
    23881 aagacatgga atttcaagag ctttagcagc tatggatgct gattttagag ccttattaaa
    23941 acctaaagga cttcttacta gagatagtag aactgttgag cgtaaaaaat atggacgccg
    24001 caaagcaaga agaagcccac aattctctaa acgttaatat ttttggtggg attttcccac
    24061 ctttctacaa ttttttataa aactcatcct tttttctatc atttatgtta taattgcaaa
    24121 atttaaattt ttattttata acacaatgaa aggttttttc tatgaaaaaa atattcttat
    24181 gtttaggttt ggcaagtgtt ttatttggtg ctgataacaa tgtaaaattt gaaatcactc
    24241 caactttaaa ctataattac tttgaaggta atttagatat ggataatcgt tatgcaccag
    24301 ggattagact tggttatcat tttgacgatt tttggcttga tcaattagaa tttgggttag
    24361 agcattattc tgatgttaaa tatacaaata caaataaaac tacagatatt acaagaactt
    24421 atttgagtgc tattaaaggt attgatgtag gtgagaaatt ttatttctat ggtttagcag
    24481 gtggaggata tgaggatttt tcaaatgctg cttatgataa taaaagcggt ggatttggac
    24541 attatggcgc gggtgtaaaa ttccgtctta gtgattcttt ggctttaaga cttgaaacta
    24601 gagatcaaat taattttaat catgcaaacc ataattgggt ttcaacttta ggtattagtt
    24661 ttggttttgg tggcaaaaag gaaaaagctg tagaagaagt tgctgatact cgtccagctc
    24721 cacaagcaaa atgtcctgtt gaaccaagag aaggtgcttt gttagatgaa aatggttgtg
    24781 aaaaaactat ttctttggaa ggtcattttg gttttgataa aactactata aatccaactt
    24841 ttcaagaaaa aatcaaagaa attgcaaaag ttttagatga aaatgaaaga tatgatacta
    24901 ttcttgaagg acatacagat aatatcggtt caagagctta taatcaaaag ctttctgaaa
    24961 gacgtgctaa aagtgttgct aatgaacttg aaaaatatgg tgtagaaaaa agtcgcatca
    25021 aaacagtagg ttatggtcaa gataatcctc gctcaagcaa tgacactaaa gaaggtagag
    25081 cggataatag aagagtggat gctaaattta ttttaagata atgaataaaa ctattttatt
    25141 tgatttagat ggcactttaa ttgattctac tgatgctatt ttaaattctt tccaaggagc
    25201 ttttaaagcc cttggattaa cttctaaaaa taatgaagaa atcaaaaatc tcataggtta
    25261 tcctttagag caaatgttta gaatgcttta tccagataaa gtaaatttaa gtaaagaatt
    25321 tgtattagct tattgtgaaa tttatgcaca aatttattta gaacaaacca ctcttttgcc
    25381 taaagcaaaa gaagcattag aacttggaag cgaaattgca gatcttggta tagttacaac
    25441 aaaaggaggt aaatttactc cgattctgct tgattatttg ggagttaaaa aattctttaa
    25501 aactttaatt actcttgaag atgtcacaaa tccaaagcca agttccgaac ctataatttt
    25561 agctttaaaa agactcaata aaactcaaga aaatgcctat atgataggcg atacaatatt
    25621 agatattcaa gctgcaattt ctgctaatat cactccttta gccttaactt gtggctatgg
    25681 caatgaaaat gaattaaaaa cccattctat ggtattttta aacgcatatg aggctgttaa
    25741 ttatatagct agattaaact aatttcaagt tttcgttaaa cgccttttaa gagaatttat
    25801 agtaaattgg tagctaaaaa attataaaaa ttatcaatat aaaggaaggt ctcaatgggt
    25861 aaaattatga aaactatgga cggaaatgag gctgctgcat acgctgcgta tgcttttact
    25921 gaagttgctg gaatttatcc tattacacct agttctccta tggctgatta caccgatatg
    25981 tgggcagctg caggtaaaaa aaatcttttt ggagttcctg taaaaatcgt agaaatgcaa
    26041 agtgaagcag gtgctgcagg tagtgtgcat ggatctttac aggctggagc tttaactaca
    26101 acttatacag cttctcaagg attactcctt aaaattccaa atatgtataa aatagcaggt
    26161 caattgctcc cctgtgtaat ccatgtagca gcgcgttctt tggctgctca agctttgtct
    26221 atctttggcg atcatcaaga tatttatgcg gcaagacaaa ttggttttgc tatgctttgt
    26281 tcgcattctg tgcaagaaac catggactta gctggtgtag cacatttagc tacaattaag
    26341 ggaagagtgc catttttgca tttttttgat ggttttagaa caagccatga aattcaaaaa
    26401 gttgaagtga tggattatgc gcattttgat agattattag atagagaagc tttgcttgaa
    26461 tttagaaata atgctttaaa tccagaaaat ccaaaaacac gcggaacagc acaaaatgat
    26521 gatatttatt ttcaaactag agaagtaagc aatcgttttt atgatgcttt gcctgatgtt
    26581 gttaatgaat atatgcaaga aatttcaaaa attacaggta gagaatacaa accatttact
    26641 tattatggac acaaagagcc agagcgtatg attgttgcta tgggttctgt aactcaagca
    26701 cttgaagagg tagtggacta tcttaatgct aaaggtgaaa aggtagggat tttaaaagtt
    26761 tatctttatc gtccatttag tttaaaatat ttctttgatg ttatgccaaa atcagtgaaa
    26821 aaaatcgcgg ttttagatag aaccaaagaa ccaggaagtc ttggggagcc gctttatatt
    26881 gatgtaaaat cagctttcta tggaagagaa aatgctcctg ttatagtggg tggaagatac
    26941 ggactttctt caaaggatgt tgatcctgct caaatgatag cagtatttga aaatcttaaa
    27001 cttgataatc caaaagatgg ctttactgta ggtatagttg atgatgtaac tcacacttca
    27061 ctgagtactg gagagaaaat ttcacttgga gatgaaagta cgatcgaatg tttattttac
    27121 ggacttggtg ctgatggaac tgtgggtgca aataaaaact cgattaaaat tatcggggat
    27181 aaaacggatt tttacgctca agcttatttt gcttatgatt ctaaaaaatc agggggttat
    27241 acaagaagcc atttaagatt ttctaaaaaa cctatccgtt caacttatct tgtttcaact
    27301 ccgcatttta tcgcttgttc ggtagcggct tatttggaaa tttatgatgt tttagcagga
    27361 attcgtaaag gcggaacttt ccttttaaac agtatttgga atgccgaaga aaccataaga
    27421 caacttccag atgcagtaaa gaaaacttta gctgaaaaag aagtaaattt ttatatcatc
    27481 aatgcaacca aactagctcg tgatataggt ttgggaaatc gtacaaatac cattatgcaa
    27541 tcagcctttt tcaaacttgc aaaaatcatt ccttatgaag acgcacaaaa atacatgaaa
    27601 gagcttgcgt ataaatctta tagtaaaaaa ggcgatgcta ttgtagaaat gaattacaag
    27661 gctattgatg tgggtgctga tggacttgta aaagttgaag tggatccaaa ttggaaaaat
    27721 ttagagctta aagaaaaaga acaaaccaat gcctataaag gtactgaatt tgttgaaaaa
    27781 atcgtaaaac ctatgaatgc ggctaagggt gatgatttac ctgtttcagc ctttttaggt
    27841 tatgaagatg gaagttttga acacggcaca accgaatacg aaaaacgcgg tgttggggtt
    27901 atggtaccaa gatggataga ggcaaattgt attcaatgta atcaatgtgc ttcagtttgt
    27961 ccgcatgctg ttatcaggcc atttttgatt aatgatgaag aaatggcaaa tgcacctcgc
    28021 ggtgtaaaag atcatgcttt agaagctaaa ggaaccaaag gagaaaaatt aagctttaaa
    28081 attcaagttt ctccacttga ttgtacaggc tgtgagcttt gtgttcatga gtgtcctact
    28141 aaagaaaaat ctttggttat ggtaccactt caagaagaga tggattttgg tgagcaagaa
    28201 aatgcggatt atttatttaa agaaatcaca tacaaagatg atattttaaa taaagaaact
    28261 acaaaaggag cacaatttgc ccaaccttta tttgaattcc atggagcttg tcctggatgt
    28321 ggagaaactc cttatattac tttaattaca agattgttcg gtgaaagaat gattgtggct
    28381 aatgcgacag gttgtagttc tatttatggg ggttcagctc catcaactcc ttatagaaaa
    28441 agtgtgaaaa atggacacgg tcctgcttgg ggaaattcac tttttgaaga caatgctgag
    28501 tttggtttgg gtatgaaaat tgcaactgaa aatacaaggc accgcattga acatatcatg
    28561 aatgaaagta tgcaagaagt tccaaatgct ttatcagctc tttttaaaga ttggattgca
    28621 aataaagaca atggtgctat gtctgtggaa attaaagata aaatgatccc tattttagag
    28681 caaaataaaa atattaaagc cgtacaagat atattagagc ttaaacagta tttaagtaaa
    28741 aaatctcact ggatttttgg tggtgatggt tgggcttatg atataggcta tggcggactt
    28801 gatcatgttt tagcaagtgg agaaaatgta aatattttag tgcttgatac agaagtttat
    28861 tctaatacag gcggtcaaag ttcaaaatct tctagaacag gagctgtagc acagtttgca
    28921 gcagcaggca aacctataca gaaaaaagat ctaggtcaaa ttgctatgac ttatggttat
    28981 atttttgtag cacaagtaaa ttcaacggca aattatactc atcttatcaa agctatcacc
    29041 gcagctgagg cctatgatgg accatctttg gtgatttgtt attctccttg tatagctcat
    29101 ggtattaaag gtgggctggg ttactcagga gagcaaggtg agcttgctac aaaatgtggt
    29161 tattggccac tttatacctt taatcctcgt ttagaagagc aaggaaaaaa tcctttaact
    29221 ctaacaggaa aagaacctga ttgggattta tatgagcaat ttttgatgaa tgaagtgcgt
    29281 tataattcac ttaaaaaagc aaatcctgaa cacgctgctg agctttttga acgcaataaa
    29341 aaagacgctc aacgtcgcta tagacagctt aagcgtatcg ctatggctga ttatagcaat
    29401 gaggttgaaa gctgataaaa tatattttta gtgctacatt gtgttttagc actttgtttg
    29461 cacaagataa ttttgaagag tattttaaac ttatagataa agaaaatcgt ataaatttta
    29521 atactcttca aaacccattt gtgaatccta cttttgaaaa attaagacat attaaaatta
    29581 ctgcaattat gcttgataaa gtaaaaattt atgatcgatg gtataaaaaa ggtgatatga
    29641 ttgatgatgc tataatatat gaaataaata ctaaagagat taaattccaa tatgataatt
    29701 tagaaattgc aatccaaata aataaaaatg ataagattaa tattaattaa cattcttttt
    29761 tgccattatc tttatgcttt agattgtcaa aagcgtcttt ttgatatcag tattaatgaa
    29821 aaattaagca tacaagaaag tcttgatgag cttgcaaaat attgttcttt tagtattatt
    29881 gttaaagata aaattgccaa agaaaaatta gaaatattgc aaaactctgt caatattcat
    29941 caaatgagtt tagacgaaat ttttaatttt tttatcaaag agcatgatct tagctatgat
    30001 tttgatggta aaattttaag aatttcaggc attaatacga agatttttaa gataagttat
    30061 atcacttcta tcagagaagg acaaagcata actaaagcgt ctgtagacgc taaaccaagg
    30121 caaagtgaat atagcggtag ttttgatgac gcagaagaca atatgattaa aagtatggaa
    30181 aaatttgatt tttggcaaaa tatagaaaaa gagattattg tattattaaa aaattctcat
    30241 gaagattatg aggctaaaac tcccattata aatcccaatg caggtcttat tatagtaact
    30301 ggaacaaatt ctcagttaaa aagtgtgaaa aattatttgc aaaaactaga aaatcgtctt
    30361 aaaaaacaag ttattatcga tgttagcata cttgctgtga gtttaaatga aagccattct
    30421 agtggaatta attggcaaaa ttttaatata ggtttaaatt cacaagtaaa taatgaaaat
    30481 tcttttattc agtttcaaaa tgggcaaggt tttgttaaga atttgggttt aagggcgaat
    30541 ttaaattttg attctattat taactttctt tctcaaaatg gaaaaactag cgtgctttct
    30601 aatccaaagc ttatggcttt aaataaccaa caagccatta tttctgtagg cgatactata
    30661 aattatcaag ttaaagaaag ttctaaaggc actgaaaatg ggactactgt tagtgaaagt
    30721 tataacaatt attctatttt tgtaggcatt ttactcaata tcttgcctga aatttctgat
    30781 gatggaaaaa taatgctcag gattaatcca agcttaagtg attttaagta tccagaagat
    30841 aataaacgac aaaaagaacc aagaactatt gctcctgata ccatacaaaa aaagctttct
    30901 agtgttgtgc aagtagagaa taatcaaact ttaattttag gtggattgat ttctcacgat
    30961 aaatctaatg agaaaaattc tatcaatttt ctatcaaaaa ttccaatcct aggttctttg
    31021 tttaaaggag aagttttaaa ttctaaagca accgaaattg tttttattat cactccaagt
    31081 atagtagata gtgtaaatgc tccaagtctt aaagatctag gatttaagca ttatgagtaa
    31141 aattattcca tttagagaag aaatttttca tcaaatcaat caaattttag aaagccaaaa
    31201 agcttttatt tttttatggg gaaaaagtgg tagtggtaaa agtgtattgt tgcaaagatt
    31261 agcaaaaaaa tataatgttg attttattaa tgaaaatttt aaagatcaga gtttcttaaa
    31321 agaaaaaatt gagtttttga tttcacaagg tcagagttta atcattcttg atgaagtggg
    31381 aatgtatgat tatgcaatgc tagaaagcat caggatttat agtgattcta taagttttgt
    31441 tttaagttct cataaaaagt taaatatact taaaaaagag cattttaaaa gtcgtttaag
    31501 tgcttgtttt aaattgaaaa atattagtct tttagaactt gatgattata ttaaattgaa
    31561 atttggaatg aatttttcaa ataaatgtct taagttttta caaaaaattt ctcaaggaaa
    31621 tttaagatat attgataaaa ctttaaaaag tttttatgag ataaatagtt tttttgataa
    31681 aaacaaaagt caagagtata ttttaaagct tagtgcttta gagaatggct tattaaggta
    31741 agatatgcaa gaaagaa
//
LOCUS       DBBXPZ010000008        31050 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.008, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000008 DBBXPZ010000000
VERSION     DBBXPZ010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 31050)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31050)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31050
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.008"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..1248
                     /locus_tag="ACJFD7_000278"
     CDS             <1..1248
                     /locus_tag="ACJFD7_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HGG0859127.1"
                     /translation="INPYFALVLFIYTFFIHYFALLIFVRRKRYIFATCMAFIILNLC
                     FFKYFPSIKGSVDEILNFFGLEFLNIDLVLPIGISFYTFTSITYLVEVYQKRRLESFL
                     NLATFLSFFPTLLSGPIMRSSFFFEQAYQKREFKHANLIIILLVFGIVKKVLIANYLG
                     IYAKSILDFPQSYNFIQLLSAIYAYAIQIYCDFSGYVDLVCAFALMLGFTLPSNFNMP
                     YLAKNLKDFWARWHISLSTFIRDYIYIPLGGNRKGMPRTIVNILIAFILSGIWHGNTL
                     AFIVWGLLHGIGIVFIHLLALSKFSLQKIPALGRFLTFQFVCFTWIFFYYSKNLEDAI
                     EYFKACYYNFFQIPSYNDIYMLVAFGVLFMIYPLFINFKEYCIKILNLTPFLLKPFII
                     AFILLLVFAFMPDGIPDFIYSSF"
     gene            1249..2259
                     /locus_tag="ACJFD7_000279"
     CDS             1249..2259
                     /locus_tag="ACJFD7_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HGG0859128.1"
                     /translation="MSVVRFFFILIIVLGLVVVVMNQSISSYIEQKYHFAFYPHNDLL
                     KEANGFKIKLEQIRAILSNEPLPQTNEETTNQENKSIDENLSKIDKVLNTLENDENTS
                     HKETNPTLIRDANISFIDNTKLELQNGDEFLFIGDSLMQGVAIALNRDLRNLNLKVTD
                     LSKQNTGLSYKSYFDWSKATNEAFIKNSNIKYLVVLLGANDPWDIKKGGNYHRFGSPS
                     WIDIYTSRVDEIIKIAKKHKAKVFWFEIPPVKKEDLNKKIQVLNKIYSDEILKNKEIF
                     INTKLFFSVNDEYSAYIKDENNRSIKVRTDDGVHFTPSGAREMSKLLLEHIKLKEENA
                     SK"
     gene            2246..3424
                     /locus_tag="ACJFD7_000280"
     CDS             2246..3424
                     /locus_tag="ACJFD7_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HGG0859129.1"
                     /translation="MLVNKFKIILLFFIIFTSSYAQNLNTNDTIDSILNQNKNHSALT
                     SYVLKKDLKNLEKKLEKNQNIGIRIYGDSHMAADFFPRVIRGYLIRSNSIGFAYPLQP
                     KYQQNLNLVYSYKNFEILNSRNPANAGHNFPLGGIIAKAKIKGAKINLDTTLDKKKFK
                     IGFLFKAKQNTNAFSIKDAKNQSYELRTTQINKWSYKELELDFPLQISALQKDAELGG
                     YFITNKDNNVFLDTIAINGAKSDLWLSWNQTVVKKELGLLHNDLIILAYGSNDALFKG
                     FEKQKFKNNLKKWISILKTYNKNAVIMLISPPTVVQKQGKNYKLAPDFFTIRKALYEV
                     AKEEKTLIFDMHQFMQDSGGKNKWIEQKLSLNDVHLTIKGYELMAKKLLEDLKNIIDY
                     "
     gene            complement(3427..4797)
                     /locus_tag="ACJFD7_000281"
     CDS             complement(3427..4797)
                     /locus_tag="ACJFD7_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HGG0859130.1"
                     /translation="MKIILSIFLAFFLSACGVKLSLPKEVDLTQEQMKDLNLTYDWYR
                     SYDNAKLNEFLNFVLLNNSDINIARKTLLSALARADLIDYDLYPTLSGNLGFGGDKDL
                     NSGKQSKNFNNSLNLSYELDIYGKLRDSASASEFSAKASAYDLENLKISMINTALNDV
                     FELAYFNDVDKLLRAYLSNLEQMKELYNYKYKLGKIEELDLLNIEQSLLRAKQNLLGN
                     DQNRNLLIKNLQDLLARQEGFAYIEYFKTLSLNDFKTLSPDFNIPLKALAYRADVRSK
                     LNSLKSAFKDYSSMQKSILPSISLGGALSGSDKKIDDSFKFEILSGNVKISLPFLDYG
                     RVKQNIKISQFTYEQLLISYEQALQSAMNEFALNYKDYQSDTLLLQNLQNINIKQELI
                     TKAYYEKYILGKSELKDYLDANNTLNSTQQEFLRARFNLLKTINSYYQITALSFNDEN
                     LEFPKY"
     gene            complement(4799..6724)
                     /locus_tag="ACJFD7_000282"
     CDS             complement(4799..6724)
                     /locus_tag="ACJFD7_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0859131.1"
                     /translation="MIFLKNICKNIGENAILKNVSLSIEKGEFVAIIGQSGSGKTSLL
                     NIIGTLDTPSSGTYVFDEYEVTKLNNDEKARLRREKIGFIFQRYNLLSLLSAKENVSL
                     PAVYAGKNLQERSQNAKKLLNDLELAHKLDSKPNELSGGQQQRVSIARALINGGELIL
                     ADEPTGALDSKSGIMVLEILQKLNEQGHTIVLVTHDPKIAAQAKRVIEIKDGEILSDT
                     KKEKAQEKLILKTMPKEKKTLTLLKNQAFECFKIAYSSILAHKLRSILTMLGIIIGIA
                     SVVCVVALGLGSQAKVLESIARLGTNTIEIRPGKGFGDLRSGKTRLNFSDLETLRSLE
                     YLEAVDAHSNTSGVATYTNISLSARAEGVGVNNFAIEGLRIDAGRILNNDDVKNSTNV
                     AVLDFNAKKNLFPDEKSENILGRVVLFNSQPFKIIGVLQKDTDKPIEDNVVRLYIPYT
                     TLMNKLTGDRNLREIIVKVKDDVSSTLAENAIIRILEIKRGQKDFFTFNSDTFKQAIT
                     ANKRTTTILTACVAVIALIVGGIGVMNIMLVSVSERTREIGIRMAIGARREDIMMQFL
                     IEAVMICTIGAILGVILSIFVIFAFNTLSTDFPMILNAYSVLLGLLSSMFIGVVFGFF
                     PARNAANLNPISALSKE"
     gene            complement(6724..7896)
                     /locus_tag="ACJFD7_000283"
     CDS             complement(6724..7896)
                     /locus_tag="ACJFD7_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0042802 - identical protein binding
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HGG0859132.1"
                     /translation="MKKKIVLIILIAILGSVGAYFIFFNNDEKISYLTQKIQKKDISQ
                     TIEAVGKVYAKDQVDVGAQVSGQIIKLYVDVGTHVKQGDLIAQIDKDKQQNDLDITKA
                     QLESAKANLESKKVALEIANKQYQREQKLYAAKASSLENLETQKNNYYTLKANVAELN
                     AQVVQLEITLKNAQKDLGYTTITAPMDGVVINVAVDEGQTVNANQNTPTIVRIANLDE
                     MEVRMEIAEADVSKIKVGTELDFSLLNDPQKTYHAKIASIDPADTEVSDSSTSSSSSS
                     SSSSSSSSSNAIYYYAKFYVANKDDFLRIGMSIQNEIVVASAKAVLAVPTYAIKSDPK
                     GYYVEILENQKAVKKYVKLGIKDSINTQILEGVNENEELIVSSSADGLATKMKLRF"
     gene            complement(7975..9165)
                     /locus_tag="ACJFD7_000284"
     CDS             complement(7975..9165)
                     /locus_tag="ACJFD7_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallopeptidase"
                     /protein_id="HGG0859133.1"
                     /translation="MQKLVENLALKYYDKVVDLRHQIHMHPELEFEEENTAHLVCKIL
                     DEFGIKYQKNIAKTGILAIIEGKKKSRKKPKCVLLRADMDALPVQEKTNLSYASKIDG
                     KMHACGHDGHTAGLLGAALILNELKDEFCGTIKFMFQPAEEGSGGAKPMIESGVLENP
                     YVNAVFGCHLWGPLLENTAQIVSGEMMAGTDIFDLEFIGRGGHGAHPHTCIDPIIMAT
                     QFVNNMQSVVSRRLAPYEAGVITVGQICAGTTYNVIPANAYLKGTVRFLNDKTQDILK
                     SSLEEVAAATAKSNGGDYKLKYTKEFPPLINDEKAVLIARKAFAKVLGEENIIVSSKP
                     DMGAEDFAFLTRERMGAYVFVGISKDLNHPALHHSSTFCWDDENLKVLMQGDVMMALE
                     FLNL"
     gene            complement(9174..10055)
                     /gene="ppk2"
                     /locus_tag="ACJFD7_000285"
     CDS             complement(9174..10055)
                     /gene="ppk2"
                     /locus_tag="ACJFD7_000285"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006793 - phosphorus metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
                     /protein_id="HGG0859134.1"
                     /translation="MQENNSPKAQATVKKNEIYVSVKRKKSTIEYEKDLKNLQIELLK
                     FQNHVKAKGLKVLILIEGRDAAGKGGAIKRLIEHLNPRGCRVVALEKPSDVEKTQWYF
                     QRYIAHLPSAGEIVIFDRSWYNRAGVEPVMGFCTPQQHKDFLREVPLFENMISSSDII
                     FFKFYFSVSKDEQKKRFEKRRSDPLKQYKLSPVDQKSQELWDKYTLAKYSMLLASNTP
                     TCPWTIISSDDKKKARLNLLRFILSKVEYPNKKTGDFSKIDAKLVRSGEEEIRKMEAN
                     LEKLDSKKADEKIKDLD"
     gene            10150..11853
                     /gene="dsbD"
                     /locus_tag="ACJFD7_000286"
     CDS             10150..11853
                     /gene="dsbD"
                     /locus_tag="ACJFD7_000286"
                     /EC_number="1.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047134 - protein-disulfide reductase
                     (NAD(P)H) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HGG0859135.1"
                     /translation="MRIFGIILLSFCLCFASILSLNEAFNVKSNSYNNSISIDIELGK
                     DIYLYSNKLKLYINEKDISSLINLPQSSTRGNENVYYQKLNLALPNLLLERFAKNTTN
                     LIKLEFQGCSEQGLCYNPQTWYFDLISKKDAFEISKPYKTQKTDKKTKIESEESTIAN
                     FLATDNFFWILLSFFGYGLLLSLTPCILPMIPILSSLIIAKSNAKFSKKYSFFLSFIY
                     VFFMSLAYAIAGVIASFLGASIQGILQKPIILILFALIFIAFAFAMFGAFRFELPLKF
                     QTFIHKKSEKGKGVVGIAIMGFLSALIVGPCVAAPLAGALIYIANTGNALLGGSALFI
                     MSFGMGIPLLFIGLGLGFIKPGFWMEKVKIFFGFVMLAMAIWILSRIIEENYILIAYG
                     ILGVFFSVFMGIFEKSFTIISKIKKSILILILAYSLSIFLGGLFGAKNFLNPLNFNTI
                     SASKPALSYDYINNFEQLKQEIQTNTKPIMLDFTASWCENCKLLDELTFSDERIIQKM
                     QNYKLIKVDVSENNNEQIKTMKEFNVFGPPVLIFFENGKEKLKITGFISADDLLKKLE
                     P"
     gene            11850..12518
                     /locus_tag="ACJFD7_000287"
     CDS             11850..12518
                     /locus_tag="ACJFD7_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HGG0859136.1"
                     /translation="MKIQSLQIGKIKNYKNFQSAFIKDTYLEEIQIDFLGILDDQIAD
                     KIHHGGYHKAIFANSCQNYPIWERFLNKKLNFGSMGENLSIDGLCEQNVCIGDIHQFS
                     NAILQVSEPRKPCVKISKIHNNSNFTHEIFKTGLSGWYYKVLQVGQIRKHGNIKILEK
                     NSTSLSVFELNRLFYSPYQILKQNPNLLDKLEKLNSLISQNWHETIHKRLKNTYDISY
                     MDSL"
     gene            12569..13912
                     /locus_tag="ACJFD7_000288"
     CDS             12569..13912
                     /locus_tag="ACJFD7_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HGG0859137.1"
                     /translation="MQRQTWSSTLTYILTVAGATIGFGATWRFPYLVGENGGGAYVLV
                     FCIAMIIIGIPVILVENVIGRKAMTNSVDAFKQKWQSIGYMGLLGSFGIMAYYMVLGG
                     WVLVYIWELTLGNFSLANVVSKEFTHQFFNDKIAFNPLGVGIFTTVFVIINYIILKRG
                     IIDGIEKSVKFLMPLLFICLIIVVGRNLTLDGAMAGVKFYLEPNFSKILSPKLLIDVL
                     GQVFFALSLGFGVMITLSSHLNKNENMAKTAIYTGVLNTIIAVLAGFMIFPALFSAGL
                     APDSGPSLVFETLPIAFSHIHFGTIVCILFFVLLLIAALTTSLPIYQVIISVLEEKFK
                     YSKNLSINLTLGFIFILGNLPCILTYGPWRDIVIIKGKNIFDSFDFISGNILFVLTAF
                     FCCIYVGWILGKQESLKELSNNNTLKSSWFGIWFYYVKYIVPLIILIIFIYGILN"
     gene            complement(13904..14779)
                     /locus_tag="ACJFD7_000289"
     CDS             complement(13904..14779)
                     /locus_tag="ACJFD7_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate
                     deaminase/D-cysteine desulfhydrase"
                     /protein_id="HGG0859138.1"
                     /translation="MNFIKTISPIQKINFNGFEFYIKRDDLLGEINGNKARKLAFYIH
                     QRYPKNQSFVSYGGSQSNALAALSIFAKQRSYKLVFACEKISTFLKNNPCGNYALALE
                     NGVDFVENIHSLSLKQFALSLCKKDDVFIEQGIANLEAQYGYMELAQEIQMQSQSLKL
                     DFDIFLPSGTGTSAAFLAKYSKFKVFTCACVGDIKYLKKQILTLDPSYDFSNLEFLTS
                     DKKYHFAKPYKEFYELYMDLKLKCNIEFDLLYDILGLSIALKQEWKKPLLYIHQGGIL
                     GNSTMLERYKFKKSV"
     gene            complement(14766..15719)
                     /locus_tag="ACJFD7_000290"
     CDS             complement(14766..15719)
                     /locus_tag="ACJFD7_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HGG0859139.1"
                     /translation="MKNESKEDSNFWIAYADLMAGLLFVFILLIGAIVVKYVLTQSDL
                     KEIKDNLNKQEARLEESKEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN
                     YKQLSKDLNSTLDNKDKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGLIRENLS
                     KELQSKLDNNITIDEKTGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDP
                     KIFSNIENIIIEGHTDSDGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGRS
                     FSDPVFVNGVEDKDKSRRIEIKFSIKNDNALKDVEKFFEFH"
     gene            complement(15716..17158)
                     /locus_tag="ACJFD7_000291"
     CDS             complement(15716..17158)
                     /locus_tag="ACJFD7_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HGG0859140.1"
                     /translation="MDIKSDEISELVLPEGKDARGSLVYFKIIFIPAFLYILVLLGYF
                     NVIDFKVELHTVIMTGVIFFTALIFARHSAEYAYSIFEQQKDEFKQALKRHIMRHFLA
                     IGKDTKSNANFDDFAYTYIKGARNENFASIGSAIFPMMGILGTFISIAFSMPNFSSSD
                     TAALEQEIADLLSGVGTAFYVSIYGIFLALWWMFFEKYGKSKIDRLLNRQKNATSGFF
                     WTKEELDQRYLTESLQHFEKIGAIFKQVSNDDFFAELDHAIDRKFGIFQDMLNIEEKA
                     IRLSGEHIKQTMGELSKAQRDQRDLGKLYSEMLNGIGLLNQNLKEINTRMSEQYNRLL
                     DISSDKIHHLDKTLSAFDEKVERFGKNFELYEKAMLESQEKVFEGFKASLFEGMHKFK
                     EVYEEEKSIDAKIKMMDELKKEMKALDEETSQMMSKLSGDENQNKENETKQIEDFSES
                     KTEENQDEIQAEISKQESNDELKNEDKENK"
     gene            complement(17253..18317)
                     /gene="fbaA"
                     /locus_tag="ACJFD7_000292"
     CDS             complement(17253..18317)
                     /gene="fbaA"
                     /locus_tag="ACJFD7_000292"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HGG0859141.1"
                     /translation="MGVLDIVKAGVISGDELNKIYDYAKAEGFAIPAVNVVGTDSINA
                     VLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYGVPVILH
                     TDHAARKLLPWIDGLIEANAQYKKTHGQALFSSHMLDLSEESLEENLSTCEVYLQKLD
                     ALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFG
                     NVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGGSGSELKDIKNAVSY
                     GVIKMNIDTDTQWAFWDGVREYELKNRAYLQGQIGNPEGDDKPNKKYYDPRVWLRSGE
                     ESMIKRLEIAFEDLNCINKN"
     gene            complement(18317..19138)
                     /gene="peb4"
                     /locus_tag="ACJFD7_000293"
     CDS             complement(18317..19138)
                     /gene="peb4"
                     /locus_tag="ACJFD7_000293"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PEB4"
                     /protein_id="HGG0859142.1"
                     /translation="MKKFSLVAATLIAGVVLNVNAATVATVNGKSISDTEVSEFFAPM
                     LRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDPLYTKELDRAKDAILVNVY
                     QEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGK
                     ELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTN
                     FGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEYK"
     gene            19219..19845
                     /gene="nth"
                     /locus_tag="ACJFD7_000294"
     CDS             19219..19845
                     /gene="nth"
                     /locus_tag="ACJFD7_000294"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140078 - class I DNA-(apurinic or
                     apyrimidinic site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HGG0859143.1"
                     /translation="MKRNLEIKELFLKHFDKPVTELKFSNLYELLVCVMLSAQCTDKR
                     VNLITPDLFKAYPDIKSLANANLSSLKTYIQTCSFFNNKAQNLIKMAKAVCENFDGEI
                     PLDEQNLKSLAGVGQKTAHVVLIEWCGANFMAVDTHVFRVSHRLGLSKAKTPEATEED
                     LTRTFKDNLNYLHQAMVLFGRYTCKAKKPLCKECFLNHLCKSKDKELK"
     gene            19842..20492
                     /locus_tag="ACJFD7_000295"
     CDS             19842..20492
                     /locus_tag="ACJFD7_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HGG0859144.1"
                     /translation="MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFY
                     LNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFEDDTNIPKKYRTTWSDYKNSGYTR
                     GHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
                     LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF"
     gene            20503..21135
                     /locus_tag="ACJFD7_000296"
     CDS             20503..21135
                     /locus_tag="ACJFD7_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HGG0859145.1"
                     /translation="MEINALTITTLYIIGISAEGMTGALAAGRHKMDLFGVIFIALVT
                     AIGGGSIRDVLLGHYPLTWVKHPEYIILICFCALVATKIPRVVAKLETLFLTLDAIGL
                     VVFSILGAQIAIDQNHGFIIAVAAAVITGVFGGILRDILCMRIPLVFQKEIYAGIAII
                     AGVIYYSLIIWLELNALVCTLLTLFIGVFARLLAIKYQWSLPIFSYNEEK"
     gene            21193..21627
                     /locus_tag="ACJFD7_000297"
     CDS             21193..21627
                     /locus_tag="ACJFD7_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HGG0859146.1"
                     /translation="MRRLSILLAILIVINITACDSKTENYYKNLPSEAKEKVKECKES
                     GTLSEDCINALKVSVKPTNEEGKYSPNTPKKSDNQILEALKQNDLKKEKTTKDINQSS
                     ENNESIIIPPIAETPSEIYPSKTTENNQSSIFSDDVNMTQEK"
     gene            21624..21845
                     /locus_tag="ACJFD7_000298"
     CDS             21624..21845
                     /locus_tag="ACJFD7_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HGG0859147.1"
                     /translation="MTMKITLFLSLIGIFFAACEQTKSVEYYQNHPEEAKKRSLECRH
                     KAIISQDCVNAYKIGFPKDEWEDENISNP"
     gene            complement(21835..22545)
                     /gene="cmoA"
                     /locus_tag="ACJFD7_000299"
     CDS             complement(21835..22545)
                     /gene="cmoA"
                     /locus_tag="ACJFD7_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HGG0859148.1"
                     /translation="MMKDELFKQNPKKQFEFDKSVASVFDDMINRSVPFYGENLELCG
                     NLLAKILPTNASVCDLGCSSANFLIFLANLRKDFKLFGVDNSASMLEVAKSKAKAYGL
                     DISFFEANLCEFDFFTCDVFVANYTMQFIRPPKRQELLDKIYKNLNSKGILIMSEKIL
                     YEDAFLSKNIIELYADYKEKQGYSKFEIAAKREALENVLIPYSQKENLNMLEKAGFKK
                     IESIFKWANFETFIAFKD"
     gene            complement(22532..23386)
                     /gene="ribF"
                     /locus_tag="ACJFD7_000300"
     CDS             complement(22532..23386)
                     /gene="ribF"
                     /locus_tag="ACJFD7_000300"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003919 - FMN adenylyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HGG0859149.1"
                     /translation="MLNIFTTISKINITSLAIGCFDGMHLGHLKLVKYLDENGALLVI
                     NKFKGQFLCSNRQKEEISGKKVIEVDFESIKSLDGRDFLSFLKKEFVNLKFIVVGYDF
                     SFGKNRAYNAKDIEFLSGIKTIIVDEFSIDGIGVHASLIKDFLSKANLQKAKEFLGRD
                     YSIKGKMIKGQGLGSKELFATINLDCEGYFLPQNGVYVTLLKSQRKTYKSVSFLGVRS
                     SDENFAIESHILEELGENFTQGEFFELEFISFLRENQKFQDLKKLKNQIAKDIEQARE
                     LLRKNDER"
     gene            complement(23352..24113)
                     /gene="tlyA"
                     /locus_tag="ACJFD7_000301"
     CDS             complement(23352..24113)
                     /gene="tlyA"
                     /locus_tag="ACJFD7_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HGG0859150.1"
                     /translation="MRFDFFVSKRLNISRNKALELIENEEILLNGKSFKASFDVKNFL
                     ENLKKTQDLNPEDILLANELKLDLLSEIYVSRAALKLKKFLEENDIEIKHKNCLDIGS
                     STGGFVQILLENQALKITALDVGSNQLHPSLRANEKIILHENTDLRAFKSEEKFELVT
                     CDVSFISLINLLYYVDNLALKEIILLFKPQFEVGKNIKRDKKGVLKDDKAILKARMDF
                     EKECAKLSWLLKNTQKSSIKGKEGNVEYFYYYIKN"
     gene            complement(24110..25114)
                     /locus_tag="ACJFD7_000302"
     CDS             complement(24110..25114)
                     /locus_tag="ACJFD7_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859151.1"
                     /translation="MSLLKNSSYILTLLSLFGFLLTWQRSAFSLFFLISIFLTLFWEF
                     FLFLKLRKNIIKEATLIKGSLFYRVSMGDFYLYIFSFFLAIFGLVSLFLNFLNLEKID
                     FVFIFIILPLLMIFLKKELHLQFVDNAYNDFRIVVIASFFTALFYAFYGLFFTYNELL
                     NLELFSRKIIAYKSASFVYFDFLSEFLHFVSNLKFFIFSYFGYLGFRALNFIFDFFNF
                     FMFCSLLAFVFNFVLKIKIKIIVLFLCFIMVLGNYFLKEQRNNALKSEQEQILLWMNN
                     FNFLKDNNLSLIQKEKDLFEKDLKDLREIFKKNAFEIGIWWFSKEKEDLEKRINESLK
                     "
     gene            complement(25095..27038)
                     /gene="ligA"
                     /locus_tag="ACJFD7_000303"
     CDS             complement(25095..27038)
                     /gene="ligA"
                     /locus_tag="ACJFD7_000303"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HGG0859152.1"
                     /translation="MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFE
                     EQNKDEISKDSPTQKIAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAKCEKNF
                     FIEPKFDGASLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIAYKERIEIR
                     GEVVILKDDFEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGE
                     NTLNFTKHSEVMQFIRELGFLKDDFVRLCANLDEVLKAYDELLALREKKPMMMDGMVV
                     RVDDLALCEELGYTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVN
                     LDGVVVKSATLHNFDEIARLDVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRP
                     KLCPTCQSELLDEGTLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK
                     KITTLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVA
                     AKKLSLSFGKEWYKQSFEAYANLEGFGEQMALSLCEFTRVNRTRIDEFYKLLNLKIEK
                     LEIKSDGVIFGKTFVITGTLSRPRDEFKALIEKLGGKVSGSVSKKTDYVLFGEEAGSK
                     LSKAKELEVKCIDESAFNELVKE"
     gene            complement(27039..28181)
                     /gene="folP"
                     /locus_tag="ACJFD7_000304"
     CDS             complement(27039..28181)
                     /gene="folP"
                     /locus_tag="ACJFD7_000304"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HGG0859153.1"
                     /translation="MKFFKINPNTDFNLLCSFINPHKMGQKIMSEKTKIHFIFIKDIS
                     TPAANILKQDALRVGAELITHKEVITAKITHSNALLMASKEQIQKLVVKEKLQDFGLK
                     NLALFLQKDFLKPKKAELMAVINVNEDSFNAKSRVSEEDFEKRLNDFLALKPEYIDIG
                     AVSSRPGSEYCGKEEEFKRLKKVLDLIYEKNYYEQAIFSLDSFDEYCLEYALNKGFKL
                     INDITSLRNLNLAKLASKYGAKYCLMHMQNNPNNMQDNPFYEDLLDEMTLFFKEKLEL
                     LESFGVKESILDVGIGFGKSAGHNMILIKHLEHFLQFNKPLLIGASRKSVINAYFQSE
                     IKDRLAGTLYLHLKAFENGASIIRVHDLYEHKQLFALAQAMDNIGV"
     gene            complement(28183..28782)
                     /locus_tag="ACJFD7_000305"
     CDS             complement(28183..28782)
                     /locus_tag="ACJFD7_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HGG0859154.1"
                     /translation="MFISKIIISEDFLGIKEEMINNFGIKKLRFFIPQNEFLLDDARA
                     VEKESYIAETEEKIIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVIPSKNLLLPTIK
                     SRLICEKRKVEKDVKKLDLDLKRMDLRMLFDFLQKNENLDKNELMDQIALLAKECVKY
                     KDFNAEELEFFYESYELAKLNSKSGVLLATLLLNYYTKK"
     gene            complement(28788..29324)
                     /locus_tag="ACJFD7_000306"
     CDS             complement(28788..29324)
                     /locus_tag="ACJFD7_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HobA family DNA replication regulator"
                     /protein_id="HGG0859155.1"
                     /translation="MSDFLSFTLENIRNGGAFMAWLESRRLEWAPLMAARLKYLLEGR
                     TFVLMCDEQRSWYEEYFLKNINSKAARPMLPFVSLNSLCKKKVQSSEDIALLNDLLDI
                     SFPNGYVYFYIGSASDNKSLIAKSRDDSLLWLFDEQLQDSFYLNSKDKDLDIKLISLY
                     QLFDVSLDAILFSKVQLG"
     gene            complement(29325..30527)
                     /gene="lysC"
                     /locus_tag="ACJFD7_000307"
     CDS             complement(29325..30527)
                     /gene="lysC"
                     /locus_tag="ACJFD7_000307"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HGG0859156.1"
                     /translation="MLIVQKYGGTSVGTLERIEAVANRVIQSVQQGDQLVVVVSAMSG
                     VTNTLIEQAEYFSKTPNGKDMDMLLSSGERVTSALLSIALNEKGYPAISFSGRKAGII
                     TDSVFTKARIHHIDTKAIKSELQNGKIVVIAGFQGVDEEGNVTTLGRGGSDLSAVAVA
                     GALNADLCEIYTDVDGVYTTDPRIEPKAKKLDKISYEEMLELASLGAKVLQNRSVELA
                     KKLNVNLVTRSSFNNNEGTMITKEDGMEQALVSGIALDKNQARVTLRNVEDKPGIAAE
                     IFSVLANENINVDMIIQNVGVDGATNLGFTVPQNELELAKNAMQKILSSKTTIESDSA
                     VVKVSIVGVGMKSHSGVASKAFKALADEGINIGMISTSEIKISMIVHEKYGELAVRAL
                     HECYGLDK"
     gene            complement(30529..30999)
                     /gene="nudH"
                     /locus_tag="ACJFD7_000308"
     CDS             complement(30529..30999)
                     /gene="nudH"
                     /locus_tag="ACJFD7_000308"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HGG0859157.1"
                     /translation="MENEKNYRPNVAAIVLSSSYPFECKIFIARRSDMDNIWQFPQGG
                     IDKGESVKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPSKIVKKMYPYDGQIQKYFL
                     VRLKHGATININTKHPEFDDYQFVSVKQIFEMINHFKKNIYVKVIKYFEEKGYI"
BASE COUNT        10552 a         5416 c         3876 g        11206 t
ORIGIN      
        1 atcaatcctt atttcgcctt agttttattt atatatacct tttttataca ctattttgcc
       61 ttgctaattt ttgtgcgtcg caagcgttat attttcgcta cttgcatggc ttttattatt
      121 ttaaatttat gtttttttaa atactttcct agcatcaaag gaagtgttga tgagatatta
      181 aattttttcg gtttagaatt tttaaatatt gatttagtat taccaatagg aattagtttt
      241 tataccttta cttctatcac ctatcttgta gaagtttatc aaaaacgccg tttagaaagt
      301 tttttaaatt tagcaacctt cttatcattt tttccaacac tactttcagg gcctattatg
      361 cgaagttctt ttttctttga gcaggcctat caaaaacgcg aatttaaaca tgcaaattta
      421 atcatcatct tgcttgtttt tggtatagtt aaaaaagttt taatagccaa ttaccttgga
      481 atttatgcta aaagtatttt agactttcca caatcttata atttcataca acttttaagc
      541 gcaatttacg cctatgcgat tcaaatatac tgcgatttta gcggatatgt tgatttagtt
      601 tgtgcttttg ctttaatgtt aggttttacc cttccatcta actttaacat gccttatctt
      661 gcaaaaaacc taaaagattt ttgggctaga tggcatatca gtctttcaac ctttataaga
      721 gattatatct atataccttt agggggcaat agaaaaggaa tgccacgcac tatagttaac
      781 atactcatcg cttttatact ttcaggtata tggcatggca atacacttgc ttttattgtt
      841 tggggtttat tgcatggtat tggcatagtt tttatacatt tgctagcttt aagcaaattt
      901 agtttacaaa aaattccagc tttaggaaga tttttaacct ttcaatttgt atgttttact
      961 tggattttct tttactatag caaaaatcta gaagatgcaa tagaatattt taaagcttgt
     1021 tattataatt tcttccaaat tccatcttat aacgatatct atatgttggt tgcttttggg
     1081 gttcttttta tgatctatcc tttatttatt aattttaaag aatattgcat taagatttta
     1141 aatcttactc catttttact aaaacctttt atcatagctt ttattttact tttggttttt
     1201 gcttttatgc cagatggaat tcctgatttt atttattcga gtttttagat gagtgtggtt
     1261 agatttttct ttattttgat tatagtgctt ggcttggttg ttgtagttat gaatcagagc
     1321 attagctctt atatagaaca aaaatatcac tttgcattct atcctcataa tgatctttta
     1381 aaagaagcca atggcttcaa aattaaatta gaacaaattc gtgcaatttt aagcaacgaa
     1441 cccttgcctc aaactaatga agaaactaca aatcaagaaa ataaatcaat agatgaaaac
     1501 ttaagtaaaa tagataaagt tctaaacact ttagaaaatg atgaaaacac ttctcataaa
     1561 gaaacaaatc caaccttaat ccgagatgca aatattagtt ttatcgacaa taccaaatta
     1621 gaactacaaa atggagatga gtttttattt atcggagatt ctttaatgca aggtgttgca
     1681 atagccttaa atagagattt aagaaattta aatcttaagg taaccgatct tagtaaacaa
     1741 aatacaggcc tttcttataa atcctatttt gactggtcaa aagccaccaa tgaagctttt
     1801 attaaaaact caaatattaa atatcttgtt gttcttcttg gcgctaatga tccttgggat
     1861 attaaaaaag gaggaaatta ccatcgtttt ggctcccctt cttggataga tatttacaca
     1921 agtcgtgtag atgaaatcat taaaatcgct aaaaaacata aagccaaagt tttttggttt
     1981 gaaatccctc ctgtaaaaaa agaagatttg aacaaaaaaa tacaagtgct caataaaatt
     2041 tacagcgatg aaattcttaa aaataaagaa atttttatca acactaagct attttttagt
     2101 gtcaatgatg aatactcagc ttatataaaa gatgaaaaca atagaagtat aaaagtaaga
     2161 acagatgatg gggttcattt tactccaagt ggtgcaagag aaatgtctaa acttttatta
     2221 gaacacataa aacttaagga agaaaatgct agtaaataaa tttaaaatta tcttattgtt
     2281 ttttattatt tttactagct cttatgcgca aaatttaaat acaaatgaca caatagattc
     2341 catactcaat caaaacaaaa atcactctgc tttaacaagt tatgtattaa aaaaagatct
     2401 taaaaatcta gaaaaaaaat tagaaaaaaa tcaaaacata ggaattagaa tttatggaga
     2461 ttctcatatg gcggctgatt tctttccgcg tgtcataaga ggatatttaa tccgctctaa
     2521 ctctataggt tttgcctatc ctttacagcc caaatatcaa caaaatctta atcttgttta
     2581 ttcttataaa aactttgaaa ttttaaactc aagaaatcct gctaatgctg gacataattt
     2641 tccattaggt gggataatag ccaaagcaaa aatcaaaggc gcaaaaatca accttgatac
     2701 aaccttagat aaaaaaaaat tcaagatagg atttttattt aaagccaaac aaaataccaa
     2761 tgcttttagc atcaaagatg caaaaaacca aagctatgag ttaagaacta cacaaattaa
     2821 caaatggtct tataaagaac tagaacttga ttttcctttg caaatttcag ccttacaaaa
     2881 ggatgctgaa ctaggaggat atttcatcac aaataaagat aataatgttt tcttagatac
     2941 cattgcaatc aatggtgcca aaagtgattt atggctctct tggaatcaaa cagttgtaaa
     3001 aaaagaacta ggacttttac acaatgattt aattattctt gcctatggtt ctaatgatgc
     3061 actctttaaa gggtttgaaa aacaaaaatt caaaaataat ttaaaaaaat ggattagtat
     3121 tttaaaaact tacaataaaa acgctgttat catgctaatc tctccaccaa ctgtagttca
     3181 aaaacaaggt aaaaactaca agcttgctcc tgattttttt accatacgca aagcattata
     3241 tgaagttgct aaagaagaaa aaactcttat ttttgatatg catcagttta tgcaagatag
     3301 tgggggaaaa aacaaatgga tagaacaaaa gctttcgctc aatgatgtac atcttactat
     3361 aaaaggctat gagctgatgg ctaaaaagtt actcgaggat ttaaaaaata ttatcgatta
     3421 ttaaatttaa tacttaggaa attctaagtt ttcatcatta aaacttaaag ctgtgatttg
     3481 atagtaagaa ttaatggttt ttaaaagatt aaatctagct cttaaaaatt cttgctgggt
     3541 agaatttaaa gtattgtttg catccaaata atcttttaat tcactttttc ctaaaatata
     3601 tttttcataa tacgccttag tgataagctc ttgtttaatg ttaatatttt gcaaattttg
     3661 caaaagcaag gtgtcgcttt gataatcttt ataattcaat gcaaattcat tcatcgcact
     3721 ttgcaaggct tgctcataag aaattaaaag ttgctcataa gtaaattgtg aaattttgat
     3781 attttgcttt actctaccat aatctaagaa aggtaaagaa atcttaacat tgccacttaa
     3841 aatttcaaat ttaaaactat catcgatttt tttatcactt ccgcttaatg ctccacctaa
     3901 agaaatacta ggcaaaatag atttttgcat ggaggaataa tccttaaagg ctgattttaa
     3961 gctattgagt ttagatctca catctgcacg gtacgctaaa gcttttaaag gtatattaaa
     4021 atcaggactt aaggttttaa aatcatttaa agataaagtt ttaaaatact ctatgtaagc
     4081 aaaaccttct tgccttgcca ataaatcttg taaatttttt atgagtaaat tacgattttg
     4141 atcattgcct aataaatttt gtttagctct taataagctt tgttctatgt ttaaaagatc
     4201 taattcttct atttttccaa gcttgtattt ataattataa agctctttca tttgttctaa
     4261 atttgaaaga taagctcgaa gcaatttatc tacatcgtta aaataagcca gctcaaaaac
     4321 atcatttaaa gctgtattga tcatgcttat ttttaaattt tcaagatcat aagcacttgc
     4381 ttttgcacta aattcactcg cacttgcact atctcttaat tttccataaa tatcaagctc
     4441 atagcttaaa tttaaagaat tattgaaatt tttactttgt ttgcctgaat ttaaatcttt
     4501 atctccacca aaacccaaat ttccacttaa agtcggatat aaatcataat caatcaaatc
     4561 agctctagcc aaagccgaaa gcaaagtttt tctagcaata ttaatatcac tattattcaa
     4621 taaaacaaaa tttagaaatt catttaattt tgcattatca taagatctat accaatcata
     4681 agtaagattt aaatctttca tttgttcttg agttaaatca acttctttag gcaagctaag
     4741 ttttacacca caagcgctca agaaaaatgc taaaaaaatg ctaagtatta ttttcatttt
     4801 attcctttga taatgcacta ataggattta aatttgctgc atttcttgca ggaaaaaaac
     4861 caaaaaccac accgataaac atagaactta aaagtcccaa aagcacagaa taggcattta
     4921 aaatcatagg aaaatccgta cttaaagtat taaaagcaaa aataacaaaa atcgataaaa
     4981 tcacacctaa aatcgcccct atagtacaaa tcataaccgc ttcgattaaa aactgcatca
     5041 taatatcttc tcttctagcc cctatagcca tgcgtatgcc tatttctctt gttctttcac
     5101 ttacagaaac aagcatgata ttcatcactc ctataccccc aacaatcaaa gcaatcacag
     5161 ccacacaagc ggtaagtatg gttgtagtgc gtttatttgc tgtaatagct tgcttaaaag
     5221 tgtcagaatt aaaagtaaaa aaatcctttt gtccgcgttt aatttctaaa attcttataa
     5281 tagcattttc agccaaagtt gaactcacat catctttaac cttaactatg atttcacgca
     5341 aatttctatc tcctgtaagc ttattcatca gtgttgtata gggtatataa agacgtacta
     5401 cattatcttc tataggcttg tctgtatctt tttgcaaaac tcctataatc ttaaaaggtt
     5461 gagaattaaa aagcaccaca cgacctaaaa tattttcact tttttcatca ggaaaaagat
     5521 tttttttagc attaaaatcc aatacagcaa cattggtact attttttaca tcatcattat
     5581 ttaaaattct tcccgcatct atccttaaac cttctatagc aaaattattt acccctactc
     5641 cttcagctct tgcgcttaaa gaaatattgg tataagttgc cactcctgaa gtatttgaat
     5701 gagcatcaac tgcttctaaa tattctaaag atcttaatgt ttctaaatca ctaaaattaa
     5761 gccttgtttt acccgaacgc aaatccccaa atccttttcc agggcgaatt tcaatagtat
     5821 ttgtcccaag tcttgcaata gactcaagca ctttagcttg agagcctaat cctaaagcta
     5881 caacacaaac tacagaagca atacctatga tgattccaag catagttaaa atagaacgaa
     5941 gtttgtgtgc aagtatggaa gaataagcta tcttaaaaca ttcaaaggct tgatttttaa
     6001 gcaaagtaag tgtttttttc tctttgggca ttgtttttaa aataagtttt tcttgagctt
     6061 tttccttttt agtatcgctt aaaatttctc catctttaat ctctataacc cttttagctt
     6121 gtgctgcaat ttttggatcg tgagttacta agactatagt atgaccttgc tcgttaagtt
     6181 tttgtaaaat ttcaagcacc ataataccgc ttttactatc caaagctccc gttggctcat
     6241 cagccaaaat aagctctccg ccattgatta aagctcttgc tatagaaacg cgttgttgct
     6301 gccctccgct taattcgttt ggcttagaat ctaacttgtg agctaattct aaatcattta
     6361 agagtttttt agcattttga cttctttctt gtaaattttt tcccgcataa actgcaggta
     6421 aagaaacatt ttctttagca ctcagcaagc ttaaaagatt atatctttga aatataaagc
     6481 ctattttttc acgccttaat cttgcttttt catcgttatt aagtttagtg acttcatact
     6541 catcaaaaac ataagttccg ctacttggcg tatctaatgt tcctatgata tttaaaagtg
     6601 aagttttacc acttccactt tgtcctataa tagcaacaaa ttcacctttt tctatactta
     6661 aacttacatt ttttaaaatg gcattttcgc ctatattctt gcaaatattt ttaagaaaaa
     6721 tcattaaaat ctcaacttca ttttagtggc taagccatca gcacttgagc ttactatcaa
     6781 ttcttcattt tcatttacgc cttctaaaat ttgagtattg atagaatctt taatgccaag
     6841 tttgacatat tttttaacag ctttttgatt ttctaaaatt tcaacataat aaccttttgg
     6901 atcgctttta attgcataag ttggcactgc taaaacagcc tttgcactcg ctacgacaat
     6961 ttcattttgt atactcatac caatacgcaa aaaatcatct ttattggcta cataaaattt
     7021 tgcgtaataa taaatagcat ttgatgagct tgagcttgaa gaactcgaac ttgatgagct
     7081 tgagcttgta ctagaatcac tcacttcagt atcagctgga tctatacttg caatcttagc
     7141 atgataagtt ttttgaggat cattaagcaa agaaaaatca agctctgttc ctacttttat
     7201 cttactcaca tcagcctctg ctatttccat tcttacttcc atttcgtcta aattagctat
     7261 acggactata gtaggagtgt tttgattagc attaaccgtt tgtccttcat ctacagctac
     7321 attaatcaca acaccatcca taggagcagt aatggttgta taacctaaat ctttttgtgc
     7381 atttttaaga gtgatttcaa gctgaactac ttgagcatta agctctgcaa cattggcttt
     7441 taaagtataa taattatttt tttgagtttc taaattttca agagaacttg ctttagctgc
     7501 ataaagtttt tgctctcttt gatattgctt attcgcaatc tcaagggcaa cttttttact
     7561 ctctaaatta gccttagcac tttcaagctg agcttttgta atatctaaat cgttttgttg
     7621 tttatctttg tcaatttgag cgatcaaatc accttgcttt acatgagttc ccacatcaac
     7681 ataaagtttt ataatttgtc cactaacttg agcacccaca tcaacttgat ctttggcata
     7741 tacctttcct actgcctcta tggtttgaga tatatctttt ttttgtattt tttgagttaa
     7801 atagctgatt ttttcatcat tattaaaaaa aataaaataa gccccaacac ttccaagtat
     7861 tgcaattaaa atgattaaaa caatcttctt tttcataata acaaatccta aagaaaaatc
     7921 aagattaaat tttactcatt ttttgtgaat tttttgtgaa tttttaattc tattttataa
     7981 atttaaaaat tctaaagcca tcatcacatc accctgcatt aaaactttta aattttcatc
     8041 atcccaacaa aaagtagaac tatgatgcaa agctggatga tttaaatcct ttgaaattcc
     8101 aacaaataca taagccccca ttctttctcg tgttaaaaaa gcaaaatctt cagcccccat
     8161 gtcaggttta gaagaaacaa tgatattttc ttctcctaag acctttgcaa aagcttttct
     8221 tgctattaaa acagcttttt catcattaat caatggagga aattctttag tatatttaag
     8281 cttataatct ccgccattgg attttgctgt agcagcagcc acttcttcta gagaactttt
     8341 taaaatatct tgtgttttat catttaaaaa acgcacggtt ccttttaaat aagcatttgc
     8401 aggaataaca ttataagtag ttcctgcaca aatttgacct acggtaatca cccctgcttc
     8461 ataaggggct aaacgcctag aaacaacact ttgcatatta tttacaaatt gcgttgccat
     8521 aattatagga tctatacaag tgtgcggatg agctccatgt cctcctctgc caataaattc
     8581 caaatcaaaa atatccgttc cagccatcat ttcgccactt acaatttgag cagtattttc
     8641 aagcaaaggc ccccataaat gacaaccaaa aactgcatta acataaggat tttccaatac
     8701 acctgattct atcataggtt tagctccacc gcttccctct tctgcgggct gaaacataaa
     8761 tttaatcgtg ccacaaaatt catctttgag ctcatttaat atcaaagcag ctcctaaaag
     8821 tcctgctgta tgtccatcat gtccacatgc gtgcatctta ccatcaattt ttgaagcata
     8881 acttagatta gttttttctt gtacaggcaa agcatccata tccgctctta aaagaacaca
     8941 ttttggtttt ttccgactct tcttttttcc ttctataata gctaaaattc ctgtttttgc
     9001 aatatttttt tgatatttaa tgccaaactc atctaaaatt ttacacacta aatgggctgt
     9061 attttcttct tcaaattcaa gctcaggatg catatgaatt tgatgtctta aatcaactac
     9121 tttatcatag tactttagtg ctaaattttc aaccagcttt tgcattcttt tccttaatct
     9181 aaatctttta ttttctcatc tgctttttta ctgtcaagtt tttccaaatt cgcctccatt
     9241 tttcgtattt cttcttctcc actacgcact aattttgcat caattttgga aaaatctcca
     9301 gtttttttat ttggatattc taccttagaa agtataaaac gcaataaatt taatcttgct
     9361 tttttcttat catcagaaga aataatagtc caaggacaag ttggagtatt agatgctaaa
     9421 agcatagagt atttagctaa agtatattta tcccataatt cttgcgattt ttgatccaca
     9481 ggagataatt tatattgttt aagtggatcg cttcggcgtt tttcaaaacg ttttttttgc
     9541 tcgtcttttg atactgaaaa ataaaattta aaaaaaataa tatcactact tgaaatcata
     9601 ttttcaaaca aaggcacttc tcttaaaaaa tctttatgtt gttgcggtgt acaaaaaccc
     9661 ataaccggtt ctactcctgc acgattatac caagatctgt caaaaatcac aatctcaccg
     9721 gctgagggca aatgtgctat ataacgctga aaataccact gtgttttttc cacatcacta
     9781 ggtttttcaa gagccacaac gcggcaacca cgtggattta aatgctcaat caaacgttta
     9841 atcgccccac cttttccagc cgcatcacgc ccttctataa gtataagaac ctttaaaccc
     9901 ttggctttaa catgattttg aaatttcaaa agctcaattt gcaaattctt taaatctttt
     9961 tcatattcta ttgtactttt ctttctttta acagaaacat aaatttcatt ctttttaaca
    10021 gtcgcttgcg cttttggaga attattttct tgcattttca aacctttata aagtatttaa
    10081 agtaaattta ccataataaa ttataattga agctaaaaat aaaggaaaaa ataagttttt
    10141 aggaaattta tgcgtatttt tggtattatt ttattaagtt tttgtttatg ttttgcttct
    10201 atattatctt taaatgaagc ttttaatgta aaatcaaact cttataataa ctctatctca
    10261 attgatattg aacttggaaa agatatttat ctttattcta ataaacttaa attatatata
    10321 aacgaaaaag atataagttc tttgattaat ctacctcaaa gttctacaag aggtaatgaa
    10381 aatgtttatt atcaaaaatt aaatttagct ttgccaaatt tattactaga gcgctttgca
    10441 aaaaatacca caaatttaat caaactcgaa tttcaaggtt gttccgaaca aggcttgtgt
    10501 tataatcctc aaacttggta ttttgatctc atttctaaaa aagatgcttt tgaaatttca
    10561 aaaccttaca aaactcaaaa aaccgataaa aaaactaaaa ttgaatctga agaaagcact
    10621 atagcaaatt ttttagcaac agataacttt ttttggattt tgctaagttt ttttggctat
    10681 ggacttttac tctccttaac accttgtatt ttacctatga ttccgatttt atcttctctt
    10741 atcatagcaa aaagtaatgc taaattttca aaaaaatata gtttttttct ctcttttatc
    10801 tatgtttttt tcatgtcctt agcctatgct attgctggag ttatagcaag ttttctagga
    10861 gcaagtattc aaggaatttt acaaaaacct attattttaa ttctttttgc tctaattttc
    10921 atagcttttg cttttgctat gtttggagct tttcgttttg aattgccgtt aaaatttcaa
    10981 acctttatac ataaaaaaag cgaaaaaggg aagggagttg taggtatagc catcatggga
    11041 tttttatctg ctttaatagt aggtccttgc gtagcagctc ctttagcagg tgctttaatt
    11101 tatatagcca atacaggcaa tgctttatta ggtggtagtg cactttttat catgagtttt
    11161 ggcatgggta tacctttgct tttcataggt ttaggattag gttttattaa acctggtttt
    11221 tggatggaaa aagtaaaaat tttctttggt tttgttatgt tggctatggc tatttggata
    11281 ctttctagaa ttattgaaga aaattacatt ttaattgcct atggaatttt aggtgtattt
    11341 tttagtgttt ttatgggaat ttttgaaaaa agttttacaa taatttctaa aattaaaaaa
    11401 agtattttaa ttcttatttt agcttattct ctaagtattt tcctaggggg actttttggg
    11461 gctaaaaatt tcttaaatcc tttaaatttc aatactatat ctgcctcaaa acctgcttta
    11521 agctatgatt atatcaacaa ttttgaacaa ttaaagcaag aaatacaaac aaatacaaag
    11581 cccataatgc ttgattttac tgcatcttgg tgtgaaaatt gcaaactttt agatgaatta
    11641 acctttagcg atgaaagaat catacaaaaa atgcaaaatt acaaacttat caaagttgat
    11701 gtaagcgaaa ataataatga acaaattaaa accatgaaag aatttaatgt ttttgggcca
    11761 cctgttttaa ttttctttga aaatggaaaa gaaaaattaa aaatcacggg ttttatcagt
    11821 gctgatgatt tattaaaaaa actagaacca tgaaaattca aagtttgcaa atagggaaaa
    11881 ttaaaaacta taaaaatttc caaagcgcat ttattaaaga cacttaccta gaagaaatac
    11941 aaattgattt tctaggtatt ttagatgatc aaatagctga taaaattcat catggaggct
    12001 accataaggc tatttttgcc aactcttgtc aaaactatcc tatatgggaa agatttctta
    12061 ataaaaagct aaattttggc tcaatgggtg aaaatttgag catcgatggg ctttgcgaac
    12121 aaaatgtttg cataggtgat atacatcaat tttcaaatgc aatactgcaa gtaagcgaac
    12181 ctagaaaacc ttgtgtaaaa atttctaaaa ttcacaataa ttcaaatttt acacatgaaa
    12241 tttttaaaac gggcttaagt ggatggtatt ataaagtttt acaagttgga caaatacgaa
    12301 agcatggaaa cattaaaatt ttagaaaaaa attctacttc acttagtgta tttgaactca
    12361 atcgactttt ttactcccca tatcaaattc ttaagcaaaa tccgaattta ttagataaat
    12421 tagaaaaatt aaactctctc atatctcaaa attggcacga aacaatacac aaacgcttaa
    12481 aaaatactta cgatataagc tatatggata gcttataagt ttttaaagtt atttttaggt
    12541 aaaataattc ttttttgaaa ggataatcat gcaaagacaa acatggagca gcacactaac
    12601 ttatattcta acagttgctg gagcaaccat aggatttgga gcaacttggc gttttcccta
    12661 tcttgtagga gaaaatggtg gcggtgctta tgtattagtt ttttgtatag ctatgattat
    12721 cataggcatt cctgttattt tagttgaaaa tgtcataggc agaaaagcga tgacaaatag
    12781 tgtagatgct ttcaaacaaa aatggcaaag tattggatat atgggacttt taggaagctt
    12841 tggtataatg gcttactaca tggtacttgg aggatgggtt ttagtttata tttgggaatt
    12901 aaccctaggg aattttagcc ttgccaatgt agtaagcaaa gaatttactc atcagttttt
    12961 taacgacaaa atagccttca atcctttagg agttggtatt tttaccactg tttttgtaat
    13021 tattaattat attattttaa aaagaggcat tatagatggt atagaaaaat ccgtaaaatt
    13081 tttaatgcct ttattattta tctgtcttat tattgttgta ggacgcaatt taacccttga
    13141 tggagctatg gctggagtta aattttatct tgaacctaat tttagtaaaa ttttatcacc
    13201 aaaactttta atcgatgttt tagggcaagt cttttttgct ttatccctag gttttggggt
    13261 aatgataaca ctttcatctc atcttaataa aaatgaaaat atggcaaaaa ccgctattta
    13321 tacaggagtt ttaaatacta tcatagctgt tttggctggt tttatgattt ttccagcact
    13381 tttctcagcg ggacttgctc cagatagcgg gccttctttg gtttttgaaa ctttacctat
    13441 agcattttct catatccatt ttggcaccat tgtgtgtatt ttattttttg tcttactctt
    13501 gattgcagct ttaaccacaa gcttgccaat ttatcaagtt attattagcg tattagaaga
    13561 aaaatttaaa tattctaaaa atctttctat taacctaact ctagggttta tcttcatact
    13621 tggcaatctt ccttgtattc taacttatgg gccttggcgt gatattgtta tcatcaaagg
    13681 aaaaaacatt tttgatagtt ttgatttcat tagtggaaat attttgtttg ttttaactgc
    13741 atttttttgc tgtatttatg taggttggat tttaggcaaa caagaaagtc taaaagaact
    13801 tagcaataac aatacactta aaagttcatg gtttggaatt tggttttatt atgtaaaata
    13861 tatagtacct ttgattattt taatcatttt tatctatgga attttaaact gattttttaa
    13921 atttatatct ctctaacata gtggaatttc ctaaaattcc accttgatgt atataaagca
    13981 atggtttttt ccactcttgt tttaatgcta tacttaatcc taaaatatca tacaacaagt
    14041 caaattctat attgcacttt aactttaaat ccatataaag ctcataaaat tctttatacg
    14101 gcttagcaaa gtgatatttt ttatcacttg ttaaaaattc taaatttgaa aaatcatagc
    14161 ttggatctaa tgttaaaatt tgttttttaa gatatttaat atcacctaca caagcgcaag
    14221 taaatacttt aaatttagaa tactttgcca aaaaagctgc cgaagtgcct gtgcccgaag
    14281 gtaaaaaaat atcaaaatca agctttaaac tttgactttg catttgaatt tcttgagcaa
    14341 gttccatata gccatattga gcttctaaat tagctatgcc ttgttctata aaaacatcat
    14401 cttttttaca caaagacaaa gcaaattgct ttaaggataa agaatggata ttttctacaa
    14461 aatcaacacc attttctaaa gctaaagcat agtttccaca aggattattc ttaagaaaag
    14521 tagaaatttt ttcacaagca aaaacaagct tatatgatct ttgtttagca aaaatactta
    14581 atgccgccaa agcattactt tggcttcctc cataacttac aaaagattga tttttaggat
    14641 atctttgatg gatataaaaa gcaagtttcc tagctttatt tccattaatt tcccctaata
    14701 aatcatctct tttaatataa aattcaaatc cgttaaaatt gattttttgt ataggactaa
    14761 ttgttttaat gaaattcaaa gaatttttct acatccttta aagcattatc atttttaatg
    14821 ctaaatttta tttctatgcg acgactctta tccttatctt caactccgtt gacaaacaca
    14881 ggatctgaaa aagaacgtcc acttgccatt aaaagctttt gaagcttatc actcttataa
    14941 aaagtataga taaaattcat cacctcataa gctctttttt gcgacaaatc taaattataa
    15001 atataagatc catcactatc agtatgtcct tcaataatga tattttcaat gttagaaaaa
    15061 atttttggat cttcaagaat agcatcaaaa tattcgctta agatttttct caaacttgcc
    15121 tttgcctcat tttttaacac ataagaatcc ttatcaaaaa gtacttcagc aggcaaagaa
    15181 atagatcctg tcttttcatc tatagtgata ttattatcaa gtttgctttg taattccttg
    15241 cttaaatttt cacgaatcaa accaagattt tgcacctttt ctttagcttt ttgaaaatct
    15301 tcttgtaaat ttttaagctc ttcatctttt ttctctagtt gacctagtaa aatcaaaatt
    15361 tgcttatctt tattatctaa agttgagttt aaatctttgc ttaactgctt gtaatttgta
    15421 atattagcct ctaattctgc tttttgagaa ttagcaagat ttaaagcact agaagcattg
    15481 tttaaatcag aacttagttt aaacactatg gcttctttat ttctaagctc ttctttactc
    15541 tcctctaagc gtgcctcttg tttattgaga ttatctttaa tttcttttaa atcactttga
    15601 gttaaaacat attttacaac aatagcacct attagcaaaa taaaaacaaa cagcaatcct
    15661 gccattaaat cagcataagc tatccaaaaa ttgctatctt cttttgactc atttttcatt
    15721 tattttcttt atcttcattt tttagctcat cattgctttc ttgcttagat atttctgctt
    15781 gaatttcatc ttgattttct tcagtcttag actctgaaaa atcttctatt tgtttagttt
    15841 cattttcttt attctgattt tcatccccag aaagcttgct catcatttga cttgtttctt
    15901 catcaagtgc tttcatttct tttttaagct catccatcat tttgatttta gcatcaatac
    15961 ttttttcttc ttcatatact tctttaaatt tatgcatacc ttcaaacaag cttgctttaa
    16021 atccctcaaa aaccttttct tgactttcca acattgcttt ttcataaagt tcaaaatttt
    16081 taccaaaacg ctctactttt tcatcgaatg cacttagcgt cttatcaaga tgatgaattt
    16141 tatcactact gatatcgagc aagcgattat attgttctga cattcttgta ttgatttctt
    16201 ttaaattttg attgagcaaa cctataccat ttaacatttc actataaagc tttccaagat
    16261 cgcgttgatc tctttgtgct ttactaagct cacccatggt ttgtttgatg tgttcaccac
    16321 ttaatctaat agccttttct tctatattta gcatatcttg gaaaatacca aattttctat
    16381 caatagcatg atcaagctct gcaaaaaaat catcattact aacttgttta aaaattgctc
    16441 caattttttc aaaatgttgc aaactctcag ttaaatatct ttgatcaagc tcttcttttg
    16501 tccaaaaaaa tccacttgta gcgttttttt gacgatttag caaacgatct attttgcttt
    16561 taccatattt ttcaaaaaac atccaccata atgcaagaaa aattccataa attgaaacat
    16621 aaaaagcagt tcccactcca cttaacaaat ctgcaatttc ttgttctaaa gcggctgtat
    16681 cactagaact aaaatttggc attgaaaaag ctatactgat aaaagttcct aaaattccca
    16741 tcattggaaa aattgccgaa cctatactag caaaattctc atttcttgca cccttaatat
    16801 atgtataagc aaagtcatca aaattggcat ttgatttagt gtctttccct atggcaagaa
    16861 aatgcctcat aatatgtctt tttaaagcct gtttaaattc atctttttgt tgttcaaaaa
    16921 tactatacgc atactcagca ctatgtctag caaaaatcaa tgctgtaaaa aaaatcacac
    16981 ctgtcataat aaccgtatgt aattcgacct taaagtcaat tacattaaaa taacccaata
    17041 aaaccaaaat ataaagaaaa gctggaataa aaataatttt aaaataaacc aaagaacctc
    17101 ttgcatcttt gccttcaggc aaaacaagtt ctgaaatttc atctgattta atatccatga
    17161 aaccaatacc tcattaaaaa ttttatttta aagattgcta cttaatttga taaaaatttt
    17221 taaaacaaaa taaaactaag cctttaaaat gcttagtttt tgtttataca gtttaaatct
    17281 tcaaaagcga tttcaagacg ttttatcatg ctttcttcac cgcttcttaa ccaaacacgc
    17341 ggatcatagt attttttatt tggcttgtca tcaccttctg gatttccaat ttgtccttgc
    17401 aaataagccc tatttttaag ttcatattca cgcaccccat cccaaaaagc ccattgagta
    17461 tctgtgtcaa tattcatctt aattacgcca tagcttactg catttttaat atcttttagc
    17521 tcactaccgc taccgccatg aaatacaaaa tttataggct tatcgctatt taaagcaaat
    17581 ttatctttta caaatttttg cgaatttttt aaaatttcag gttgtaagct aacatttcct
    17641 ggcttgtaaa ctccatgtac atttccaaag cttgctgcga ttgaaaattt atcactaatt
    17701 tttccaagtc tttcatatgc aagagctaca tcttctggtt gggtataaag cttggaatta
    17761 tcaatacctg tattatccac tccatcttct tcgccacctg tacaacctaa ttctatttca
    17821 agcgcgacac ctaaagcatc aagtttttga agataaactt cacaagtgct aagattttct
    17881 tctaaacttt cttcgctaag atcaagcata tgagaactaa ataaagcttg tccatgggtt
    17941 tttttatatt gtgcatttgc ctcaataagc ccatcaatcc aaggcaaaag ttttcttgca
    18001 gcatgatcag tgtgtaaaat cacaggtaca ccataagctt tagcaagtaa atgtacatgt
    18061 ttagccccac taattgcacc taaaacttct ccattaggac aatttttccc tgcataaaat
    18121 tttgccccac catttgaaaa ctggataata actggagagt taactttttt tgcagcttct
    18181 aaaactgcat taatagaatc agttcctaca acattaacag cagggatagc aaaaccctct
    18241 gctttagcat agtcataaat tttattaagc tcatctccgc taatcacccc tgcttttaca
    18301 atgtctaaaa cacccattat ttatattcca ctttagcact atttaaaaga tcttggcctt
    18361 tttgattgat aactttttta aattcttcaa atttaagtcc gttttcaata ccttgtttta
    18421 cttcatcaaa tttgatttga cctttagctt gcgaattttc ttttaagatt acatgataac
    18481 caaaattcgt ttttactgga gttgtagtaa tagtaccatt tttaagcgcg aaagcagcat
    18541 ctgtaaaagg ctttaccata gttgattgat caaaccaacc aagctcacca ccttggtttt
    18601 ttgaacctgg atcaattgat ttctctttag caagctcgct aaatttagca tctagttctt
    18661 taccttttaa acctttaagt tcgttaataa tatccttagc ttctttttct gtcgctacta
    18721 agatatgttt tgcttgcact cttgcaggtt ttacatattt gtctttattt tgatcataaa
    18781 aagctttaac tttagccgca tcaattttaa tagtatttaa aattttctct tgataaacat
    18841 taacaagtat tgcatctttt gcacgatcaa gttcttttgt gtataaaggg tctttttcta
    18901 aattttgttt tttagcatct tgcaaaatta aatcttgcat aatatattgc tgaataagag
    18961 cttttttttg attatctggc aaagttttaa aatcctgtcc tctaagcata ggggcaaaaa
    19021 attcacttac ttctgtatcg ctaatgctct tgccattaac agtagctact gtagctgcat
    19081 ttacatttaa aactacacct gcaatcaaag ttgctgcgac taaagaaaat tttttcatta
    19141 ggtttccttt ttaataaaat gtatataaaa tcaattatat ctaaacttgg tttaaagcta
    19201 attaactaaa attaaaaaat gaaaagaaat ttagaaatca aagaactttt tttaaaacat
    19261 tttgacaagc ctgtaacaga gcttaaattt tcaaatttat atgagctttt agtctgcgta
    19321 atgctttcag cccaatgcac tgataaaaga gttaatctca tcactcctga tctttttaaa
    19381 gcttatcctg atatcaaatc ccttgcaaat gcaaatttat caagtcttaa aacctatata
    19441 caaacttgtt cattttttaa taataaagca caaaatctta taaaaatggc aaaagcagtt
    19501 tgtgaaaatt ttgacggaga aattcccctt gatgaacaaa atttaaaatc cttagcaggc
    19561 gtaggacaaa aaaccgctca tgtagtttta atagaatggt gcggagcaaa tttcatggct
    19621 gtagatactc atgtttttag agtttctcac cgcttaggac ttagcaaagc aaaaactcca
    19681 gaagctacag aagaagattt aacacgcaca tttaaagata atcttaacta tcttcatcaa
    19741 gccatggttc tttttggacg ttacacctgt aaagctaaaa aacctttatg taaagaatgt
    19801 ttcttaaatc atctttgcaa aagtaaagat aaggaactta aatgaaaatt ttcatctttt
    19861 tactcactat atctcttaat atttttgcct tagaacctta caagcctagt gctgattttt
    19921 cttcttattt taacaatata aattgctcgc aaatcttaga taagtttttt tatctaaatt
    19981 gctatgatta taaactcaaa ggcacaaaag ctgttgctta taaggtagaa gcttcaaatt
    20041 tgaaagatag acaaatcaaa aaacgccctc gctttgaaga tgatacaaat attcctaaaa
    20101 aataccgcac tacttggagt gattataaaa acagtggtta cacacgagga cacactgcac
    20161 ccaatgcttc ttttagcttt agtaaagctg ctcaaaattc agtattttta atgagtaata
    20221 ttaccccaca aaatgcacaa ataaataata aaatttggaa tgaaatcgaa caaagagaaa
    20281 gaaatttagc tttagaattt caaagtatcg aagttttaaa tttagtactt tacgataaag
    20341 aaccacaata cattaaaaac cgtattgcta taccaagttt ttatgtgaaa attattaaaa
    20401 ctccgaaatt taaagaatgc tatcaagcac caaaccacga agtaaatgat gaaaatatta
    20461 aacagtatca aataaattgt gataaatttt aaggtataaa ttatggagat aaatgctctt
    20521 acgataacca ctctttatat cataggtatt tccgcagaag gaatgacagg agctttagct
    20581 gcaggacgcc acaaaatgga tctttttgga gttattttta ttgctctcgt aacagcaatt
    20641 ggaggtggaa gcatacgaga tgtgctttta ggacattatc ctttaacttg ggttaaacat
    20701 cctgaatata ttattttaat ctgtttttgc gcccttgtag ccacaaaaat tccgcgcgta
    20761 gtagccaaac ttgaaacttt atttctaact cttgatgcta taggacttgt tgtttttagc
    20821 atacttggag ctcaaatagc catagatcaa aaccatggct ttatcatagc cgttgctgct
    20881 gctgtaatta ccggtgtttt tggtggaatt ttaagagata ttttatgtat gagaatcccc
    20941 ttggtgtttc aaaaagaaat ttatgcagga attgccataa ttgcaggagt aatctattat
    21001 tctctaataa tttggcttga gcttaatgcc ctagtttgca cacttttaac tctttttata
    21061 ggagtttttg caaggctttt agctatcaaa tatcaatggt ctttacctat tttttcttac
    21121 aatgaagaaa aataatttat cgttgcttta tacaagtttg ctaagatatt aaaaatttta
    21181 ggagattgat aaatgcgaag actaagtatt ttacttgcaa ttttaatagt tattaatata
    21241 acagcttgtg atagtaaaac agaaaattac tacaaaaatc ttcctagcga agcaaaagaa
    21301 aaagtgaaag aatgcaaaga aagcggaact cttagcgaag attgtattaa tgcattaaaa
    21361 gttagtgtta aaccaacaaa tgaagagggt aaatacagtc caaacacacc gaaaaaatct
    21421 gataatcaaa tattagaagc tttaaaacaa aatgatttaa aaaaagaaaa aaccacaaaa
    21481 gatattaacc aaagttcaga aaataatgaa agtattataa taccacctat agcagaaaca
    21541 ccttctgaaa tttatccttc caaaacaaca gaaaacaatc aaagttctat ctttagcgat
    21601 gatgttaata tgacacagga aaaatgacca tgaaaataac tcttttttta agccttattg
    21661 gtatattttt tgcagcatgc gaacaaacca aaagtgtaga atattatcaa aatcaccccg
    21721 aggaagcaaa aaaaagaagt ttagaatgca gacacaaagc tatcattagt caagattgtg
    21781 ttaatgcata taagataggt tttccaaaag atgaatggga agatgaaaat atttctaatc
    21841 cttaaaagct atgaaagttt caaaatttgc ccatttaaaa atactttcta ttttcttaaa
    21901 acctgccttt tctagcatgt ttaaattttc tttttgacta taaggaatta aaacattttc
    21961 taaagcctct cttttagctg caatttcaaa tttagaataa ccttgttttt ctttataatc
    22021 tgcataaagt tctatgatat ttttagacaa aaaagcatct tcataaagga ttttttcact
    22081 cataatcaaa atgcctttag agtttaaatt tttataaatt ttatcaagca attcttgtct
    22141 tttaggaggg cgaataaact gcatggtata atttgctaca aaaacatcgc aagtaaaaaa
    22201 atcaaattca cataaattag cttcaaaaaa acttatatca agtccataag ctttagcttt
    22261 tgactttgca acttcaagca tagaagcaga attatccacg ccaaaaagtt taaaatcctt
    22321 tcttagattt gccaaaaaaa tcaaaaaatt agcacttgag cagcccaaat cacaaacact
    22381 tgcatttgta ggtaaaattt tagccaataa attgccacaa agttctaaat tttctccata
    22441 aaatggcaca gaacgattga tcatatcgtc aaaaacacta gccacgcttt tatcaaattc
    22501 aaattgtttt ttagggtttt gtttaaaaag ttcatctttc atcatttttc cttaataatt
    22561 ctctagcttg ctctatgtct ttagcaattt gatttttaag tttttttaga tcttgaaatt
    22621 tttgattctc tcttagaaaa gatataaact cgagttcaaa aaactctcct tgcgtgaaat
    22681 tttcacccaa ttcttctaaa atatgacttt ctatagcaaa attttcatcg cttgatctta
    22741 cacctaaaaa actcacactt ttataagttt ttctttgact ttttaacaaa gtaacataaa
    22801 caccattttg aggtaaaaaa taaccttcac aatctaaatt tatagtcgca aaaagttctt
    22861 tagagcccaa accttgtcct ttaatcatct tccctttgat actataatct cttcctaaaa
    22921 attcttttgc tttttgcaaa tttgcttttg ataaaaaatc cttaattaaa cttgcatgaa
    22981 cacctattcc gtctatgcta aattcatcaa ctattatagt ttttatccca cttaaaaact
    23041 caatatcttt agcattataa gctctatttt tcccaaaaga aaaatcatat cccaccacta
    23101 taaattttaa attgacaaat tcttttttca aaaagcttaa aaaatctcta ccatctaaag
    23161 attttatact ttcaaaatcc acttctataa ctttttttcc tgaaatttct tctttttgac
    23221 gatttgaaca aagaaattga cctttaaatt tattaataac tagcaaagcc ccattctcat
    23281 ctaaatattt tacaagtttt agatgtccta aatgcatacc atcaaaacaa cctatggcta
    23341 aagaagtaat attaattttt gatatagtag taaaaatatt caacattacc ttcctttcct
    23401 ttaatgcttg atttttgcgt attttttaaa agccaactta acttagcaca ttctttttca
    23461 aaatccattc ttgcttttaa gattgccttg tcatctttta aaacaccttt tttatctctt
    23521 ttgatatttt ttcccacttc aaactgaggt ttaaaaagta aaataatttc ctttaaagct
    23581 aaattatcga cataataaag taaattaata agagaaataa aactcacatc acaagtaaca
    23641 agttcaaatt tttcttcact tttaaaggct ctaagatctg tattttcatg caagataatt
    23701 ttttcatttg ctcttaaact tggatggagt tgattactac ccacatcaag agcagtgatt
    23761 tttaaagcct gattttcaag taaaatttga acaaaaccgc ccgtactaga tcctatatca
    23821 agacaatttt tatgttttat ttcaatatca ttttcttcta aaaatttttt taatttcaaa
    23881 gctgctcttg aaacataaat ttcacttaaa agatccaatt ttaactcatt ggctaaaagt
    23941 atatcttcag gatttaaatc ttgcgttttt tttaaatttt ctaaaaaatt tttcacatca
    24001 aaagaagctt taaaactttt accattaagt aaaatctctt cattttctat aagctctaag
    24061 gctttatttc tactgatatt taaacgcttt gaaacaaaaa aatcaaatct cattttaaac
    24121 tctcatttat tcttttttct aagtcttctt tttctttaga aaaccaccaa atacctattt
    24181 caaaagcatt ttttttaaaa atttctctaa gatctttaag atctttttca aaaagatctt
    24241 tttctttttg aattaaactt aagttattat cttttaaaaa attaaaatta ttcatccata
    24301 aaagtatttg ctcttgttcg gattttaagg cattatttct ttgctctttt aaaaaataat
    24361 ttcctaaaac catgataaaa cataaaaata aaacaattat ttttatcttt attttcaaaa
    24421 caaaattaaa aacaaaagcc aaaagagaac aaaacataaa aaaattaaaa aaatcaaaaa
    24481 taaaatttaa agccctaaac cccaaatatc caaaataaga aaaaataaaa aattttaaat
    24541 ttgaaacaaa atgtaaaaat tcagataaaa aatcaaaata aacaaaagaa gcactcttat
    24601 aggcaatgat tttcctagaa aaaagttcta aatttaaaag ttcattgtaa gtaaaaaaaa
    24661 gcccataaaa tgcataaaat aaagcagtaa aaaaactagc gataacaact attctaaaat
    24721 cattataagc gttatctaca aattgcaaat gcaattcttt ttttaaaaat atcatcaata
    24781 aaggtagaat tataaatata aaaacaaaat caattttttc aagatttaaa aaatttaaaa
    24841 ataaagaaac aagtccaaaa atcgccaaga aaaaactaaa aatataaaga taaaaatccc
    24901 ccatactaac acgataaaac aaacttccct taatcaaagt agcttctttt ataatatttt
    24961 ttctaagctt taaaaataaa aagaattccc aaaaaagtgt taaaaaaata gaaattaaaa
    25021 aaaataaaga aaaagcactc ctttgccaag ttagcaaaaa gccaaaaagg cttaaaagcg
    25081 ttaaaatata agaactattc tttaacaagc tcattaaaag cactttcatc tatacatttt
    25141 acttcaagct ctttagcctt actaagctta gaacctgcct cttctccaaa aagcacatag
    25201 tcagtctttt tagaaaccga gccgcttacc ttacccccaa gcttttctat caaagcctta
    25261 aactcatctc ttgggcgtga aagagtgcct gtaatcacaa aagttttacc aaaaatcaca
    25321 ccatcgcttt tgatttcaag tttttctatt ttcaaattta aaagcttgta aaactcatca
    25381 attcttgtgc gattaacacg cgtaaattcg caaagactta aagccatttg ctctccaaaa
    25441 ccttctaaat tggcataagc ttcaaagctt tgcttgtacc actctttacc aaaacttaaa
    25501 cttaattttt tagccgcaac ctcgccaata tgctctattc ctaaagctgt gataaaacga
    25561 aaaagctcac attctcttgc ttgttctatg gcatttaaaa gattgttaat tttcttttct
    25621 ttaaagcctt ccaaaccttc aaaatcatta aattttaaat gaaaaatact ctcaagcgta
    25681 gtgatttttt tgtgcttgta taaaagttct actatatttt ctcccagtcc gtcgatatta
    25741 agacattttt tagaaacaaa atgaatgata gaatttacaa gtctatcttc acaatctata
    25801 ttttgacatt ttattaaagt tccttcatcc aaaagctcac tttggcaagt aggacaaagc
    25861 ttagggcgtg aaatttccat ctctaaacct tctctacgct ctttaaaaac cttagtgatt
    25921 ttagggataa catcgccact tcttatcacg cttacaaaat cattgatttt aacatcaagt
    25981 cttgcaattt catcaaaatt atgaagggtg gctgatttta ctacaacccc atctaaattt
    26041 acaggttcta aaactgccac aggagtgatc actccacttc ttcctacttg taaatttacc
    26101 cctattaaac gcgtggtttt ttcaagcgca ggaaatttaa aagctgccat aaattttgga
    26161 aattttaccg tatagcctaa ttcttcacaa agtgcaagat catcaactct taccaccatt
    26221 ccatccatca tcataggttt tttttctctt agagctaaaa gctcatcata agcttttaaa
    26281 acttcgtcta aattagcgca aagtcttaca aaatcatcct ttaaaaaacc aagctctctg
    26341 ataaattgca tcacctcgct gtgtttggtg aaatttaagg tattttcccc tactccccaa
    26401 ggataaaatt tcaaatttct ttctttagtg atgcttgtat caagctgcct taaactccca
    26461 cttgcagcat tgcgtggatt ggcaaataaa ctttgattta aaagggctct tttttcgttg
    26521 attttctcaa aatcatcttt taaaatcacc acttctccac gaatttctat cctttcttta
    26581 taggctatat ttttaggtat attttctatc tcaaaaacat taagcgttat atcctcaccc
    26641 acttcgccat cgcccctagt ggcgccgctt actaatttac cattttcata aagcaaattt
    26701 aaactcgctc catcaaattt aggctctata aaaaagtttt tttcacattt tgcgcgtttt
    26761 gcccaagctc taagctcact ctcatcaaac acatcttcca tcgaccacat acgctttaaa
    26821 tgagctattt ttttaaactc actttgtata gtaggagcta ttttttgcgt tggagagtct
    26881 tttgaaattt catctttatt ttgttcttca aaaactctta attctctgat taaagcatcg
    26941 tattcttcat cgctagccaa gggttcatct ttttcataat atgccctcat ccacaaatta
    27001 gctaaagcaa ctttttctaa atactcttct tttttcatct aaactcctat attatccatt
    27061 gcctgcgcta aagcaaaaag ttgtttatgc tcatataaat catgcactct tataatacta
    27121 gcaccatttt caaaagcctt taaatgcaaa tataaagttc ccgctaaacg atctttaatc
    27181 tcgctttgaa aatacgcatt aatcacactt ttacgactcg cacctataag taaaggttta
    27241 ttaaattgca aaaaatgttc taagtgtttg attaaaatca tattatgccc cgcactcttt
    27301 ccaaaaccaa tacctacatc taaaatactt tcttttactc caaaactttc taaaagctca
    27361 agtttttctt taaaaaacaa agtcatctca tcaagcaaat cttcataaaa aggattatct
    27421 tgcatgttat ttggattgtt ttgcatgtgc attaagcaat attttgcccc atatttactt
    27481 gcaagtttgg ctagattaag atttcttaaa cttgtaatat cattaatgag tttaaaaccc
    27541 ttatttaaag catattctag acaatattca tcaaaactat ctaaactaaa aattgcttgt
    27601 tcgtaataat ttttctcata aattaagtca agtacttttt tcagtctttt aaattcctct
    27661 tccttgccac aatactcact cccaggtctt gagcttaccg cacctatatc gatatattca
    27721 ggctttaaag caagaaagtc attaagcctt ttttcaaagt cttcttcact cacacgactt
    27781 tttgcattaa aactgtcttc attgacatta atcactgcca taagctcggc ttttttcggt
    27841 tttaaaaaat ctttttgcaa aaaaagagcc aaatttttaa gtccaaaatc ttgaagtttt
    27901 tctttgacaa caagcttttg aatttgctct ttacttgcca ttaaaagcgc atttgaatga
    27961 gtgatttttg cagtaattac ttctttatga gtaataagtt cagctcctac tcttaaagca
    28021 tcttgtttta aaatatttgc cgcaggagta gaaatatctt tgataaaaat aaaatgaatt
    28081 tttgtttttt cactcatgat cttttgtccc attttatgag ggtttatgaa agaacaaagc
    28141 aaattaaaat cggtgtttgg attgatttta aaaaatttca ttttatttct ttgtatagta
    28201 atttaataaa agagtagcta aaagcacccc gcttttagaa tttaattttg caagctcata
    28261 actttcataa aaaaactcta attcttcagc gttaaaatct ttatatttca cacattcttt
    28321 agcaagcaat gcgatttgat ccataagttc atttttatcc aaattttcat ttttttgcaa
    28381 aaaatcaaaa agcattctta aatccattct tttaagatct aaatcaagtt ttttaacgtc
    28441 cttttcaact tttctttttt cacaaataag acgtgatttt atagtaggta aaagtaaatt
    28501 tttagaaggt atcacaataa gaaatttaat attttttgga ggttcttcaa ggagtttaag
    28561 taaaaaattt tgcgcttcta tcctataaga atccgccatt aaaacaataa ttttttcttc
    28621 agtttctgcg atatagcttt ctttttcaac cgctcttgca tcatcaagta aaaattcatt
    28681 ttgtggtata aaaaatctta attttttaat accaaaatta ttaatcattt cttctttaat
    28741 acctaaaaaa tcttcgctga taataatctt actaataaac aaaatattta tcctaattgc
    28801 accttggaaa ataatattgc atccaaactt acatcaaaaa gttgatataa actaataagc
    28861 ttgatatcca agtctttatc tttagaattt aaataaaaac tatcttgtaa ctgctcatca
    28921 aaaagccaca ataaactatc atctcttgat ttagcgatta aagatttatt atcagaagca
    28981 cttcctatat aaaaatacac ataaccatta ggaaaagaaa tgtcaagcaa gtcattaagt
    29041 aaagctatat cttctgaact ttgtactttc ttcttgcata aagaatttaa cgacacaaaa
    29101 ggaagcatag gacgagcggc ttttgaattt atatttttta aaaaatactc ttcataccaa
    29161 gatctttgtt catcgcacat taatacaaaa gtgcgtcctt ctaaaagata tttaagtctt
    29221 gcagccatca aaggagccca ttctaaacga cgcgactcca accatgccat aaaagctccg
    29281 ccattgcgaa tattttcaag agtaaaactt aaaaaatcac tcatttattt atcaagtccg
    29341 tagcactcat gtagtgctct aactgcaagt tctccgtatt tttcatgaac tatcattgaa
    29401 attttaattt cactagtaga aatcataccg atattaatcc cctcatcagc taaagcttta
    29461 aaagctttac ttgccactcc tgaatgtgat ttcatgccta cgccgactat agaaactttt
    29521 actacagcac tatcactttc tatagttgtt tttgagctta aaattttttg catagcattt
    29581 ttggctaatt caagttcatt ttgaggaact gtaaaaccca aatttgtagc gccatcaact
    29641 ccaacatttt gtataatcat atctacatta atattttcat ttgccaaaac agaaaaaatt
    29701 tcagctgcga ttccaggctt atcttctaca tttcttaaag tcactcttgc ttgattttta
    29761 tccaaagcaa taccacttac taaagcttgt tccattccat cttcctttgt tatcattgtt
    29821 ccttcgttat tgttaaaact acttctagtt actaagttaa catttaattt ttttgcaagc
    29881 tctacagagc gattttgcaa aacttttgca cccaaacttg caagttcaag catttcttca
    29941 taagaaattt tatccaattt ctttgccttt ggttcaattc ttggatctgt tgtataaacc
    30001 ccatcaacat cggtataaat ttcacacaaa tccgcattta aggcacctgc taccgccaca
    30061 gcacttaagt cgcttccacc acgccctaag gtagttacat taccttcctc atctacacct
    30121 tgaaaacctg ctataacgac tattttacca ttttgaagtt ctgattttat cgcttttgta
    30181 tcaatatgat gaattcttgc ctttgtaaaa acactatctg taataattcc cgcttttctc
    30241 ccagaaaatg atatagcagg ataacccttt tcatttaaag cgatagaaag taaagcgctt
    30301 gttacacgct ctccactgct taaaagcata tccatatctt taccattagg agttttacta
    30361 aaatattcag cttgctcgat aagagtattt gtcaccccac tcattgcaga tactacaaca
    30421 acaagttgat caccctgttg cacactttgg ataaccctat tggctactgc ttcgatacgc
    30481 tcaagtgttc caacgcttgt tccaccatat ttttgaacta taagcatttt agatataacc
    30541 tttctcttca aaatatttga tcactttaac ataaatattt tttttgaaat gattaatcat
    30601 ttcaaaaatt tgtttaacac tcacaaattg ataatcatca aattcaggat gcttggtatt
    30661 gatattgatt gtagcaccgt gctttaaacg cactaaaaaa tatttttgaa tctgcccatc
    30721 ataaggatac atttttttaa caattttact cggaaaatca taactcaacc attctggata
    30781 ctcggcaatg atttcaacct catcagtgcc tatttcttct tttagttctc taaataaagc
    30841 gtttttgaca ctttcacctt tatcaatacc tccttgtgga aattgccaaa tattatccat
    30901 atcacttctt ctagctataa aaatcttaca ctcaaaagga taagaacttg ataaaacaat
    30961 agctgcaaca tttggtctat aatttttctc gttttccaca atattgttcc ttaaatctca
    31021 aggatataat tttaacctaa atcaaatcaa
//
LOCUS       DBBXPZ010000009        30789 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.009, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000009 DBBXPZ010000000
VERSION     DBBXPZ010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 30789)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30789)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30789
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.009"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            52..1578
                     /locus_tag="ACJFD7_000309"
     CDS             52..1578
                     /locus_tag="ACJFD7_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HGG0859158.1"
                     /translation="MQKDNLIAFVIFIISTIAFVIWGFGYISQHQLILFILASIFGIF
                     MAFNIGGNDVANSFGTSVGAKTVTIKQALIIAAVFELSGAIFAGAEVTKTIRSGIVIF
                     PNSLDPMLFVIIMLAALLSSGVWIFIATKKGLPVSTTHSIVGGIVGASIMMGLLKFDG
                     IQTLSMVKWSEILRIAISWVASPLLGGIVAYIIYSYIDKKILKPSEKLNDDLKNIKKE
                     RKKFKEEYFLNLKTKSQEEQIKELSAIALDEEEQENNFYRNKMKEFKDQEKDIDIYSI
                     LKTHMPIIACIAAAIISAMFLFKGLNNVSTLDILQNFWIIGIIGTISYVVTFAIVKIV
                     KKTELNKTTDRIFSWFQIFTASSFAFSHGANDIANAIGPFAAILDVLKNGTINATSPV
                     PFAALAMFGVALVVGLWFLGKEVITTVGSKLATIRPTTGFSAELGASIVILLATQFGI
                     PVSSTHILIGAILGIGVYNKNANWIMMKPIGLAWIITLPAAGIMAALVFLGFKLSLGI
                     "
     gene            complement(1586..2764)
                     /locus_tag="ACJFD7_000310"
     CDS             complement(1586..2764)
                     /locus_tag="ACJFD7_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HGG0859159.1"
                     /translation="MIIKNAKIYGDSLQDIEIKEGKITNIGSNLQGEEILDAKGMTLL
                     PSFVDLCVSLKNDKFSLANLELLENECLKGGISSIVLRDCMDFDEESFALFLQNLAQR
                     KMQIFSSVRVKDANGKLKNLATLLNKGACALELDSSLDANTLKVSSQYAFMKDSPIFV
                     RCYDKDFDDNGVMNDCEMSFELGLIGMSKIAETSQIAKMKELAKFYKNKVIFDLLSLK
                     DSLVLLDEKDLKLVSIHHLIKDDSACEDFNTAAKLMPPLRSKEDVLALREALKEGKIS
                     FLTSLHSAKSISLKDLAFDEAAFGIHSVCEFISLCYTFLIKEGFLNWQELCQFTSKNP
                     SEFLGLNSGVIEVGKEANLVLFDENEEIFAPKSSLYSEDKLFGKIKIHIIKGKNILEK
                     "
     gene            complement(2774..3670)
                     /locus_tag="ACJFD7_000311"
     CDS             complement(2774..3670)
                     /locus_tag="ACJFD7_000311"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HGG0859160.1"
                     /translation="MMRIAVIGAGKWGSALHLALKENHNCFISSLHQRDLEDFVSIKE
                     ALECEYLVFALSSQGMRAWLKENFINKGQKILIASKGIEDQSCQFLDEIFLDFVPKEN
                     FCVLSGPSFAAEVMQKLPTALMISGINQELCKKFASFFPDFIKTYIDNDVRGAEICGA
                     YKNVLAIASGISDGLKLGNNARAALISRGLIEMHRFGKFFGAKEETFLGLSGAGDLFL
                     TATSVLSRNYRVGLKLAQNQKLDSILVELNEVAEGVKTAYAIEKLAKMKGIYTPIVNE
                     VVAIFKGKSVQEATQSLLKQND"
     gene            complement(3667..5085)
                     /gene="gatB"
                     /locus_tag="ACJFD7_000312"
     CDS             complement(3667..5085)
                     /gene="gatB"
                     /locus_tag="ACJFD7_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HGG0859161.1"
                     /translation="MFEVVIGLEVHTQLNTKTKIFCSCATSFGEAPNTNVCPTCLALP
                     GALPVLNEEAVKKAIAFGKAVNATINKKSVFNRKNYFYPDLPKAYQISQFDIPIVEKG
                     ELFINVKGENKRIGITRAHLEEDAGKNIHENNFSKVDLNRAGTPLLEIVSEPELRSSD
                     EAVAYLKKLHSIIRFLDISDANMQEGSFRCDANVSIRPKGDTKLYTRVEIKNLNSFRF
                     IQKAIEYEVKRQSEAWEDGTYEQEVVQETRLFDTTNLVTRSMRGKEEAAEYRYFPDPD
                     LLPVLLKDEFLDIKIPELPDEKKVRFIDKLGIKESDAEVLISSLEMSRFFESLISQNL
                     NPKLCVNWLNTELMGLLKGELTIENSPVDAQKLGVLIKRIEDGTISAKAAKDVLAFIF
                     ENTSVEIDEAIEKLGLKQVSDDSAIEAVIEQILNANADKVAEYKSGKDKLFGFFVGQT
                     MKEGKGAFNPAKVNEILKTKLG"
     gene            5200..5694
                     /gene="luxS"
                     /locus_tag="ACJFD7_000313"
     CDS             5200..5694
                     /gene="luxS"
                     /locus_tag="ACJFD7_000313"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HGG0859162.1"
                     /translation="MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPN
                     KDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISPMGCRTGFYMSLIGTPDEKSVAK
                     AWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
                     LENA"
     gene            6005..6997
                     /locus_tag="ACJFD7_000314"
     CDS             6005..6997
                     /locus_tag="ACJFD7_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopenicillin N synthase family dioxygenase"
                     /protein_id="HGG0859163.1"
                     /translation="MNLPILDLQAYEKDKSTFLKNLREIASKIGFFYLINTSIDKNLN
                     EKLFKLGKEFFNLSRSSKELISMVHSPQFRGYTSEGFEYTAGTKDYREQLDIGTERDA
                     LNWNLNSPLWQRLEGPNLWPSEIPELKKTFLTWHKQTKKACLKLLKTFAQALDLPSNA
                     FDKLYGENSYEHCKIIHYPKSSKNITQGVGSHKDGGLITFVFQEKQSGLEAFIDGKWL
                     SIPPLENSVVVNIGEFLELATNGYLKATIHRVNLSPKERFSIAYFLGVQLDKDIPIFK
                     LNPELAKESKGVDTDPKNPLLRNVASNYFKRMIRSHPDVASIYHSDLIEKFSFA"
     gene            7008..7778
                     /locus_tag="ACJFD7_000315"
     CDS             7008..7778
                     /locus_tag="ACJFD7_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HGG0859164.1"
                     /translation="MTLFTKAFCVATLFTGFAWANEELKVGSSITPHADILRFIKSAL
                     QKQGYDLKIYEFNDGVIPNVMVENGELDANYFQHEPYLKEFNQRQGTHLVKVASIHIE
                     PMAVYSKKYKEFNPEEGQSISIPNNPTNESRALRIVASKGLIEVKDNELITPLDITKN
                     PKKLKFVELKDAQLTRSLNDVDYSLINSNFAILAGLNPVKDGLYTESKYSEYGNIIAV
                     KEGNENLPKIKALVKALQSDEVKKFIEEKYQGALIPTF"
     gene            7790..10054
                     /gene="metE"
                     /locus_tag="ACJFD7_000316"
     CDS             7790..10054
                     /gene="metE"
                     /locus_tag="ACJFD7_000316"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003871 -
                     5-methyltetrahydropteroyltriglutamate-homocysteine
                     S-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HGG0859165.1"
                     /translation="MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIR
                     HWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYKNLNLDALDEYFAQSRGYQG
                     ENGDVTALAMKKWFNTNYHYLVPECDNADIIALTGDKIFKEYLEAKELGIESKPVLIG
                     IFTLFKLIAFKDEKTQKLAKEKLLNAYIELFDKLNELKVTWLELDEPYLVYDLSKEDI
                     ALFEEFYQELLNHKKDLKILLQSYFGDLRDIYPKLLESKFDALGLDFIEGKQSLALVQ
                     KYGFAKDKILFAGLINGKNIYTNDYAKSLKLIKELQKYTQNIILNTSCSLLHVPYSTE
                     FESKLDSNYLKLFSFAKEKLQELKDLKEILNSSEENPLFRANQELFKNIPERLDEKVK
                     ARLKALKKEDFTRTPSFKERALIQKEFLKLPLLPTTTIGSFPQSADVRSNRLAFKQEK
                     ISAQNYTEFNQQKIKECIQIQEEIGLDVLVHGEFERNDMVEYFGENLKGFLFTQNGWV
                     QSYGTRCVKPPVIWGDVSRTKPITLAWSKFAQSLSQKIVKGMLTGPVTILNWSFPRED
                     ISLKESTEQIALAIRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLDWAIPA
                     FNLVHSGVKAKTQIHTHMCYSEFSDILKEIDAMDADVISFEASRSNLSLLDTLKAIHF
                     KTEVGPGVYDIHSPRVPSIEELSLTIEKILNKLPKEQIWINPDCGLKTRAYEEVIASL
                     KNLVTATQKIREQL"
     gene            10064..10912
                     /gene="metF"
                     /locus_tag="ACJFD7_000317"
     CDS             10064..10912
                     /gene="metF"
                     /locus_tag="ACJFD7_000317"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HGG0859166.1"
                     /translation="MCSFSFEVFPPRKDENIKNLHAILDDLGQLSPNFISVTFGAGGS
                     INSQNTLEVASLIQEEYQIPSIVHLPCIHSSKEKITQILQKCKEKNLNQILALRGDIC
                     ENLEKSKDFSYASDLISFIKKQEYFEIYAACYPEKHNESKNFIEDIHHLKTKVNAGTD
                     KLITQLFYDNEDFYTFKQNCALAGIDIPIYAGIMPITNKRQVLKISQLCGAKIPPKFV
                     KILEKYENNALALEDAGIAYACDQIVDLITSGVDGIHLYTMNKSKAAIKIYEAVKHLL
                     KEELHV"
     gene            complement(10934..11125)
                     /locus_tag="ACJFD7_000318"
     CDS             complement(10934..11125)
                     /locus_tag="ACJFD7_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859167.1"
                     /translation="MIYILEFFKGASLALMLFGALFFFFKYNSFFYLCLGIIPGLLLS
                     LIFVLLIENHKLKNENKLR"
     gene            complement(11122..11802)
                     /locus_tag="ACJFD7_000319"
     CDS             complement(11122..11802)
                     /locus_tag="ACJFD7_000319"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HGG0859168.1"
                     /translation="MKDLFLFSSLLDTSHTFSYFFHIGLVALIAVIVAMMATRSMQLV
                     PRGMQNLGEAFLEGVLSMGRDTMGSEKGARKYLPLVATLGIIVFFSNIIGIIPGFHAP
                     TASLNLTLSLAIIVFVYYHFEGIRAQGFVKYFAHFMGPIKLLAPLMFPIEIVSHLSRV
                     VSLSFRLFGNIKGDDLFLMVILALVPYIAPLPAYVLLTFMAFLQAFIFMILTYVYLAG
                     ATVVEEGH"
     gene            complement(11871..13211)
                     /gene="radA"
                     /locus_tag="ACJFD7_000320"
     CDS             complement(11871..13211)
                     /gene="radA"
                     /locus_tag="ACJFD7_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HGG0859169.1"
                     /translation="MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVL
                     KELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDLVLGGGLVEGSLVLIGGSPGVGK
                     STLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
                     LHKKDYSILIIDSIQTLYSNKVTSAAGSITQVREITFELMRVSKAYNISTFIIGHITK
                     EGAIAGPRVLEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAK
                     DLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKNRLDMLL
                     ALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGEL
                     SLNGEIREVFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM"
     gene            complement(13211..14077)
                     /gene="ftsY"
                     /locus_tag="ACJFD7_000321"
     CDS             complement(13211..14077)
                     /gene="ftsY"
                     /locus_tag="ACJFD7_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HGG0859170.1"
                     /translation="MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEI
                     VEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQEKPFVELILGVNGAGKTTSIAK
                     LAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
                     AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGI
                     LQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNAS
                     AYLDTLLDPIFE"
     gene            complement(14077..14634)
                     /locus_tag="ACJFD7_000322"
     CDS             complement(14077..14634)
                     /locus_tag="ACJFD7_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HGG0859171.1"
                     /translation="MKIKKILLLVAISCLFVACSNDKEKQQNDVNLSTEASINQSDDM
                     NFKLNLIDGGSISVKKENVVLNFNDEGKAILFVFFTTWCTPCIAEIPHLNKLQEKYNN
                     DFNIVGVLLEDKSNDEIQKFIEQHKISYKVANGENNYLLAKALGGVNGIPTMFLYNKH
                     SKLINQYLGLIPEEMLEIDIQKAIL"
     gene            14717..15343
                     /locus_tag="ACJFD7_000323"
     CDS             14717..15343
                     /locus_tag="ACJFD7_000323"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030272 - 5-formyltetrahydrofolate
                     cyclo-ligase activity [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HGG0859172.1"
                     /translation="MEKTDFRALQKIRLFKHSKLNFKQDYKIFKECLKIIKLFKAKNI
                     LIFIPLHYEPNLIKFRHILNKNYKLFVPFMQDKSLKIVKLRLPFIKKRFRVLEPIDSF
                     FKAKIDLAIVPVIGVDKNLKRIGHGQGFYDRFFENLNYKPHIIFVQSIDALSQNNLTQ
                     KHDISGKLYINPYKKYYKKERKNDRITYRTYSRYSRTRYRIFSCKKNQ"
     gene            15264..16817
                     /gene="rny"
                     /locus_tag="ACJFD7_000324"
     CDS             15264..16817
                     /gene="rny"
                     /locus_tag="ACJFD7_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HGG0859173.1"
                     /translation="MIESLIALIAAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAI
                     EYEAELILKDAKNSILNAELEVKKKYEEKTHKIQKDFNQKFDDLSKKEQKLQQEEEKL
                     KEDKEYLCKSQKYIQNLQSDVDKLKNKYQEKLDDVLKILEHSTGLTQNEAKEIILKKV
                     EENSREQIAHIVRKYEEEAKNEAKRKANFIIAQATSRFAGEFAAERLINVINIKNDEL
                     KGRIIGKEGRNVKTLEMVLGVDIIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRI
                     QPARIEEIHEKVCKEFDSAILEEGETIVMDLGLNKIHPEIVKLIGKLKYRASYGQNAL
                     AHSLEVAHLAGIIAAECGGDENLARRAGILHDIGKALTHDFEGSHVDLGAELCKRYKE
                     HPVVINAIYAHHGHEEATSIESAAVCAADTLSAARPGARREVLEAFLKRVSELEDIAK
                     SKEGIKNAYAINAGREIRVIANAQLVNDDESVLLAKEIAAEIQEKMQYPGEIKVNVIR
                     ELRAVEYAK"
     gene            16826..17383
                     /locus_tag="ACJFD7_000325"
     CDS             16826..17383
                     /locus_tag="ACJFD7_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HGG0859174.1"
                     /translation="MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSF
                     CIALAFIANTIGSTLLFILGKYYKKDIMPYFKKHRRKIALAMIKTKQHGIILLVTQKF
                     IYGLKTFIPIAAGMAKYNFIKFFIINTLASLAWAIVLGFAAYTFGYVIEAIFDKLSLY
                     PYAAPLFLLFLAGIIWLYLSKFSKK"
     gene            17383..18642
                     /locus_tag="ACJFD7_000326"
     CDS             17383..18642
                     /locus_tag="ACJFD7_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0030420 - establishment of competence for
                     transformation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HGG0859175.1"
                     /translation="MSLWNSFSYSFKEFHYLFFSVVVIFIFNILLEYNNFLNFKNQKH
                     YLIDNALLTHQYIKYNKKNKKYWVLKLQTENFTFYTTSFKDLNLSKNQFLSLRIITHN
                     INFKDYLSKSFYAPSYDFEKLKEKEYNPIISYFLNQHTNEKIKEFYGALFFALPISLE
                     LRNDVNYYGIAHLIAISGYHIGLLFSLIFFILAPIYSFFQKRYFPYRNLRLDLSILIF
                     ALLLAYACLIGFVPSFVRSLIMAFWVFYLLCKNIKIINFVTLFCSILLCISLYPRLLF
                     SIGFLFSILGVFYIFLYMHHFANKFNNLINIILLNIWTFFAMVLPVLYFFPLISYQQI
                     LGIILSGIFVIFYPLVLFLHLINYGDLLNFILDEFFKFKIYGTNIHIPFWIFISYLIA
                     SLISVRFKYLAFLCIFANFIPFIMIVI"
     gene            complement(18586..19392)
                     /locus_tag="ACJFD7_000327"
     CDS             complement(18586..19392)
                     /locus_tag="ACJFD7_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HGG0859176.1"
                     /translation="MKNFFTILLNLRDKEILNYAAALSFYTVLSLIPILFVCFSVFTQ
                     ISSFKAYYEKAKQVIFAFLIPTQQDVVATYIDTFLKNSVNLGIVGLIAMAFTSLAFFS
                     GYDFVINRITKNEPKGLWQSISSYWTLLTLVPLGLGLSFYISGFIQQTLDDYKIGFNF
                     FEILPFVIIWGLFFISYSSSVHKGTLKSLALVSFGAGTIWYIGKNLFVYYVVYNKTYA
                     SVYGSFSTILFFFIWIYISWIIYLFGLKLYYFLNHNHNEGNKIRKNTKKS"
     gene            complement(19396..20778)
                     /locus_tag="ACJFD7_000328"
     CDS             complement(19396..20778)
                     /locus_tag="ACJFD7_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HGG0859177.1"
                     /translation="MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLF
                     PRNEEDIARILKFCNENNIIVIPRGSGSGFTGGALAVNGGVVLAFEKHMNKILEIDLE
                     NLVAVVQPGVINIHLQKEVAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
                     DYVMALRAVLPSGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLRLIPLPKF
                     KKTAFAIFPSVKSAMNAVYKSLASGVSPVSMEFLDNLSIRAVESKFNKGLPIEAGAIL
                     IADVDGNVKEAIDEDLRNLEYYFLEAGASEFKIAKDEQETADIWFARRNCSQSIAMYG
                     TLKLNEDITVPRSKLPTLLEGIDEISKKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQ
                     VKKGYEAVEEIFKLTVKLGGTLSGEHGIGLSKASFMNLAFSEAEMNLMRNIKKAFDPN
                     NILNPFKMGL"
     gene            complement(20781..21506)
                     /locus_tag="ACJFD7_000329"
     CDS             complement(20781..21506)
                     /locus_tag="ACJFD7_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasminogen-binding N-terminal domain-containing
                     protein"
                     /protein_id="HGG0859178.1"
                     /translation="MFKTIVCFLALNLSLFAVGFDLKPIKSELVKVDDIYGYIKDSDD
                     IKLYSSGVVVQHFSNSQSIIARASVIDKKNGLAKLEFSVFSALKQDALPLPNVLPKVG
                     DEVVLNFLYDRGLVIAPDEQTYNELVREFPQIYFTHIDIFGAQLIRTATLSPKRSDLR
                     QFCDDNAVGILVVALENHAEVVDCQDFNKLYEVPISKPTSVQVPFYSRIGGYKSNFFD
                     FNSQEIGNYYRYYDALINLPKVQ"
     gene            21628..22788
                     /locus_tag="ACJFD7_000330"
     CDS             21628..22788
                     /locus_tag="ACJFD7_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HGG0859179.1"
                     /translation="MKKLLLLFIFVVQSFAALSVEELTWDNGDTLLKFLQRNSIPMSL
                     YYGLDREDQELASDIAYKIKYQVLKDENNNIEQVLIPISDDLQIHIYKDKDGQYTLAF
                     TPVSYQKEDRILHLTIKSSAYQDVYEESGSSTLARAMVRAFRGSINFRNIQKGDEVTL
                     YYEQKRRMGKLWGDINIKMAMVEINKSAREVFSYNDIFYDRDGKELESFLLTKPVNYT
                     RISSPFTTARYHPILKRYRAHLGIDYAAPTGTPVKSAGKGVVTFIGTKGGYGNVIQIK
                     HDSGYMTLYAHLSRFAKIKNGQKVNQGQVIAYVGSTGMSTGPHLHFGVYLNNKAINPA
                     SVVKIAKSELSGKAKENFKHIIAGYEQVVKEALASNQPNPPKEEDFENYIEF"
     gene            complement(22785..22988)
                     /locus_tag="ACJFD7_000331"
     CDS             complement(22785..22988)
                     /locus_tag="ACJFD7_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859180.1"
                     /translation="MYERKDLRVLKIIQKAREFGDGDLLNEALVKQLIDADFCEINEK
                     EKEELATLLNSLINAKDKALLSN"
     gene            complement(22990..23670)
                     /locus_tag="ACJFD7_000332"
     CDS             complement(22990..23670)
                     /locus_tag="ACJFD7_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="laccase domain-containing protein"
                     /protein_id="HGG0859181.1"
                     /translation="MGRSRKNFLSLLENDKVVIFCAFDKDYNVFRAKVYSENLFYHLG
                     FKDIKKCVFMDQIHSHKVIIYEKNLKNLSCDGLISKEKNIALCVLSADCLPLILYHES
                     GIIAALHSGRKGSFENILKECVDQITMQNSHLDKNKFHLFILPGICAKNYEIDGEILE
                     FAKKEFKEFVQDDKLDLKALVKFQAQNLGIENIKDCGICSFDDESFFSYRRDKTPKRF
                     VSVVYLKD"
     gene            complement(23634..24245)
                     /locus_tag="ACJFD7_000333"
     CDS             complement(23634..24245)
                     /locus_tag="ACJFD7_000333"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HGG0859182.1"
                     /translation="MFNGLIREIAKVQSYQNNTLSLKAKYRPNLGDSIAVNGACLSVT
                     KLYEGGFEVELSRESRTHIAIENLKDKVHIEPALRYGDRIDGHLMQGHIDFIGTLEKI
                     QKDENGVDFYISLPKEAMKFMAEKGSIAVDGVSLTINEILKNGIRLTIIPITFKETLF
                     KDYQVGRKINIESDLLARYIYAQLQGKNKGLSWEEVERISYLY"
     gene            complement(24254..26794)
                     /locus_tag="ACJFD7_000334"
     CDS             complement(24254..26794)
                     /locus_tag="ACJFD7_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859183.1"
                     /translation="MKKIFYGVIAFVVVLLIAIYTILFTSFGNNIVANIAQKKIKESA
                     GLDVNITHFNLRFSSLELQANIANMADFNLKGALSPFKLGFDLDYLISLNQNYAKNLG
                     LNLNQNLSFGGKIQGKASDFTLDGKGYLLGSNVLLNARMYNYSPIALNLDAQNLKIEE
                     ILHLLSYPSYAKGFLNAQAKISAQNLKPDGNIIIKLDTSYINYEAIKKDFSLDLPLNS
                     NPKAEILANIKEDKIYAVSKIYNDYLNLQTQKTLYDISKNALSTDFNLSIPSLVKLEK
                     LTKTRLNGSLDVIGQTSVVNNALSSLNAQVIGLGGEVKASLKNNKIFADINEASLEKL
                     LALAGYGALVSGNLNAKLLNADLDFSNFDLEAKINNAKINTNELKKIAKIELPNAIFS
                     FDAKANAKNSNISYNALLASNLLNIKKLQGTYNLKNSELNTDLNAFIDDLSQFSAIAG
                     QKLQGKADLTAKAHIIGTQVQNLNANANLADGVIKADSNGKKLDLNIDKLDLSKLFVI
                     TGMPNYASGIVNAKVNLDNIDFNNLNGKANLEAKGILNAATLSKILNKNFPNNTSYDL
                     NTKINFKNNIAQFDSVLNSSLADLTKLQGSFDISKMLLNSDFNLKINDFSKLGFLLDR
                     KLKGKAEFNGKVGFDKSLNFVVNSPNLFEGRLQSTLKDNLLLADLNGVDLSSLAQGLD
                     FMDVYQGKADVKANYNLLSEEGEVNLDMKEGKLKPNLITNALKILTLKDITNDVYRTA
                     NAKALIKKENIKLDLNMQADRSYILVQSGALNSKSGALNLPFDIKLDRANFKGSITGT
                     TENPKVNLNAGSVLNSIKNVVGGGVSDGAKSTGDKVDKAVNKLLNKIF"
     gene            26956..27216
                     /gene="groES"
                     /locus_tag="ACJFD7_000335"
     CDS             26956..27216
                     /gene="groES"
                     /locus_tag="ACJFD7_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HGG0859184.1"
                     /translation="MNFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVS
                     KEITDIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK"
     gene            27237..28874
                     /gene="groL"
                     /locus_tag="ACJFD7_000336"
     CDS             27237..28874
                     /gene="groL"
                     /locus_tag="ACJFD7_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA];
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HGG0859185.1"
                     /translation="MAKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFG
                     APSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEG
                     LRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNL
                     IADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNAEKMTVELSSPY
                     ILLFDKKITNLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVK
                     APGFGDRRKAMLEDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNG
                     AGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKK
                     DRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQGDEAIGAAIVERALRAPLRQ
                     IAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSV
                     ASMLLTTEATISEIKEDKPTMPDMSGMGGMGGMGGMM"
     gene            complement(28917..30107)
                     /gene="dccS"
                     /locus_tag="ACJFD7_000337"
     CDS             complement(28917..30107)
                     /gene="dccS"
                     /locus_tag="ACJFD7_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DccS"
                     /protein_id="HGG0859186.1"
                     /translation="MAKKVIRQILLIYLTTTGIFLTIFFALWYQKLYEELVVLKGATL
                     RENHRNIVISILNSRFTPIDISAKNIAQSTALKFAIFDVKKIVFSNIDFDLRKAKIEL
                     KGRGICDNKVFFLAPMSADHYFLRHASNEEVNTNDGLQILIQGEDVGKDLFWIRTKVF
                     GFAIMAFCILGLISYILVKIALKPLEDKISTLNRFIKDSTHELNTPLSVILMSIEQLE
                     HQNLGDNAKFTRIKLAAKSLSQVYSDLVFYNFPNTLETEKQKFDLRILLEERLEYFKV
                     FFEQKKITLKLDLNQANIFAPKSQISKLIDNLISNAIKYNKKGGVISIILKANFLSIA
                     DTGCGISKSNLNHIFDRYTRFNTDQGGFGIGLSLVKKVCDDNDIKIICESVENQGSVF
                     KLNW"
     gene            complement(30100..30765)
                     /gene="dccR"
                     /locus_tag="ACJFD7_000338"
     CDS             complement(30100..30765)
                     /gene="dccR"
                     /locus_tag="ACJFD7_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DccR"
                     /protein_id="HGG0859187.1"
                     /translation="MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYE
                     RYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIK
                     KPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
                     LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGY
                     CYG"
BASE COUNT        10970 a         5116 c         4325 g        10378 t
ORIGIN      
        1 tagcaaattt aaagtaaata agtgtataat taaaataaaa aagggttatt aatgcaaaaa
       61 gacaacctca tagcttttgt tatttttatt atcagtacta tcgcatttgt tatttgggga
      121 tttggttata tttcgcaaca tcaattaatt ctttttattc ttgcttctat atttggcatt
      181 tttatggcat ttaatatagg tggaaatgat gtagccaatt cttttggaac aagcgttggc
      241 gcaaaaacag taaccattaa acaagcttta attatagcag ctgtttttga gctaagcggg
      301 gcaatcttcg caggcgcaga agttactaag accatacgca gcggtattgt tatttttcca
      361 aattctttag atcctatgct ttttgttatc attatgcttg ctgcactttt aagctctggg
      421 gtttggattt ttattgcaac caagaaaggc ttacctgtat caaccacaca cagtatagtt
      481 ggtgggattg taggtgctag cattatgatg gggcttttaa aatttgatgg aatccaaaca
      541 ctctctatgg ttaaatggag tgaaatttta agaatagcta tttcttgggt agcttcgcct
      601 cttttagggg gtattgtagc ttatattatt tattcatata ttgataagaa aattttaaaa
      661 ccatcagaaa aactaaatga tgatttgaaa aatatcaaaa aagaaagaaa aaaattcaaa
      721 gaagaatatt ttttaaattt aaaaacaaaa tcccaagaag aacaaatcaa agaactttcc
      781 gctatagctt tggatgaaga agaacaagaa aataatttct atagaaataa aatgaaggaa
      841 tttaaggatc aagaaaaaga tatagatatt tactctattt taaaaactca tatgccaatc
      901 attgcttgta ttgctgctgc tatcatttcg gcaatgtttt tatttaaagg tttaaataat
      961 gttagcactt tggatatttt acaaaacttt tggattatcg gaattatagg aactataagt
     1021 tatgttgtaa catttgctat agtcaaaatc gttaaaaaaa cagaacttaa taaaactact
     1081 gatagaattt tctcatggtt tcaaatattt acagcctcta gttttgcatt ttcacacgga
     1141 gccaatgata tagccaatgc tataggtcct tttgcagcga ttttagatgt cttaaaaaac
     1201 ggcacaatta acgcgacttc tcctgtacct tttgctgctt tagctatgtt tggagttgct
     1261 ctagttgtag gactttggtt tttaggtaaa gaagtgatta ctacagtggg ttcaaaactt
     1321 gcaaccatac ggcctactac tggattttct gcagaacttg gtgcaagcat agttatactc
     1381 ttagctacac aatttggaat tcctgttagc tccacccata tactcatagg tgctatcttg
     1441 ggtataggag tgtataataa aaacgcaaat tggattatga tgaagcctat aggattggct
     1501 tggattatca ctttaccagc cgctggtatt atggcagcac ttgtattttt aggatttaaa
     1561 ctatctttag gaatttaagt aaagcttatt tttctaaaat attttttcct ttaattatat
     1621 gtatcttaat ctttccaaaa agtttatcct cagaataaag agaacttttt ggagcaaaaa
     1681 tttcttcatt ctcatcaaaa agaactagat tagcttcttt gccaacttct ataactccac
     1741 tatttaaacc taaaaattca ctaggatttt tacttgtaaa ttgacaaagc tcttgccaat
     1801 ttaaaaatcc ttctttgatt aaaaaagtat aacaaagact tataaattcg catacgctat
     1861 gaattccaaa agccgcttca tcaaaagcta aatcttttaa agaaattgat tttgcactat
     1921 gcagggaagt taaaaagcta atctttcctt cttttaaagc ctctcttaaa gccaaaacat
     1981 cttctttgct tcttaaaggt ggcataagtt tcgcagccgt attaaaatct tcacaagcac
     2041 tatcatcttt gataagatga tgaatgctta caagttttaa atccttttca tctaataata
     2101 ctaaagaatc tttcaaactt aaaagatcaa aaataacttt atttttataa aatttagcca
     2161 attctttcat tttagctatc tggctagttt cagcgatttt actcatgcct ataagcccta
     2221 gctcaaaact catttcacaa tcattcatca ctccattatc atcaaaatcc ttatcataac
     2281 aacgcacaaa aattggagag tctttcataa aagcatattg tgaacttact tttaaagtat
     2341 ttgcatctaa agagctgtca agctctaaag cacaagcacc tttatttaaa agagtggcta
     2401 aatttttaag cttgccgttt gcatccttaa cccgcacact tgaaaaaatt tgcatctttc
     2461 tttgagctaa attttgtaaa aataaagcaa aactttcttc atcaaaatcc atgcaatcac
     2521 gcaaaactat actagaaatt cctcctttta gacactcatt ttctaaaagc tctaaattag
     2581 ctaaagaaaa tttatcgttt tttaaactca cacacaaatc cacaaaagat ggaagtaaag
     2641 tcataccttt agcatctaaa atttcttcgc cttgtaaatt agaaccaata ttggtaattt
     2701 ttccttcttt aatctctata tcttgtaaag aatctccata aatttttgca tttttaatta
     2761 tcatgatttt tccttaatca ttttgcttta ataaactctg cgttgcttct tgcacgcttt
     2821 tacccttaaa aattgccact acttcattta caataggtgt ataaattcct ttcatttttg
     2881 ctagtttttc tatagcataa gcagttttta caccttctgc tacttcatta agttcgacta
     2941 aaatactatc taatttttga ttttgcgcca gttttaaacc tactctataa tttcttgata
     3001 aaacactcgt tgcagttaaa aacaaatccc ctgccccact taaccctaaa aaagtttctt
     3061 ctttagcacc aaaaaattta ccaaaacgat gcatttctat aagccctctt gaaatcagtg
     3121 ccgctcttgc attattgcca agttttaacc catcactaat cccacttgca attgctaaaa
     3181 cattcttata agcaccacaa atttcagcac cacgaacatc attatcaata taagttttaa
     3241 taaaatcagg gaaaaaactt gcaaattttt tacaaagctc ttgatttatc ccgctaatca
     3301 tcaaagcagt aggaagtttt tgcattactt cagcagcaaa agaaggaccg cttaaaacac
     3361 aaaaattttc ttttggtaca aaatctaaaa aaatttcatc taaaaattga caactttgat
     3421 cttctatgcc ttttgaagca attaaaattt tttgtccctt gttgatgaaa ttttctttaa
     3481 gccaagcacg catcccttga gaacttaaag caaaaacaag atattcgcat tctaaagctt
     3541 cttttatgct aacaaaatct tctaaatcac gctgatgcaa agaactgata aaacaattgt
     3601 gattttcttt taaggctaga tgtaaagcac tgccccattt tcccgcacca ataaccgcta
     3661 tacgcatcaa ccaagctttg tttttaaaat ttcatttact tttgcaggat taaaagctcc
     3721 tttgccttct ttcattgttt gacccacaaa aaatccaaaa agcttgtctt taccactttt
     3781 atactctgca accttatcgg catttgcatt taaaatttgt tcaatcaccg cttctatggc
     3841 tgagtcatca cttacttgtt taagtcctag cttttctata gcttcatcaa tttccacgct
     3901 agtattttca aatataaaag ccaaaacatc tttagccgct tttgcactga tagtgccatc
     3961 ttctatgcgt ttaattaaaa ctccaagctt ttgagcatct acaggagaat tttctatagt
     4021 caattctcct tttaaaagtc ccataagttc agtatttaac caatttacgc aaagtttagg
     4081 atttaaattt tgagaaataa gactttcaaa aaaacgactc atttctaaag aactgattaa
     4141 aacctctgca tcactttctt ttataccaag cttgtctata aagcgtactt tcttctcatc
     4201 aggaagctca gggattttaa tatccaaaaa ctcatctttt aataaaacag gcaataaatc
     4261 aggatcagga aaatagcgat attctgccgc ttcttctttg ccacgcatac ttcttgtaac
     4321 taaatttgtc gtatcaaaaa gtctagtttc ttgaactact tcttgttcgt aagttccatc
     4381 ttcccaagcc tcactttgtc tttttacctc atattctata gctttttgga taaaacgaaa
     4441 agaattaaga tttttaatct ctactctagt ataaagtttt gtatcgccct taggtcttat
     4501 actaacattt gcatcgcatc taaaacttcc ttcttgcata tttgcatctg aaatgtctaa
     4561 aaagcgtata atagaatgaa gttttttaag ataagctact gcctcatcgc tacttctaag
     4621 ctcaggctca ctgacaatct caagcaaagg agttcctgca cgatttaaat ctactttaga
     4681 aaaattattt tcatggatat ttttacctgc atcttcttct aagtgtgctc ttgtaatacc
     4741 tatgcgttta ttttcaccct ttacattgat aaaaagctca cccttttcta ctatagggat
     4801 atcaaattgt gaaatttgat aggctttagg taaatctgga taaaaataat tcttacgatt
     4861 aaaaacactt tttttattaa ttgttgcatt gacagctttt ccaaaagcta tagctttttt
     4921 tacagcctct tcatttaaaa caggcaaagc tcctggtaag gccaaacaag tgggacaaac
     4981 attggtattt ggagcttctc caaaagaagt tgcacatgag caaaagattt ttgtttttgt
     5041 atttaactga gtatgaactt caagacctat aactacttca aacataaaat ttccttgaat
     5101 ttttaaatgt tttattttat ctttttttct tttagaaagg ctttaaatat taactttaaa
     5161 tgctataatt cttagacaat ttatatttaa ggagttaaaa tgccattatt agacagcttt
     5221 aaagttgacc atactaaaat gccagctcct gctgtgcgtt tagctaaagt tatgaaaaca
     5281 cctaagggtg atgatattag cgtgtttgat ttgcgttttt gcataccaaa taaagacatt
     5341 atgagcgaaa aaggtactca taccttagaa catttatttg caggatttat gagagatcat
     5401 cttaattcaa attcagttga aattattgat atttcaccta tgggttgtcg cacgggtttt
     5461 tatatgagtt taattggaac accagatgaa aaaagtgttg caaaagcttg ggaagaagct
     5521 atgaaagatg ttttaagcgt aagcgatcaa agcaaaattc ctgaacttaa tatctatcaa
     5581 tgcggaactt gcgcaatgca ttctttagat gaagccaaac aaattgccca aaaggtttta
     5641 aatctaggta ttagcataat gaataacaaa gaattaaaac tcgagaatgc ttaaaaagaa
     5701 tctttatttt ttaaacgatt aagctttaat taatatattt ttatatatga ttttgaaatt
     5761 ttattatttt aaaaggagaa aaaatgaaac tgatgtgcga gatgtgtagt atctagtgcg
     5821 tcctttggct taacattatg tttccaaagg tccaaaaagt ggataaggag atataatgtg
     5881 taagaaagtc aaaaaagttt attttttcaa aatactcatt taaaatctta acttacaaaa
     5941 atttctctaa taaaatttaa ttcaaaatat cttcttatcc ttaattttaa tttaaggagc
     6001 aaaaatgaat ttacctatac ttgatttaca agcttatgaa aaagataaaa gcacttttct
     6061 taaaaattta agagaaattg cttctaaaat aggttttttt tatcttatca ataccagtat
     6121 agataaaaat ttaaacgaga aattattcaa acttggcaaa gaatttttta atctttctag
     6181 aagttcgaaa gagcttattt ctatggtaca ttctcctcaa tttagaggtt atactagcga
     6241 aggttttgaa tacacagcag gaactaagga ttatagagaa caactggata taggcacaga
     6301 aagagatgct ttaaactgga atttaaactc acccttatgg caaagactag aaggtcctaa
     6361 tctttggcct agtgaaattc cagaacttaa aaaaactttc ttaacttggc acaaacaaac
     6421 caaaaaagct tgtttaaagc ttttaaaaac ctttgctcaa gctcttgatc tacctagcaa
     6481 tgcttttgat aaactttatg gagaaaattc ttacgaacat tgtaaaatca tacattatcc
     6541 aaaaagctca aaaaatatca ctcaaggcgt aggttcacat aaagatggtg ggcttatcac
     6601 ttttgttttt caagaaaaac aaagtggact tgaagctttt atagatggta aatggcttag
     6661 tataccccca cttgaaaata gcgttgtagt taatatagga gaatttttag aactagctac
     6721 caatggctat ttaaaagcta ctattcaccg cgtgaattta agcccaaaag aacgctttag
     6781 catagcttat tttcttggag tgcaacttga taaggatata cctattttta agttaaatcc
     6841 agagcttgct aaagaaagta aaggtgtgga tactgatcct aaaaatccac ttttaagaaa
     6901 tgttgcaagt aattatttta aaagaatgat acgctctcat cctgatgtag caagtattta
     6961 tcatagtgac ttgatagaaa aatttagttt tgcataaagg agaaaaaatg actttattta
     7021 ctaaagcttt ttgcgtcgct actcttttta ccggttttgc atgggcaaat gaagaactta
     7081 aagttggctc ttctataaca cctcatgcag atattttaag atttataaaa tcagcacttc
     7141 aaaaacaagg ttatgattta aaaatttatg aatttaatga tggggtaatc cctaatgtaa
     7201 tggttgaaaa tggtgagtta gatgctaatt attttcagca tgaaccttat ttaaaagaat
     7261 tcaatcaaag gcaaggcacc catcttgtaa aagttgccag tatccatata gaacccatgg
     7321 cagtgtattc aaaaaaatat aaagaattta acccagagga aggacaaagc atttctatac
     7381 ccaataatcc tacaaatgaa agccgtgctt tacgcattgt agcaagcaaa ggacttatag
     7441 aagttaagga taatgagctc atcactcctt tagatatcac taaaaatcct aagaagctta
     7501 aatttgtaga gttaaaagat gctcaactta caaggagttt aaatgatgta gattattctc
     7561 ttattaatag caattttgct attttagcag gtttaaaccc tgtaaaagat gggctttata
     7621 cagaaagtaa atatagtgaa tatggcaata tcatcgccgt taaagaaggt aatgaaaacc
     7681 ttcctaaaat caaagcccta gtaaaggcct tgcaaagcga tgaagttaaa aaatttatag
     7741 aagaaaaata tcagggtgct ttaatcccta cattttaagg agaacaaata tgaaaaattc
     7801 aatcatttct tacccaagaa taggtgcaaa tagagaatta aaatttgcta ttgaaaaata
     7861 ctttaaaaac caaagttcta aagaggagct tttaaagagt gctaaggatt taaggattag
     7921 gcactggcaa gaaattcaaa aagctggcat tgattttatc cctagtaatg atttttcact
     7981 ttatgataat gtcttagatg cagctgtgct ttttaacatt gttcatacaa agtataaaaa
     8041 tttaaattta gatgctttag atgaatactt tgctcaaagt cgaggttatc aaggagaaaa
     8101 tggagatgtt acagccttag caatgaaaaa atggttcaat acaaattatc attatttggt
     8161 gcctgagtgc gataatgctg atattatagc tttaacaggg gataaaattt ttaaagaata
     8221 tctcgaagct aaagagcttg gcatagaaag caagcctgtt ttaataggca ttttcacact
     8281 ttttaagctc attgccttta aagatgaaaa aactcaaaaa ctcgccaaag aaaagctttt
     8341 aaacgcttac atagagcttt ttgataaact aaatgaactt aaagtgacat ggcttgaact
     8401 tgatgagcct tatttggttt atgatttaag caaggaagat atcgctttgt ttgaagaatt
     8461 ttaccaagaa cttttaaatc acaaaaaaga tcttaaaatt ttacttcaaa gctattttgg
     8521 agacttaaga gatatttatc ctaaactttt agaaagcaaa tttgatgctt tgggtcttga
     8581 ttttatcgaa ggtaaacaaa gcttagcctt agttcaaaaa tacggctttg ctaaagataa
     8641 aatccttttt gcaggtctta ttaatggcaa aaatatctat actaatgatt atgctaaaag
     8701 cctaaagctt attaaagagc ttcaaaaata tacacaaaat atcatcttaa acacttcttg
     8761 ctcactttta catgtgcctt atagcactga atttgaaagc aaattagatt caaactatct
     8821 taaacttttt tcctttgcca aagaaaaact tcaagaactt aaagatttaa aagaaattct
     8881 aaattctagc gaagaaaatc cgctctttag agccaatcaa gagcttttta aaaatatccc
     8941 agagcgttta gatgaaaaag tcaaagcaag gcttaaggct ttaaaaaaag aagattttac
     9001 cagaacgcct agttttaaag aacgcgcctt aatccaaaaa gaatttttaa aactccctct
     9061 tttaccaacc acaaccatag gttcgtttcc tcaaagtgct gatgtaagat ctaatcgcct
     9121 tgcctttaag caagaaaaaa tttcagctca aaactacact gaatttaacc aacaaaaaat
     9181 caaagaatgc atacaaattc aagaagaaat aggacttgat gttttagtgc atggagaatt
     9241 tgaaagaaat gatatggtgg agtattttgg agagaattta aagggctttt tatttactca
     9301 aaatggttgg gtgcaaagct atggcacaag gtgcgttaag cctcctgtaa tttggggtga
     9361 tgtatcacgc acaaagccta ttaccttagc ttggtctaaa tttgcacaaa gtttaagtca
     9421 aaaaatcgta aaaggtatgc taactggacc tgtaaccata cttaattggt cctttccaag
     9481 agaagacatc agtctaaaag aaagcactga gcaaattgcc ttagctataa gagatgaagt
     9541 attagatctt gaaaatgcag gtataaaaat catacaaatt gatgaagcgg ctttgcgtga
     9601 aaaactacct ttaagaaaaa gtgattggca tagtgagtat ttagattggg ctattcctgc
     9661 ttttaatctt gtgcatagcg gggtaaaagc taaaactcaa attcacactc atatgtgtta
     9721 tagtgaattt agtgatatct taaaagaaat tgacgctatg gatgctgatg tgatttcttt
     9781 tgaagcttca agatcaaact taagtctttt agatacccta aaagctattc attttaaaac
     9841 tgaagtagga ccaggagttt atgatataca tagccctaga gttccaagca tagaagagct
     9901 aagcttaacc atagaaaaaa ttttaaacaa attacctaag gagcaaattt ggatcaatcc
     9961 agactgcgga cttaaaacaa gggcttatga agaagttata gcctctctta aaaatttagt
    10021 tacggctacg caaaaaatac gagaacaatt ataaggagtt ttcatgtgca gtttttcttt
    10081 tgaagttttt ccaccaagaa aggatgaaaa tatcaaaaat cttcatgcta tcttagatga
    10141 tttagggcaa ttaagcccta attttatcag cgtaaccttt ggagctggag gctctattaa
    10201 ctcacaaaat actttagaag ttgcaagctt aatccaggaa gaatatcaaa ttcctagcat
    10261 agtacattta ccttgcatcc attctagtaa agaaaaaatc actcagatac ttcaaaaatg
    10321 caaagaaaaa aatcttaatc aaattcttgc tctaagaggc gatatatgtg aaaatttaga
    10381 aaaaagcaaa gatttttctt atgctagtga tttaatttct ttcataaaaa aacaagaata
    10441 ctttgaaatt tatgccgcat gctatcctga aaaacataat gaatctaaaa atttcatcga
    10501 ggatatacac catcttaaaa ctaaagtaaa tgcaggaaca gacaagctca ttactcaact
    10561 tttttacgat aatgaagatt tttatacttt taaacaaaat tgtgctttag caggtattga
    10621 catacctatt tacgcaggta ttatgcctat tactaacaaa agacaggttt taaaaatttc
    10681 tcaactttgc ggagctaaaa tccctcctaa atttgttaaa attttagaaa aatatgaaaa
    10741 taatgctttg gctttagaag atgcaggtat cgcgtatgct tgcgatcaaa ttgtcgattt
    10801 aatcacaagt ggtgtagatg gaattcatct ttatactatg aataaatcca aagcggctat
    10861 taaaatttat gaagctgtaa agcatttgct taaagaagag cttcatgtat agaaaataaa
    10921 ctattttttg cttttatctt aacttatttt cattttttag cttatggttt tctataagta
    10981 aaacaaaaat taaagataaa agcaaacctg gtataatacc caagcaaaga tagaaaaaag
    11041 aattatattt aaaaaagaag aaaagtgcac caaaaagcat taaagctaaa gatgcacctt
    11101 tgaaaaattc taaaatatag atcaatgacc ttcctcaaca acagttgcac ccgctaaata
    11161 tacataagtt aaaatcataa aaataaaagc ttgtaaaaat gccataaaag ttaaaagcac
    11221 ataagcagga agtggagcta tataaggaac taaagctaaa attaccatta aaaataaatc
    11281 gtcgccttta atatttccaa acaaacggaa ggacaaagaa accacgcgag aaagatgaga
    11341 gactatctct ataggaaaca tcaaaggagc taaaagttta ataggtccca tgaaatgagc
    11401 aaaatacttt acaaaacctt gtgccctaat accctcaaaa tgataatata caaaaactat
    11461 aatagctaag gacaaagtca aatttaaact tgcagttgga gcgtgaaaac caggtattat
    11521 acctataata ttactaaaaa acactataat ccccaaagtt gcaaccaaag gaagatattt
    11581 tcttgcacct ttttcacttc ccatggtatc tctacccata gataaaactc cctctaaaaa
    11641 agcctcacct aaattttgca taccgcgtgg aacaagttgc atagaacgag tagccatcat
    11701 agccactata acagcaatta aagctaccaa acctatgtga aaaaaataag aaaaagtatg
    11761 acttgtatca agcaaagagc taaataaaaa taaatctttc atggtttcct caaaaatttt
    11821 attctaaact cggaattcta gcaaaatctt acttatattt taatgaaaat ttacatccat
    11881 tctaaaactt gtgaaagttc tttagcaaca aaacacttaa gtcctatatc ttccaaaggc
    11941 ttagaaggaa caatagcatt tttaaatttt tgcattttag cttcttttaa acgcgtatca
    12001 aggctaaaaa cctctctaat ttctccattt aaactaagct ctcctataaa aatactatct
    12061 ttgctcaaag ggcgattttt aaaacttgaa ataatcgcag caaccacagc caaatccgca
    12121 gcagtttcac ttacttttac cccaccgcta atatttacaa atacatcata atgccctaaa
    12181 ggaatttcaa gctttctttc aagcaaagcc aaaagcatat ctaagcgatt tttttcatat
    12241 cctgtagcgc tgcgttttgg ataagaactt tcacacacta aagcttgaac ttctaaaacc
    12301 aaagcacgag atccttccat cacaacccct aaagcacttc ctgaaatagc ctttccacga
    12361 gtaaaaaaac gatttgctaa atcttttgcg ctaatcaaac ccttagcagt catctcaaaa
    12421 atacctactt cattcgttcc accaaaacga tttttaaagc ctcttaaaag tctgatttct
    12481 ttagtggcat ctccttcaaa ataaagcacc acatctacca tatgctcaag aaccctaggc
    12541 cctgctatag caccttcttt agtaatatgc cctatgataa aagtactgat attataagcc
    12601 ttgctaacac gcataagttc gaaagtaatc tcacgcacct gagtgatgct tcctgctgct
    12661 gaagtgactt tatttgaata tagagtttgt atagaatcaa tgataagaat actataatcc
    12721 tttttatgta attcttctaa aatattttca aggcaaagtt cagtaagtaa aaataaattc
    12781 ggagtattag cctcaaggcg atcagctctt aatttaatct gagctttact ttcttcgcca
    12841 ctgacataaa gcactttttt accctgtttg gctaaatttg aagcaatttt taacaaaagc
    12901 gtagattttc ccacacctgg acttccgcct ataagcacta aagaaccttc aacaagccct
    12961 ccgcctaaaa ccaaatcaag ctcattatca tctgtgctat atcttgtaaa atgttctaat
    13021 tccacatctt caatacaaac agcttcactt gttttcatac taacttgcgc aagctctttt
    13081 aaaactttaa tttgctcagc ttttaattct acaaaactat cccaagctcc acaatcagga
    13141 cattttccaa gccatttgct ttgttgattt ccacaagctt gacattcaaa aagtgcttta
    13201 ttttttgcca ttattcaaaa ataggatcta ataaagtatc taaataagca cttgcattaa
    13261 attcttgcaa atccgtcatt tgctcaccca cgcctacata aaaaatagga agctcaagct
    13321 ctcttgctat actaaaaagt gcaccccctt tagctgtccc atcaagcttt gtgataatca
    13381 caccatcaag ttttacaagc tcattaaaag ctttagcttg taaaattcca gcatttccct
    13441 gtgttccatc taaaactaaa atttttctat ggggtgcacc ttctaaagct ttgtttgaaa
    13501 ttctcacaat tttttcaagc tcatgggcta aatttttttg attttgcaaa cgccctgctg
    13561 tatcgataat aactctatca aaatcctttg cttttgcttt agaaatggta tcaaaagcaa
    13621 ccgctgaagg atcatgccct tgtgcagtta aaactatatc tacatccact ttttgcgccc
    13681 aaagttttaa ttgttcaatc gcacctgctc taaaagtatc acacgctcct aaaatcactt
    13741 tttgattttg gtttttatat aaataagcaa gtttggcaat acttgttgtt tttcctgctc
    13801 catttactcc taaaataagc tctacaaaag gtttttcttg attggtttct tttttttcat
    13861 aaagaaaata agaacccata acacgcttta aatcttcttt ttttacttca ttttgaggtg
    13921 gtaaataata aattatctct tcaactattt cataacttac atctgcttca agcaaaattt
    13981 cttcaagcaa atctttggtt atctttttat tctctccttt aatcccaaca atattttcaa
    14041 gagtttttgc aagtcctttt ttaaaaaaat taaacattaa agtatagcct tttgtatatc
    14101 gatttctagc atttcttcag gaataagccc taaatactga ttaatcaatt tagaatgctt
    14161 attgtaaaga aacatggtag gaattccatt taccccacct aaagctttag ctaaaagata
    14221 gttattttca ccattagcga ctttataaga tattttatgc tgttctataa atttttgaat
    14281 ctcatcgtta gatttatctt ctaataaaac cccaactata ttaaaatcat tattatactt
    14341 ttcttgtaat ttattaagat gagggatttc agcaatgcaa ggggtacacc aagtggtaaa
    14401 aaatacaaac aaaattgcct taccttcatc gttgaaattt aaaacgacat tttctttttt
    14461 aactgaaatt gatcctccat caatcaaatt aagtttaaaa ttcatatcat cactttgatt
    14521 tatacttgcc tcggtgctta aatttacatc attttgctgt ttttctttat cattgctaca
    14581 agcaacaaac aaacaagata ttgccactag taaaagtatt tttttaatct tcattattta
    14641 tcaatccttt attcttcttt ataaaaatgc taaaattata acatacataa gataatattt
    14701 ttttaaagac atattaatgg aaaaaacaga ttttagagca ttgcaaaaaa tacgcctttt
    14761 caaacattca aaactaaatt tcaaacaaga ttataaaata tttaaagaat gtcttaaaat
    14821 aataaaacta tttaaagcta aaaatatttt aatttttatt cctttgcatt atgaaccaaa
    14881 cttaataaaa tttcgccata ttcttaataa aaattacaaa ctttttgttc catttatgca
    14941 agataaaagt ttaaaaattg taaaattaag attgcctttt attaaaaaaa ggtttcgggt
    15001 tttagagcct atagattctt tttttaaagc aaaaattgat ttagctattg tgcctgtaat
    15061 tggcgtcgat aaaaatttaa aaagaatagg acatgggcaa ggtttttatg atagattttt
    15121 tgaaaattta aattacaaac ctcatataat atttgtccaa agtatagatg ctttaagtca
    15181 aaataatcta acacaaaagc atgatatttc aggaaaatta tacataaacc cttataaaaa
    15241 atattacaag aaagaaagaa aaaatgatag aatcacttat cgcacttata gccgctatag
    15301 tcggactcgg tataggatat ttagttgcaa aaaaaatcaa tgatgccaaa tatgaaattt
    15361 tcgtagaaca agccaaagct aaagccaaag ctatagaata cgaagcggag cttattttaa
    15421 aagatgcaaa aaattcaatt cttaatgcag aattagaagt taaaaaaaaa tacgaagaaa
    15481 aaactcacaa aattcaaaaa gattttaatc aaaaatttga tgatctttct aaaaaagaac
    15541 aaaaacttca gcaagaagaa gaaaaactaa aagaagataa agaatacctt tgcaagtcac
    15601 aaaaatacat tcaaaactta caatctgatg ttgataaatt aaaaaataaa tatcaagaaa
    15661 aacttgacga tgttttaaaa attttagaac attcgacagg acttacacaa aatgaagcca
    15721 aagaaatcat tcttaaaaaa gtagaagaaa attctcgcga gcaaattgca catatagtaa
    15781 gaaaatatga agaagaagca aaaaatgaag ctaaaagaaa agctaatttc atcattgctc
    15841 aagctacttc tcgttttgca ggtgaatttg cagctgaaag acttatcaat gttattaaca
    15901 ttaaaaacga tgaacttaaa ggacgtatca ttggtaaaga agggcgcaat gttaaaacct
    15961 tggaaatggt tttaggtgtt gatattatca tcgatgatac accaggtgct attatagtaa
    16021 gttgttttaa tctttatcgc cgtgctattg ctacaaaagt tatagaactt ttagttgaag
    16081 atggcagaat tcaacccgcg cgcatagaag aaattcacga aaaagtgtgt aaagaatttg
    16141 acagtgccat tctagaagaa ggcgaaacca tagttatgga tctaggttta aataaaatac
    16201 accctgaaat tgtaaaactc ataggaaaac tcaaataccg agcaagctat ggacaaaacg
    16261 ctttagcaca ttctttggaa gtggctcacc ttgcaggaat cattgctgct gagtgtggtg
    16321 gagatgagaa tttagcacgt cgtgcgggaa ttttacatga tataggaaaa gcattaaccc
    16381 atgattttga aggatctcat gtggatttag gtgcagaact ttgcaaacgc tacaaagagc
    16441 atcctgtagt aatcaatgct atttacgcac atcatggaca cgaagaagct acaagcatag
    16501 aatcagcagc tgtttgtgca gcagatactt taagtgctgc acgacctgga gctagaagag
    16561 aagtgttaga agctttctta aaaagagtca gtgagctaga agatatcgct aaaagtaaag
    16621 aaggaattaa aaatgcctat gcaatcaatg ccggaagaga aattcgcgtc atagccaatg
    16681 ctcagcttgt taatgatgat gaaagtgtac ttttagctaa ggaaatagca gctgaaattc
    16741 aagaaaaaat gcaatatcct ggtgaaatta aagtcaatgt tatacgtgaa cttagagctg
    16801 tagaatacgc taaataaggt ttattatgca agatatgatt gatactttaa taaaatatgg
    16861 ttatattgtt ttattctttt actctttagg gggcgggatg gttggaattt tagctgcagg
    16921 agttttaagt tctcaaggaa aaatggatct tagtttttgc attgctcttg cttttattgc
    16981 taataccata ggttcaactt tgctttttat acttggaaaa tattacaaaa aagacattat
    17041 gccttatttt aaaaaacacc gacgcaagat agcccttgct atgataaaaa caaaacaaca
    17101 tggaattatt ttacttgtaa ctcaaaaatt tatttatggt ttaaaaactt tcattcccat
    17161 agctgcaggt atggcaaaat ataattttat taaatttttt attatcaata ctctagctag
    17221 tttggcatgg gctattgttc taggttttgc tgcttatact tttgggtatg ttattgaagc
    17281 aatttttgat aaactgagtt tatatcctta tgctgctcct ttatttttat tatttttagc
    17341 cggaataatt tggctttatt taagtaaatt ttctaaaaaa taatgtctct atggaattct
    17401 ttttcttact cttttaaaga atttcattat ttatttttct ctgttgttgt tatttttatt
    17461 tttaatatcc ttttagaata taataatttt ttaaacttta aaaaccaaaa acattacctt
    17521 atagacaacg ctctattaac gcaccaatat ataaaatata ataaaaaaaa taaaaaatac
    17581 tgggttttaa agttacaaac tgaaaacttc actttttata ctacaagttt taaggattta
    17641 aatttaagca agaatcaatt tttaagcctt agaattatca cccataatat taactttaaa
    17701 gactatctga gtaaaagttt ttacgcacct tcttatgatt ttgaaaaatt aaaagaaaaa
    17761 gaatacaatc ccattatatc ttacttctta aatcaacata caaatgaaaa gattaaagaa
    17821 ttttatggtg ctttattttt tgcactgccc atatctttag agcttagaaa cgatgtaaat
    17881 tactacggta tagcacacct tatagcaatt agcggttatc acataggctt actttttagt
    17941 ttaattttct ttattttagc tccaatttat agttttttcc aaaaaagata ttttccttat
    18001 agaaatttac gtttagattt aagtatttta atttttgcac tacttttagc ttatgcttgt
    18061 ttaataggat ttgtcccttc ttttgtgcgc tccttgatta tggctttttg ggttttttat
    18121 ctattgtgta aaaatataaa aatcattaat ttcgttacgc ttttttgtag tattttattg
    18181 tgcatttctc tttaccctag acttttattt agtattggat ttttattttc tattttaggt
    18241 gttttttata tttttttata tatgcatcat tttgcaaata aatttaataa tcttataaat
    18301 attattttgc ttaatatttg gacttttttt gctatggttt tacctgtgct ttattttttt
    18361 ccacttataa gctaccaaca aattttaggt attattttga gtggaatttt tgtaatattt
    18421 tatcctttag tattattttt gcatcttata aactatggag atttgctcaa ttttatctta
    18481 gatgaatttt ttaaatttaa aatttatgga actaatatcc atatcccatt ttggattttt
    18541 ataagttatc ttattgcttc tttaatctct gtgcgattta aatatctagc ttttctttgt
    18601 atttttgcga attttattcc cttcattatg attgtgattt agaaaataat agagtttaag
    18661 cccaaaaaga taaataatcc aagaaatata aatccaaata aaaaagaata aaatagtaga
    18721 aaaagatcca taaacgctag cgtatgtttt attatatacc acgtaatata caaataaatt
    18781 ttttcctata taccaaatag tacccgctcc aaaagatact aaagctaaac ttttaagagt
    18841 tcccttatga acagaacttg aataagatat aaaaaataaa ccccaaataa ttacaaaggg
    18901 taaaatttca aaaaaattaa accctatttt ataatcatct aaagtttgtt ggataaaacc
    18961 tgaaatataa aaactaagcc caagccccaa aggaacaaga gttaaaagag tccaataaga
    19021 actaatactt tgccaaagtc ctttaggttc atttttagta atgcgattga ttacaaaatc
    19081 atagcctgaa aaaaaagcta aagaagtaaa tgccatagca ataagaccta caatacccaa
    19141 atttacacta ttttttaaaa aagtatcgat gtaggtagca acaacatctt gttgcgttgg
    19201 tattaaaaaa gcaaaaatta cttgctttgc tttttcataa taagctttaa aactggaaat
    19261 ttgcgtaaaa acagaaaaac atacaaataa aataggtatt aaagataata cagtataaaa
    19321 actaagcgct gctgcataat ttaaaatttc cttatcacgc aaatttagta aaatagtaaa
    19381 aaaatttttc accttctaaa gtcccatttt aaaaggattt agtatattat ttggatcaaa
    19441 agctttttta atatttctca ttaaattcat ttcggcttca gaaaaagcta aattcataaa
    19501 agatgcctta gagagtccga taccatgctc tccgcttaaa gttcctccaa gtttcactgt
    19561 taatttaaaa atctcttcca cagcttcata gccttttttc acctgctctt tatcattttt
    19621 atcaggaacc ataacattag tatgcacatt tccatcccct gtatgtccaa aacaaggaat
    19681 tttaaaacca tattttttag aaatctcatc tataccttca agcaaagtag gtagtttaga
    19741 acgcggaact gtaatatctt cattaagttt taaagttcca tacatggcaa tgctttgaga
    19801 acaatttctt ctagcaaacc aaatatctgc ggtttcttgt tcatcttttg ctattttaaa
    19861 ttcgctagcg ccagcttcta aaaaataata ttctaaattt cttaaatcct catcaatagc
    19921 ctctttaaca ttaccatcca catcagcaat caaaatagct ccagcttcta taggcaaacc
    19981 tttattaaat ttgctctcaa ccgctctaat gctaagattg tctaaaaatt ccatagatac
    20041 aggacttaca ccgctagcaa gacttttgta aaccgcattc atagcacttt ttacacttgg
    20101 aaaaatagca aaagcagttt ttttaaattt aggcaaaggt attaatctta aagtaagctc
    20161 acttaaaact gccaaagaac cttcactagc gattaaaatt cctgccaaat tataacctgc
    20221 tacatcttta atagtgcgtt tccctgcacg aatgatttct ccgctaggca aaacagccct
    20281 taaagccatc acataatctt ttgtaatgcc atattttgca gctctcattc ccccagcatt
    20341 ttcgcttaca ttacccccta agcttgaata ctccatgcta gcagggtcag gtggataaaa
    20401 aagtccgtat ttggctactt ctttttgtaa atgtatatta ataaccccag gttgcacaac
    20461 agccactaaa ttttcaagat caatttctaa aattttattc atatgctttt caaaagcaag
    20521 caccaccccg ccattaacag ctaaagctcc tcctgtaaaa ccagatcctg agcctcgcgg
    20581 tatgactatg atattatttt cattacaaaa ttttaaaatt cgagcaatat cttcttcatt
    20641 tcttggaaaa agaaccccat cgggtaaata atgttttttt gtcgcatcat agctataagc
    20701 tcttttgtga atttcatcaa aataagcgtt ttcttctcct aaaaatcgtt taaaatattg
    20761 ttcaaattct tttttcatgt ttattgcacc ttaggaagat taatcaaagc atcataatac
    20821 ctataataat ttcctatttc ttgagagtta aaatcaaaaa aattactttt atatccacct
    20881 atacgagaat aaaaaggaac ctgaacgcta gttggcttgc ttataggcac ttcataaagc
    20941 ttattaaaat cttgacaatc cacaacttct gcatgatttt ccaaagccac aaccaaaatg
    21001 ccgaccgcat tatcatcaca aaattgccta agatctgaac gcttaggaga aagagtagcc
    21061 gttctaatta attgtgctcc aaaaatatca atatgggtaa aatatatctg cggaaattct
    21121 ctaacaagtt cattataagt ttgttcatca ggagcaatta ccaatcctct atcataaaga
    21181 aaatttaaaa caacctcatc acctacttta ggtaaaacat ttggtaaagg caaagcatct
    21241 tgcttaagag ctgaaaaaac actaaattct aattttgcca aaccattttt tttatctata
    21301 acacttgctc tagcgatgat actttgcgaa ttgctaaaat gttgcactac tacgccactt
    21361 gaataaagtt ttatatcatc actatcttta atataaccat aaatatcatc aacttttaca
    21421 agttcacttt ttataggttt taaatcaaat ccaaccgcaa agaggctaag gtttaaagct
    21481 aaaaaacaca ctatagtttt aaacaaattt gctccttaaa taaaaattta tagaattata
    21541 atcctttttt gttaagcaat tgtaagaaaa ataaagtaaa atatagcttt caaatttcaa
    21601 aattctttta aaaattaagg ttatctcatg aaaaaattat tgcttttatt tatttttgtt
    21661 gttcaaagct ttgcagcttt aagtgttgaa gagctaactt gggataatgg agataccttg
    21721 cttaaattcc tacaaagaaa ttccatacct atgtcgcttt attatggact tgatagagaa
    21781 gatcaagaac ttgcttctga tatagcctat aaaataaaat atcaagtttt aaaagatgaa
    21841 aacaacaaca tagaacaagt tttaattcca attagtgatg atttacaaat tcatatctat
    21901 aaagataaag atggacaata cactcttgct tttactcctg tatcttatca aaaagaagat
    21961 agaattttac atttaaccat taaaagctct gcttatcaag atgtctatga agaaagtggt
    22021 agcagtactt tagctcgtgc tatggttcgt gcttttcgag gaagtataaa ttttcgcaat
    22081 atccaaaaag gtgatgaagt aaccctatat tatgaacaaa aaagacgcat gggtaaactt
    22141 tggggcgata taaatataaa aatggcaatg gtagaaatta ataaaagcgc tagagaagtc
    22201 ttttcttata atgatatatt ctatgatcgc gatggcaaag aattagaatc ttttttactt
    22261 acaaaacctg tgaactacac tagaatttcc tctcctttta caacagcaag atatcatcct
    22321 atattaaaac gctatcgcgc ccatcttggt atagactatg ctgcacctac tggaactcct
    22381 gtaaaaagtg ctggcaaagg agtagtaacc tttataggca caaaaggtgg ttatggaaat
    22441 gtaattcaaa tcaagcatga ctcaggttat atgactttat atgctcatct tagtcgtttt
    22501 gcaaaaatta aaaacggaca aaaggtaaat caaggacaag taattgcata tgttggttca
    22561 acaggtatga gcacaggtcc tcatttgcat tttggagtat atttaaataa taaagctata
    22621 aatcctgcat ctgttgtaaa aatcgccaaa tcagaactta gtggaaaagc aaaagagaat
    22681 tttaaacata tcatagctgg atacgagcag gttgttaaag aagccctagc ctcgaatcaa
    22741 cctaatcctc caaaagaaga agattttgaa aactatatag aattttaatt actcaacaac
    22801 gctttatctt ttgcattgat taaagaattt agaagagttg caagctcttc tttttctttt
    22861 tcattaattt cacaaaaatc tgcatcaatc aattgtttta ccaaagcttc atttaacaaa
    22921 tctccatcgc caaattctct agctttttga atgattttta acactcttaa atcttttctt
    22981 tcatacattt taatccttta aataaaccac actcacaaaa cgcttaggcg ttttatcacg
    23041 acgataagaa aaaaaactct catcatcaaa actacaaatt ccacaatctt taatattttc
    23101 aatgcctaaa ttttgagctt gaaattttac taaagctttt aaatcaagtt tatcatcttg
    23161 aacaaattct ttaaattctt ttttagcaaa ttctaaaatt tctccatcta tttcataatt
    23221 tttagcacaa attccaggca ggataaaaag atgaaattta ttcttatcta aatgtgaatt
    23281 ttgcatagta atttgatcaa cgcattcttt taggatattt tcaaagcttc cttttctacc
    23341 tgaatgcaaa gctgctataa tgccgctttc atgatataag atcaaaggca gacaatccgc
    23401 acttaaaaca caaagagcga tatttttttc tttacttata agcccatcac agctaagatt
    23461 ttttaaattt ttttcataaa tgataacttt atgagagtga atttgatcca taaaaacaca
    23521 ttttttaata tctttaaaac ctaaatgata aaataaattc tcactataaa ccttagctct
    23581 aaaaacatta taatccttat caaaagcaca aaaaataacg actttatcat tttctaataa
    23641 agataagaaa ttctttcgac ttcttcccat gataatcctt tgtttttacc ttgcaattgt
    23701 gcataaatat aacgagcaag taaatcactt tctatattta tttttctacc tacttgatag
    23761 tctttaaaaa gcgtttcttt aaaagtaata ggaataatag taagcctaat accatttttt
    23821 aaaatttcat tgatagtaag acttactcca tcaacagcta tacttccttt ttctgccata
    23881 aatttcatag cttctttagg taaagatata taaaaatcca ctccattttc atctttttga
    23941 atcttttcaa gtgtgccgat aaaatcaata tgtccttgca taagatgtcc atcaattcta
    24001 tcgccatatc ttaaagcagg ttctatatga actttatctt ttaaattctc tatagctata
    24061 tgagtgcgac tttcacgaga aagctccact tcaaaacccc cttcataaag ttttgttaca
    24121 cttaaacaag ctccatttac ggctatgcta tcgccaagat ttgggcgata ttttgctttt
    24181 aagcttaaag tattgttttg ataagattga actttagcaa tttctcttat gagtccatta
    24241 aacatttttt accttaaaaa atcttattta ataatttatt caccgcttta tcaactttat
    24301 cgcccgtact tttagcacca tcactcacac cgccacctac tacattttta atagaattta
    24361 acacacttcc tgcatttaaa ttcactttag gattttccgt agttcctgta atacttcctt
    24421 taaaattggc tctatcgagt ttaatatcaa aaggcaaatt taaagctccg cttttagaat
    24481 ttaaagctcc tgattgtact aaaatataag aacgatctgc ttgcatatta agatcaagtt
    24541 tgatattttc ttttttaatc aaagctttag cattagcagt gcgataaaca tcattggtaa
    24601 tatcttttag tgttaaaatt tttaaagcat tggtaataag atttggtttt aatttaccct
    24661 ctttcatatc caaattaacc tctccttctt cacttaaaag attgtaattt gccttcacat
    24721 ctgccttacc ttgataaaca tccataaaat ctaaaccttg agctagacta cttaaatcca
    24781 ctccatttaa atcagcaagc aaaaggttat ctttaagtgt gctttgaagc ctcccttcaa
    24841 ataaatttgg actatttaca acaaaattta aactcttatc aaaacctacc tttccattaa
    24901 attctgcctt acctttaagt tttctatcca acaaaaagcc tagttttgaa aaatcattta
    24961 tctttagatt aaaatccgaa tttaaaagca ttttgcttat atcaaaactt ccttgtagct
    25021 ttgtaagatc agctaaagat gaatttaaaa cagaatcaaa ttgagcgata ttgtttttaa
    25081 aattaatttt ggtatttaaa tcataacttg tattgtttgg aaaattttta tttaaaattt
    25141 tacttaaagt tgcagcattt aaaataccct tagcttctaa atttgcttta ccattaagat
    25201 tgttaaaatc gatattatct aaattaactt ttgcattaac aatcccactg gcataatttg
    25261 gcatacctgt tataacaaaa agtttagata aatcaagttt atcaatgttt aaatcaagtt
    25321 ttttaccatt tgaatcagcc ttgattacac catctgccaa atttgcattt gcatttaaat
    25381 tttgtacttg agtgcctata atatgagctt ttgcagtaag atctgcctta ccttgtaatt
    25441 tttgtcctgc tatagcacta aactgagaca agtcatcaat aaaagcattt aaatctgtat
    25501 ttaactcact attttttaaa ttataagttc cttgaagttt tttgatatta agcaaatttg
    25561 aagcaagtaa agcattgtaa gaaatattac tattttttgc atttgcttta gcatcaaaac
    25621 taaaaattgc atttggaagt tctattttag ctattttttt aagctcattg gtgttaatct
    25681 ttgcattgtt tatttttgct tcaagatcaa aattagaaaa atccaaatct gcatttagaa
    25741 gtttagcatt taaatttcca gaaaccaaag ctccgtatcc tgcaagagct aataattttt
    25801 ccaaacttgc ttcattaata tctgcaaaaa ttttattatt tttcaaactt gcctttacct
    25861 ctccaccaag tccgataact tgagcattta aacttgataa ggcattattt acaacacttg
    25921 tttgacctat cacatccaaa ctaccattta gtctagtttt tgtaagtttt tcaagcttta
    25981 caagagaagg aatacttaaa ttaaaatcag tacttaaagc attcttgcta atatcataaa
    26041 gagttttttg ggtttgtaag ttaagataat cattgtaaat tttacttaca gcataaatct
    26101 tatcttcttt aatattggcc aaaatttctg ctttaggatt agaatttaaa ggcaagtcta
    26161 aagaaaaatc tttttttatc gcctcatagt ttatataact tgtatcaagt tttatgatga
    26221 tatttccatc aggttttaaa ttctgtgctg aaatttttgc ttgagcattt aaaaaacctt
    26281 tagcgtaact agggtaagat aaaagatgaa gtatttcttc tatcttaaga ttttgcgcat
    26341 ctaaatttaa agcaataggg ctgtaattat acattcttgc atttaaaagt acatttgaac
    26401 ctagtaaata accctttcca tctaaagtaa aatcacttgc tttaccttga atcttaccgc
    26461 caaaagaaag gttttgattt aaatttaaac ctaaattttt agcataattt tgatttaaag
    26521 aaataagata gtcaagatca aatccaagct taaaaggact caaagctccc ttaagattaa
    26581 aatctgccat atttgcgata tttgcttgca attcaaggct tgaaaaacgt aaattaaaat
    26641 gcgtgatatt tacatctaat cccgcacttt ctttgatctt tttttgcgct atatttgcca
    26701 ctatattatt accaaaactt gtgaaaagta tggtataaat agcaatcaaa agcacaacaa
    26761 caaaagctat aactccataa aaaatctttt tcatttttat cctttagttt attttataaa
    26821 ataactttag tctataaaac taaactttta taaatatttt aatttaaagt attgacaaaa
    26881 ttcatttttt atagtatgat attatcactc taaataaaag agtgctaaaa tcaatatttt
    26941 taaggatgga caaaaatgaa ttttcaacct ttaggaaagc gtgttctagt taaacgcgta
    27001 gaagaaacta aaacaacagc ctcaggcata attataccag ataatgctaa agaaaagcct
    27061 ttaatgggtg aagtagtagc agtaagtaaa gaaatcactg atattgcaaa tggtgataaa
    27121 atcgtgtttg ctaaatacgg tggaacagaa attaaacttg ataataatga atatttagtt
    27181 ttaaatttag atgatatctt aggaatttta aaataattta taaaaaagga taaaaaatgg
    27241 caaaagaaat tattttttca gatgaagcaa gaaataaact ttatgagggc gttaaaaaac
    27301 ttaatgacgc ggtaaaagta actatggggc caagaggacg caatgtttta atccaaaaaa
    27361 gctttggtgc tccaagcatt actaaagatg gcgtaagtgt tgctaaagaa gtagagctta
    27421 aagatagtct tgaaaatatg ggtgcttcac tcgtaagaga agtagcgagt aaaacagctg
    27481 atcaagcagg cgatggaaca actactgcaa cggttttagc tcatgcaatt ttcaaagaag
    27541 gtttaagaaa tatcacagca ggtgcaaatc ctatcgaggt aaaacgcggt atggataaag
    27601 cttgcgaagc tatagtagca gaacttaaaa aactttctcg cgaagtaaaa gataaaaaag
    27661 aaattgcaca agttgctaca atctcagcca actctgatga aaaaatcgga aatttaatcg
    27721 ctgatgctat ggaaaaagtg ggcaaagatg gtgttatcac tgttgaagag gcaaaatcaa
    27781 tcaatgatga attaaatgta gttgaaggta tgcaatttga cagaggttat ttaagccctt
    27841 attttatcac taatgcagaa aaaatgacag tagagctttc aagcccttat atcctgcttt
    27901 ttgataaaaa aattacaaat ttaaaagatt tattaccggt tttagaacaa attcaaaaaa
    27961 caggcaaacc acttttaatt atcgctgaag atattgaagg tgaagcgctt gcaactttgg
    28021 ttgtaaataa acttcgcggt gttcttaata tttcagcagt gaaagctcca ggttttggcg
    28081 atagaagaaa agctatgctt gaagatatag cgattttaac aggtggagaa gtgatttctg
    28141 aagaacttgg aagaactctt gaaagtgcga ctatacaaga tcttggacaa gcttctagtg
    28201 taatcatcga taaagacaat acaaccatag taaatggtgc aggcgaaaaa gcaaatattg
    28261 atgcgagagt caatcaaatc aaagcacaaa ttgctgaaac aacttcagat tatgacagag
    28321 aaaaattaca agaaagactt gcaaaattaa gtggtggtgt tgcagttatt aaagtaggtg
    28381 cagcaactga aactgaaatg aaagagaaaa aagatcgcgt tgacgatgct ttaagcgcta
    28441 ctaaagcagc agttgaagaa ggtatagtaa tcggtggtgg tgcagcgctt atcaaagcaa
    28501 aagctaaaat caaacttgat ctacagggtg atgaagcaat tggcgcagct atcgttgaaa
    28561 gagctttaag agcaccttta agacaaattg ctgaaaatgc aggatttgat gcaggtgtgg
    28621 ttgtaaatag cgtagaaaat gctaaagatg aaaacacagg atttgatgct gcaaaaggtg
    28681 aatatgttaa tatgcttgaa agtggaatta tcgatcctgt taaagtagaa agagtagctt
    28741 tactcaatgc agtttctgta gctagtatgc ttttaaccac agaagcaaca attagtgaaa
    28801 ttaaagaaga taaacctact atgccagata tgagcggtat gggaggaatg ggtggcatgg
    28861 gaggaatgat gtaatatctg ctctaacctc ttatcagcaa ggattttcct tgctgattac
    28921 caatttaatt taaaaacact cccttgattt tctacagatt cgcaaataat cttaatatca
    28981 ttatcatcac aaactttttt taccaaagaa agccctatac caaatcctcc ttgatcggta
    29041 ttaaatcttg tatatctatc aaaaatatga tttaaatttg actttgaaat tccacaacct
    29101 gtatccgcaa tacttaaaaa attggctttc aaaattatag aaattactcc acctttttta
    29161 ttgtatttaa tagcattgct tataagatta tcaatcaatt tagaaatttg acttttagga
    29221 gcaaaaatat ttgcttgatt taaatcaagc tttagtgtaa tttttttttg ctcaaaaaat
    29281 actttaaaat attccaatct ttcttcaagt agtattctta aatcaaattt ttgtttttct
    29341 gtttctaagg tattagggaa attataaaaa acaagatcag aatacacttg agacaaactt
    29401 tttgcagcaa gcttaatcct tgtaaattta gcattatctc ctaaattttg atgctcaagt
    29461 tgttctatac tcatcaaaat aacacttaat ggggtattga gttcatgagt tgaatcttta
    29521 ataaaacgat ttagtgtgct gattttatcc tccaaaggct ttagagcaat ttttactaaa
    29581 atataagata ttaaacccaa tatgcaaaaa gccataatag caaaaccaaa aactttcgtt
    29641 ctaatccaaa aaagatcttt gccaacatct tcaccctgta ttaaaatttg caaaccatcg
    29701 ttagtattta cttcttcatt gctagcatgt cttaaaaaat aatgatctgc actcatagga
    29761 gcaaggaaaa aaaccttatt atcacaaata cctctacctt taagctctat ctttgccttt
    29821 cttaaatcaa aatctatatt actaaaaaca atctttttaa catcaaatat agcaaatttt
    29881 agtgctgtgc tttgagcaat attttttgca cttatatcta taggggtaaa acgagaattt
    29941 aagatgctta taacaatgtt tctatgattt tctctcaaag tggcaccctt taaaacaact
    30001 aattcttcat ataatttttg ataccataat gcaaaaaaaa tagttaaaaa aatacctgta
    30061 gttgttaggt agattaataa aatttgccta atgacttttt tagccatagc aatatcccct
    30121 gcctctttga tttataattt tttcttttcc taaaatttta cgtaaatttt tcacataagc
    30181 ccttaaactt agctcactag gctcctcatc ataatcccag agttcttcaa aaattctctc
    30241 tgtacttaaa aagttgtttt tatttttaag taataaagac aaaagcttaa tttctttact
    30301 cggtaaagtc aaggctttat tattatggta aagaatttgt gtagtaaatt caaatctaaa
    30361 tccatctcct aaatcttcaa aatcttcatt tttatgtgaa aaagctcttt taagcaaagc
    30421 tttaaccctg atagataact cggcaagttc aaaaggtttt tttatataat catcacaacc
    30481 tgcgtcaaag ccttgtttta aatcgtttgt tgtgtttaaa gaagtcatga aaattgctgg
    30541 agtttgcttt ccgctttttc ttaattcttt aagtaatgaa aatccatctc ctaaaggaac
    30601 ttttacatct aaaatccaaa gatcaaaata tctttcataa gccatatcta aagcttcttg
    30661 cgcattatcg cataaaaata cttcatatcc ctcatcgttt aaaaactctt caatgatctc
    30721 actcaagctc aaatcatctt ctaaaagtaa aattttagca gccataattt aaatctttct
    30781 aacttcaaa
//
LOCUS       DBBXPZ010000010        30438 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.010, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000010 DBBXPZ010000000
VERSION     DBBXPZ010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 30438)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30438)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30438
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.010"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..432
                     /locus_tag="ACJFD7_000339"
     CDS             <1..432
                     /locus_tag="ACJFD7_000339"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0859188.1"
                     /translation="KKERYWEVTKQEIQKLDTNLLGHPKPLFSLSMVELWERFAFYGI
                     RSLLVLFMATTISKGGLGISTEYASAIYGIFAGCLYLAALPGGWITDNYLGQKKALFL
                     GSFIIALGHISIALSILSTPIFFLGLLLSLLVLDFLKLALL"
     gene            441..581
                     /locus_tag="ACJFD7_000340"
     CDS             441..581
                     /locus_tag="ACJFD7_000340"
                     /inference="COORDINATES: protein motif:HMM:NF013050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859189.1"
                     /translation="MLYKQNDTRCDTGYTIFYIGINIGAFIAPLICGFVQAKWNYHLG
                     FG"
     gene            832..1511
                     /locus_tag="ACJFD7_000341"
                     /pseudo
     CDS             832..1511
                     /locus_tag="ACJFD7_000341"
                     /inference="COORDINATES: protein motif:HMM:NF013050.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015333 - peptide:proton symporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide:H+ symporter"
     gene            1711..3264
                     /locus_tag="ACJFD7_000342"
     CDS             1711..3264
                     /locus_tag="ACJFD7_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HGG0859190.1"
                     /translation="MSKNVKNLDTSFFGHPKPLLSLSLTELWERFSFYGIRPLLYLFM
                     IASFEKSGMNLKPEEASAIMGIFASCLYLAALPGGWLADNYLGQKRAILLGALTIAFG
                     HLCIAFSYFNNKMIFVGMVFLVIGTGLFKTCASVMVGMLYKKNDARRDSGFTLFYMCF
                     NFGAFVAPLICGFLQKEYGWHFGFGAGGIGMLLAVIIFYLKTMPDLKEFDEKVGIDST
                     WDRPSKKSKNAFYIIIVSGIVLLGAIFLILGGFIKLDAQVINKNIILTILACAGIYFL
                     YLFAFTSLKIEEKRNLIIFIVLFLAAALFWSVYEQQYTSFNFFAEKLIDKTILNYEIP
                     TIWFQSLGGLFVILFAPFSAFIWTICAKNNKEISSIIKFALGLLGAALAFLIMALASN
                     HAISLNGDANTLRENLENSSQIILVSPWWLVSSFLLMVLGELCLSPVGLSIMTKIAPN
                     LIKSQVMGLWFVASALGNALAGFIGGKASEENIAYLPNLFYQCMWILLGAVIILLILK
                     KPINKILKN"
     gene            3280..5070
                     /locus_tag="ACJFD7_000343"
     CDS             3280..5070
                     /locus_tag="ACJFD7_000343"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HGG0859191.1"
                     /translation="MSIYKQRVLELRRLMKENNIDAYLILSADPHLSEYLPEYYKNRV
                     FISGFKGSVGTVLITQEEGFLWVDGRYWLQAQKELEGSGILLQKQDAKNTFTKWLEKN
                     LSEDQILGIDFALLPLSLQKDLKINCKANLKHIDLISPLWKDRPTLPQEKIYEHELEY
                     CSYSRKEKLALVRQKMKNLNVTSHLISSLDDIAWLTNLRGNDVNYNPVFLSHLLILED
                     KALLFVDQKKVNSELEKKLNLDGFWLKNYDEIIMELEKLANTNLLIEPSKMTALLINS
                     LDKSVKIIQEINPSTHLKAAKNTKEIAHIQDAMIEDGVALCKFFAWLEEAIENKELIS
                     ELDIDVKASEFRAQSKYYISDSFATIAGFNENAAYPHYKATKESFAYLKKDGLLLIDS
                     GGQYKNGTTDITRVVPIGKANAEQIHDYTLVLKAHIAISSAIFPKDIAMPLLDAITRA
                     PLWKEQIDYIHGTGHGVGYFLNVHEGPQVLSYLSPVLEKTKAKEGMLTSIEPGIYKVG
                     KWGIRLENLVIHTKVENPKNKDFGEFLYFKPVTLCPFEISCIDTKMLDEKEKEWLNNY
                     HKEVFKKLSPKLGDYPKALVWLEKRTKAIF"
     gene            complement(5191..6996)
                     /gene="mrdA"
                     /locus_tag="ACJFD7_000344"
     CDS             complement(5191..6996)
                     /gene="mrdA"
                     /locus_tag="ACJFD7_000344"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HGG0859192.1"
                     /translation="MRMRLVVGFILLFFIFLLSRVYYLSIKSNVYYEELAKQNAIKTE
                     FLPPVRGQITDRNGTLLAINDLGFSISIKPYLSIKKSNKGILDKELSELTNLFPDLNA
                     SKLAEIYKRNDSYYNQDFIKVVDFIPYDEIIPHYSELNLNKTIKIDPVVKRKYPFGKL
                     ASHIIGYVGKANLQDVQENEIAKLSNYTGKSGIERYYNDILQGEKGTRVYKVNALNQE
                     VEQLSYTPAMSNDIELTIDIELQSYLTSLFEGNAGAAIIMNVNDGSILAAGSFPEYDL
                     NPFVTGISFKDWDELSNSLDHPFTNKLINGYYPPGSVVKMGVGLSFLNSKNISPSTQY
                     VCNGSIELGGRFFRCWNRSGHGPVDLKHAIKYSCDVYFYNGSLQVGIDQISETLSRIG
                     FGAKTGVDLPSEFVGTLPSKEWKMQRYRQSWFQGDTLNTAIGQGNFLATPMQIARYTA
                     QIAKGGEVIPHFLKSIENNNTTIENQMDENKKEIFTLFEKSQLPYIRDAMYAVANEQG
                     GTSYRYLHNLDVKVAAKTGTAQVVGFSQTDKNRVDEKQFEYYTRSHAWLTSYAPYSKP
                     KYVVTVLLEHGGRNITSGATVAKIYQKMIDLGYFK"
     gene            complement(6997..7491)
                     /locus_tag="ACJFD7_000345"
     CDS             complement(6997..7491)
                     /locus_tag="ACJFD7_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859193.1"
                     /translation="MRRNLSAYKAKFNGAYVFLGFFFLIYQILGSTFVYTPLLYGIFF
                     CYMFCLLEERERTFSKLDFRWYFSLFFLFFTDITYNFFIFSSWLAFFIFYYLCADWIK
                     TNLKIGKFIPVVFVLCAYGIILFLDMILFYIGDEKIKILGWAYIVSVFIECCLAYVFF
                     KGKI"
     gene            complement(7488..8084)
                     /gene="yihA"
                     /locus_tag="ACJFD7_000346"
     CDS             complement(7488..8084)
                     /gene="yihA"
                     /locus_tag="ACJFD7_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTP-binding protein
                     YihA/YsxC"
                     /protein_id="HGG0859194.1"
                     /translation="MIISAKFITSLVKFDENLSSNFSEVAFLGRSNVGKSSLINSLCK
                     QKNLAKSSATPGKTQLINFFEVACKRNEEKFNINFIDLPGFGYAKVSKNLKEIWNQNL
                     DEFLKLRTSIKLFIHLIDSRHTHLEIDVNLNDYLKRFLRPDQKILKVFTKCDKLNQSE
                     KAKLKNEFKDSILVSNLNKFGLDSLEDIIINQTLGLDK"
     gene            complement(8081..8542)
                     /locus_tag="ACJFD7_000347"
     CDS             complement(8081..8542)
                     /locus_tag="ACJFD7_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HGG0859195.1"
                     /translation="MVARQIILLLACVSVTWATQIEVKALNFYSDENKGESILSGNVE
                     VIRGDDILNSEKLIIYTDKNRKPIRYEAMQNARFKIVLKGKTYKGSGDKFIYNVIKDT
                     YEINGHAYINELGSNQKLFGDKIIVDRKANIYRVESKDQKPARFVFDLKDK"
     gene            complement(8524..9039)
                     /locus_tag="ACJFD7_000348"
     CDS             complement(8524..9039)
                     /locus_tag="ACJFD7_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859196.1"
                     /translation="MAIKIFGILIALFTITFTILSLQDPYSLNLQTNALNFKNIEAKN
                     LKAYESNASTIKAYYKANSWVRYADRDEFNDFITLNLDFNLSANRLEFFNKDMSKVLF
                     EGNVTYIGSNNVKIISQEVEYQPKDKILHTNTNFKALINGSIINGNTLNYDVKNKILN
                     IQGVNAWLQDK"
     gene            complement(9030..9518)
                     /locus_tag="ACJFD7_000349"
     CDS             complement(9030..9518)
                     /locus_tag="ACJFD7_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HGG0859197.1"
                     /translation="MTELIFLDVDGCLTDGKIIYTSNGEFIKEFDVKDGAAIEAWLKL
                     GKKIAIITGRNCPCVEKRAKDLKIEILYQGIKDKLACAKEILQKLNLDFSQCAAIGDY
                     FNDKALLESVGLSFKPKDGHKDLNVDIVLSKKGGKAAVAQMIEILVEKNHLKEEWNKL
                     WL"
     gene            complement(9524..10351)
                     /locus_tag="ACJFD7_000350"
     CDS             complement(9524..10351)
                     /locus_tag="ACJFD7_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HGG0859198.1"
                     /translation="MQIKTITLKLSAVSLGALFFSGCLGTSFFSSLDNAQVYYPSNDF
                     KSSPSSSGTKGTMKPYTINGKTYYPTVVAVGETADGIASWYGPGFHGKKTSNGETYNQ
                     NALTAAHKTLPMNTILKVTNLNNNRQVTVRVNDRGPFVNNRIIDLSKGAASQIDMIAS
                     GTAPVRLEVIGFGSSNSGNNIVHSNVNYGNSGEIANNGQIYEGGNFMVQIGAFKNPAG
                     AQTIAARYKTYRTYSSTIRTSSVDGLNRVFLTGFRSEDEARDFAASGAFAGAFVVRE"
     gene            complement(10311..11429)
                     /locus_tag="ACJFD7_000351"
     CDS             complement(10311..11429)
                     /locus_tag="ACJFD7_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HGG0859199.1"
                     /translation="MKKILLCFLICFNFLFAQINTPEFYERQMNVLRNLDINPSFISD
                     LIFVQTQQDIKSKHAQTLIDSMQNFSKVTPMIRKILAQQEVPDEILYLAMVESGLKTH
                     SVSNAKAVGVWQFMQPTARNLGLRIDAYVDERRDPVKSTYAATNYLKELKEEFGKWYL
                     ALLAYNCGNGKLRQAIKQAGSDDLSVLLNPDKKYLSLETRNFIRKILTLAFLANDRDF
                     LLDKDASLMNYALSNEFAKVDVPSSASLKEIAKNLNMDLVTFKKYNPQFKHNFTPPGK
                     GYYMYIPLNKVAFFDKNFKAEKLAKVDTTIPMTRTYTVKSGDSLYKIAKNYNISVDEI
                     REFNKIAKNHLSINQKLIIPIKENKNANKNNYTKVVSR"
     gene            complement(11429..12244)
                     /locus_tag="ACJFD7_000352"
     CDS             complement(11429..12244)
                     /locus_tag="ACJFD7_000352"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HGG0859200.1"
                     /translation="MFLNLDFQDGLRIVDTHCHLDSEAFKDDLDETLNRAFKNGIDKI
                     IIPGADIKDLPDAATIAHKYKNIFFAAGVHPYEIDNYDEKILRQYLCDEKCVAVGECG
                     LDYFRFKSDLAEEIQKEKENQKKIFIAQLELAIEFKKPVIIHSREANHDTYEILHGYS
                     KDLVGGVLHCFNASEHLLTLFEDGFYFGIGGVLTFKNAKKLVEILPKIPKDRLLLETD
                     APYLTPEPYRGKRNEPLLTQLVANKMCEVLNLSRKELLEICFNNSEKLFFKGY"
     gene            complement(12235..13479)
                     /gene="cbrR"
                     /locus_tag="ACJFD7_000353"
     CDS             complement(12235..13479)
                     /gene="cbrR"
                     /locus_tag="ACJFD7_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile resistance response regulator CbrR"
                     /protein_id="HGG0859201.1"
                     /translation="MNKKILIIDDNKMLGKLLAKKIQMTLDYEVDIAFGFAEAKELMN
                     NDYFLAFVDLCLPDAPNGEVVDYVIEKKIPAIVLTASGDKATKEKFMDKDILDYIFKE
                     SETCIDEIISSIVKLNQYAKTKVIVAMSKLPERNEIKKILTQRQFNVLAAAHGEEAMS
                     YLNDNNDVKLIIADVNMPVISGFELLTQVRERFSDDELGVILLGDHNDSFEANSFKNG
                     VNEYLFKPLSKESFNCRLDRCLSYMDDKKFLSTYNVLDPVSGVKNYNALIDGIDDYFN
                     EIATKDEEFAFAFLDIDNLQMINDEYGREVGDEVIKICANEIVNETKGRDLVGRYSAE
                     KICILLKNISQERAIKIFSRIRVNIKKAGVLVNLDEVFFTASIGVVFGKSGDKIDSLA
                     DKASKILSQAKDNGKDRVEVCS"
     gene            complement(13585..15108)
                     /gene="recN"
                     /locus_tag="ACJFD7_000354"
     CDS             complement(13585..15108)
                     /gene="recN"
                     /locus_tag="ACJFD7_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HGG0859202.1"
                     /translation="MINRIFMKENLGFKKAELEISKGLTVFTGLSGAGKSVLFKGILS
                     AFSLSESEAKIVEIEVDDKLDLESFGIESEEENVFKLLKEKNTKYFINNQSIAKKSLQ
                     NLSKTFIKYLSAKENNEFGNEKFLNLLDALEMQENTNFVSFLEDFKKDFNAYSQISNE
                     LNAILEEEKKVEELKELARAQIEKISSINPKIGEYEELLILKKKLSKKDKLEEAWSKA
                     ERIFELEKVVIEALNLSEVDASFFSECLNELRVICENQKMEDLDFDVEALLDRIENLS
                     YLIKRYESIENALEVLKQKKYELEHYENLSFEKKELEKKFQELKQKLEEKAQILTQTR
                     KKNLKKLEKCLNNYLKDLYMKDASLTLKENEKISILGKDEIMLDINLAHLKNLSSGEL
                     NRLRLAFIATECNILNTGKGILFLDEIDANLSGKEAMSIAKVLEELSKFYQIFAISHL
                     PQLSSKAHNHFLVEKNGEESKVKKLDQEERIKELARMVSGELVSDEAIEFAKTLFKN"
     gene            complement(15108..15968)
                     /locus_tag="ACJFD7_000355"
     CDS             complement(15108..15968)
                     /locus_tag="ACJFD7_000355"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HGG0859203.1"
                     /translation="MQNKIDHKNIKKIGLVTRPNVSLDKEILKLQSILSIYKVELVLF
                     KESSEILDLPKYGLDDLFKISDFVISLGGDGTLISLCRKACEYDKAVLGIHAGHLGFL
                     TDFKVDEAENFFQAFFQGEFRIEKPYLLSVFLEDKQGKILEKLAFNDVVISKNNQASM
                     AHIEVFRKEKKFNEYFGDGLIVATPAGSTAYNLSANGPIVYTLAQAFILTPVCSHSLT
                     QRPIVLPKGFEIEIMAKDCILCIDGQENYKMNDFKSIKVGLSDKNVALIHPKNRDYFQ
                     ILKEKLHWGN"
     gene            16060..17811
                     /gene="aspS"
                     /locus_tag="ACJFD7_000356"
     CDS             16060..17811
                     /gene="aspS"
                     /locus_tag="ACJFD7_000356"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HGG0859204.1"
                     /translation="MRSHYNTDLGISHVGQSVKLCGWVNSYRDHGGVIFIDLRDRSGI
                     IQLVCDPNDSKEAHEIASNARNEFVLIAEGTIRPRGEGLVNPKLKTGEIEVVVSKLTI
                     ENESAVPPFAIADESVNEELRLKYRFLDLRNPKLYENFALRSKACIAARNSLANMGFL
                     EVETPILTKATPEGARDYLVPSRVHQGEFYALPQSPQLFKQLLMCSGFDRYFQIAKCF
                     RDEDLRADRQPEFTQIDVEMSFCEQKDVIKVAETFLKDIFKACGKEIQTPFRQMQYKD
                     AMENYGSDKPDLRFNLKFIDVIDIFTKSNNEIFANIAKDTKKNRIKAIRVPKGDTIFS
                     KRQMQRFEEFVRKFGAQGLAFIQVKKDGLKGPLCKFFSEEDLNELSKRCELEVGDVVF
                     FGAGAKKTVLDYMGRFRIFLANELNLIDPNALEFLWVIDFPMFEQNDDGSYSAMHHPF
                     TMPKNIDETDLEEISSIAYDVVLNGVELGGGSIRIHKNDIQQKVFKLLNIDEEQQKEK
                     FGFLLDALSFGAPPHGGIAIGLDRLIMLVTGANSIREVIAFPKTQRAQCLMTDAPSPA
                     SNEAMRELGIKLRENIK"
     gene            17808..18386
                     /gene="adk"
                     /locus_tag="ACJFD7_000357"
     CDS             17808..18386
                     /gene="adk"
                     /locus_tag="ACJFD7_000357"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019205 - nucleobase-containing compound
                     kinase activity [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HGG0859205.1"
                     /translation="MKELFLIIGAPGSGKTTDASLIAQADATNITHYSTGDLLRAEVA
                     SGSELGKTIDSFISKGNLVPLDVVINTIVYALKAAPTKTIIIDGYPRSVEQMMEFDKV
                     LSEQNEICLKGVIEVRVSEEVAKERVLGRNRGADDNEEVFYNRMKVYTEPLNEILDFY
                     QKKKLHFIIDGERTIEPIVADMKELIKKIQSI"
     gene            18396..18914
                     /gene="ppa"
                     /locus_tag="ACJFD7_000358"
     CDS             18396..18914
                     /gene="ppa"
                     /locus_tag="ACJFD7_000358"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HGG0859206.1"
                     /translation="MNLSKIKIGDIPNKINAVIEIPYGSNIKYEIDKDSGAIMVDRVM
                     ASAMFYPANYGFIANTLADDGDPVDILVLNEYPIQAGAVIPCRLIGVLIMEDESGMDE
                     KLLAVPNSKIDARYDNIKTYTDLPQATLNKIKNFFETYKILEPNKWVKVQDFKDEKAA
                     IEILEKAIKNYK"
     gene            18955..19452
                     /gene="msrA"
                     /locus_tag="ACJFD7_000359"
     CDS             18955..19452
                     /gene="msrA"
                     /locus_tag="ACJFD7_000359"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HGG0859207.1"
                     /translation="MKNIVLGGGCFWCVEAVFERLKGVINTEVGYSGGNPNPSYESVC
                     NGDGNIEVVKINYDEKQISLLEILTLFFKIHDPTSIDKQGGDIGIQYRSIIFYENEED
                     KILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNPNQGYCQAIIAPKLQ
                     KIQSD"
     gene            complement(19629..20468)
                     /locus_tag="ACJFD7_000360"
     CDS             complement(19629..20468)
                     /locus_tag="ACJFD7_000360"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HGG0859208.1"
                     /translation="MQNILSSFTQEKNVCVFANTLKISIEELEKEFLKQKLKFKKINA
                     YCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSI
                     NLANFMQNTGHLACNEISRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKIL
                     LDAPCSTFAKIGFDLEKSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEEN
                     EEVIENALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDYDGFFIAKLR
                     KLC"
     gene            complement(20497..20880)
                     /gene="ruvX"
                     /locus_tag="ACJFD7_000361"
     CDS             complement(20497..20880)
                     /gene="ruvX"
                     /locus_tag="ACJFD7_000361"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HGG0859209.1"
                     /translation="MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKN
                     LLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLEFDKEICFVDESGTSKEALGYGV
                     ANTRKKDGKLDSLSAFIMIKDYFAL"
     gene            complement(20877..21650)
                     /gene="dprA"
                     /locus_tag="ACJFD7_000362"
     CDS             complement(20877..21650)
                     /gene="dprA"
                     /locus_tag="ACJFD7_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HGG0859210.1"
                     /translation="MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSR
                     RMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITASMAAMPNTIGIFANGLDQIYPR
                     TNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
                     AKLALELNKPLYVLPQRLGESTATNLLLKENKAKLICDFKEFVSEFASIDMNQDEFLE
                     FCKKGVSVDEALKIYGQKVYEYELEGKISIEGLFIRVLA"
     gene            complement(21640..22722)
                     /locus_tag="ACJFD7_000363"
     CDS             complement(21640..22722)
                     /locus_tag="ACJFD7_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HGG0859211.1"
                     /translation="MSKKKLVQIQRYLIIAILFLLCIALALGILVKYQNSQDVSSVKP
                     DYFIDKQEDLISLNKDHYEIGIFQENEFDNNKSVSILEQKIQEIDDLNTSLNEQNLSS
                     VEQNLSLEQNQSLEQNFILKDTNLTQDQNLTFNEDIHLNKISKKPKLAIIIDDMANAS
                     QVRGLKALNLKLNPSFFPPDKNHSETPKLALKFDFYMVHLPLAAINYNKPELDTLNPN
                     DSKERIFKKIKQIKKDFKDLRYINNHTGSLFTSNEEAMKKLYEALKNQNIFFVDSKTI
                     GNSKANKIAKELSIPYIQRDVFLDNEDDVNYVKKQLENAVKLAQKKGFVIAIGHPRKN
                     TFKALEQSKDLLKGVDLVYLSEIYGK"
     gene            complement(22726..23748)
                     /gene="ilvC"
                     /locus_tag="ACJFD7_000364"
     CDS             complement(22726..23748)
                     /gene="ilvC"
                     /locus_tag="ACJFD7_000364"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HGG0859212.1"
                     /translation="MAITVYYDKDCDLNLIKSKKVAIIGFGSQGHAHAMNLRDNGVNV
                     TIGLREGSVSAVKAKNAGFEVVSVSEASKIADVIMILAPDEIQADIFNVEIKPNLSEG
                     KAIAFAHGFNIHYGQIVVPKGVDVIMIAPKAPGHTVRNEFTLGGGTPCLIAIHQDESK
                     NAKNLALSYASAIGGGRTGIIETTFKAETETDLFGEQAVLCGGLSALIQAGFETLVEA
                     GYEPEMAYFECLHEMKLIVDLIYQGGIADMRYSISNTAEYGDYITGPKIITEETKKAM
                     KGVLKDIQNGVFAKDFILERRAGFARMHAERKNMNDSLIEKTGRNLRAMMPWISAKKL
                     VDKDKN"
     gene            23867..25801
                     /locus_tag="ACJFD7_000365"
     CDS             23867..25801
                     /locus_tag="ACJFD7_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNB domain-containing ribonuclease"
                     /protein_id="HGG0859213.1"
                     /translation="MKEFLNSLSYGISSHEVSNEFKQILRELLANHIIKEHKNKYYLN
                     NGFAFGVLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPS
                     AKVILVLKRANETSLVITKRYGEAVLGMNIKTGLSTALKASQKSLKALPLGTVLKIEN
                     ENNNIIEVLGHIDDESIDEKISLALFNKNNEFSDACIKEALANGDSVDASMYENRMDL
                     RALPFCTIDPIHAKDFDDAIYFDTQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIY
                     FPHIAIPMLPHPLSENICSLKPHLDRLAYCFKITLDHENKVIKEELFEGIINSKRRFN
                     YDEVDEILVQKPDLKELSWLYELFEITKNLRKMRLKNAFEFRTEELRMNLDENLSLKS
                     TVFEKDTPSHNLIEDCMLLANKAAAKLIDIGVFRNHLSADTRKIDKLLNELRELGIDV
                     NFKPNLPELIRDIQALADELNLRAEVDKLIIKAQKKAEYSSVNAGHFGLGFDKYSHFT
                     SPIRRYSDLILHRLLKAKQKNDEKLFNYLLLNIESTCENLSTLEREADKVAFDFMDRK
                     FARWAAKNIGKKFKALVVQNDGVCIAKLDDEIKGADIILYDTRVNLLENVEVQIMEAD
                     IVMAKIYAKITQRLIKEENV"
     gene            25794..26759
                     /gene="holA"
                     /locus_tag="ACJFD7_000366"
     CDS             25794..26759
                     /gene="holA"
                     /locus_tag="ACJFD7_000366"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HGG0859214.1"
                     /translation="MYRKELQTLLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDE
                     TLKLFFEEYNFTRASDFLSAGSLFSEKKLLEIKTSKKIPTKDLKVLVELCKNNTDNFF
                     LLELYDESSKQSDIEKIFSPHFVRFFKANGAKEGVELLSIKAKQLGVEITQNALFTLF
                     TSFDENLYLAASELNKFSGLRVDEKTIEQYCYSLNTGSFESFFDKILKKQDFKSELEK
                     ILDNFNEIALINSLYNSFYRLFKIALYAKVNGKIDFKDLLGYTPPPQVGQNLSSQAFS
                     LKIEQYKEIFTLLLKSEYELKTNPKLVKKEFLISNLLKLARILKN"
     gene            complement(26993..30430)
                     /locus_tag="ACJFD7_000367"
     CDS             complement(26993..30430)
                     /locus_tag="ACJFD7_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859215.1"
                     /translation="MNKTALTKTYTKDIQNFCLNSKKIVLSLAAISFSASCTHATLTP
                     EIETYEEANRHAKARSGSRSKSSNNNNKTISSLQNSTQTVSGTGNTLVIESGGTITIS
                     NGSQQAVNFTQGSSTSTFLNQGTLIGGNNAASVQLGANTNNGVSIETFNNKGIIGNGF
                     SQFGVTVWGTNNSKSTINNFSNSGTIYSNTGESIYFGNANISSFVNSGTIKSKQGTGV
                     NISQGTSIGNFNNSGTIEGKSMGVNVRSTIDTFVNSGLITTTVKGNWSDGIQINANVG
                     TLKNTGTIQGFSAPIRSSGGTIESLINEGTMKGESIGIYMRGGLVKTLINQGTINQNN
                     SETWAAGIKLQNNSTIENIINTGSIHSNAFGISVTGGKFGTLTIKDGGQVYGKYAAIG
                     VGQSQTLGDLYIDGSSSNGRVSGIYSEEHGILLENNSQTQKIELKNGGIIKGNIDGIR
                     LINSASLSGEMILSGEGSRVEGGRGAGILNRSGKIEGSIIIKDGATVTATSNRAIANS
                     RSGSITGGITVSGKNTKLQGNIINMGNASIGSDIKIEDGAKVEGGLVNQGKGSISGSV
                     QVSGGSSIDSITNEGNGAISGSITVDKNSKLDSITNTSTSSTGISGSITNNSDNKLEI
                     SNSGNIGGKIESTGSADMVISNSNGGTISGGISSSGSGSTSISNSQGSTINNGITVSG
                     SAQVEISNQGSIGKDKNGNTVTNNGSGSVGIKDWLVSTDKNTGKLNTVVIGGSGKDNV
                     KVENITVDQSNVDLDELDNINHIISGVNQGNIGNIGTNGGGEISLSFDPITGKLTTDF
                     NLNASISGATFRSLISTTSRRSTFIDNVMGNSMQSFALASSSKSQSIAMSEKGNLYAD
                     ASDYIKSDLNNGSYGSNKEHSLFILPYTSSQNVELSLNEESKGHAKGTIIGYSTLKDS
                     GIYGVYAGYEDRKMGSTYFDINNRTYYAGLKYFNTLFTTEKGQEVYIKAQGKAALIKN
                     DLTKKIGNNEAKAEPNSYAYGVNTALGMNFISNKDIFSPEIGLAYEGGYTEAFSMKDT
                     IGQATVKGGERTYANYLNLFSTKTSLTWFRDWLPNLKTSVELGAKFNINPKVEAEARF
                     GNIKVSDEFDLPRVQKFVSTSFIVPVNEAFYFSLNYNGMFDKDGNTHTGFAQFNYLW"
BASE COUNT        10483 a         5112 c         4140 g        10703 t
ORIGIN      
        1 aaaaaagaaa ggtattggga agtgactaaa caagaaatac aaaaactcga tacaaattta
       61 ctaggtcatc ccaagccttt attctctcta tcaatggtag aactttggga aagatttgct
      121 ttttatggca tacgatcttt acttgtgctt ttcatggcaa caaccataag caaaggtgga
      181 cttggaataa gcactgaata cgcctcggca atttatggca tttttgcagg atgcttgtat
      241 ttagcagcac ttcctggagg ctggattact gataattatt tagggcaaaa aaaggcttta
      301 tttttaggtt cttttattat agctttagga catattagca tagccttatc tattttaagc
      361 acacctatat ttttcctagg acttctttta tcgttattgg tactggattt tttaaaacta
      421 gcgcttctgt aacagttgga atgttgtata aacaaaatga tacaagatgc gatactggct
      481 atacgatttt ttatatagga attaacattg gagcattcat tgctcctctt atatgtggtt
      541 ttgttcaagc aaaatggaat tatcatttag gatttggcta ggaggtttag gtatgctaat
      601 ctctttgctt attttatatt ttaaagctgt ccctgagctt gaagaatttc ataaaaattg
      661 caccttaaag caaaactggg aacaaccatt taaaaaagta aaaaatttaa ctcttatact
      721 aagtataagc ttgttaagta ttattggatt ttttctaatg tttattaatc ttgtaaatat
      781 taatcccata taatactatc aaaaaaactt ctaattgtaa ttttactatg cttggtaatt
      841 tatttcatat atctttttgt ttttaaagcc ttaaataaaa gagagaaaca acaattaata
      901 attttaattg ttttattctt tgcagccact ttttttggag tacttttaaa caaaaaccct
      961 accgcttata atctttttgc gcaagatttt acaaatagaa atatttttga ttggaaaatt
     1021 ccaacaaact ggtttcaatc ttttaatcca atttttatca tcatacttgc tcctatagca
     1081 agttatattt ggatattttt agagaaaaaa atatatattt ttcttccatt ggaaaattta
     1141 ctttaggaat attatttgcc ggtattggct ttatgatgat gacctttgct tcacaaaatc
     1201 taataaacaa caatggttta ccaatatcca tggcttggat tatcataagt atattctttt
     1261 taacacttgg ggaactatgc gtgtctccta ttggactctc tataatggct aaggttgccc
     1321 ctgatttaat caaaaatcaa atcatgggac tttggtttgt agcaagtgcg cttggaaatt
     1381 ttgttgcagg acttatagga ggaaatgtca atattaaaaa catcgatcaa cttcctaata
     1441 tttttagaca atgcatgtgg atgctttttg ttgtagcact tttgcttttt attgctaaaa
     1501 aaccatctta acaaaaaaaa taagcaatta tctaactaaa cttaaaatac aaaatacatc
     1561 aaagttgaaa attgatctta atatttcttt tttttatatt tgcaaaaaag taacattatg
     1621 atataaatca tttaaaaata ttacaaagtt atacatattt tttaatttct tgtctataat
     1681 ttataaataa aaatacacaa aggatataaa ttgagtaaaa atgtaaaaaa tttagatact
     1741 tcattttttg gacatccaaa accactttta tctctttcac ttactgagct ttgggaaaga
     1801 ttttcttttt acggaattcg tcccttgctt taccttttta tgatagcaag ttttgaaaaa
     1861 agtggaatga acttaaaacc tgaagaagca agtgcaatta tgggaatttt tgcaagttgt
     1921 ttatatcttg ctgctttgcc aggtggatgg cttgcggaca attacttagg acaaaaaaga
     1981 gcaattttac taggtgctct aactatagca tttggacatt tgtgcatagc cttttcttat
     2041 tttaacaata aaatgatttt tgttggtatg gtttttttgg ttataggtac aggacttttt
     2101 aaaacttgtg cttctgtaat ggttggaatg ctttataaaa aaaatgatgc aaggcgtgac
     2161 tctggtttta ctctttttta tatgtgcttt aattttggtg cttttgtagc tcctttaatt
     2221 tgcggctttt tacaaaaaga atacggatgg cattttggtt ttggtgcagg tgggattggt
     2281 atgcttttag cggtaattat tttctaccta aaaactatgc ctgatttaaa agaatttgat
     2341 gaaaaagttg gcatagactc tacttgggat agaccaagca aaaaaagcaa aaacgcattt
     2401 tacatcatca ttgtatcagg tattgttttg cttggagcaa tatttttaat ccttggtggt
     2461 tttataaaat tagatgcaca agttattaat aaaaatatta ttctaactat cttagcttgt
     2521 gctggaattt attttttata tcttttcgct tttacttctt taaaaataga agaaaaaaga
     2581 aatttaatta tttttattgt tttattttta gcggctgcgt tattttggtc agtatatgag
     2641 caacaataca cttcttttaa tttttttgca gaaaaattaa tagataaaac catattaaat
     2701 tatgaaattc ctacaatatg gtttcaatct cttggaggtt tatttgttat actttttgca
     2761 ccttttagtg cttttatatg gactatatgt gccaaaaata ataaagaaat ttcatctatt
     2821 attaaatttg cattaggact tttgggtgca gctttggcat ttttaataat ggctttagct
     2881 tcaaatcatg caattagttt aaatggcgat gctaatacat taagagaaaa tttagaaaat
     2941 tcatcacaaa ttattttagt ttcaccttgg tggcttgtca gtagcttttt gcttatggtt
     3001 ttaggagagc tttgcctttc ccctgtggga ctttctataa tgacaaaaat tgcacctaat
     3061 ttaattaaat ctcaagtcat gggactttgg tttgtagcaa gtgcattagg caatgcttta
     3121 gctggattca taggtggtaa agcaagtgaa gaaaatatag cttatttgcc aaatttattt
     3181 taccaatgta tgtggatatt acttggtgct gttataattt tacttatact caaaaaacct
     3241 atcaataaaa tactaaaaaa ttaatattaa ggagaaaata tgagtattta caaacaaaga
     3301 gtattagaac ttagaagatt aatgaaagaa aataatattg acgcctatct catcttaagc
     3361 gcggatccgc atttgagcga atatttacca gaatattaca aaaacagagt ctttatcagt
     3421 ggctttaagg gttctgttgg aacagttctt atcacacaag aagagggctt tttgtgggta
     3481 gatggaagat attggcttca agcacaaaag gaattagaag gtagtggcat acttttacaa
     3541 aagcaagatg ctaaaaatac ttttaccaaa tggttggaaa aaaatttaag cgaagatcaa
     3601 attttaggca tcgattttgc acttttacct ttatctttgc aaaaagattt aaagattaat
     3661 tgcaaggcaa atttaaaaca tatagatttg ataagtccac tttggaaaga tcgtcccact
     3721 ttaccacaag aaaaaattta tgaacacgaa ctagaatact gctcttactc aagaaaagaa
     3781 aaattagcat tagtgcgtca aaaaatgaaa aatttaaatg ttacctctca tttaatctcc
     3841 agccttgatg atatagcttg gcttacaaat ttaagaggga atgatgtaaa ttataatcct
     3901 gtatttttaa gtcatttgct aatcttggaa gacaaagcct tgctttttgt tgatcagaaa
     3961 aaagtaaatt cagaacttga aaaaaaatta aatttagatg ggttttggct taaaaattat
     4021 gatgaaatca tcatggagct tgaaaaactt gcaaatacaa atttgcttat tgaaccttca
     4081 aaaatgaccg ctttactcat aaattcttta gataaaagcg taaaaatcat tcaagaaatt
     4141 aatccaagca ctcacttaaa agcagctaaa aatacaaaag aaatagcgca tatacaagat
     4201 gctatgatag aagatggagt ggctttatgt aaattttttg cctggcttga agaagcgata
     4261 gaaaataaag aactaataag cgaattagac atagatgtta aagcaagcga atttagagca
     4321 caaagcaagt actacataag tgatagtttt gccactatag caggttttaa cgaaaacgca
     4381 gcatatccac attataaagc cacaaaagag agttttgctt atcttaaaaa agatgggctt
     4441 ttacttattg attctggtgg acaatataaa aacggcacaa cagatattac acgcgttgta
     4501 ccaataggaa aggctaatgc agaacaaatt catgactata ccttggtttt aaaagcacat
     4561 attgccattt ccagtgcaat ttttccaaaa gatatagcta tgcccttact tgatgcaatc
     4621 acacgcgcac ctttatggaa agaacaaatt gactatatac acggcacagg acatggcgtg
     4681 ggatattttt taaatgtcca tgaaggtcca caagttttat cttatctatc ccctgtgctt
     4741 gaaaaaacaa aagccaaaga aggtatgcta acctccatag aaccaggtat ttataaagta
     4801 ggtaaatggg gtataagact tgaaaattta gttattcata ccaaagtaga aaatcctaaa
     4861 aataaagatt ttggagagtt tttatacttt aaacctgtta ctctttgtcc ttttgaaata
     4921 tcttgtattg atacaaaaat gttagatgaa aaagaaaaag agtggttaaa caattaccac
     4981 aaagaagtat ttaaaaaact ttctcctaag ctaggtgatt atccaaaagc tctagtttgg
     5041 cttgaaaaaa gaacaaaagc catcttttaa gatacttttg ttaatataga taaattttcc
     5101 ttgtattaaa cttataattt atttaataca aggtttttaa accaattgct aaaaaagttt
     5161 tttttgaaaa actcaattta caactaaaaa ttatttaaaa tatccaagat caatcatttt
     5221 ttgataaatt ttagctacag ttgcccctga agtaatattt ctcccaccat gctccaaaag
     5281 aacggtaact acatattttg gcttagaata aggagcataa gaagtaagcc acgcatgaga
     5341 tctagtataa tactcaaatt gtttttcatc gaccctattt ttatctgttt gtgaaaatcc
     5401 cacaacctga gcggttcctg tttttgctgc aactttcaca tcaagattat gcaaataacg
     5461 ataagaggtt cctccttgct cattggcaac ggcatacatt gcatctctta tataaggcaa
     5521 ttgactcttt tcaaataaag taaaaatttc ttttttattt tcatccattt gattttctat
     5581 agttgtatta ttattttcta tgctttttaa aaaatgaggt ataacctctc caccttttgc
     5641 gatttgagcc gtatatctag caatttgcat aggtgttgca agaaaattac cttgacctat
     5701 agctgtattt aaagtatcac cttgaaacca agattgtcta tatctttgca tcttccattc
     5761 tttgcttggt aaagttccta caaattcact aggtaaatct acccctgttt tcgctccaaa
     5821 gccaatgcga gataaagttt cacttatttg atcgattcca acttgcaaac tgccattata
     5881 aaaataaaca tcacaactat attttatcgc atgttttaaa tccacaggtc catggcctga
     5941 tcgattccaa catctaaaaa acctgcctcc aagctcaatg cttccattgc aaacatattg
     6001 agtcgacggg ctaatatttt tagaatttaa aaaagaaagc cctactccca tttttacaac
     6061 agaacctgga ggataatatc catttataag tttatttgta aaaggatgat caagactatt
     6121 tgaaagctca tcccaatcct taaaagaaat ccctgttaca aaaggattaa gatcatattc
     6181 agggaaactc cctgcagcta aaatagatcc atcatttaca ttcataatta tagcagctcc
     6241 agcattccct tcaaacaatg aagttaaata agactgaagc tctatatcta tcgtaagttc
     6301 tatatcatta gacatagcag gagtgtaaga aagctgttct acttcttgat ttaaggcatt
     6361 aaccttataa accctagttc ctttttctcc ttgtaaaata tcattataat agcgttctat
     6421 accgcttttt cccgtatagt tagaaagttt tgctatttca ttttcttgaa catcttgtaa
     6481 atttgcctta cctacatacc caataatatg cgaagccaat tttccaaaag gatattttct
     6541 ttttacaaca ggatctattt ttattgtttt attaagattt aactctgaat aatgcggaat
     6601 aatctcatcg tagggtataa aatctacaac tttaataaaa tcttgattat agtaagaatc
     6661 atttctctta taaatttctg ctaatttact agcatttaaa tcaggaaata aatttgtaag
     6721 ttcagataat tctttatcta aaattccttt atttgacttt ttaatactta aataaggttt
     6781 aatagaaata ctaaaaccca aatcattaat agccaataaa gttccatttc tatctgtaat
     6841 ttgaccccta acaggtggta aaaattcagt ttttatggca ttttgtttag caagctcttc
     6901 ataatataca tttgatttta tactcaaata atacacacga cttaataaaa atataaaaaa
     6961 caatagtata aatccaacaa ctagacgcat tctcatttaa attttacctt taaaaaacac
     7021 ataagctaaa caacattcta taaaaactga aacaatatac gcccatccta aaattttaat
     7081 tttttcatct ccaatataaa acaatatcat atccaaaaac aaaataatgc cgtaagcaca
     7141 aagcacaaaa acaacaggga taaatttacc aatttttaaa tttgtcttaa tccaatctgc
     7201 acaaagataa taaaaaataa aaaatgccaa ccaagatgaa aaaataaaaa aattataagt
     7261 tatatcagta aaaaataaaa aaaataaaga aaaataccat ctaaaatcaa gctttgaaaa
     7321 agttctctct ctctcttcta ataagcaaaa catataacag aaaaaaatcc cataaagtaa
     7381 cggggtatat acaaaagtcg aaccaagaat ctgataaatt agaaaaaaaa atcctaaaaa
     7441 gacataagct ccattaaatt ttgctttata agcacttaaa tttcttctca tttatcaaga
     7501 cctaaagttt gattgataat aatatcttct aaagaatcaa ggccaaattt attcaaattt
     7561 gaaactaaaa tagagtcttt aaattcattt tttaacttag ctttttcact ttgatttaat
     7621 ttatcgcatt tggtaaaaac ttttaaaatt ttttgatcag gtcgtaaaaa tcttttcaaa
     7681 tagtcattta gatttacatc gatctctaaa tgagtatgtc ttgagtcgat taaatgtata
     7741 aataacttta tcgaggttct taattttaaa aattcatcta agttttgatt ccatatttct
     7801 tttaaatttt tagaaacctt tgcataacca aaccctggta aatcgataaa attgatatta
     7861 aatttttctt catttctttt gcaagctact tcgaaaaaat ttataagctg agtttttcca
     7921 ggagttgccg aacttttggc taaatttttt tgtttacaca aagaattgat taaagaactt
     7981 tttccgacat tagaacgccc caaaaatgct acttcactaa aatttgagct caaattctca
     8041 tcaaatttca ctaaagaagt gataaattta gcactaatta tcatttgtct ttaagatcaa
     8101 acacaaaacg agcaggtttt tgatccttac tctccactcg ataaatatta gcttttctat
     8161 cgactattat tttatcacca aaaagttttt gattgcttcc aagctcattt atataagcat
     8221 gaccattaat ctcgtaagta tctttaataa cattataaat aaatttatct ccactacctt
     8281 tataagtttt accttttaaa acaatcttaa acctagcatt ttgcattgct tcataacgaa
     8341 taggtttgcg atttttatcc gtataaataa tcaatttttc agaatttaaa atatcatcac
     8401 ctctaattac ttctacattt ccactaagaa tactttcacc cttattttca tctgagtaaa
     8461 aatttaaagc ttttacttca atttgagttg cccaagttac acttacacaa gctaacaata
     8521 aaattatttg tcttgcaacc acgcatttac tccttggata tttaaaattt tgttttttac
     8581 atcatagttt aaagtatttc cgttaataat acttccattg atcagagctt taaaattagt
     8641 atttgtatgt aaaattttat ccttaggttg gtattctacc tcttgagaaa taattttgac
     8701 attattagaa cctatataag taacatttcc ttcaaacaaa accttgctca tatctttatt
     8761 gaaaaactct aaacgattcg cactaagatt aaaatctaaa tttaaagtaa taaaatcatt
     8821 aaattcatct ctatctgcat atctcaccca agaatttgcc ttataatatg ccttaattgt
     8881 actagcatta ctctcataag ctttcaaatt tttagcctca atatttttaa aatttaaagc
     8941 attagtttgc aaattcaaag aatatggatc ttgcaaactt aaaatcgtaa aagtaattgt
     9001 aaaaagagca attaaaattc caaaaatttt tatagccaaa gcttattcca ttcttctttt
     9061 agatgatttt tttctactaa aatttctatc atctgtgcta cagcagcctt accacctttt
     9121 ttgctaagca ctatgtctac atttaaatct ttatgaccat cttttggctt aaaactaagt
     9181 cctacacttt caagtaaagc cttatcatta aaataatccc caatagccgc acactgagaa
     9241 aaatctaaat taagtttttg taaaatttct tttgcacaag ctaacttatc tttgatacct
     9301 tgatataaaa tttctatttt taaatcttta gctctttttt caacacaagg acaatttcta
     9361 cctgtaataa tagcaatttt tttaccaagc tttagccaag cctcgatagc cgctccatct
     9421 tttacatcaa attctttaat aaattctcca ttagaagtat aaataatttt tccatcagtt
     9481 aaacagccat ctacatccaa aaaaatcaat tctgtcataa tttttactct cttacaacaa
     9541 atgcacctgc aaatgcacca cttgcagcaa aatcccttgc ttcatcttca cttctaaagc
     9601 ctgttaagaa aacgcgattt aacccatcca ctgaacttgt gcgtatagta gagctataag
     9661 ttctataagt tttatatctt gctgctatcg tttgtgctcc agctgggttt ttaaaggctc
     9721 caatttgaac catgaaattt ccaccttcat aaatttgtcc attatttgca atctctccac
     9781 tatttccata gtttacatta gaatgtacaa tattattacc cgaattactt gatccaaacc
     9841 ctataacctc aagccttact ggagctgttc ctgaagcaat catatcaatt tgactagcag
     9901 ctccttttga taaatctata atacgattat ttacaaaagg acctctatca ttcacacgaa
     9961 cggtaacttg acgattgtta tttagattgg ttacttttaa gatggtattc ataggtaaag
    10021 ttttatgagc cgcggttaaa gcattttgat tataggtttc gccattagag gttttcttgc
    10081 cgtgaaagcc tggcccatac caactcgcaa taccatcagc agtttcgcct actgctacaa
    10141 cagtaggata ataagtttta ccgttgatag tataaggctt catcgttcct ttagtccctg
    10201 aagaactagg actgctttta aaatcatttg aaggataata cacttgagca ttatccaagc
    10261 tagaaaaaaa actagtgcct aaacaaccac taaaaaataa agcccctaga ctaacggctg
    10321 acaactttag tgtaattgtt tttatttgca tttttattct ccttgattgg tataattaat
    10381 ttttgattaa tgctaagatg attttttgct attttattga attctcgaat ttcatcaaca
    10441 cttatattat aattttttgc tattttatat aaagagtcac cagacttaac ggtataagtt
    10501 cttgtcatag gtatagttgt atcaaccttt gcaagttttt ctgctttaaa atttttatca
    10561 aaaaatgcta ctttattaag tggtatatac atataatacc ctttaccagg aggcgtaaaa
    10621 ttatgtttaa attgtggatt atatttctta aaagttacaa gatccatatt taaattttta
    10681 gctatttctt ttaaagatgc agaagaaggc acatcaactt ttgcaaattc attgcttaaa
    10741 gcataattca ttaaagacgc atctttatct agtaaaaaat ccctatcatt agctaaaaaa
    10801 gcaagcgtta aaatctttct tataaaattt ctagtttcta aagaaagata tttcttatca
    10861 gggttcaata aaacacttaa atcatcactt cctgcttgct tgatagcttg tcttagcttg
    10921 ccatttccgc aattataagc taaaagtgcc aaataccatt tgccaaattc ttcttttagc
    10981 tcttttaaat aatttgtagc ggcataagtt gacttgactg gatcacgcct ttcatcaaca
    11041 taagcatcga ttcttaaacc caaatttcta gctgttggtt gcataaattg ccaaacccct
    11101 acagccttgg cattagaaac gctatgagtt ttcaagcctg attcaaccat agctagatac
    11161 aaaatctcat caggaacttc ctgctgggct aaaatttttc ttatcatagg agtaactttt
    11221 gaaaaatttt gcatgctatc tattaaagtt tgagcatgtt ttgattttat atcttgttga
    11281 gtttgcacaa aaatcaaatc actgataaaa cttggattaa tatctaaatt tcttaaaaca
    11341 ttcatttgtc tttcataaaa ttcaggagta ttaatttgtg caaaaagaaa attaaaacat
    11401 attaaaaaac acaataaaat ttttttcatt aataaccttt aaaaaataat ttttcagaat
    11461 tgttaaaaca aatttctaga agttcttttc ttgataaatt caatacttca cacattttgt
    11521 ttgctaccaa ttgagttaac aaaggttcat ttcttttacc gcgataaggc tctggagtaa
    11581 gatatggagc atcagtttca agtagtagtc tatcttttgg aattttaggt aaaatttcaa
    11641 ctaatttctt agcattttta aaagttaaaa ctcccccaat accaaaataa aatccatctt
    11701 caaaaagagt tagtaaatgt tcgcttgcat taaagcagtg taaaactcct cctacaagat
    11761 ccttagaata cccatgtaaa atctcataag tatcatgatt tgcttctctt gagtgaatga
    11821 taacaggttt tttaaattca atagcaagtt caagctgtgc gataaaaatc tttttttgat
    11881 tttctttttc tttttgaatt tcttcagcaa gatcactttt aaaacggaaa taatcaagcc
    11941 cacattcacc tacagctaca catttttcat cgcataaata ctgccttaaa attttctcat
    12001 cataattatc aatttcataa ggatgcaccc ctgctgcaaa aaaaatgttt ttatatttat
    12061 gagcaattgt agctgcatca ggtaagtctt ttatatcagc accaggtatg ataattttat
    12121 ctataccatt tttaaaagca cgatttaaag tttcatctaa atcatcttta aatgcttcac
    12181 tatctagatg gcaatgagta tcaacaatcc ttaaaccatc ttgaaaatca agatttaaga
    12241 acatacttca actctatcct tgccattatc ttttgcttga gacaatattt tacttgcttt
    12301 atcagccaaa gaatcaatct tatctccact ttttccaaaa accacgccta tagaagctgt
    12361 aaaaaagact tcatctaaat taactaaaac accagccttt tttatattta ctcgtatacg
    12421 agaaaagatt ttaatcgctc tttcttggga tatattttta agcaaaatac aaattttttc
    12481 tgcactatat ctacctacaa gatctcttcc tttagtttca ttgactattt cattggcgca
    12541 gattttaatt acttcatcac caacttcacg gccgtattca tcgttaatca tttgaagatt
    12601 atctatatct aaaaaagcaa aagcaaattc ctcgtctttt gttgctattt cgttaaaata
    12661 atcatctatt ccatcaatta aagcattata atttttaacc ccagatacag gatctaaaac
    12721 attataagtg cttaaaaatt ttttatcatc catgtaagat aaacaacgat ctaagcgaca
    12781 attaaaactt tccttgctta aaggcttaaa caaatactca ttaactccat ttttaaaaga
    12841 attcgcttca aatgaatcat tatgatcccc caaaagaatc acacctaatt catcatcact
    12901 aaaacgttct cttacttgag tcaaaagctc aaaaccgcta attactggca tattgacatc
    12961 tgctataata agcttaacat cattattatc atttaaataa ctcattgctt cttcaccatg
    13021 agccgcagct aaaacattaa attgtctttg agtaagtatt tttttaattt cattacgttc
    13081 aggtagcttg ctcatagcta caatcacttt agtttttgca tattgattaa gttttacaat
    13141 agaactaata atctcatcaa tgcaagtttc actttcttta aaaatataat ctaatatatc
    13201 tttatccata aatttttctt tagtagcctt atcaccacta gccgtaagaa caatagcagg
    13261 aattttcttt tctataacat aatccacaac ttcaccattt ggggcatctg gcaagcataa
    13321 atccacaaaa gctaaaaaat aatcattatt cattaactcc ttagcttcag caaaaccaaa
    13381 agcaatatct acctcataat ctaaagtcat ttgaattttt ttagccaaaa gtttgccgag
    13441 cattttattg tcatcaataa ttaaaatttt cttattcata gtgtgtaaaa tacctttata
    13501 tctaaaattt tttattatat ttgtttcaaa agaaaggaaa tttttatagt tatatatttt
    13561 aacatagcaa aataaaaaat ccgcttaatt cttaaataag gtcttagcaa attcgatcgc
    13621 ttcatcacta acaagctctc cacttaccat cctagcaagt tctttaattc tttcttcttg
    13681 atcaagcttt tttaccttac tttcttcacc atttttttca actaaaaaat gattatgtgc
    13741 cttagaggaa agttgaggca aatgagaaat agcaaaaatt tgataaaact tagaaagttc
    13801 ctctaaaacc ttagctatac tcatagcctc ttttccgctt aaatttgcat caatttcatc
    13861 taaaaataat atccctttgc ctgtatttaa aatattacat tctgtggcta taaaagcaag
    13921 tcttaagcga tttaattcac ccgaacttaa attttttaaa tgagctaaat taatatctag
    13981 cattatctca tctttgccta aaattgaaat tttttcattt tctttaagcg tcaaacttgc
    14041 atctttcata taaagatctt taagataatt atttaaacat ttttctaatt ttttaaggtt
    14101 tttctttctt gtttgagtta aaatttgtgc tttttcttct aatttttgtt ttaattcttg
    14161 aaattttttt tcaagttctt ttttttcaaa acttaaattt tcataatgct ctagctcata
    14221 ttttttttgt tttaaaactt ctaaagcatt ttctatgctt tcataacgct tgataagata
    14281 ggataaattt tcaatgcgat ctaaaagcgc ctccacatca aaatccaaat cttccatttt
    14341 ttgattttcg caaatcacac gcaattcatt taaacattca ctaaaaaaac tcgcatcaac
    14401 ttcgcttaaa tttaaagctt caataacaac tttttcaagc tcaaaaatac gctctgcctt
    14461 actccaagct tcttctaatt tatctttttt agaaagcttt tttttaagta ttaaaagctc
    14521 ttcatactca cctattttag gattaatgct tgaaattttt tcaatttgtg ctctagctag
    14581 ttcttttaat tcttctactt ttttttcttc ttctaaaatt gcattaagct cattagaaat
    14641 ttgactataa gcattaaaat cttttttaaa atcttctaaa aaggaaacaa aatttgtatt
    14701 ttcttgcatc tccaaggcat ctaagagatt taaaaatttt tcatttccaa attcgttatt
    14761 ttcctttgcg cttaaatact taataaaagt tttacttaaa ttttgcaaac tttttttcgc
    14821 tatgctttga ttgttaataa aatattttgt gtttttttct tttaagagct taaaaacatt
    14881 ctcctcttca ctttctatac caaaactttc taaatccaac ttatcatcta cttctatttc
    14941 gacaatttta gcctcacttt cactcaaaga aaatgcggat aaaattcctt taaacaagac
    15001 cgattttcca gctccactta ggcctgtaaa aacggtaagc cctttagaaa tttcaagctc
    15061 agccttttta aaaccaagat tttctttcat aaaaattcta tttatcatca atttccccag
    15121 tgtaattttt cttttaaaat ttgaaaataa tccctatttt ttgggtgaat taaagccaca
    15181 tttttatcac ttaaacccac ttttatactt ttaaaatcat tcattttata attttcttgc
    15241 ccatcaatgc aaagtataca atcctttgcc ataatctcta tttcaaaacc ttttggtaag
    15301 acaatagggc gttgtgttaa agaatgagaa caaacaggag ttaagataaa agcttgagct
    15361 aaagtataaa ctatgggccc atttgcactt aaattataag ctgttgaacc cgcaggagtt
    15421 gcaacaataa gcccatctcc aaaatattca ttaaatttct tttcttttct aaaaacttct
    15481 atatgagcca tagaagcttg attgttttta ctgatgacca catcgttaaa agctaatttt
    15541 tctaaaattt ttccttgctt atcttctaaa aaaacactta acaaataagg cttttctatt
    15601 ctaaattctc cttgaaaaaa agcttgaaaa aaattttcag cttcatcaac tttaaaatct
    15661 gttaaaaaac ctaaatgtcc agcatgaatt cctaaaactg ctttatcata ttcacaagct
    15721 ttacgacata aagaaatcaa agttccatct ccacctaaag aaataacaaa atcagatatt
    15781 ttaaacaaat catccaatcc atactttggc aaatctaaaa tttcagaact ttctttaaac
    15841 aatacaagtt caactttata tatagataaa atcgattgaa gttttaaaat ttccttatct
    15901 aaactcacat tgggtcgtgt aacaagtcca atttttttaa tatttttatg atctatttta
    15961 ttttgcataa aaaattatat caaatcttag caaagcaaaa gaataaaaat actataattt
    16021 tgctcattat cttaaaaaat cttttttcaa ggaataaatt tgcgaagtca ttataataca
    16081 gacttgggaa tttcccatgt tggtcaaagc gttaaacttt gcggttgggt aaatagctac
    16141 cgcgatcatg gtggagttat ttttatagat ttaagagata gaagtggtat tatccaactt
    16201 gtttgtgatc caaatgatag caaagaagct catgaaatcg cttccaatgc aagaaatgaa
    16261 tttgtactta ttgcagaagg cactattcgt ccgcgtggtg aaggacttgt aaatcctaaa
    16321 ttaaaaacag gagaaatcga agtagttgtt tctaaactta ccatagaaaa tgaaagtgcc
    16381 gtacctcctt ttgctatcgc tgatgaaagt gtaaatgaag aattacgctt aaaatatcgc
    16441 tttttagatt taagaaatcc taaactttat gaaaattttg ccttgcgttc taaagcttgt
    16501 atagcagcta gaaattcttt ggcaaatatg ggatttttag aagttgaaac ccctattctt
    16561 accaaagcta ctcccgaagg cgcaagagat tatctcgtgc cttctcgtgt gcatcagggt
    16621 gaattttatg ctcttccaca aagccctcag cttttcaaac aacttttaat gtgtagcggt
    16681 tttgatcgtt attttcaaat tgcaaaatgt tttagagatg aagatttaag agctgatcgc
    16741 caacctgaat tcacacaaat tgatgttgaa atgagctttt gcgaacaaaa agatgtgatc
    16801 aaggtagctg aaactttttt aaaagatatt ttcaaagctt gcggcaaaga aattcaaacc
    16861 ccttttagac aaatgcaata caaagacgct atggaaaatt atggctctga taagccggat
    16921 ttaagattta atcttaaatt tattgatgtg attgatattt tcactaagtc aaataatgaa
    16981 atttttgcaa atattgccaa agatacaaag aaaaatcgca tcaaagccat acgcgttcca
    17041 aaaggcgata ctattttttc aaaaagacaa atgcaaagat ttgaagaatt tgtgcgtaaa
    17101 tttggcgccc aaggcttagc tttcatacaa gttaaaaaag atgggcttaa aggtccactt
    17161 tgtaaattct ttagcgaaga agatttaaat gagctaagca aacgctgtga gcttgaagta
    17221 ggagatgtgg tatttttcgg tgcaggagct aaaaaaaccg tgcttgatta tatgggaaga
    17281 tttagaattt tcttagccaa cgagttaaat cttatagatc caaatgcctt agaattctta
    17341 tgggttattg attttcctat gtttgagcaa aatgatgatg gaagttattc tgcgatgcac
    17401 catcctttta ccatgccaaa aaatattgat gagactgatt tagaagaaat ttcatctatt
    17461 gcttatgatg tagtgttaaa tggcgttgag ctaggtggag gtagtataag aatccataaa
    17521 aacgatattc aacaaaaagt atttaaactt ttaaatatcg atgaagaaca acaaaaagaa
    17581 aaatttggtt tcttgcttga tgctttaagt tttggtgctc caccacatgg aggtatcgct
    17641 ataggacttg atagactcat catgctagtt acaggagcaa acagcataag agaggttata
    17701 gcctttccaa aaacccaaag agcgcaatgc ttaatgacag atgcgccatc gcctgctagc
    17761 aatgaagcaa tgagagaatt aggaatcaaa ttaagggaga atataaaatg aaagaattgt
    17821 ttttaatcat aggtgcacca ggtagtggaa aaactaccga tgctagttta atcgcacaag
    17881 cagatgcgac aaatatcaca cactattcaa caggggatct tttaagagct gaagtagcaa
    17941 gcgggagtga gcttggaaaa actatagata gttttatctc caaaggcaat cttgttcctt
    18001 tagatgttgt tataaatact atagtttatg ctctaaaagc tgctccaact aaaactatca
    18061 tcatcgatgg ctatccaaga agcgtagaac aaatgatgga atttgacaag gttttaagtg
    18121 agcaaaatga aatttgtctt aaaggtgtca tagaagtaag agtaagcgaa gaagttgcca
    18181 aagaaagagt tttaggcaga aatcgtggtg cagatgataa tgaagaagtg ttttataata
    18241 gaatgaaagt ttatacagaa cctttaaatg aaattttaga tttttatcaa aagaaaaaac
    18301 ttcattttat tatcgatggg gaacgcacta tcgaacctat cgttgcagac atgaaagaac
    18361 tgattaaaaa aattcaaagt atataaggag aaaaaatgaa tttaagcaaa atcaaaatcg
    18421 gagatattcc aaataaaatc aatgccgtaa tcgaaattcc atacggctca aatatcaaat
    18481 acgaaatcga taaagatagt ggtgctatca tggtagatcg cgttatggct agtgcgatgt
    18541 tttacccagc aaactatggt tttattgcca atactttggc tgatgatggt gatcctgtgg
    18601 atattttagt gcttaatgaa tatcctatcc aagctggagc cgtgattcct tgccgcttaa
    18661 tcggtgtttt aatcatggaa gatgaaagtg gaatggacga aaaacttctt gcagttccaa
    18721 attcaaaaat agatgcgaga tatgataata taaaaactta tacagactta ccacaggcaa
    18781 ctttgaataa aatcaaaaac ttctttgaaa cttataaaat tttagaacca aataaatggg
    18841 ttaaagtgca agatttcaaa gatgaaaaag ctgcaattga aattttagaa aaagcaatca
    18901 aaaactacaa ataatcctag cccttcaaag ggctaaactc aaggaaaact cgcaatgaaa
    18961 aatatcgttt taggtggtgg ttgtttttgg tgtgttgaag ccgtatttga acgcctaaaa
    19021 ggtgtaatca atactgaagt tggatatagc ggaggaaatc caaatcctag ctatgaaagc
    19081 gtgtgtaatg gtgatggcaa catagaagtt gtcaaaataa attacgatga aaaacaaatc
    19141 tctcttcttg aaatcttaac actctttttt aaaattcatg atccaacaag tatagataaa
    19201 caaggtggag atattggtat acaatatcgc tcaataatct tttacgaaaa tgaagaagat
    19261 aaaattttag ctcaaaattt catcgaagaa cagcaaaaaa tatttagcaa aaaaatagtt
    19321 actaaaattt caagattgca aacttattac aaagctgaaa actatcatca acattatttt
    19381 ataaataatc ccaatcaagg atattgtcaa gctataatag ctccaaaact gcaaaaaata
    19441 caatcagact aatttcatct ttttaaggtt aaaaaaaatt tcaactttat tcacagcctt
    19501 ttcacgctgt gattttcttt tcaaagtact taaaaataga actttaagct ttaaaataaa
    19561 gaaaaaatta tttattgttt tttaagtttt tttatgaatt tgtatttaaa tgtgaataat
    19621 tttatcaatt aacataattt cctaagctta gctataaaaa atccatcata gtctaagctt
    19681 ggtaaaatcc gtctgcattt tgaaatttca gcaaattctt cactttgccc tgctttagcc
    19741 tcaacatttt ccaaatcaat atctaaaagc tctaatttaa actcactttt taaagcattc
    19801 tctatcactt cttcattttc ttccttggta aaggtgcaag tactatatac aagctctccg
    19861 cctattttta atgcctttaa agcagaatgt agaagttttt tttgagtttt tgcaatattt
    19921 ttgatttctt tataactttt ttccaaatca aaacctattt tagcaaaagt tgaacaaggt
    19981 gcatcaagta agattttatc aaattttaaa gggcataaat tgcctatatt tttaccatct
    20041 ttcataaaaa ctttagcatt cacgccgtaa tttttaagat ttttttgcaa aataaaaaat
    20101 ctatccctac ttatctcatt acaagctaaa tgacctgtat tttgcataaa atttgcaaga
    20161 ttgatacttt taccacccgg agctgcacac atatcaagaa ccctttgccc tgctttgact
    20221 tctaaattta aagcacacaa ataagaagaa taattttgta tataaaagtg cgcctcatta
    20281 aaagctttca tagaacttaa gatagcctta tctttggcat caaacaaata acaataagca
    20341 ttgatctttt taaattttaa tttttgtttt aaaaattctt tttctaattc ttcaatgcta
    20401 atttttaaag tatttgcaaa tacacaaaca tttttttctt gagtaaaaga agataaaata
    20461 ttttgcattt catctttggt ataaagtttt tctattctag agagcaaaat aatcctttat
    20521 catgataaaa gcggataaag agtctaattt accatctttt ttgcgtgtat tggctacgcc
    20581 gtatcctaaa gcttctttgc ttgttccgct ttcatctaca aagcaaattt ctttatcaaa
    20641 ttcaagcaaa gaaacaaaat gcttaatgcg tcttgtcatt tcttcttcac ttgatccacc
    20701 cttaggaatg cctacaatga gtaaagaaat ttcatgtatt ttaagtaaat ttttgatttc
    20761 attagcggct tgattgcgat tttttcttaa aactgcatct aaaggcaaag cgatcttttt
    20821 atctatgcaa agcgctacac ctatgcgttt taaacctaca tctaaagcca aagctctcat
    20881 gctaaaaccc ttataaaaag cccttctatg gaaatttttc cctcaagttc atattcataa
    20941 actttttgtc cataaatttt taaagcctca tcaacactca cacctttttt acaaaactct
    21001 aaaaattcat cttgattcat atctatactt gcaaattcac ttacaaattc tttaaaatca
    21061 caaattaact ttgctttatt ttcctttaaa agcaaattag ttgctgtgct ttctcctagt
    21121 ctttgcggta aaacatataa aggcttattg agttctaaag caagttttgc actttgcata
    21181 gaaccacttt ttatatctgc ttgtgcaacc acaacagcct tacttaaagc aataaccaaa
    21241 cgatttctta gcaaaaagtc ataatttttt ggcaaataat catcttcgta ttcgcttaaa
    21301 gctaaagcat tttcataaat ttgcttaatg attttttcat tagttcttgg ataaatttga
    21361 tctaaaccat tggcaaaaat acctatagta tttggcatag ccgccatact tgcggtgata
    21421 tccacaccca aagcaccgcc acttaccaca caaagatgag catttttaag catgctcgct
    21481 aaggaaaaaa cacaattttt cgtataaaca ctcatgcgcc ttgaacctat aatagcgatt
    21541 ttatcttgtt ttaataaaga taaatttcct ttatagtgca attttttagg aggctttttt
    21601 aaatctttaa aaagttctaa aaattcatca ggcaaaattt cacttgccat aaatttcact
    21661 caaatacaca agatcaacac cttttaacaa atctttactt tgctctaagg ctttaaaagt
    21721 atttttccta ggatgtccta tggctataac aaaacctttt ttttgtgcga gttttactgc
    21781 gttttcgagt tgttttttaa cataattaac atcatcttca ttatctaaaa acacatctct
    21841 ttgtatataa gggatactaa gttctttagc gattttgttt gccttagaat tgcctatagt
    21901 tttagaatct acaaaaaata tattttgatt ttttaaagcc tcataaagct ttttcatagc
    21961 ttcttcattg cttgtaaata aacttcccgt gtgattattg atatatctta aatccttaaa
    22021 atctttttta atttgcttga tttttttaaa aattctttct ttgctatcat ttggatttaa
    22081 agtatcaagc tcgggtttat tgtaattaat tgctgctaaa ggtaaatgca ccatataaaa
    22141 atcaaatttt aaagcaagtt ttggcgtttc gctatggttt ttatctggcg gaaaaaaaga
    22201 aggatttaac tttaaattta aagcttttaa acctctaacc tgacttgcat ttgccatatc
    22261 atcgataata atggcaagtt ttggtttttt agaaatttta tttaaatgaa tatcttcatt
    22321 aaaagttaaa ttttgatctt gggttaaatt tgtatctttt agaataaaat tttgttctaa
    22381 actctgattt tgctctaaac ttaaattctg ctccacactg cttaaatttt gctcatttaa
    22441 acttgtattt aaatcatcaa tttcttgaat tttttgctct aaaatactta cagatttatt
    22501 attatcaaac tcattctctt gaaaaatacc aatttcataa tgatctttat ttaatgaaat
    22561 taaatcttct tgcttatcaa taaaataatc cggcttaaca gaagaaacat cttgggaatt
    22621 ttgatatttt actaaaattc ccaaagctaa agctatgcaa agtaaaaaaa gtatagctat
    22681 gattaaataa cgctgaattt gaactaattt tttctttgac aatgtttagt tcttatcttt
    22741 atctactaat tttttagcac tgatccaagg catcatagca cgcaaattgc gtcctgtttt
    22801 ttctatcaaa gaatcattca tatttttgcg ttctgcatgc attctagcaa aacctgcacg
    22861 gcgttctaag ataaaatctt ttgcaaaaac accattttgt atatctttta aaacaccttt
    22921 catcgctttt ttagtctctt cagtgataat ctttggccct gtgatgtaat cgccgtattc
    22981 tgcagtattt gaaatagaat aacgcatatc tgcaatacca ccttgataaa tcaaatccac
    23041 aatgagtttc atttcatgca aacactcaaa ataagccatt tcaggttcat aacctgcttc
    23101 aaccaaagtt tcaaaacctg cttgaatcaa agcactaagt ccaccacaaa gcacagcttg
    23161 ctcaccaaaa agatctgttt ctgtttcggc tttaaaggtt gtttctataa tacctgtgcg
    23221 tccacccccg atcgcacttg cataacttaa ggctaaattt ttagcatttt tactttcatc
    23281 ttgatgaata gctatcaagc aaggagttcc accacctaaa gtaaattcat ttcttactgt
    23341 atgtcctggt gctttaggtg ctatcatgat aacatctaca ccttttggaa caacaatttg
    23401 accatagtgg atattaaaac cgtgtgcaaa agctatagcc ttaccttcac ttaaatttgg
    23461 ttttatttcg acattaaaaa tatctgcttg aatttcatca ggagctaaaa tcataatcac
    23521 atccgctatc ttagaagcct cactcacact caccacttca aaaccagcat tttttgcttt
    23581 aacagcactt acactacctt cgcgaagtcc gatagttaca tttacgccat tatcccttaa
    23641 attcatcgca tgagcgtgtc cttgagagcc aaaacctata attgctactt tttttgattt
    23701 gattaaattt aaatcacaat ctttatcata atatactgta atagccatat tcactcctta
    23761 aaaattcaaa aattaaaggt attattatag caattaaagt ataaatttca tatttttttt
    23821 ataaacttta tgtaagaatt ttacaaaaaa tcataaagta ttaaaagtga aagaattttt
    23881 aaacagtctt agttatggca ttagctctca cgaagtaagc aatgaattta aacaaatttt
    23941 aagagagctt ttagccaatc atatcattaa agaacacaaa aacaaatact atcttaacaa
    24001 tggttttgcc tttggggtgc ttgatatttc gagcaaaggt acaggttttt tacaatgctt
    24061 tgatgaaagt tttaaaaaag atcttttgat agaaaacaaa aacctaaaag gtgcaaacta
    24121 taaagatata gttgcagtaa aacttctacc tttaaagaaa aaacgcccca gtgcaaaggt
    24181 gattttggtt ctaaaaagag ccaatgaaac ctctttagtg atcaccaaaa ggtatggcga
    24241 agccgtactt ggaatgaata tcaaaacagg attaagcacc gccttaaaag cttctcaaaa
    24301 atccttaaaa gcactacctt taggaacagt tttaaaaata gaaaatgaaa ataacaatat
    24361 catagaagtt ttagggcata ttgatgatga aagtatagat gaaaaaatct ctttagccct
    24421 tttcaataaa aacaacgaat ttagcgacgc ttgtatcaaa gaagccctag caaacggcga
    24481 tagtgttgat gcgagtatgt atgaaaatcg catggattta agagccttgc ctttttgcac
    24541 tatagatcct atacatgcaa aagattttga tgatgcgatt tattttgaca ctcaaaaacg
    24601 agaaatttat gtagctattg ctgatgttag cgaatatgtt tatgcttata gtgctataga
    24661 taaagaagca agaaatcgtg gattttctat ttattttccg cacattgcta tacctatgtt
    24721 accgcatcct ttaagtgaaa atatctgttc tttaaaacct catttagatc gcttagcgta
    24781 ttgttttaaa atcacactcg atcatgaaaa taaagtcatc aaagaagaac tttttgaagg
    24841 tattatcaac tcaaaacgcc gttttaatta cgatgaagtt gatgaaattt tggtacaaaa
    24901 acctgattta aaagaacttt catggcttta tgagcttttt gaaatcacaa aaaatttacg
    24961 caaaatgcgt cttaaaaatg cctttgaatt tcgcaccgaa gaattaagaa tgaatttaga
    25021 tgaaaattta agtctaaaaa gcacagtttt tgaaaaagac acgccttcgc ataatttgat
    25081 cgaagattgt atgcttttag ccaataaagc cgcagcaaaa ctcatagata taggcgtttt
    25141 tagaaatcac ttaagtgctg atacaagaaa aatcgataag cttttaaatg aattacgcga
    25201 actcggaatc gatgtaaatt ttaaacccaa tcttcctgag ctcatacgcg acatacaagc
    25261 tttagctgat gaattaaatt taagagcaga agtagataaa ctcatcatca aagcacaaaa
    25321 aaaagcggaa tactctagcg taaatgcggg gcattttggc ttaggttttg ataaatactc
    25381 acattttaca agccctataa gaaggtattc tgatcttatt ttacacagac ttttaaaagc
    25441 caaacaaaaa aacgatgaaa aactttttaa ttatctactt ttaaacatag aaagcacttg
    25501 cgagaatctt agcacacttg aaagagaggc ggataaggtt gcttttgatt ttatggatag
    25561 aaaatttgct agatgggcag ctaaaaatat aggcaaaaaa tttaaagctt tagttgtcca
    25621 aaatgatgga gtttgcatag ccaaactaga tgatgaaatc aaaggagcgg atataatcct
    25681 ttatgatacg cgtgtaaatt tgctagaaaa tgttgaagta caaatcatgg aagcggatat
    25741 agttatggca aaaatttatg ctaaaatcac ccaaagactt ataaaggaag aaaatgtata
    25801 gaaaagagct ccaaaccctg ctttctaaag attcaatacc taattttttc tttctttatg
    25861 gagcagataa ttttcaaagc gaactttatg ctgaatttat aaaagaaaaa tataagcccg
    25921 atgaaacttt gaaacttttt tttgaagaat acaacttcac tcgtgcgagt gattttttaa
    25981 gcgcaggatc gctttttagt gaaaaaaaat tactcgaaat taaaacttct aaaaaaattc
    26041 caacaaaaga tcttaaagtt ttagtcgaac tttgtaaaaa caatacggac aatttctttc
    26101 ttttagagct ttatgatgaa agttctaaac aaagcgatat agaaaaaatt ttctctcctc
    26161 attttgtaag attttttaaa gctaacggag ctaaagaagg cgtggagctt ttaagcataa
    26221 aagcaaaaca actaggggtt gaaatcactc aaaatgcttt atttactctt tttacaagtt
    26281 ttgatgaaaa cttatatctt gctgcgagtg agcttaataa atttagtggt ttaagagtag
    26341 atgaaaaaac catagaacaa tactgctata gtttgaatac aggaagtttt gaaagctttt
    26401 ttgataaaat tttaaagaaa caagacttta aaagcgaact tgaaaaaatt ttagataatt
    26461 ttaatgaaat tgctttaatc aactctttgt ataattcttt ttatcgtttg tttaaaatcg
    26521 cactttatgc taaagtcaat ggtaaaattg attttaaaga tcttttaggc tatactccac
    26581 ctcctcaagt gggacaaaat ttaagctctc aagcctttag tttaaaaatc gaacaatata
    26641 aagaaatttt cactcttttg cttaaaagcg aatacgaact taaaaccaat cctaaactcg
    26701 taaaaaaaga atttttgatt tcaaatttac ttaaacttgc aaggatttta aaaaattaat
    26761 ttttactctt caatcctctt cacttctttt taatcgtatt aaaataattt aaaatgattg
    26821 tattgttata atctttgttg agtttttaaa atactttaaa agaatgattg caatctaaaa
    26881 agagtttaat aaccttaaaa acatccatcc taataatttt aaaattatca ggatgaaatt
    26941 tttaacaagt aggagagtaa actaattaaa ctaagtatta tcttttataa gattaccaaa
    27001 gataattaaa ctgagcaaat cctgtatggg tattgccatc tttatcaaac attccattat
    27061 agtttaaact aaaatagaaa gcttcattaa caggaacgat aaaagaagtg cttacaaatt
    27121 tttgtactct tggtaaatca aactcatcac ttacttttat attaccaaat ctagcctcag
    27181 cttctacttt aggattgata ttaaacttag ctccaagttc tactgaagtt tttaaattag
    27241 gcaaccaatc tctaaaccaa gtaagacttg ttttagtaga gaaaagattt aaatagtttg
    27301 cataggttct ttctccacct ttaactgttg cttgtcctat ggtgtctttc atagaaaaag
    27361 cttcagtata acctccttca taagcaagac ctatttcagg agagaatata tctttattag
    27421 aaataaaatt catacctaag gctgtattga ctccataagc ataagaatta ggttcagctt
    27481 tagcttcatt atttcctatt tttttagtta aatcattttt aatcaaagca gctttacctt
    27541 gagctttgat ataaacttct tgaccttttt ctgtagtaaa taaggtatta aagtatttta
    27601 aacctgcata ataggttcta ttattaatat caaaataagt tgaacccatt tttctatctt
    27661 cataacctgc atacacacca tatattccac tgtcttttaa agtagaataa cctataatgg
    27721 ttcctttagc gtgtccttta ctttcttcat ttaaagaaag ttcaacattc tgtgaagaag
    27781 tataaggaag gatgaataaa gaatgttctt tattagaacc atagcttcca ttatttaaat
    27841 cactctttat ataatcactt gcatctgcat ataaattacc cttttcagac atagcaatgc
    27901 tttgagattt acttgaagaa gctaaagcaa agctttgcat agaattaccc ataacattat
    27961 ctataaaggt tgatcttctt gaagtagtag agattaaaga tctaaaggtt gcacctgata
    28021 tggaagcatt aagattaaaa tctgtagtaa gctttcctgt tattggatca aagcttaaag
    28081 atatttctcc acctccattg gttcctatat tgccaatatt gccttgatta acacctgaga
    28141 tgatatgatt gatattgtct aattcatcaa gatcaacatt gctttgatct acggtgatgt
    28201 tttctacttt tacattatct ttaccacttc cacctataac cacagtgttt aatttacctg
    28261 tgtttttatc tgtagaaaca agccaatctt tgattccaac actaccacta ccattgttag
    28321 ttactgtatt accattttta tctttaccta ttgagccttg attggagatt tcaacttgtg
    28381 ctgatcctga aacagtgatg ccgttattta tggttgagcc ttgtgaattg gaaatactag
    28441 tgcttccact tcctgaagaa ctaataccgc cactaatagt tccaccatta ctattgctaa
    28501 tcaccatatc agcactacct gtactttcaa tcttaccacc gatattacct gaattagaaa
    28561 tttcaagctt attatcacta ttgttagtaa tagaaccact tatacctgta gatgatgtag
    28621 aagtgttagt gatagaatca agtttactat ttttatctac agtaattgaa ccagaaatag
    28681 ctccattacc ctcattggta atggaatcaa tactactacc accacttact tgaacacttc
    28741 ctgagatact tcctttacct tgattaacaa gaccaccttc taccttagct ccatcttcta
    28801 tcttgatatc actacctata gaagcattac ccatattgat tatatttcct tgaagtttag
    28861 tgtttttccc actaacagta ataccacctg ttatacttcc tgagcgagag ttagctatgg
    28921 ctcgattcga agtagccgta acagttgctc catcttttat gattatagag ccttctattt
    28981 ttccacttcg attcaatata ccagcacctc ttccaccttc taccctagaa ccttcgccag
    29041 ataaaatcat ttctccactt aaagaggccg agtttatcaa tcttatacca tcgatattac
    29101 cttttataat gccgccattt ttaagttcta ttttttgagt ttgtgagtta ttctctaata
    29161 aaattccatg ttcttcacta taaattccac ttactctgcc attacttgaa cttccatcta
    29221 tatataaatc tcctagagtt tgcgattgac ccactcctat tgccgcgtat tttccataaa
    29281 cttgacctcc atcttttatg gtaagtgttc caaatttacc accagttaca gatattccaa
    29341 aagcattaga atggatagat cctgtgttga tgatattttc tatggtactg ttattttgga
    29401 gttttatacc agcagcccaa gtttccgaat tgttttgatt aatggtacct tgatttataa
    29461 gagttttaac aagacctcct ctcatgtaaa taccaatact ttcacccttc atagtgcctt
    29521 cattgatcaa tgattctata gttccacctg atgatcttat aggtgcacta aatccttgta
    29581 tggttcccgt attttttaat gttcctacat tagcatttat ctgtattcca tcgctccaat
    29641 tgccctttac agttgtagta attaaaccgc tattgacgaa ggtatctatt gttgaacgaa
    29701 catttacacc catgctcttg ccttcaatag ttccgctatt gttaaaattc cctatacttg
    29761 ttccttgaga tatatttact cctgtgcctt gtttactctt aatagtccca ctattaacaa
    29821 aacttgatat attggcgtta ccaaaataaa tactttcacc agtatttgaa taaatagttc
    29881 cactattact aaaattattg atagtagatt tagagttatt tgtaccccaa actgttactc
    29941 caaattgaga aaaaccattg cctatgatac ctttattatt aaaggtttct atgctaacac
    30001 cgttatttgt atttgctcct agttgaacac tagcagcatt gtttccacct ataagagttc
    30061 cttgatttaa aaaggtagaa gttgaagaac cttgagtgaa attgaccgct tgttggctac
    30121 cattagaaat agtaatagtt ccaccacttt ctataactag agtattgccg gtgccactta
    30181 cagtttgagt tgaattttgt aaactactta tagtcttatt attattattc gaacttttag
    30241 aacgagaacc tgacctagct ttagcatgtc tatttgcctc ttcgtaagtt tctatttcag
    30301 gagtaagtgt agcatgagta caacttgccg aaaaagaaat agcagctaaa gataaaacta
    30361 tctttttaga atttaaacag aaattttgta tatcttttgt gtatgtttta gttaatgcag
    30421 ttttattcat aaatattc
//
LOCUS       DBBXPZ010000011        30274 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.011, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000011 DBBXPZ010000000
VERSION     DBBXPZ010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 30274)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30274)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30274
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.011"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..146)
                     /locus_tag="ACJFD7_000368"
     CDS             complement(<1..146)
                     /locus_tag="ACJFD7_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859216.1"
                     /translation="MLSLYASDTKDNKKTIQMLEQSPYKEDANLKNYNNTLKVKNGVI
                     IIDHS"
     gene            complement(154..294)
                     /locus_tag="ACJFD7_000369"
     CDS             complement(154..294)
                     /locus_tag="ACJFD7_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859217.1"
                     /translation="MLKMIKIQKVKSLLDLVKKLKNKQSLKIKNQTNTKENLNKTHYL
                     TI"
     gene            complement(557..880)
                     /locus_tag="ACJFD7_000370"
     CDS             complement(557..880)
                     /locus_tag="ACJFD7_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859218.1"
                     /translation="MTEGQENAQKTYDTAANAYNEAVKTYNTALSGITGNNGDKVIAG
                     LKQAVDKVSSDLQQATIALQIATANTNSSLENSNKTLASASINGTSHLTVNENIVQTI
                     SQYPL"
     gene            complement(882..1274)
                     /locus_tag="ACJFD7_000371"
     CDS             complement(882..1274)
                     /locus_tag="ACJFD7_000371"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin"
                     /protein_id="HGG0859219.1"
                     /translation="MSIRSNKGLTGPGGDPTDTIGYKETSDLIAKDNISNEVLNSIFN
                     DLKFNSSVDISDLSKFYKDGKILTADELTSINQSMDFITALYGQTQDSNNATFANALK
                     EVLGNSYGDLGKANQAIIKTKEILSQNS"
     gene            complement(1277..1579)
                     /locus_tag="ACJFD7_000372"
     CDS             complement(1277..1579)
                     /locus_tag="ACJFD7_000372"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859220.1"
                     /translation="MKEFAKDGKLSAFKGNPKTISPVIKSNAGNVINLETITVGERVA
                     MAGNQVSNMKYGGTDYGKFIFTNKKEQSNTVYLNVYSNDTFVIRGPASNTIKKKTL"
     gene            complement(1679..1921)
                     /locus_tag="ACJFD7_000373"
     CDS             complement(1679..1921)
                     /locus_tag="ACJFD7_000373"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859221.1"
                     /translation="MKKLNKLSLSLVVGSLLFTQSYALPSGGKFTHGTSGSISVSGGF
                     NIASDETVNFGQGKTNQNYLNIVYGSKSSHYRWNTQ"
     gene            complement(2278..4539)
                     /locus_tag="ACJFD7_000374"
                     /pseudo
     CDS             complement(2278..4539)
                     /locus_tag="ACJFD7_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344364.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            4682..5056
                     /locus_tag="ACJFD7_000375"
     CDS             4682..5056
                     /locus_tag="ACJFD7_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HGG0859222.1"
                     /translation="MKMRVYYEDTDAGGVVYHSNYLKFCERVRSEIFFNKKVDIFDAS
                     KGHFLLTKANCNFLKPAKLGDMIEIKTKILEVKNASVEILQEIYKDEILFFKMELTLA
                     FIKNEKPARMDMQLKKLFEELF"
     gene            complement(5048..6238)
                     /locus_tag="ACJFD7_000376"
     CDS             complement(5048..6238)
                     /locus_tag="ACJFD7_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859223.1"
                     /translation="MKKIFLIFFLSCFLLNAKEQKLVDVKPVENFYPKLSVQECNTNC
                     LFDLLESRLYLSFLSEFADQNDQFLSNVYAKLLNSITDFEKNVQKITSVKLAIIIPEK
                     TIKSYSNTIINSSIAYLLRQRAEIKVKVFLTGTEDSDKIRAALDAAQAQGYQYAIAGF
                     TLKGANELKNYSGNMKIFIPTIHKNNIQISNQNIIFGSIDYDAQIATLLSKSNANIAI
                     FSDGSALSSNLNSRILAQNNNARIYTIEGEKLDFSRLLRSQGGVNNASIFFNTPLIKT
                     ALASSQLRIYNIHPYVLLSTQINYNPTFLSLTQQGDRENFIIANSINNHDDNLVYLNE
                     IFNQSIDYNWIAYATSIGVDYFYTEFLNKKSESLFDEKIKNSQVDYKVRLMQGKQASF
                     EELK"
     gene            complement(6235..6843)
                     /locus_tag="ACJFD7_000377"
     CDS             complement(6235..6843)
                     /locus_tag="ACJFD7_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HGG0859224.1"
                     /translation="MIRSLYYLKAMGFNFVDTHTNHFEQVQNFQELKQLVSSCTLCQF
                     SKTRKFSLMESKIKNVKLLILDVFGQKSENESGILLNSKKGEKLKHYIYQILGLCDED
                     FYFSYLFKCFCNGKFDDFSLQSCLPFFWNELKLIQPAFLLCLGEYTFKNLGFKDYHIL
                     KGEVFAYKNFFIMPSYDLDFIEKNPSYEKNFIQDLKKIKGFL"
     gene            complement(6840..7319)
                     /locus_tag="ACJFD7_000378"
     CDS             complement(6840..7319)
                     /locus_tag="ACJFD7_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase family protein"
                     /protein_id="HGG0859225.1"
                     /translation="MSEFKIIDLRQEDLDILQEMIIEFAKYEDMLDFLQCTKEKLEHS
                     LLKNKFARAFLLKENEKTIGYMIYFYTFSSFWGSGGIYLEDIYIRENFRKKGYGKAVF
                     KFLGEICKKENLKRLDWVCLNDNILGINFYESLNAKHLKQWRNYRLSGENLEKLCDL"
     gene            7450..7584
                     /gene="rpmH"
                     /locus_tag="ACJFD7_000379"
     CDS             7450..7584
                     /gene="rpmH"
                     /locus_tag="ACJFD7_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HGG0859226.1"
                     /translation="MKRTYQPHGTPRKRTHGFRVRMKTKNGRKVINARRAKGRKRLAV
                     "
     gene            7581..7907
                     /gene="rnpA"
                     /locus_tag="ACJFD7_000380"
     CDS             7581..7907
                     /gene="rnpA"
                     /locus_tag="ACJFD7_000380"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004526 - ribonuclease P activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HGG0859227.1"
                     /translation="MKNFDKFSTNEEFSSVYKIGKKWHCEGVIIFYLNSYEKKIAVVA
                     SKKVGKAVVRNRSKRILRALFAKFERYLRDGKYIFVAKNEITELSFSRLEKNLKWGLK
                     KLECFK"
     gene            7904..8245
                     /gene="yidD"
                     /locus_tag="ACJFD7_000381"
     CDS             7904..8245
                     /gene="yidD"
                     /locus_tag="ACJFD7_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HGG0859228.1"
                     /translation="MICLKILRFYQKFLSPLKPAACRYYPSCSEYALWQFQKKNFFLA
                     FFSTFFRVLRCNPFFKGGFDYPRVSKNFYPINLCFKPIFLAKKQLCFLYIPYKNKSFY
                     LIKIIFKRTNQ"
     gene            8242..9834
                     /gene="yidC"
                     /locus_tag="ACJFD7_000382"
     CDS             8242..9834
                     /gene="yidC"
                     /locus_tag="ACJFD7_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HGG0859229.1"
                     /translation="MNNSNNIFQQKRILLAVVISFLFFVVYDYFFIPKQPLKIEQNIT
                     QQNQQNTSINNTPNIQNTTTNTPSAALVSQDSVISKVQSKHFEAQIDSFGRISAFYLK
                     DKKYQNEKGEFINLVSKENSPYPLEMRFSDPSINSEAFKIPYVANASNLFVDENGSQV
                     LKLTQNLSGLKIEKDITFYPKGNYEIEVKLSKNANYFISPGYRPNIAVDSYTVHGALV
                     MDNKETIETYKDGDVEKDESANNVVMTSAFDRYYATFFYNFDKPLNVAISKDANQNPI
                     VFAYSDNEFKAGGYIGSKEHVILRSIDPRLEAVVEYGWFTFIAKPMFEFLNFLHQYIG
                     NWGWAIVVMTLIVRIILFPLTYKSMISMNKLKDLAPKMKDIRERYKGDPQKMNMHMME
                     LYKKHGANPMNGCLPILLQIPIFFAIYRVLLNAIELKAAPWAFWIHDLSVMDPYFILP
                     ILMGATMFLQQLITPMTIQDPMQAKIMKFLPVIFTFFFITFPAGLTLYWFVNNLCSLV
                     QQWVINKIFAKEHHKKQAEHEK"
     gene            9831..10649
                     /locus_tag="ACJFD7_000383"
     CDS             9831..10649
                     /locus_tag="ACJFD7_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Jag N-terminal domain-containing protein"
                     /protein_id="HGG0859230.1"
                     /translation="MKIEAIDLQSALTEASRSLECSVMDLEYEIIQHPRKGFFGFGRK
                     KAIIEAKAKKRILKKNPKKEFTSSKNHKPETHEPKQENKIETKNEKNKSQKEKYTVKS
                     DEIFDSFHRESKGVRNTQDILDEIRIQLVKLLESSQFKIELSELRMYDEDCVLIRLDG
                     EDAALMIGKEAHRYKAISYLLHNWINLKYNLLVRLEIAQFLENQIQGMQLYLQNVIEK
                     IKIHGRGQTKPLDGVLIKIALEQLRAEFPDKYVGIKQNNDQRFVVINDFFKKDE"
     gene            10642..11970
                     /gene="mnmE"
                     /locus_tag="ACJFD7_000384"
     CDS             10642..11970
                     /gene="mnmE"
                     /locus_tag="ACJFD7_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HGG0859231.1"
                     /translation="MSDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRH
                     ATFTKLFNQNNEIIDEAIMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSLGAR
                     LALAGEFSKRACLNGKMTPLKALNIQDLILSKSALAAKIIARNMQGNLGKLLEKIRID
                     LVKTLAFVETSIDYADDDLPFDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIA
                     IVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK
                     DVIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDL
                     ENVFKNTQNKNFIKLSAQKDITLLKEELQNYFNSFDSEGIMVSSLDLINACKISSEAI
                     FRAKGLLEESSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK"
     gene            11981..14167
                     /gene="purL"
                     /locus_tag="ACJFD7_000385"
     CDS             11981..14167
                     /gene="purL"
                     /locus_tag="ACJFD7_000385"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HGG0859232.1"
                     /translation="MDKETIKAHKISDEEYAQILEILGREPNLLELGVISAMWSEHCS
                     YKSSKKYLNGFPTKAPWVIQGPGENAGVIDIGQGMAAVFKVESHNHPSFIEPFAGAAT
                     GVGGILRDVFTMGARVVAGLNSLKFGNIHDEKCGKHQKYLVKGVVNGISHYGNCMGVP
                     TIGGECAFDECFNGNILVNAFALGVCKSEDIFYAKAEGVGNPVIYVGSKTGRDGLGGA
                     VMASDSFNEESKSLRPTVQIGDPFSEKLLMEACLELFKTDYIVGIQDMGAAGLTSSSF
                     EMTGRSGSGMKLYLDKTPIRESGMTPYELMLSESQERMLICAKKGYEDKVIEIFKKWD
                     LDAVVIGEVTNTGKMELFWHDELVGLIPIEPLSEKAPILSRPISEPKYLSEIKDYKFE
                     LKLSIQELFIQMLQNENINNKAFIYDQFDSSVQTNTIKADGRLGASAIRIKENGASVA
                     MAIECNSRLNYVNPKIGAALAVASAGRKVACTGAKPLAISDCLNYGNPQNPEVMWQFA
                     QGCEGIKEACKELNTPVVSGNVSLYNETEGVSIYPSPTIVSVGVLEDANKTLKASFEK
                     ENLSVYLLGESLGEFGGSMVMKIQDKKVSGSLKELDYKAEIALWDLLYKANQNSLLEC
                     ANSVGIGGIAMTLAKMFAISSVGVNLTSGFDDEKMIFDESASRAIVGLSKENEEAFLN
                     LAKEFGVKAYKLGVSTSQKHFKLDNIELSKAELDKLYFESFKEQIQ"
     gene            14164..14934
                     /locus_tag="ACJFD7_000386"
     CDS             14164..14934
                     /locus_tag="ACJFD7_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HGG0859233.1"
                     /translation="MTLVLIILVILVFYWYYKTWGKQDFLNSAARGAKGFAKGFVRGV
                     MEERMDEFKRRMNYYVIVLLAKIAKSDGRVSENEAEMIKDLLDANAKDEKERAFLKAS
                     FNEHKENLSDAFYVAKDFLKEVPLPKNERFNVLRVLVFMALIDADFNAKKREILEQIA
                     KAFDIAKSELDAFIASLSNLKSTKKELSLDEAFAILELSNNADLNAVKKQYRNLAKKY
                     HPDILNANNVSEEELKIGVEKFQKINEAYEKVKKYLER"
     gene            14937..16469
                     /gene="purH"
                     /locus_tag="ACJFD7_000387"
     CDS             14937..16469
                     /gene="purH"
                     /locus_tag="ACJFD7_000387"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HGG0859234.1"
                     /translation="MRALLSVSDKEGIVEFGKELENLDFEILSTGGTFKLLKENGIKV
                     IEVSDFTKSPELFEGRVKTLHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYP
                     FKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKKGQND
                     ENFRLNLMIKAYEHTANYDAYIANYMNERFNGGFGASKFIVGQKVFDTKYGENPHQKG
                     ALYEFDAFFSANFKALKGEASFNNLTDINAALNLASSFDKAPAIAIVKHGNPCGFAIK
                     ENLVQSYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVVIAANVDEKALAVF
                     EGKKRIKIFTQESPFLIRSFDKYDFKHIDGGFVYQNSDEVGEDEFKNAKLMSQREASK
                     EELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKAAIAKAKEMGLDLQ
                     SCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKVADEYGMALYFTGVRHF
                     LH"
     gene            16568..17030
                     /locus_tag="ACJFD7_000388"
                     /pseudo
     CDS             16568..17030
                     /locus_tag="ACJFD7_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873184.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            17487..18020
                     /locus_tag="ACJFD7_000389"
     CDS             17487..18020
                     /locus_tag="ACJFD7_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HGG0859235.1"
                     /translation="MSNKANSANEKSFLLLEQMLKSLFNVANKVSIVSQNENELAKKV
                     ENMVNQAGNIQKATQMMDKIADKTKLPSLNADIEVARAGAFGLGFSVIAEDDRQLAQN
                     SEEFLGNVAQITKELLQSINEVNAELKKNTQSIQALNDDTALLVDDANEVKLCNEDAR
                     ALVTQCTEKIKISQENI"
     gene            18036..18155
                     /locus_tag="ACJFD7_000390"
     CDS             18036..18155
                     /locus_tag="ACJFD7_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002908971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCP-domain signal transduction protein"
                     /protein_id="HGG0859236.1"
                     /translation="MQENVEVSEKNEEISKILLQVVDELKIVCHNLESELNQF"
     gene            18171..18605
                     /locus_tag="ACJFD7_000391"
     CDS             18171..18605
                     /locus_tag="ACJFD7_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HGG0859237.1"
                     /translation="MKKTLQIALAATFFAGCASTSVTSSTSKGNNELVQNQLFKIEKI
                     IVNGKTFDPKNAEESPNISFENNKFYGYSGCNRFFGSYQTKADALQIEGDRVASTQML
                     CHPMDVMDFENSFLSNFKGIFKISNENGKLVLSNDEMKIFFK"
     gene            18704..19681
                     /locus_tag="ACJFD7_000392"
     CDS             18704..19681
                     /locus_tag="ACJFD7_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HGG0859238.1"
                     /translation="MIKSIPEWSEQEYLMLSLPHEKSDWNPYLEEILQSYKEFVKAVS
                     EFQKVLLMAPKQSDFENFKDIKNVEYFKCDTNDTWIRDFGAIDIIENGRLKALDFTFN
                     AWGNKFQSELDNAVNSKLFKEKFKEELKKVDFILEGGSIDFNGEGVMLTSSHCLLNEN
                     RNSHLNKTQIDIKLKEIFGLKQIIWLENGFIKGDDTDHHIDTLARFIDKNTIAHCICE
                     DEEDEHYLPLQKMKEELKKTGFDLVELPIPKPLYYEGRRLGATYANFVFINNALIVPF
                     YKDKNDEIIAKRLSKALPSHKIIGVDARVFLRQNGSLHCSCQNRFKGLR"
     gene            19678..20565
                     /locus_tag="ACJFD7_000393"
     CDS             19678..20565
                     /locus_tag="ACJFD7_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HGG0859239.1"
                     /translation="MSLQKKATLVASLCAIVLALVKFIVGLTSGSVAVLSSAIDSLMD
                     FAISAFNFLALKKSSQKANENYNFGFSKIEALMGLLEGVFIVGVGIFIFYESILKIYY
                     KEEIKDLNSSIYVMIFALIMTFFLVLFLNYVAKKTKSLIIESDALHYKTDCLTNACTL
                     GALVLIYFTNLHIIDAIFGIVISLYTVFSAFKIIKKALAFLMDEALPKEQVDKICTLI
                     SNNPEIISYHELKTRKTPSCNYLSVHLVFCPIISLLNAHKISDEIEEGVRKMFENEKW
                     DIQIHLDPYDDAEQERQRQ"
     gene            20562..21434
                     /locus_tag="ACJFD7_000394"
     CDS             20562..21434
                     /locus_tag="ACJFD7_000394"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidohydrolase"
                     /protein_id="HGG0859240.1"
                     /translation="MKIALIQQKFHLNKEQTIKKTCEFIEEASKQGAELVCLGELHQS
                     EYFCQSENVDFFDYANDYEKDVKFWANIARKNQIVLIASLFEKRSAGLYHNTAVVFEK
                     DGSISGKYRKMHIPDDPCFYEKFYFTPGDLGFEPINTSLGKLGVLICWDQWYPEAARI
                     MALKGAEILIYPTAIGWLDKDEDEEKQRQLNAWLGVQKGHAIANGLYVVAINRVGFEK
                     DVSGVEEGIRFWGNSFVFGPQGEELCLLDSQNECVKIIEIDKKRSENVRRWWPFLRDR
                     RIEYFADLTKRFID"
     gene            complement(21446..22792)
                     /locus_tag="ACJFD7_000395"
     CDS             complement(21446..22792)
                     /locus_tag="ACJFD7_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HGG0859241.1"
                     /translation="MKSCLYFTFIVLFLTACSTKNLTSLHRENLEQKNENQHYVKLEY
                     EQNVNILPQFAYDINFDAKRYKKYFFNPWHDSFKNYKGQNIFWSFPLYLNSKNTYYFF
                     NKQIIPLSWFKNAINNANIQEFGKLNQKALIIQNTIIKNLPTQRAILKNPFFENEGIP
                     FDYASDGILNTGAPVLISHFSKDKRYAFVLGEAGFGFVESKNLEFFSNDRAKIYENLN
                     FITPLKEKFAIYSEDGKFLFESRIGAIYPYYKEDKNYFYGKIGSKKYKISKKDVSKFP
                     LQFNDKNLKNQLSQVLNLPYGWGGYNFERDCSLLTRDIFSAFGLYLPRNSAAQKNSFN
                     HFDISTLSNSQKKDFLNRFGKAYLSLLYLPGHIMLYAGQITDNNIAIHNIWGLRKDAT
                     QRLLISSSVITSLEIGKNEILEDNLLLSRLKEISFINLNEQEKEQIKSYLENIQNK"
     gene            22841..24184
                     /gene="pif1"
                     /locus_tag="ACJFD7_000396"
     CDS             22841..24184
                     /gene="pif1"
                     /locus_tag="ACJFD7_000396"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HGG0859242.1"
                     /translation="MFDKLEKILAYDNVFLSGGAGVGKSFLTNELIKSYRKQKKLAIA
                     LGSSALSAFNIGGVTLHSFFCLGYCDDMMKLSALDRNQKQKEKLTKLKELLKTIELII
                     IDEISMVSANVFEMIGFRLKNSQFNGKILVVGDFFQLPPVIKEKKETLFNHSYYAFSS
                     FFWQDLNFKNIKLSQPKRTQNMEFYNHLSLIRQGFLDEKILSFFESLRIDYKELENLE
                     DDYTLLCGINKKVNNINQEKLSKLETPLVCFKAQVKKEDKRIKDEELDSWIRSLNILE
                     ELNIKIGARIIFCVNNWDKNYYNGEQGIIEDILYEEEKIYISIIKNNGMKILLEPYTF
                     FMEELEQSGKDFVVNILASVTQFPIKLAYAITIHKSQGMSIEKLVCDIDHIFENGQLY
                     VALSRATNPNTLKIYSTKKINFGFYFANILKIDSNVIEFYKKHNFLDLEIQEQII"
     gene            24194..24928
                     /locus_tag="ACJFD7_000397"
     CDS             24194..24928
                     /locus_tag="ACJFD7_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859243.1"
                     /translation="MKKIFLSVFLVLSLNAQNLEIDKIRTDLYSKSGANVLKKVEISL
                     EFDGNNLKENENKLIDAVNTVISGFFYEDIFTEIGKNNFKKTLEKFLDKKYKIKLDDI
                     YIISLSGVEKFDLEEFKRFLESTEAKEKGMGSEVKKALENLEVPKTQVPSVEKIPTPS
                     VPNLEVKQVEQLFKDPDEENKNDNGEINIDNLNTPKITPDIEEKIKRDLIANPPQIFK
                     ENNASKPYHLPQTGYDIKLDENSTQN"
     gene            complement(24925..25434)
                     /gene="lolA"
                     /locus_tag="ACJFD7_000398"
     CDS             complement(24925..25434)
                     /gene="lolA"
                     /locus_tag="ACJFD7_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LolA-like outer membrane lipoprotein chaperone"
                     /protein_id="HGG0859244.1"
                     /translation="MKKTFLIFFIFIGQLFALDLNFNTFSSNFTQIVKSKNSTLSYSG
                     HFILSKDQAYWSYDTPSKKEIYINKNQVTIVEHDLEQVIFSHLDNIPNLNEIFKKASL
                     IDKDKLAAKYDNINYTIKLNQEQIQSISYKDEFENDVIINLNNQIKNPKINSDIFKAK
                     IPQNYDIVR"
     gene            25534..28122
                     /gene="secA"
                     /locus_tag="ACJFD7_000399"
     CDS             25534..28122
                     /gene="secA"
                     /locus_tag="ACJFD7_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0017038 - protein import [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HGG0859245.1"
                     /translation="MFLNTLKAVFGTKNDREIKKYFKRVAQINALEGNYQNLSDDELK
                     AEFAKFKEQILSGEKNENDVLNDVFAIVRETGKRTLNMRHFDVQLIGGMVLHDGKIAE
                     MKTGEGKTLVATLPVVLNAMSGKGVHVVTVNDYLAKRDAEQMSAIYNFLGFSVGVVLS
                     SQNSDIEHKQAYDCDITYGTNNEFGFDYLRDNMKFSKAEKVQREHNFVIVDEVDSILI
                     DEARTPLIISGPTNRTLDGYIKANEVAKQMQKGEAVLPPAKPEGDFVVDEKNRNILIT
                     EAGIAKAEKLFGVENLYSLDNAILAHQLDQALKAHNLFEKDVHYVLRNNEVIIVDEFT
                     GRLSEGRRFSEGLHQALEAKENVKIQEESQTLADITFQNYFRMYNKLAGMTGTAQTEA
                     TEFSQIYSLDVISIPTNIPIKRQDKDDLIYKTQNEKFKAVIEEIKKANAKGQPVLVGT
                     ASIERSEVFHNMLVKEKIPHHVLNAKNHEQEALIIQDAGKKGAVTIATNMAGRGVDIK
                     IDDEIRALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGISRFYLSLEDNLLRIFGGD
                     RIKSIMDRLGIEEGESIESRIVTRAVENAQKKVESLHFESRKHLLEYDDVANEQRKTI
                     YRYRNELLDENYDIRAKISQNIAEYSANVMNDYMLDESGSNVNFENLKAKILYECSTQ
                     ISEKDFENLSVIEMQDKLSQILENSYNEKMLRLEIKELRNIERILYLQVLDNAWREHL
                     YQMDILKTGIGLRGYNQKDPLVEYKKESYNLFLELVNRIKFDSIKLLFSVQFNQEEAQ
                     NLENKANEENEKLLQSSVEMGASEDNLGEAEFKKVPRNAPCPCGSGKKFKECHGKSGP
                     KQGILA"
     gene            28119..29324
                     /locus_tag="ACJFD7_000400"
     CDS             28119..29324
                     /locus_tag="ACJFD7_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0859246.1"
                     /translation="MNKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVA
                     MAIMNGFDKEFEKRFFVMNYPITILPKFYAPVNDEFIDELRKTFPNLLFSPYLSTQVV
                     VKGDNRFEGGVLFGVNFNDEKKINEVVAKALKDENLSGFDILVGSALTDEFGLHKNDK
                     LSLIFSNLNPSGFSLVPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGIPKNPN
                     YDGIHVYSDNAFKDVEKIKSYLKDDYAVVGWWEQNKNFFSALELEKRALFIVLMLIIL
                     VASLNIVSSLLMIVMNRRSEIALLLALGASKNEVKKSFFALGMLIGGGGMIVGVVLAF
                     FALWLLGNFDIVTLPVDVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQI
                     NILDTLRNE"
     gene            29347..30132
                     /gene="glnP"
                     /locus_tag="ACJFD7_000401"
     CDS             29347..30132
                     /gene="glnP"
                     /locus_tag="ACJFD7_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HGG0859247.1"
                     /translation="MSLFTQKNKNFKPLKPLSKSKIITNLILLILFLILFCYCSFSIS
                     AYHFDFSAIATYKEKFLQGFLNTLIISFFSLLLSIILGGVFCAFSLSSIVFLRFLSTF
                     YIELVRGTPLLVQVLLMYYIIANNLGLDNRYVAGVIILSCFSAAYLAEIFRAGILSIS
                     ISQLESARALGLKEMQVFAYVIFPQALKNILAPLSGQFANLIKDSSLLSVIAVNELTQ
                     SAQEINSYTFATLEAYVILAITYLVLTLPISIFSRYLERKCQK"
     gene            30194..30269
                     /locus_tag="ACJFD7_000402"
     tRNA            30194..30269
                     /locus_tag="ACJFD7_000402"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:30227..30229,aa:Lys,seq:ttt)
BASE COUNT        10632 a         3782 c         5271 g        10589 t
ORIGIN      
        1 gaatgatcta tgataatcac tccatttttt acttttaaag tgttattgta gttttttaag
       61 ttagcatctt ctttataagg agattgttct aacatttgta tggttttttt attatcttta
      121 gtatcactag cataaaggct taagatagct aaactagata gtaagataat gcgttttatt
      181 taaattttcc ttagtgtttg tttgattttt aatctttaaa ctttgtttgt tttttaattt
      241 tttaacaaga tccaaaaggc ttttaacctt ttggatttta atcatcttga gcaaggattt
      301 cctgctttaa aattatccga tactatacaa cattaccact ttcttgagta ctggcttcat
      361 ctatacttgc ttgtttatca tcttcattga tatttggatc ttcatctgta gtttgtataa
      421 aaagctgtag caatgccagg ttcttgttgt cctatggtat catttgggtt attattagaa
      481 ccgttgttgt tgctattgtt aatatcacct gaatcggttc catcgtttcc gttgttggag
      541 ttgttagatc ctaaatttat aatggatact ggcttatagt ttgcactata ttttcattga
      601 ctgtaagatg actagttcca tttatgctcg cacttgctaa agttttatta gaattttcta
      661 aactagaatt agtattcgct gtagcgattt gaagagctat tgtagcttgt tgtaaatcac
      721 tagaaacttt atctacagct tgttttaaac ctgcaataac tttatcgcca ttattacctg
      781 ttataccact tagagctgta ttgtaagttt taactgcttc attataagca tttgcagcag
      841 tatcgtaagt tttttgagcg ttttcttgcc cttcggtcat tttaggaatt ttgagaaaga
      901 atttcctttg ttttaataat ggcttgatta gcttttccta gatcaccata agaatttccc
      961 aatacttcct ttaaagcgtt tgcaaatgtt gcattattgc tatcttgagt ttgtccatat
     1021 aaagcagtaa taaaatccat actttgatta atgcttgtta gttcatcagc tgttaatatt
     1081 tttccatctt tataaaattt acttaagtcg ctaatatcaa cactagaatt aaatttcaag
     1141 tcattaaata tagaatttaa aacttcattt gagatgttat ctttagcaat aagatcgcta
     1201 gtttctttat agcctattgt gtctgttgga tctcctcctg gtccagttaa gcctttatta
     1261 gatcttatac tcaatattac agagtcttct tttttattgt atttgatgca ggaccacgaa
     1321 tgacaaatgt atcattacta tagacattaa gatagacggt attggattgt tcttttttat
     1381 ttgtaaaaat gaatttacca taatcagtgc caccatattt catatttgaa acttgattgc
     1441 ctgccatagc aactctttct cctaccgtta tagtttctaa atttataaca tttcctgcat
     1501 tggatttaat tacaggtgat attgttttag gatttccttt aaatgctgaa agttttccat
     1561 cttttgcaaa ctccttcatc tccttatcac ctattgatga agcagacaga acaatttttt
     1621 tccaccttta cccactacta tgccattagg attgattaaa aagatattat tgcttccgct
     1681 attgagtgtt ccatctataa tgagagcttt tagaaccata gacaatattt aaataatttt
     1741 ggttagtttt tccttgtcca aaatttacag tttcatcact tgctatatta aaaccaccac
     1801 taacacttat acttccactt gttccatgag tgaacttacc cccacttggt aaagcatagc
     1861 tttgtgtaaa aagtaaagaa cctacaacta aagacaaaga aagtttattt aactttttca
     1921 tgacttgctc ctttttgtaa gattaagatt taagaatctt ttgtttatat ttataaaaat
     1981 acaaataaat tattcctatc ttaaagatag gaataattta ttttatcctt gcataaatgc
     2041 ttttgccatc ttgagatatt cttacttcat aagaaagctt ttgtaggttc atattttcta
     2101 atctatctat agaacttagt ttaaaatctt ctttgttttt tgcatttttt caataaagct
     2161 ttgaagttct tcttgattta aagtattaga gttttcatct ataaaacctt gctcactttg
     2221 taagattatt ttaatatagg ggtattactc tttgagggtg taaagagcta atactcctta
     2281 gctagaaata ttaataggag catcgtatga cttcaaaaag gggagttgtg ttgattttat
     2341 tggatacaat aagataataa tgctcaaagt tattaataat tctagcttca actttagtat
     2401 ttaaaatcag tctattgttt ttacttaaac tgatatctga aggagctata gcattagaag
     2461 tactataatt atcttcataa tgcactaagg ctcctgctaa tatatcatga aagtgttttt
     2521 aaatatattt aaattcccgc ttatataagg tattattata agatttagct tcacttaaac
     2581 ctgtaatggc cgaaggagct ataaaaacag aattgttatt tttatactca tcaagattga
     2641 gattgtttat gattaaggta ttatcatggc cattgtttga aagtccagct ataatactta
     2701 aaattccttc tcttttatct gaagctacac caaataaagt atcattgata atgattttat
     2761 tataagcagc ttcattataa gccataatca aataagcatt atcagctgca ttagaagaat
     2821 agttttttat atctatgata ttatgattag ctttatctaa agctcttatg atgattttag
     2881 aacctttatc tgtattactt gcatcagtaa tgctttgaac attgttataa tttatagtat
     2941 tataagaagc ttctttggct tctattaata cagttagatt tctaaaagaa gcaaaatctt
     3001 taatcgatac tttattgtta ttagcactac taggataaaa gtcttgatta ttaagaaggt
     3061 ttttcttagc tgtataaatg tatacaggta aggttgacat agaattatta atataaactt
     3121 tattataatc cgcactgcct tctaagattc tagcagctat aatatttaaa gcatctttat
     3181 agctttgaga aagatcggtt gtggtaagat cgtttttaat gttaatggta ttatgattaa
     3241 ctcctttagt tgcaaagtca ccataaaaag aatgttggtt ataacctaag aagttattag
     3301 cgatttctaa aggatgtttt aattctatgt ttaaggtatt ataatttact tctccattat
     3361 tataagctcc tgcgtagaag ttaaacaaag cttgagcaaa aatgttctca ttgtttttat
     3421 ttttttaggt ttttaatatc ttttaatatt gatagtatta tctaaggctt gtccttgttc
     3481 ggtttttcca cccaaaaaat cagcaaataa aacagaatta taagctaagg gttgtttatc
     3541 atggttcata tacatatcaa gattaaaact atctatgtct aaaaggtttt tactggcttg
     3601 aaagttttta tctgattcgc tatctatata acctgcgcta atatgagcag cagctaaact
     3661 agcataagct ttgcttggat catggataat catattagca tctttgataa agattttatt
     3721 gttttttaca ttaccttgat aagctaaacc acctacaagg tgagtgattc tttcatcaaa
     3781 ggtattatta ccatttttat cttttttagg caaggaagta aaaaactcta cactgctacc
     3841 tgcttttata tttaaactat tatttgtaga atctctataa gtggctatag ctccgattaa
     3901 ataaggagaa ccatttaagg ctaaatcata agtgttctca actcccatac taatatgggc
     3961 atctttttga agtatggttt ggttatagct tgcattacta taatgagtaa aggtagaact
     4021 cattaagaaa ttcatgcgtt gattgctttt ggaattacta gggtttttat atgagtatct
     4081 ttaggtttaa gataaaaaac cgaactaagt tctccttgtt ctaatataag tttgttataa
     4141 cttgcatcag catgatcggt ttttgctgtg attaaaaaag gaagcactct aactgttttt
     4201 tatactacga tcggctgtat taacaccatg ccttgcttta aaagaaagaa cttcatcttc
     4261 tctcatatca ggagtaagta aataatgttt aaaatttaaa tcgtttatat ttgtaatatt
     4321 tagtttatga ttgttaaata ttgttaatat attgtttaga actcttagca taataattta
     4381 taccttggaa ttttttataa gtagaattgg ttttatcata aagttcgtta tcattaaaat
     4441 aatgctttgg aatattgaaa ttttatttgc ttgagtggct gcaaaagcgt tgatgcttaa
     4501 gaaggtaaca atggaaagtt taaaacaaaa tttctctata ccccctccca gtgaagttaa
     4561 aaagctttat taaattaaga ttggacggaa ttttttaata taaactaaaa agcgatatca
     4621 aagaatttcc gttgtataat ctaatgtttt ttaaatgtga aatatttttt aaggtaaagc
     4681 gatgaaaatg cgtgtgtatt atgaagatac tgatgcgggt ggagtggtgt atcatagtaa
     4741 ttatttaaaa ttttgcgaga gagtaagaag tgaaattttt ttcaataaaa aagtagatat
     4801 ttttgatgcg tctaagggac attttttact tacaaaagca aattgcaatt tcttaaaacc
     4861 tgcaaaactt ggagatatga tagagattaa aacaaaaatt ttagaagtca aaaatgcttc
     4921 tgtggaaatt ttacaagaaa tttataaaga tgaaattttg ttttttaaaa tggaattaac
     4981 tttagctttt attaaaaacg aaaaaccagc tagaatggat atgcagttaa aaaagctctt
     5041 tgaagaatta ttttaattct tcaaagcttg cttgcttacc ttgcataaga cgcactttgt
     5101 aatcaacttg agaatttttg attttctcat caaataaact ttcgcttttt ttatttagga
     5161 attcggtata aaagtaatca actcctatgc tagtagcata agcaatccag ttataatcta
     5221 tactttgatt aaaaatttca ttaagataga ctaagttatc atcgtggtta ttgatagaat
     5281 tagcaatgat aaaattttct ctatctcctt gttgtgttaa acttaaaaat gttggattat
     5341 agttgatttg agtggataaa agcacataag gatgaatgtt ataaattctt agttgagaac
     5401 ttgctagagc tgttttgatc aatggagtgt taaaaaatat tgaggcatta ttaactccac
     5461 cttgtgatct taaaagcctg ctgaaatcaa gcttctcgcc ttctatggta tatattctag
     5521 cattattatt ttgagcaaga attcttgaat ttagattgct tgataaggca gagccatcgc
     5581 taaatattgc gatattagca tttgatttgc ttaaaagtgt ggcaatttga gcatcatagt
     5641 caatacttcc aaaaataata ttttgatttg aaatttgtat gttgttttta tggatagtcg
     5701 gtatgaaaat tttcatattt cctgagtaat ttttcaactc attagcacct tttaaggtaa
     5761 atccagctat ggcatactga tatccttgag cttgtgctgc atcaagcgcg gctcgaattt
     5821 tatcactatc ttctgtgccg gttaaaaaaa cttttacttt gatttcagct ctttgtctta
     5881 aaagataggc tatgcttgaa tttattatag tatttgagta gctttttatg gttttttctg
     5941 ggataattat cgcaagttta acagaagtaa ttttttgaac atttttttca aaatcagtaa
     6001 tggaatttaa taattttgca taaacattgg ataaaaattg atcgttttgg tctgcaaatt
     6061 cacttaaaaa actgagatac aatcttgatt ctaaaagatc aaaaagacaa tttgtgttgc
     6121 attcttgaac gcttaattta ggataaaaat tttcaacagg ttttacatcg actaattttt
     6181 gctcttttgc attaagcaaa aagcaagata agaaaaatat taaaaatatt tttttcataa
     6241 aaatccttta atttttttta aatcttgtat gaaatttttt tcataacttg gatttttttc
     6301 tataaaatct aaatcataac ttggcattat gaaaaaattt ttataagcaa aaacttcacc
     6361 ttttaaaatg tgataatctt taaatcccaa gtttttaaat gtgtattctc ctagacaaag
     6421 caaaaaagca ggttgaatca gttttagttc gttccagaaa aatggtaagc aagattgtag
     6481 cgaaaaatca tcaaattttc cattacaaaa acatttaaat aaataagaaa aataaaaatc
     6541 ttcatcgcaa agccctaaaa tttgataaat atagtgtttt aatttttcac ctttttttga
     6601 attaagtaaa attccgcttt cattttcact cttttgccca aaaacatcaa gaattagcaa
     6661 tttgacattt tttatcttag attccataag actaaatttt cttgttttgg aaaattggca
     6721 taaggtgcaa gatgaaacaa gttgttttaa ttcttgaaaa ttttgtactt gttcaaagtg
     6781 gtttgtatgt gtatcaacaa agttaaatcc catagctttt aaataataaa gacttcttat
     6841 cataaatcac acaatttttc taaattttct ccacttagac gataatttct ccattgttta
     6901 agatgtttag cgtttaaact ttcataaaaa ttaataccta aaatattatc atttaagcaa
     6961 acccagtcga gtctttttaa attttctttt ttgcaaattt ctcctaaaaa tttaaacaca
     7021 gcttttccat aacctttttt acgaaaattt tctcgtatat aaatatcttc aagataaatt
     7081 ccaccgctgc cccaaaaaga cgaaaaagta taaaaataaa tcatatagcc tatagttttt
     7141 tcattttctt ttaacaaaaa agcacgagca aatttatttt ttagtaaaga atgttccagt
     7201 ttttctttcg tgcattgaag aaaatctaac atatcttcgt attttgcaaa ttctatgatc
     7261 atttcttgta aaatatctaa atcttcttgt cttaaatcaa taattttaaa ttctgacatt
     7321 tttaaccttt taaaaataat ttcaaaattt atcaaaagaa tttaaaaatt actcttaatc
     7381 aaaagcaatt tataagtaag attaagataa aatacaagtt tattttataa ttttttaagg
     7441 aaaaatcaaa tgaaaagaac ttatcagcca catggcactc caagaaaacg tactcatggt
     7501 tttcgtgttc gtatgaaaac taaaaatggt cgcaaggtga tcaatgcaag acgcgctaaa
     7561 ggtagaaaaa gacttgctgt gtgaaaaatt ttgataaatt tagcacaaac gaggaatttt
     7621 catctgtata caaaataggt aaaaaatggc attgcgaagg tgtgattatt ttttatctga
     7681 atagttatga aaaaaaaata gcagttgttg ctagtaaaaa agttggaaaa gcagtggtta
     7741 gaaatcgttc aaaacgaatt ttaagggctt tgtttgctaa gtttgaaaga tatcttcgag
     7801 atggcaaata tatttttgta gctaaaaatg aaatcactga actttctttt tctaggttag
     7861 aaaaaaatct aaaatgggga ttgaaaaaac tagaatgttt caaatgatat gcctaaaaat
     7921 actccgtttt tatcagaaat tcttaagccc tttaaaaccc gctgcttgta ggtattatcc
     7981 tagttgttct gagtatgcgc tttggcagtt tcaaaaaaag aatttttttc tagctttttt
     8041 ttctactttt tttagagttt taagatgcaa cccttttttt aaagggggtt ttgattatcc
     8101 tagagtttct aaaaattttt atcctataaa tttatgtttt aagcctatat ttttagcaaa
     8161 aaaacaactt tgttttttat atatacctta taaaaataaa agtttttatc ttataaaaat
     8221 catctttaaa aggacaaatc agtgaataat tcaaataata tttttcagca aaagcgtata
     8281 cttttagctg ttgtgatttc ttttttattt tttgttgttt acgattattt tttcattcca
     8341 aaacaacctt taaaaataga acaaaacatt acacaacaaa atcaacaaaa cacaagcata
     8401 aataacactc ctaatataca aaataccacc acaaatactc caagtgcagc tttagtttca
     8461 caagatagtg tgatatctaa ggttcaaagc aagcattttg aagcacaaat tgactctttt
     8521 ggtagaattt ctgcttttta tttaaaagat aaaaaatacc aaaatgagaa aggagaattt
     8581 ataaatcttg ttagcaagga aaatagtcct tatcctttag aaatgcgttt tagtgatcca
     8641 agtattaact cagaggcttt taaaattcct tatgttgcta atgctagcaa tctttttgtt
     8701 gatgaaaatg gaagtcaagt tttaaaactc actcaaaatc tttctggatt gaaaatcgaa
     8761 aaagatatta ctttttatcc aaaaggaaat tatgagatag aagttaaact cagcaagaat
     8821 gcaaattatt ttataagtcc aggatatcgt ccaaatattg ccgtagatag ttatacagtt
     8881 catggtgctt tggtaatgga taataaagaa accatcgaaa cttataaaga tggagatgta
     8941 gaaaaggatg aaagtgctaa taatgtcgta atgacttcgg cttttgatag atactatgca
     9001 actttctttt ataattttga taaaccttta aatgtggcaa tcagcaagga tgctaatcaa
     9061 aaccctatag tttttgctta tagtgataat gaatttaaag cagggggcta tataggctct
     9121 aaagaacatg tgattttaag aagtatagat ccacgccttg aagcagttgt tgaatatggt
     9181 tggtttactt ttattgctaa gcctatgttt gagtttttga atttcttgca tcagtatata
     9241 ggaaattggg gttgggctat cgttgtgatg actttaattg tgcgtattat tttattcccg
     9301 ctaacttata agtctatgat ttctatgaat aaacttaaag atcttgctcc taaaatgaaa
     9361 gatattagag agcgttataa aggcgatcca caaaaaatga atatgcacat gatggagctt
     9421 tataaaaaac atggtgcaaa tcctatgaat ggttgtttgc ctatactttt acaaattcct
     9481 attttctttg ctatttatcg cgttttgctt aatgctattg agctaaaagc agctccttgg
     9541 gcgttttgga tacatgattt atcggtaatg gatccttatt tcattttgcc tattttaatg
     9601 ggtgcaacga tgtttttaca acaacttatt acacctatga ctatacaaga tcctatgcaa
     9661 gctaagatta tgaaattttt accagtgatt tttacttttt tctttatcac tttcccagca
     9721 ggacttacgc tttattggtt tgtaaataac ctttgttctt tggttcaaca atgggttatc
     9781 aataaaatat ttgctaaaga acatcacaaa aaacaagcgg agcatgaaaa atgaaaatcg
     9841 aagccattga tcttcaaagt gccttaacag aagcttcaag aagtttagaa tgttctgtga
     9901 tggacttaga atatgagatt attcagcatc caagaaaagg tttttttgga tttggaagaa
     9961 aaaaggcaat tatagaggct aaggcaaaaa aaaggatttt gaaaaaaaat cctaaaaaag
    10021 aatttacaag ttcaaaaaat cacaaaccag aaacacatga gccaaaacaa gaaaacaaga
    10081 ttgaaacaaa aaatgaaaaa aataaaagcc aaaaagaaaa atatacagta aaaagtgatg
    10141 aaatttttga tagttttcat cgagaaagca aaggagtgcg taatactcag gatattttag
    10201 atgagattcg cattcagctt gtaaaacttt tagaaagctc ccagtttaaa atagagctta
    10261 gtgaacttag aatgtatgat gaagattgcg ttttgattcg attggatggg gaagatgctg
    10321 ctttgatgat aggtaaagaa gcacatcgtt acaaggctat ttcttatctt ttacataatt
    10381 ggatcaattt aaaatataat cttttagtgc gccttgagat cgctcaattt ttagaaaatc
    10441 aaattcaagg tatgcagctt tatttacaaa acgtgattga aaaaattaaa attcatggac
    10501 gcggacaaac caaaccttta gatggggttt tgataaaaat cgctttagag cagttaagag
    10561 ctgaatttcc agataagtat gtaggaatta agcaaaataa tgatcaaaga tttgttgtaa
    10621 taaacgactt tttcaaaaaa gatgagtgat actatagcgg ctattgccac agctcatggt
    10681 gtgggttcga tttctattgt aagattaagc ggtgaaaggg ctttagaatt tgccttaaag
    10741 cttagccaca aaaccaaact taccccacgc catgctactt ttacaaaact ttttaatcaa
    10801 aataatgaaa ttatcgatga agctataatg atatatttta aagcccctta tagttttaca
    10861 ggggaagata tagtagagtt tcaaactcat ggaggattta gtgtgagtga agttttactc
    10921 gaagaacttg tgagtttagg agcaagactt gctttagcag gggaatttag caaaagagcg
    10981 tgtttaaatg gcaaaatgac tcctttaaaa gctttaaata tacaagatct catactttca
    11041 aaatctgcac ttgcagctaa aattatagca cgcaacatgc aaggaaactt aggaaaactt
    11101 ttagaaaaaa ttcgcataga tttggttaaa actttagctt ttgtagaaac tagtattgat
    11161 tatgctgatg atgatttacc ttttgattta ttagaacaaa tttctactat gtgtgaagaa
    11221 aattctaaaa ttttaaaaga aatttatacg ctttctcaaa gcaaaaaagg actcatagaa
    11281 ggttttaaaa tcgctattgt aggtaagcca aatgtaggca aatcttcgct tttaaatgcc
    11341 ttgctttctt atgaaagagc tattgtttca gatatagcag gcaccactcg tgatactata
    11401 gaagagagct ttaaattagg aacgcattta ttacgcatta tagatacagc gggtattagg
    11461 gaaagtaaag atgttataga acaaatcggc gtagctttaa gtaaaaaaag tttagaagat
    11521 gcagatatta ttttggcagt ctttgatgct tcaagagtgc aagataaaga agatgagaaa
    11581 atttttgact tattagcaaa tactgataaa aaaatctttt ggattttaaa taaaagtgat
    11641 ttagaaaatg ttttcaaaaa tactcaaaat aaaaatttta tcaagcttag tgctcaaaaa
    11701 gacatcactt tattaaaaga agaattgcaa aattatttta attcttttga tagcgaaggt
    11761 attatggtaa gttctttaga tcttattaat gcttgtaaaa tttcaagtga agcgattttt
    11821 agagctaaag ggcttttaga ggaaagttct ttagaacttt ttgcttttga gcttaattta
    11881 gcgattaatg aacttgcaag atttaccaaa gattttcaaa gagatgaaat tttagacgaa
    11941 atgtttggta atttttgttt aggaaaatga aaggataaaa atggacaaag aaaccataaa
    12001 agcacataaa atcagtgatg aagaatatgc acaaatttta gaaattttag gacgcgagcc
    12061 aaatttatta gaacttgggg ttatttctgc gatgtggagc gagcattgct cttataaatc
    12121 cagtaaaaaa tatcttaatg gttttccaac taaagcacct tgggtgattc aaggcccagg
    12181 agaaaacgca ggggttattg atattgggca aggtatggca gcagttttta aggtagaaag
    12241 tcacaatcat cctagcttta tcgagccttt tgcaggtgcg gctacgggag tagggggaat
    12301 tttgcgtgat gtttttacta tgggtgcaag agtggttgca gggctaaatt ctttaaaatt
    12361 tggcaatatt catgatgaaa aatgcggcaa acatcaaaaa taccttgtta aaggtgtggt
    12421 aaatggaatt tctcattatg gaaattgcat gggtgtgcca actataggtg gagaatgtgc
    12481 ttttgatgag tgttttaatg gaaatatctt agttaatgcc tttgctttag gggtttgtaa
    12541 aagtgaagat atcttttatg ctaaggctga aggtgtagga aatcctgtga tttatgtggg
    12601 ttcaaaaaca gggcgtgatg gacttggtgg agcggttatg gcaagtgata gcttcaatga
    12661 agaaagcaaa tctttgcgtc ctacagtgca aattggcgat cctttcagtg aaaaacttct
    12721 tatggaagct tgtttagagc tttttaaaac tgattatatt gtgggtattc aagatatggg
    12781 tgctgcaggg cttacttcaa gttcttttga aatgacagga agaagtggca gtggcatgaa
    12841 actttactta gataaaactc ctatacgtga aagcggtatg actccttatg agttaatgct
    12901 tagcgagtct caagaaagaa tgcttatttg tgcgaaaaaa ggctatgaag ataaggttat
    12961 agaaattttc aaaaaatggg atttagatgc tgtggttata ggtgaagtta ccaatacagg
    13021 aaaaatggag cttttttggc atgatgagct tgtagggctt attcctatcg agcctctaag
    13081 tgaaaaagcg ccgattttaa gtcgtcctat aagtgagcca aaatatttaa gtgaaattaa
    13141 agattataaa tttgagctaa aattaagcat tcaagagctt tttatacaaa tgcttcaaaa
    13201 tgaaaatatt aacaacaaag cttttattta tgatcaattt gattcaagtg tgcaaaccaa
    13261 tactataaaa gctgatggaa gattaggtgc tagtgccatt cgtatcaaag aaaatggtgc
    13321 aagtgtggct atggctatag aatgtaactc acgcttaaat tatgtaaatc ctaaaatagg
    13381 agcagcttta gcagtagctt cagcaggaag aaaagttgct tgcacggggg ctaagccttt
    13441 ggcaataagt gattgtttaa attatggaaa tccgcaaaat cctgaagtga tgtggcaatt
    13501 tgcacaaggt tgcgaaggca ttaaagaagc ttgtaaagag ttaaataccc cagtagtaag
    13561 cggcaatgtt tcactttata atgaaactga aggcgtaagt atttatccaa gtcctactat
    13621 agtaagcgta ggggttttag aagatgcaaa taaaacctta aaagctagtt ttgaaaaaga
    13681 aaatttaagt gtttatcttt tgggtgaaag tttaggggaa tttggtggat ctatggtaat
    13741 gaaaatccaa gataaaaaag tatcaggaag tcttaaagag cttgattata aagctgaaat
    13801 tgcactttgg gatttgcttt ataaagccaa tcaaaattct ttacttgagt gtgccaatag
    13861 cgtaggaata gggggtattg ctatgacttt ggcaaaaatg tttgctattt ctagtgtggg
    13921 tgtaaattta acaagtggtt ttgatgatga aaaaatgatt tttgatgaga gtgcaagtcg
    13981 tgctatagta gggcttagca aagaaaatga agaagctttt ttaaatttag ccaaagaatt
    14041 tggagtaaaa gcttataaat taggtgtgag tacaagccaa aaacatttta aacttgataa
    14101 cattgagtta agcaaggctg aacttgacaa gctttatttt gaaagtttta aagagcaaat
    14161 ccaatgactt tagttttaat tatactcgtt attttggtgt tttactggta ttataaaact
    14221 tggggaaaac aggatttttt aaactcagct gcaagaggag ccaaaggctt tgctaagggt
    14281 tttgttcgtg gggttatgga agaaagaatg gatgagttta aaaggcgtat gaattactat
    14341 gttatcgtac ttttggcaaa aattgcaaaa agtgatggta gggtaagtga aaatgaagct
    14401 gaaatgatca aagatctttt agatgcaaat gccaaagatg aaaaagaaag agctttttta
    14461 aaagcaagtt ttaatgaaca taaagaaaat ttaagtgatg ctttttatgt ggcaaaagat
    14521 tttttaaaag aagtgccttt gcctaaaaat gagcgtttta atgtcttgcg tgtgcttgtt
    14581 tttatggctt taatcgatgc agattttaat gctaaaaagc gtgaaatttt agagcaaatc
    14641 gctaaagcct ttgatatagc aaaaagcgaa ttagacgctt ttatagcaag tctttcaaat
    14701 ttaaaaagta ctaaaaaaga attaagcctt gatgaagctt ttgctatttt agaactttca
    14761 aataatgcgg atttaaatgc ggtaaaaaaa caataccgca atttagcaaa aaaatatcat
    14821 cctgatattt taaatgcaaa caatgttagt gaagaagagc ttaaaatcgg tgtagagaaa
    14881 tttcaaaaaa tcaacgaagc ttacgaaaaa gttaaaaaat atttagaaag gtaaaaatga
    14941 gagcattact tagtgtgagt gataaagaag gcatagtaga atttggcaaa gagcttgaaa
    15001 atttagactt tgagattctt tcaacaggcg ggacttttaa gcttttaaaa gaaaatggaa
    15061 taaaagttat agaagtgagt gattttacaa agagtcctga gctttttgaa gggcgtgtga
    15121 agactttgca tcctaagatt cacggtggga ttttacacaa aagaagcgat gaaaatcata
    15181 tcaaacaagc aaaagaaaat gaaattttag gcattgatct agtttgtgtg aatttatatc
    15241 cttttaaaaa aaccaccatc atgagcgatg attttgatga aattatagaa aatatcgaca
    15301 taggtgggcc tgcgatgata agaagtgcag caaagaacta taaagatgtg atggtacttt
    15361 gcgatccgct tgattatgaa aaagtgattg agactttaaa aaaaggtcaa aatgatgaga
    15421 attttcgttt aaatttgatg ataaaagctt atgagcatac ggcaaattat gatgcttata
    15481 ttgcaaatta tatgaatgaa cgctttaacg gaggttttgg agcgagtaaa tttatagtag
    15541 ggcaaaaagt atttgataca aaatatggag aaaatccaca tcaaaaaggg gctttatatg
    15601 agtttgatgc cttttttagt gcaaatttta aagctcttaa aggcgaagca agttttaata
    15661 atctaaccga tattaatgca gctttaaact tagctagtag ctttgataaa gctccggcta
    15721 ttgctatagt aaaacatgga aatccttgtg gttttgctat aaaagaaaat ttagtacaaa
    15781 gctatataca tgctttaaaa tgcgatagcg ttagtgctta tggaggagtg gttgcaatca
    15841 atggaactct tgatgaggct ttagcaaata aaatcaatga aatttatgta gaagtagtca
    15901 tcgcagccaa tgtagatgaa aaagctttag ctgtgtttga aggtaaaaaa cgcattaaaa
    15961 ttttcactca agaaagtcca tttttaatcc gcagttttga taaatatgat tttaaacata
    16021 ttgatggggg ttttgtatat caaaacagcg atgaagttgg cgaagatgag tttaaaaatg
    16081 caaagcttat gagtcaaaga gaggcaagta aggaagaatt aaaagatctt gaaatcgcca
    16141 tgaaaatagc agcatttacc aaatcaaaca atgttgttta tgtaaaaaat ggcgctatgg
    16201 tggctatagg tatgggtatg acaagcagaa tcgatgcagc aaaggcagcg atcgctaaag
    16261 ctaaagaaat ggggcttgat ttgcaaagtt gcgttttagc aagtgaagcc ttttttcctt
    16321 ttagagatag catagatgaa gcaagtaaag taggggttaa agctatagta gaaccaggcg
    16381 gaagcataag agatgatgaa gtggtaaaag tagccgatga gtatggtatg gcgctttatt
    16441 ttacaggagt aagacatttt ttacattaag tttaatggaa tgttatgttt tttacacata
    16501 attcaataaa aattaaataa attatgtgta aaatatttcc gaaaaatttt atttttagga
    16561 aactatgatg tttaaaacta taggatttaa ggtttctgct gcaatttttg tggtgttact
    16621 tataagtttc attgtaatgc aagtgatttt aaatttggat tttaaaaata ctgccaataa
    16681 aatgagcagg gcaaatttaa ataccgtaag tacttctgtt tttcaaacaa tgagaatggc
    16741 tatgaattta ggagatcctg aaaaaattaa agaagccatt gaagatgtaa aaagtataag
    16801 agggtattag tgatattaaa atttatcctt caaaagatac tatagatctt tttgagataa
    16861 aagcccctca aatttcaaat gataagcgta ttatagaaca attttcaaat cctaaaattc
    16921 aagctttgga agaaaatata aatggtgttg tgtatttaag attgatacgc cctttgattg
    16981 cagatgaaag ttgtattact tgtcatgaaa tcctaatgca ggaagtgtga ttggggttat
    17041 ggatatatca cattctttag aaggtgttta aaaagatata agtaaaaccg gtcaatctta
    17101 tattataata tttactattg ctttgatttt taccctttgt ggtggttctt ttaatgctta
    17161 aagttgttgt tggaaagccc gttttagagc ttttaaatca tgctaaagaa ttagctcaag
    17221 gaagcggcaa ttttaaaagc tcgtatttta gttaaaggtc aagatgaaat tgctttagct
    17281 tgtggatata tcaatcaatt tatcgaaaaa actcacaagg cagttagcag tgcaagtcat
    17341 aatttaaaaa atgtagaaaa acaaagcaat cttttaaatt caaatgctat tttttaagtg
    17401 atatcagttc acaaagtcat aagcaaatag atcaaagttt taaacttggt gcaaatgttg
    17461 gcaatgaact tagagaactt gctagtttgt caaataaggc aaatagtgcc aatgaaaaat
    17521 cctttttatt attagagcaa atgcttaaat ctttgtttaa tgttgctaat aaagtatcaa
    17581 tagtatccca aaatgaaaat gaattggcta aaaaagttga aaacatggtt aatcaagcag
    17641 gtaatataca aaaagcaact caaatgatgg ataagatcgc agataaaaca aaattaccat
    17701 ccctaaatgc tgacatagaa gtagctaggg ctggtgcatt tggactaggt ttttctgtaa
    17761 ttgctgagga tgataggcag ttggctcaga acagtgaaga atttttggga aatgtagctc
    17821 aaattacaaa agagcttttg caaagtatta atgaggttaa cgcagaatta aagaaaaata
    17881 ctcaaagtat acaagcttta aatgatgaca ccgctttatt ggttgatgat gctaatgagg
    17941 ttaaattatg taacgaagat gctagggctt tggtaactca atgtactgaa aaaataaaaa
    18001 tttcccaaga gaatatataa aatttacttt ctcgtatgca agaaaatgtt gaagtaagtg
    18061 aaaagaatga agaaatttct aaaattctac ttcaagttgt agatgagtta aaaatagtgt
    18121 gtcataatct cgaaagcgaa cttaaccaat tttaaattta aaggaataaa atgaaaaaaa
    18181 cgcttcaaat tgctttagct gcaacttttt ttgcaggttg tgctagtact tctgttactt
    18241 catctacttc taaaggtaat aatgaacttg tacaaaatca gcttttcaaa atagaaaaaa
    18301 ttatagttaa tggtaaaact tttgatccaa aaaacgcaga ggaaagtcca aatattagtt
    18361 ttgaaaataa taaattttat ggttattcag ggtgtaatcg tttttttggt tcttaccaaa
    18421 ctaaggcgga tgctttgcaa atcgaaggtg atcgcgtagc ttcaactcaa atgctttgtc
    18481 atccaatgga tgtaatggat tttgaaaatt ctttcctttc aaatttcaaa ggaattttta
    18541 aaatttcaaa tgaaaatgga aaacttgttt taagtaatga tgaaatgaag atctttttta
    18601 aataataccc taaagcctcg aaatatcgag gtaatcttct taaatttgac aaaagtctaa
    18661 aaaatgatac aattataatt ttattatcaa aaaaggtagt taaatgataa aatcaattcc
    18721 tgaatggagt gagcaagaat acctcatgct ttctttaccc catgaaaaaa gcgattggaa
    18781 tccctattta gaggaaattt tgcaaagtta taaagaattt gtaaaagcag tgagtgaatt
    18841 tcaaaaagtt ttacttatgg ctcctaaaca gagtgatttt gaaaatttta aagatataaa
    18901 aaatgtagag tattttaaat gtgataccaa tgatacttgg atacgtgatt ttggagctat
    18961 agatataata gaaaatggtc gtttaaaggc tcttgatttt acttttaatg cttggggaaa
    19021 taaatttcaa agtgagcttg ataatgctgt aaattctaag ctttttaaag aaaaatttaa
    19081 agaggaactt aaaaaggttg attttatttt agaaggagga agtattgact ttaatggaga
    19141 gggtgtgatg cttacaagct ctcattgtct tttaaatgaa aatagaaatt ctcatctaaa
    19201 caaaacccaa attgatataa aattaaaaga aatttttggt ttaaaacaaa ttatttggtt
    19261 agaaaatggt ttcataaaag gtgatgatac ggatcatcat atcgatacct tagcaagatt
    19321 tatagataaa aataccatag cacattgtat ttgtgaagat gaagaggatg agcattattt
    19381 gcctttgcaa aaaatgaaag aagagcttaa aaaaacaggc tttgacttag tagaacttcc
    19441 tatacctaag cctttatact atgaaggaag aagattgggc gcaacttatg cgaattttgt
    19501 ttttataaat aatgctttaa ttgtgccttt ttataaggat aaaaatgatg aaatcatagc
    19561 taaaagactt tctaaagctt tacctagtca taaaattata ggagtagatg caagagtgtt
    19621 tttacgacaa aacggttctt tgcattgttc ttgtcaaaat cgtttcaaag gtttaagatg
    19681 agtttgcaaa aaaaagcaac tcttgtagca agtttatgtg ccattgtttt agccttggtt
    19741 aaatttatag taggcttaac aagtggttct gttgcagtac tttcaagtgc gattgattct
    19801 ttaatggatt ttgctatttc tgcttttaat tttttggctc ttaaaaaaag ctcacaaaag
    19861 gcgaatgaaa attataattt tggtttttct aaaattgaag ctttaatggg tttgttagaa
    19921 ggtgttttta tagttggcgt ggggattttt attttttatg agagtatttt aaagatttat
    19981 tataaagaag aaattaaaga tttaaattca agcatctatg tgatgatttt tgctttaatt
    20041 atgacttttt ttcttgtact ttttttaaat tatgtagcta aaaaaaccaa aagtttaatt
    20101 atagaaagtg atgctttgca ttacaaaaca gattgcttaa ccaatgcttg tactttaggg
    20161 gctttggttt tgatttattt tacaaattta catattattg atgctatttt tgggatagtg
    20221 atcagtcttt atacggtatt ttctgctttt aaaatcatta aaaaagcttt agctttttta
    20281 atggatgagg ctttacctaa ggaacaagtg gataaaattt gtactttgat ttctaataat
    20341 cctgaaataa tttcctatca tgaattaaag acgcgtaaaa ctccaagttg taattattta
    20401 agcgtgcatt tggttttttg ccctataatt tcgcttttaa atgcgcataa aatttcagat
    20461 gaaatagaag aaggtgtgcg taagatgttt gaaaatgaaa aatgggatat acaaattcat
    20521 ttagatcctt atgatgatgc agaacaagaa aggcaaagac aatgaaaatc gctttaatac
    20581 aacaaaaatt tcatttaaat aaagaacaaa ctataaaaaa aacttgcgaa tttatagaag
    20641 aagcctctaa acaaggagct gagcttgttt gcttaggaga acttcatcaa agtgagtatt
    20701 tttgtcaaag tgaaaatgtg gatttttttg actatgctaa tgattatgaa aaagatgtga
    20761 aattttgggc aaatatagct agaaaaaatc aaatagtgct tattgcttca ttgtttgaaa
    20821 aacgaagtgc cggactttat cataatactg cagtggtttt tgaaaaagat ggttctatat
    20881 caggtaaata tcgcaaaatg cacatacccg atgatccttg tttttatgaa aaattttatt
    20941 ttactcctgg agatttgggt tttgaaccta taaatacaag tttaggtaag cttggagtgc
    21001 ttatttgttg ggatcagtgg tatcctgaag cagcaagaat tatggcttta aaaggagctg
    21061 agattcttat ttatcccacg gcaattggtt ggcttgataa ggatgaagat gaagaaaaac
    21121 aaagacagct caatgcttgg cttggcgtac aaaaaggaca tgctatagct aatggtttat
    21181 atgtagtagc tatcaatagg gtaggttttg aaaaagatgt aagcggggta gaagagggca
    21241 ttagattttg gggaaattct tttgtttttg gccctcaagg tgaagaactt tgtcttttag
    21301 attctcaaaa tgaatgtgta aaaatcatag aaatagataa aaaaagaagt gaaaatgtgc
    21361 gtcgttggtg gccttttttg cgagatagac gcatagaata ttttgcagat ttaactaaaa
    21421 gatttattga ttaaatcaat aaatcttatt tgttttgtat attttcaaga tagcttttta
    21481 tttgctcttt ttcttgttcg tttaaattta taaaacttat ttctttaagt cttgataaaa
    21541 gcaaattatc ttctaaaatt tcattttttc ctatttctaa agaagtgatg acgctagaac
    21601 ttatgagaag tctttgggtt gcatcttttc ttaagcccca tatattatgt atggcaatat
    21661 tattatctgt aatttgtcct gcataaagca taatatgtcc aggtaaataa agtaaactaa
    21721 gataagcttt cccaaagcgg tttaaaaaat cttttttttg agaattacta agagtgctta
    21781 tatcaaaatg attaaaagaa tttttttgtg cagctgaatt tcttggtaga taaagtccaa
    21841 aagctgaaaa gatatcacga gttagtaaag aacaatctct ttcaaaatta taaccgcccc
    21901 agccataagg caaatttaaa acttgtgaaa gttgattttt taaattttta tcattgaatt
    21961 gtaaaggaaa tttagataca tcttttttag aaattttata ttttttagaa cctatttttc
    22021 cataaaaata gtttttatct tctttgtagt aaggatagat agcaccaatt ctactttcaa
    22081 ataaaaattt accatcctcg ctatagatag caaatttttc ttttagtggt gtgataaagt
    22141 tgagattttc atagattttc gctctatcgt ttgagaaaaa ttccaaattt ttactttcaa
    22201 caaatccaaa tccagcttca cctaaaacaa aagcataacg cttatcttta ctaaaatgtg
    22261 aaattaagac aggggctcca gtatttaaaa tgccatcgct tgcatagtca aaaggaattc
    22321 cttcattttc aaaaaaagga ttttttaaga tagctctttg ggttggaaga tttttaatga
    22381 ttgtattttg gataattaaa gctttttgat taagtttacc gaattcttgg atatttgcgt
    22441 tatttatagc gtttttaaac catgaaagtg gaataatttg tttattgaaa aaataataag
    22501 tattttttga atttaaatat aaaggaaagg accaaaaaat attttgtcct ttgtaatttt
    22561 taaatgaatc atgccaaggg ttaaagaaat attttttata tcgttttgca tcaaaattaa
    22621 tatcgtaagc aaattgtggc aaaatgttta cattttgttc gtattcaagt tttacataat
    22681 gttgattttc atttttttgt tctaaatttt cacgatgaag tgaagttaaa ttttttgttg
    22741 aacaagctgt taaaaatagc actataaaag taaaatataa acaagatttc ataatcaacc
    22801 ttttagaaaa aatagttata attaaagcca aggaaatata atgtttgata aactagaaaa
    22861 aattttagct tatgataatg tttttttaag tggtggtgct ggagttggta aaagcttttt
    22921 gacaaatgag cttatcaaat cttatagaaa acaaaaaaaa ttagccatag ctcttggttc
    22981 tagtgctcta tcggcgttta atataggcgg tgttacttta cacagctttt tttgtttagg
    23041 gtattgtgat gatatgatga aattaagtgc attggatcgc aatcaaaaac aaaaagaaaa
    23101 attaacaaaa cttaaagagc ttttaaaaac gattgagctt attattatcg atgaaatttc
    23161 catggttagt gcaaatgttt ttgaaatgat aggctttaga cttaaaaatt ctcaatttaa
    23221 tggaaaaatt ttagttgttg gagatttttt tcaactgcct ccagtaatta aagaaaaaaa
    23281 agaaacttta tttaaccatt cttattatgc tttttcttca tttttttggc aagatttaaa
    23341 ttttaagaat attaaacttt ctcaacctaa aagaacgcaa aatatggaat tttataacca
    23401 tttatctttg attagacaag gttttttaga tgaaaaaatt ttaagctttt ttgaatcttt
    23461 gcgaattgat tataaagaat tagaaaattt agaagatgat tatactttac tttgtggtat
    23521 caataaaaaa gtaaacaata tcaatcaaga aaaattaagc aaacttgaga ccccgcttgt
    23581 atgctttaag gctcaggtta aaaaagaaga taagagaata aaagatgaag agcttgattc
    23641 ttggattaga agcttaaata tattggaaga attaaatatt aaaataggcg ctcgtattat
    23701 tttttgcgta aataattggg ataagaatta ttataatgga gagcaaggca ttatagaaga
    23761 tattctttat gaagaggaga aaatttatat tagcattatt aaaaataatg ggatgaaaat
    23821 tttacttgaa ccttatactt ttttcatgga agaacttgag caatcaggta aagattttgt
    23881 tgttaatatt ctcgcaagtg ttacacagtt tcctattaaa ttagcttatg ctattactat
    23941 acacaaatca caaggtatga gtattgaaaa attagtgtgt gatattgatc atatttttga
    24001 aaatggacag ctttatgtcg ctctttctcg cgctacaaac ccaaatactt taaaaattta
    24061 ttctacaaaa aagataaatt ttggatttta ttttgctaat attttaaaaa tagattctaa
    24121 tgtgattgaa ttttataaaa aacataattt tttagatctc gaaatacaag aacaaatcat
    24181 ttaaaggcat taaatgaaaa aaatattttt aagtgttttt ttggttttga gtttaaatgc
    24241 tcaaaatctt gaaatagata aaataagaac agatttgtat tctaaaagtg gagcaaatgt
    24301 tcttaaaaaa gttgaaattt ctttggaatt tgatgggaat aatttaaaag aaaatgaaaa
    24361 taagttaatt gatgctgtaa atacagtaat ttcagggttt ttttatgaag atatttttac
    24421 agaaattgga aaaaataatt ttaaaaaaac tttagaaaaa tttttagata agaaatataa
    24481 gattaaacta gatgatatat atatcatatc tttaagtgga gtggaaaaat ttgatttaga
    24541 ggagtttaaa cgctttttag aaagtactga ggctaaagag aagggtatgg gtagcgaggt
    24601 aaaaaaagca cttgaaaact tagaagttcc taaaactcaa gttcctagtg ttgaaaagat
    24661 cccaactcct agtgttccaa atttagaagt caagcaagtt gaacagcttt tcaaagatcc
    24721 agatgaagaa aataaaaatg acaatggaga aatcaatata gataatttaa atacacctaa
    24781 aataactcca gatatagaag aaaaaattaa aagagattta atcgccaatc ctccacaaat
    24841 attcaaagaa aataacgcaa gcaagcctta tcatttgcca caaacaggct atgatataaa
    24901 gcttgatgag aattcaacgc aaaattagcg aactatatca taattttgcg gaatttttgc
    24961 cttgaaaata tcggagttga tttttggatt tttaatttga ttgtttagat tgattataac
    25021 atcattttca aattcatctt tataggatat gctttgaatt tgctcttgat taagcttaat
    25081 tgtatagttt atattatcat attttgctgc aagtttatcc ttatctataa gacttgcttt
    25141 tttgaaaatt tcattaagat ttggaatgtt atcaagatga gagaaaatga cttgttctag
    25201 atcgtgctct actatggtta cttgattttt gttgatataa atctcttttt tactaggagt
    25261 atcataactc caatatgctt gatctttgct cagtataaaa tgcccagaat aagaaagtgt
    25321 agagtttttg gatttcacta tttgggtaaa attgcttgaa aaggtattaa aattaagatc
    25381 aagggcaaaa agttgtccta taaaaataaa aaatatcaag aatgtttttt tcatttattt
    25441 tccttaaaaa aatatatttt ttatgtcatt ctagctaatt ttaattaaat aatcgttata
    25501 atgatagttt gaaaaattta taaaggttta aaaatgtttt taaatacttt aaaagccgtg
    25561 tttggcacaa aaaatgatcg tgaaattaag aaatatttca agcgtgtagc acaaatcaat
    25621 gctttagaag gcaactatca aaatttaagc gatgatgaat taaaagccga atttgcaaaa
    25681 tttaaagagc aaattttaag cggagaaaaa aacgaaaatg atgttttaaa tgatgttttt
    25741 gctatagtca gagagacagg taagagaact ttaaatatgc gtcattttga tgtgcagtta
    25801 atcggtggta tggttttgca cgatggaaaa atcgcagaaa tgaaaacagg agaaggtaaa
    25861 actcttgtag caaccttacc tgttgtttta aatgccatga gtggcaaagg cgtacatgtc
    25921 gttacagtaa atgattatct agccaaaaga gatgctgagc aaatgagtgc gatttataat
    25981 tttttaggtt ttagtgttgg cgtggtgctt tcttctcaaa atagtgatat agaacacaag
    26041 caagcttatg attgtgatat tacttatgga accaataatg agtttggttt tgattatttg
    26101 cgtgataata tgaaattttc aaaagctgaa aaagttcaaa gagagcataa ttttgttatc
    26161 gtagatgaag tagatagtat tttaattgat gaggcaagaa ctccgcttat tatcagtggt
    26221 cctacaaatc gtactttaga tggttatatt aaagccaatg aagtagctaa acaaatgcaa
    26281 aaaggtgaag cagttttacc ccctgcaaaa cctgagggtg attttgtagt agatgagaaa
    26341 aatcgtaata ttttaattac agaagcaggt attgctaagg ctgaaaaact ttttggcgta
    26401 gaaaatttat acagtcttga taatgctatc ttagctcatc agcttgatca agccttaaaa
    26461 gcacataatc tttttgaaaa agatgtgcat tatgttttaa gaaataatga agttatcatc
    26521 gttgacgaat ttacagggcg tttaagcgaa ggacgtcgtt ttagcgaagg attgcatcaa
    26581 gctttagaag ctaaagaaaa tgtaaaaatt caagaagaaa gccaaactct agcagatatt
    26641 acttttcaaa attattttag aatgtacaat aaacttgcag gtatgacagg aactgcacaa
    26701 acagaagcga ctgaattttc tcaaatttat agtttagatg ttatttctat accgacaaat
    26761 attcctatta aaagacaaga taaagatgat cttatctata aaactcaaaa tgaaaaattc
    26821 aaagctgtaa ttgaagagat taaaaaagcc aatgctaaag gtcagcctgt acttgtagga
    26881 accgcaagta tagagcgcag tgaagttttt cacaatatgc ttgtaaaaga gaaaatccct
    26941 catcatgttt taaatgctaa aaatcacgag caagaagctt tgattatcca agatgcaggt
    27001 aaaaaaggtg ctgtaactat cgctacaaat atggcaggtc gtggtgtaga tataaaaatc
    27061 gatgatgaga ttagggcttt gggtgggctt tatatcatcg gtacagaaag acatgaaagc
    27121 cgccgtattg ataatcaact tcgtggtcgt gcaggaaggc agggtgatcc tggaataagt
    27181 cgtttttatc taagtttaga agataatctt ttaagaattt ttggtgggga tcgtattaaa
    27241 agtattatgg atcgcttggg catagaagag ggcgaaagca tagaatcaag aatcgttaca
    27301 agagcggttg aaaatgcgca aaaaaaagtt gaaagcttgc attttgaaag cagaaagcat
    27361 ttgttagaat acgatgatgt agcaaatgaa caaagaaaaa ctatttatcg ttatcgtaat
    27421 gagcttttag atgaaaacta tgatattaga gctaaaattt ctcaaaatat cgctgaatat
    27481 agcgcaaatg taatgaatga ttatatgctt gacgaaagcg gttctaatgt aaattttgaa
    27541 aatttgaaag caaaaatttt gtatgaatgt tcaactcaga ttagtgaaaa agattttgag
    27601 aatttaagcg tcattgaaat gcaagacaag ctaagtcaaa ttcttgaaaa ttcttataat
    27661 gaaaagatgt taagacttga gattaaagaa ttgcgtaata tagagcgtat tttatatttg
    27721 caagttttgg ataatgcttg gagagagcat ttgtatcaaa tggatatttt aaaaacagga
    27781 ataggacttc gtggatacaa tcaaaaagat cctcttgtgg aatataagaa agaaagttat
    27841 aatcttttct tggagttggt caatcgtatt aaatttgata gtattaaact actttttagc
    27901 gtgcaattta atcaagaaga ggcgcaaaat ttagaaaata aagccaatga agaaaatgaa
    27961 aagctacttc aaagctcagt agaaatgggc gcaagcgaag ataatcttgg cgaagctgaa
    28021 tttaaaaaag ttccacgcaa tgctccttgt ccttgcggaa gtggaaaaaa atttaaagaa
    28081 tgccatggaa aaagtggtcc taagcaagga attttagctt gaataaaagc gttttaaaat
    28141 atttactttt taagtattta agatttgata aagagcaacc ctttatcaat ctttctatgc
    28201 ttttggcctt tttaggagtt tgtgtaggac tttgcgtttt gcttgtagct atggcaatta
    28261 tgaatggttt tgataaagaa tttgaaaaac gcttttttgt gatgaattat cctattacta
    28321 ttttgcctaa attctacgct cctgtaaatg atgaatttat agatgagtta agaaaaacat
    28381 ttccaaattt gttatttagc ccttatttaa gcactcaagt tgttgtaaag ggagataatc
    28441 gttttgaagg tggtgtgctt tttggcgtta attttaatga tgaaaaaaaa ataaacgaag
    28501 tggttgctaa agctttaaag gatgagaatt taagtggttt tgatatactt gtaggatcag
    28561 cacttactga tgaatttggt ttgcataaaa atgacaaact ttcacttatt ttttcaaatc
    28621 ttaatcctag tggattttct ttagtaccgc aaactaaacg ttttgatgtt aaagcgcgtt
    28681 ttacttcagg gcttgcattt tatgataaag cttatatgta cacagatgtt gatgcattga
    28741 aaaaagtact tggaatacct aaaaatccaa attatgatgg aattcatgta tatagcgata
    28801 atgcttttaa ggatgttgaa aaaattaaat cttatttaaa agatgattat gctgtggtgg
    28861 gttggtggga gcaaaataaa aatttttttt cagccttaga acttgaaaaa agagcgcttt
    28921 ttatagtgtt gatgcttatt attttggttg caagtttaaa tatagtaagt tctttattga
    28981 tgatagtaat gaatcgtcgc agtgaaatag cacttttact tgctctaggt gcaagcaaaa
    29041 atgaggtaaa aaagagtttt tttgccttag gtatgcttat tggtggtggt ggtatgatag
    29101 tgggtgtggt acttgcattt tttgctttat ggcttttggg aaattttgat attgtaactt
    29161 tacctgttga tgtttatgga accagtaaat taccacttga tttgtcttta atggattttt
    29221 ctttaaccat tgtgggtgct ttaataatca tagctttatc atctttttat cctgcaaaaa
    29281 aagcaactca aattaatatt ttagatactt taagaaatga ataaattgta attttggaga
    29341 tttttattgt ctttgtttac tcaaaaaaat aagaatttta aacctttaaa acctctatca
    29401 aagtcaaaaa taatcactaa tttaattctt ttgattttat ttttaatatt gttttgttat
    29461 tgtagtttta gtataagtgc ttatcatttt gattttagcg caattgcaac ctataaagaa
    29521 aaatttcttc aaggtttttt aaatacttta ataatcagtt ttttttcttt attgttgagt
    29581 ataattttgg gtggagtttt ttgtgctttt tctttaagtt cgattgtttt tttaagattt
    29641 ttatctacat tttacataga gcttgtcaga ggaacccctt tactagtgca ggtattattg
    29701 atgtattata tcattgcaaa taatttagga cttgataatc gatatgtggc tggagttatt
    29761 attttatcat gtttttctgc tgcttactta gctgaaatat ttagagctgg aattttaagt
    29821 atttctatat ctcagcttga gagcgctagg gctttagggt taaaagagat gcaggttttt
    29881 gcgtatgtaa tttttcccca agctttaaaa aatattttag caccactgag tggacaattt
    29941 gcaaatttaa ttaaagatag ttccttatta agcgttattg ctgtaaatga attaacccaa
    30001 agtgcgcaag agataaattc ttatactttt gctactcttg aagcttatgt aattttggct
    30061 attacatatc ttgttttgac tttacctata agtatatttt ctcgttattt ggagagaaaa
    30121 tgccaaaaat gatttaaaaa agcttgacaa atagagctaa ttttggcata atcacatttt
    30181 tatttcagaa aatgtctcgt tagctcagcc ggtagagcat ctccctttta aggagggggc
    30241 cgttggttcg aatccaacac gggacaccat tata
//
LOCUS       DBBXPZ010000012        29202 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.012, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000012 DBBXPZ010000000
VERSION     DBBXPZ010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 29202)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29202)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29202
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.012"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..666
                     /locus_tag="ACJFD7_000403"
     CDS             <1..666
                     /locus_tag="ACJFD7_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0814 family flagellar-dependent secreted
                     protein"
                     /protein_id="HGG0859248.1"
                     /translation="ISELSSDKTIGIMPKNYDKLTITNYYNTQEQYNEAEQLGMFGHI
                     NIGLQSLNFTPQSMQTQNLDKDTAIDTFNPDMSVYPQNEDGSYSKEALFMSFLKSTGV
                     SPREGSATLNPIAKSYAEAMTKESFDGSLTSLDDIMTGKVDFASLLKGYAQEGWLDAD
                     IYAMEKGVAWQNTSIGYGGAWFDREFNQVKANGWKASNQSIDSYVNSIMDRLNNLIGQ
                     TRV"
     gene            761..1531
                     /gene="glnH"
                     /locus_tag="ACJFD7_000404"
     CDS             761..1531
                     /gene="glnH"
                     /locus_tag="ACJFD7_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HGG0859249.1"
                     /translation="MKKIILIFISFFALNLSAKDLVVGMELGYPPFEMSDKTGKASGI
                     SVDFLEAFAKKNGYKLVVKNIAWDGLIPALKTAKIDLIMSSMTITDERKKVVDFSIPY
                     AKANLAILTPLNSDITNIKDLDKKGKVLALKRGSTGHLYAVKNLKNATINLFDKENAA
                     ILEVIQGKADGFFYDQLTIYRTWQKHQDTTRAILAPFQENPEFWGIAVQKGNAELKKE
                     LDEFIAESKKDGLFDSLGEKYLKDVKDTFKKNNLEFFF"
     gene            complement(1547..2281)
                     /gene="fliP"
                     /locus_tag="ACJFD7_000405"
     CDS             complement(1547..2281)
                     /gene="fliP"
                     /locus_tag="ACJFD7_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344227.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HGG0859250.1"
                     /translation="MKKILLFLLLSMSLFAAEATIPTVNLSLSAPNTPNQLVTTLNIV
                     IVLTILTLAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEP
                     VATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKT
                     IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISL
                     PFKLLIFVLVDGWNLLVQRLVESFVT"
     gene            2424..3713
                     /gene="glmU"
                     /locus_tag="ACJFD7_000406"
     CDS             2424..3713
                     /gene="glmU"
                     /locus_tag="ACJFD7_000406"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003977 - UDP-N-acetylglucosamine
                     diphosphorylase activity [Evidence IEA];
                     GO_function: GO:0019134 - glucosamine-1-phosphate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006048 - UDP-N-acetylglucosamine
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HGG0859251.1"
                     /translation="MKTSILILAAGLGTRIKSQKPKVLQELCQKSMILHILKKAFALS
                     DDVSVVLSHQKERVEKEILEYFPKTQILEQDLQNYPGTAGALSGFKPKNERVLILCGD
                     MPLVEQTSLEALLGNNAKLNLAVFKAKDPKSYGRVVIKNDSVEKIVEFKDANTQEKEI
                     NTCNAGVYVIDSRLLKELLPLIDNNNAAKEYYLTDIVKLAKEKDVMIKAVFVDEDEFM
                     GINDKFELSIAENFMQKKIKKYWMQQGVIFHLPQSTFIGADVEFVGECEVYENVRIEG
                     KSKIINSIIKSSSVIENSIVENSDVGPLAHLRPNCELKNTHIGNFVECKNAKLNTVKA
                     GHLSYLGDCEINSGTNIGCGTITCNYDGVKKHKTIIGKNVFVGSDTQFIAPVKIEDEV
                     IIAAGSTVSVNVEKGALFINRAGHKMIKDYYYKKFQK"
     gene            3710..4864
                     /gene="coaBC"
                     /locus_tag="ACJFD7_000407"
     CDS             3710..4864
                     /gene="coaBC"
                     /locus_tag="ACJFD7_000407"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015941 - pantothenate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HGG0859252.1"
                     /translation="MKTILLAISGSIAFYKSYELISLFKKEGFRVKVLLSNGLLKFAS
                     KMSFEALVDEVLCEENESWQNSNNHIAFSKDVDLVLFAPASVNSINKLAFGIADNLFI
                     QTLIAANKSLIIAPAANTNMFHHFSTQNSLKMLKENKALIIEPICKVLACKDEGVGAL
                     AEVKNIFNIVKRELLKEKFWCDKSVVITGGGTKEKIDDVRCVSNFSSGKMAKAIADAF
                     YFLGARVKLLSSVEFDTPYELCKFESSKDLKELLDKNLNHDFLIMTAAVSDFIPQSVK
                     GKIKKNEHLQGLNLHLSLNEDLLKTCKFQGKKIGFKMEFDSQNALENAKKSLKDKQLD
                     MVCLNIIDQKNYFGSDQNELYFITLNNENKSTLQSKEKLAFELVKWCEKL"
     gene            4861..5478
                     /locus_tag="ACJFD7_000408"
     CDS             4861..5478
                     /locus_tag="ACJFD7_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859253.1"
                     /translation="MSMINSTLPIQMKVLAKSGYGHYTLLLNHKKIQTKSMIELEIGA
                     EYLAELYMQNGGVIQFKHLSKRPNFKPFEEGLALIIAILEDKISYKKFIIQNLLDCKD
                     IERYQILKEMLFASFENIYHIPFNFENKSCLFQMRKRAKYLEIYLYFSVFGALKILID
                     SQGISVFTPFAKVQKFLNEHLDFNVSQENKIEPLFVFKRLFDFKG"
     gene            5482..6150
                     /gene="uppS"
                     /locus_tag="ACJFD7_000409"
     CDS             5482..6150
                     /gene="uppS"
                     /locus_tag="ACJFD7_000409"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl diphosphate synthase"
                     /protein_id="HGG0859254.1"
                     /translation="MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCM
                     EENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRL
                     EDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEKKLELNEENLTQNL
                     DLPLDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRER
                     TFGK"
     gene            6147..6923
                     /locus_tag="ACJFD7_000410"
     CDS             6147..6923
                     /locus_tag="ACJFD7_000410"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A24 family peptidase"
                     /protein_id="HGG0859255.1"
                     /translation="MIFFIIILGACLGSFCTSLASRIIEKKPFFISRSFCFSCDTKLK
                     YYEIIPIFSYIFLKAKCQTCKCHLPISLLINEILGAILLILVYSLSQNFYDFLFLSLF
                     LFNLFLLSLIDIKLKAVPQILLWSAFLFAFFYAFRESEILHFLIFKEFSGGFLLNAFS
                     FGGFVFLLKSLVFFLMNFQKKDEILENLGDADIIIMSCIGGILGFEYGFLVLFIASIL
                     TLPFFIFFRIKAIKEQELAMIPFLNIAFVAVLFYKNLGLF"
     gene            6923..7948
                     /locus_tag="ACJFD7_000411"
     CDS             6923..7948
                     /locus_tag="ACJFD7_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HGG0859256.1"
                     /translation="MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEI
                     SFLDLLKLYGFMLPRILIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKF
                     FLKIASLISAFMLVVALVMIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFI
                     EKQDSDKYENIIMYRPKHKADDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQS
                     IFSGEFDTLVVNTQFNTDNLQTKKFYEYWNDLNENPQRAREFVIYTTIALFPLASTLF
                     ALCFGLVTYRYEKGYVYLGMFGVIAIYFGLLSSFSQPPILACLGIFSLSLFVSAYCFK
                     KMILSRY"
     gene            7945..8670
                     /gene="truA"
                     /locus_tag="ACJFD7_000412"
     CDS             7945..8670
                     /gene="truA"
                     /locus_tag="ACJFD7_000412"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HGG0859257.1"
                     /translation="MMKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHLGIFSPL
                     LMASRTDKGVHASYAVASVECGDYFTNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVR
                     FDVKSREYRYIFSHASYSPFMASYVHFYPKFDLGKANELLGFFVGKKDLKFFCKSGGD
                     NKTTLREIFIARAYAYKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQI
                     EAKKQYNHFLAPPNGLYLSRICY"
     gene            complement(8667..9878)
                     /gene="ilvA"
                     /locus_tag="ACJFD7_000413"
     CDS             complement(8667..9878)
                     /gene="ilvA"
                     /locus_tag="ACJFD7_000413"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004794 - threonine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0006567 - threonine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HGG0859258.1"
                     /translation="MLELNKIYKAKQQISGFVNKTPFIYSSFLSDICQSEIYLKNENL
                     QITGAYKIRGAYNKIANLSAEQKQHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEST
                     PLLKVSATKALGAEVILKGDNFDEAYVFATSYAKENNLSFIHPFEDEFVMAGQGTLML
                     EMLDEISDLDMIIAPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKI
                     KNAKSVRTIADGIAVRDANPINFNIILECVDDFIQVDDEEIANAVLFLLEKHKIIVEG
                     AGAASVATLLHQKINTQNHKKIGVVLSGGNIDAQMLNIIIEKGLFKSYRKMQIHVTLV
                     DKPGALLHLTDSLKIANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKIL
                     TQKAFNFYESF"
     gene            complement(9878..10291)
                     /locus_tag="ACJFD7_000414"
     CDS             complement(9878..10291)
                     /locus_tag="ACJFD7_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HGG0859259.1"
                     /translation="MNEKETISYIINTSKNIAIFALSPDKTKASYRVAEFLQRKNYKI
                     FPIYPKEEFILNEKVYRNLDQIEEKIDTLILFRKGEVALEILPKLVEKNIKNLWLQLG
                     ISNETAKEECKKLDINFIQNRCIMLEYPYFKTKEK"
     gene            10410..10826
                     /locus_tag="ACJFD7_000415"
     CDS             10410..10826
                     /locus_tag="ACJFD7_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002956941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopD"
                     /protein_id="HGG0859260.1"
                     /translation="MEEFYPYTLTIHLLCAILFIGYLFVDVFVLGVVKKKNPNFDKSL
                     FSATGVKIMPFVVLLLFLSGGALAGFHFKPLNLLFAVKIILAFGILSLVVFSLFCHFI
                     LKKKNPLGVFIHPFVFVLCIAIVILAKLMNYFFIPC"
     gene            complement(10813..11886)
                     /gene="trmA"
                     /locus_tag="ACJFD7_000416"
     CDS             complement(10813..11886)
                     /gene="trmA"
                     /locus_tag="ACJFD7_000416"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030697 - tRNA
                     (uracil(54)-C5)-methyltransferase activity, S-adenosyl
                     methionine-dependent [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HGG0859261.1"
                     /translation="MSLENFGNFLTLDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTR
                     AELSFYHENDTLFYAMFDPKNKKKYIIEYLDFADEKICAFMPKLLEYLRQDNKLKEKL
                     FGVEFLTTKQELSVTLLYHKNIEDIKSNLENLSNNLHINLIARSKGKKLIFKTENLRQ
                     TLNIQGRKIFYEFNNDCFIQPNTTINEKMITWVCEILNTQKRMDLLELYCGYGNFTLA
                     LAPFFFKILATEISKSNINFALKNCELNNTINIHFARLSSEELSLAIKKEREFFRLKD
                     IRLDDFNFSHVLVDPPRAGLDKSVIDLIKKYENIIYISCNPITLKENLKELSLTHRAE
                     EFALFDQFVNTPHLECGVFLSKV"
     gene            complement(11883..13616)
                     /locus_tag="ACJFD7_000417"
     CDS             complement(11883..13616)
                     /locus_tag="ACJFD7_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HGG0859262.1"
                     /translation="MNKFLVSLFLPLVAFANSSEAAANANLFGAFTLIPPLVAIALAF
                     ITKDVILSLFTGVLSGTFLLSLSANIFKAQHLTFVNYYNTTVESFSKIISYILGSTSD
                     PVNAGIILQILCIGGLVALITKMGGAKAVALKFAKRAKSAVSAQVNTWFLGLLIFFDD
                     YANLLIVGPIMRPLADKFKISREKFAFIIDSTAAPVAGIAVISTWIGLEVSLIKTAYE
                     HIGISNISAFGIFVETIPYRFYNIFMLFFVVMTAIMGREFGSMYKAEVRARTTGQIAP
                     LPKSGTLDTTELEDQFLAPKEGIKIRAFDAIVPIFTLIILAILGFYFNGLSTLEGEEL
                     AKASVNPLSFETFRAAFGNADSSVVLFQAALFAAIVAIFIGVRRKIFNLKEAVETWIY
                     GWKTMIFTIVLLLFAWSLSSIVKDLGTSLFITSLLADKLPEFILPATIFAFASAISFA
                     IGTSYGTMGILMPLAVPLAHEIAKINGMDANAMHHYMVINISCVLTGAIFGNHCSPIS
                     DNVILSSMSAKCDHMEHVRTQIPYALFICGISLIAGYIPVSLGLSVWFVLPLNFILIA
                     LLLRLIGKKVP"
     gene            complement(13613..14362)
                     /locus_tag="ACJFD7_000418"
     CDS             complement(13613..14362)
                     /locus_tag="ACJFD7_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HGG0859263.1"
                     /translation="MKTAFITGASSGFGRACVEAFIQEGYKVIALARRKERLEELKNA
                     YKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINT
                     MVDTNIKGFLYVAKAVIPILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSL
                     ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMS
                     IINLPSHINVNEIELMPVTQTWNGFYIERDE"
     gene            complement(14359..15597)
                     /locus_tag="ACJFD7_000419"
     CDS             complement(14359..15597)
                     /locus_tag="ACJFD7_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HGG0859264.1"
                     /translation="MKLLFTSFCCFASLMASDAINCDNIKNNKTLLNESSNLDYLNIT
                     SSCKESLKNQDFTKKLYAISNEIRGSNSSCNGVAYLPKLQQFDFLLLKIAIDPIAYQK
                     TLDTPENLEKKYDILKSYFRYWAYQSIGNFRLYKAFWKEYNNAIEPLEKYFESNFNFD
                     KGSNIYYTSNALNEFLNWAVGETKIYKDISPLAKIMSNKNYSVSYIQDFIFSNNPSQD
                     DLTIALQAALLNQREKEILELLIRFGARIDEGYESAIFYALENYENTNFLIQNGANVN
                     QANAFGKTPLFYAIEFNRLDIIKLLLDNGANVNQKYINNNEKLALSANIGSNTPYFIT
                     FCALEHTSKNVLMHAAAYGNVEILKLLISKGANFNAVDDLGFNALDFALAAGKKENAD
                     YLKSLGLKANENLFYGGSLE"
     gene            complement(15657..18203)
                     /gene="acnB"
                     /locus_tag="ACJFD7_000420"
     CDS             complement(15657..18203)
                     /gene="acnB"
                     /locus_tag="ACJFD7_000420"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003994 - aconitate hydratase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HGG0859265.1"
                     /translation="MSFMQEYNKLVEERAALGIPPLPLNANQTRELCKLLENENNEEL
                     ANLLENRVNPGVDDAALVKCEFLDSILKGKISAPNIDKKRALRMLGTMLGGYNVKVLI
                     DALKDENIAKDAAEVLKNIIFVHDNFHTIAELSKNNPHAKEVLQSWANADWFNKKEKL
                     PQVIKCIVFKVAGETNTDDLSPAGDAFTRSDIPLHANAMLKVRQTGSLEKIKELKKSG
                     REVVYVGDVVGTGSSRKSAINSIQWHLGKEIEGVPNKHSGGIVMGSTIAPIFFNTAQD
                     SGALPIICDVTNLEMGDEFEIHPYDGKIIKNGSTIAEFTLSPNTLLDEVRAGGRIPLI
                     IGRGLCAKAREFLGMESENIFTKPEQPKSSSGGYTLAQKMLGRACGVEGVRPGMYIEP
                     MTLTVGSQDTTGPMTRDEIKELASLGFNADFVMQSFCHTAAYPKVSDSNLHKTLPNFM
                     TSRGGVSLKPGDGVIHSWLNRFVLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAVTG
                     SMPLNIPESVLVRFSGELQAGVTLRDLVNAIPYYAIKQGQLTVEKKNKKNIFAGKILE
                     IEGLPNLKVEQAFELSDASAERSAAACSVDLSIESVSEYIKSNISLIEAMIEAGYENK
                     ATLARRAEKMREWLKNPTLLRADKDAKYAYIIDINLNDIKEPILACPNDPDDVATLSE
                     ILADDKRPKNIDEVFVGSCMTNIGHYRALGEILKDKGILKTRLWVVPPTKMDKAQLTN
                     EGYYSIFGAAGARIEVPGCSLCMGNQARVNDGAVVFSTSTRNFDNRMGMGAKVYLGSA
                     ELAAVCAILGKIPSKEEYLQIVSEKLSDEHKANIYRYLNFNEIENFKLEN"
     gene            18258..18710
                     /gene="ogt"
                     /locus_tag="ACJFD7_000421"
     CDS             18258..18710
                     /gene="ogt"
                     /locus_tag="ACJFD7_000421"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HGG0859266.1"
                     /translation="MFKVYYKMPLCYLSLHSDGKFLTRVDFCDNKRSEKNCSLLDLAK
                     YELDLYFTHKLRKFSIPVLIQGTDFESKVYKALMKIPYGKMVTYKDIAQKINHPKAFR
                     AVGNANSKNQIPIFIPCHRVIASNGIGGYNGGLEIKRFLLENEGVNLK"
     gene            complement(18702..19643)
                     /locus_tag="ACJFD7_000422"
     CDS             complement(18702..19643)
                     /locus_tag="ACJFD7_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859267.1"
                     /translation="MQISNLGELLNATLIHEGSVLSVEGFAINLNELKAGFAFFNNDK
                     KEITQAVKKGAYAIITENDITIEDKDIFYFRVENLEQALVRFLRFFCEDKECEFLLFK
                     SYELSLCKAFYFNILKGNIFTDFEKLIKAKKGEIFCYCEENYLNKLCAYSHSLKDANF
                     TLLSRSSFFFTTLICENLYFKNLNLPFFYANSFAKIISFLKEKSQKIIFDFNKIDDFK
                     IYFIDDKFEITPFGSSSQAFIVSNNQNTFEFWKEKFKNIKDFKIASKNSLFCDFSYNQ
                     LSDLRKLKNFKYCLILENYDIFEQEFENKENQTPSLF"
     gene            complement(19647..21533)
                     /gene="metG"
                     /locus_tag="ACJFD7_000423"
     CDS             complement(19647..21533)
                     /gene="metG"
                     /locus_tag="ACJFD7_000423"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HGG0859268.1"
                     /translation="MRYITTPIYYVNDVPHLGHAYTTIIADTLARFYRLQGHETRFLT
                     GTDEHGQKIEEAAKLRNSTPQEYADKISFEFKKLWDEFEITYDIYARTTDTRHIEFVK
                     AMFLKMWQKGDIYKDEYEGHYCISCESFFTQSQLINDCSCPDCGKQTRILKEESYFFK
                     LSKYQDKILQWYEEKDPILPKNKKNELINFVQNGLKDLSITRTSFDWGIKLPQEINDD
                     KHIIYVWLDALFIYVSSLDFQNKGENAKFWPAHVHLVGKDILRFHAIYWPAFLMSVDL
                     PLPKFIGAHGWWTKEGEKMSKSKGNVVKPKEVVDIYGSEAFRYFLLREVPFGNDGDFS
                     ENMLINRINAELSNEFGNLLNRIIGMSTKYSQGNISKEGVLKFHNVELNQAKEHLNLA
                     VEFLENLQCNRYLEELFKALSVANLAISKYEPWNLIKENKHEQANALVALCANILAKT
                     SLLLSPTLPKSCQKVALALNFEISSTNYAKMILDNKLLDFKANPCEALFPKVEKALLK
                     QEIKQEPKKEESPKIKIDDFAKIEIKVAKVLDCQNIEGSEKLLKFQLELDDKEIRQVL
                     SGIAKYYKASDLIGKQVCIISNLKKAKIFGHESDGMILSAKSGDKLVLITPEQLVQNG
                     SLVG"
     gene            complement(21543..21740)
                     /locus_tag="ACJFD7_000424"
     CDS             complement(21543..21740)
                     /locus_tag="ACJFD7_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859269.1"
                     /translation="MNEVRDEFEQDMDKKKEILLSCQNSKNLNSCYNCDEIFNCQARK
                     NYVDAVYNSMSKGKTEGGFDF"
     gene            complement(21733..22575)
                     /gene="fbp"
                     /locus_tag="ACJFD7_000425"
     CDS             complement(21733..22575)
                     /gene="fbp"
                     /locus_tag="ACJFD7_000425"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HGG0859270.1"
                     /translation="MQEVISYIQKAVLEISNALKFPDTSYSQNQNFTGDTQLKFDVLS
                     DEIITKTLSQCSSIKAIISEEKDEILTLNERANFIVAYDPLDGSSLMDVNFAIGSIFA
                     IYEEKASAKNLRAALYSMYGARLELVICKDQPKLYRLNANNEFIFIKDLKMNEKGKIN
                     ATGGTQKFWEEKHAKFIKSLFDEGYRLRYSGAMVSDINQILLKGGGIFSYPATQDAPN
                     GKLRAFFEVFPLAFIIEKAGGKTTNGKNRSLLELEFDKIHATTPCFFGSEYEISKLLK
                     AYNE"
     gene            complement(22577..23068)
                     /gene="mobB"
                     /locus_tag="ACJFD7_000426"
     CDS             complement(22577..23068)
                     /gene="mobB"
                     /locus_tag="ACJFD7_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HGG0859271.1"
                     /translation="MKQLIMAFSGPSNSGKTTLITKIANNFLQQNLKVLIIKHDPADK
                     AQFDFNGKDSFKFFQSGAEVMVLSPTRTTFFSHENRDILKALKLSPDFDICLVEGLKT
                     LDLPRISVFCKEIDESYFIFSNAIASYEKISHPYLTWLDLNDIQAICQYILKNAKNLQ
                     GEL"
     gene            23164..23649
                     /locus_tag="ACJFD7_000427"
     CDS             23164..23649
                     /locus_tag="ACJFD7_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HGG0859272.1"
                     /translation="MKIYSVILGAFLLGACSLKDQAIVDTNLKSQTLMFTQKYKITQD
                     KINAIITMSYLNPILDKTSKDDVLALSFTPNTLKIQNLEVFINNKKANIEKLDDEYLK
                     YIIQNNYTDYFKASLPSVKEETRLVAKICLDHLPCFELNFQKYPKSLYYRSEDVDTQY
                     N"
     gene            complement(23546..25171)
                     /locus_tag="ACJFD7_000428"
     CDS             complement(23546..25171)
                     /locus_tag="ACJFD7_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HGG0859273.1"
                     /translation="MIKKILVFLFIFSSLNATQYSIEKLKKEENSLAKDYYIYRLLEK
                     NKISKKDAQDLNSHIFRYIGKIKSELEKIIPLKPYINPKYAKCYTYTANTILDANLTC
                     QSVRLNSLVFIASLNSKDRTTLAQTFKNQRPDLTNLLLAFNTSDPMSYIVQKEDINGF
                     FKLYNYSKKYDLDLNTSLVNKLPNHIGFKDFAQNIIIKKENPKFRYSMLEINPENISE
                     DSAFYLGVNALTYDKTELAYDFFKKAAQSFKSQSNKDNAIFWMWLIKNNEEDLKTLSQ
                     SSSLNIYSLYAKELTNTPFPKIESLNPSKKKNNFNMQDPFAWQKINKQIRDANASQLD
                     VLAKEFDTQETLPIYAYILERKNNFKKHYFIMPYYDNIKDYNKTRQALILAIARQESR
                     FIPTAISVSYALGMMQFMPFLANHIGEKELKIPNFDQDFMFKPGIAYYFGNYHLNYLE
                     SRLKSPLFVAYAYNGGIGFTNRMLARNDMFKTGKFEPFLSMELVPYQESRIYGKKVLA
                     NYIVYRHLLNDSIKISDIFENLIQNKANDLNKS"
     gene            complement(25168..25449)
                     /locus_tag="ACJFD7_000429"
     CDS             complement(25168..25449)
                     /locus_tag="ACJFD7_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HGG0859274.1"
                     /translation="MVIDSFIISIFQVLQIVINIYTWIIIITALLSWVNPDPYNPIVQ
                     ILYKLSYPAYALVRKIPTRIGNIDLAPLIIVLALQFLGIFLGNILRSIL"
     gene            complement(25452..26747)
                     /gene="gltX"
                     /locus_tag="ACJFD7_000430"
     CDS             complement(25452..26747)
                     /gene="gltX"
                     /locus_tag="ACJFD7_000430"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HGG0859275.1"
                     /translation="MYRFAPSPTGDMHIGNLRAAIFNYICARQKNMDFILRIEDTDKA
                     RNIAGKEEEIKEILNLFSISWQHYYIQSENLKFHRQMALKLVSEKKAFACFCTEEELE
                     AKKELAKKQGKAYRYDGTCEKLADIDVLECEKPFVIRLKKPTHTMKFTDFIKGELSFE
                     PENIDSFVIMRTDKTPTYNFACAVDDMLENVTCIIRGEDHVSNTPKQEHIRASLGYNK
                     AMTYAHLPIILNEEGVKMSKREAHSSVKWLLESGILPSAIANYLVILGNKTPCEIFTL
                     EEAIKWFDISKVSKAPARFDLKKLLQINREHIKMIKDDELNKILDLNKDLAPLAKFYT
                     QEASTIKELKEKMQAIFNAKNFGEFETECKILKELLKDIELFENYEDFKNELLNKSNL
                     KGKKFFMPLRIILTGNIHGPELSDLYPYIKNFIHELARI"
     gene            26833..27957
                     /locus_tag="ACJFD7_000431"
     CDS             26833..27957
                     /locus_tag="ACJFD7_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HGG0859276.1"
                     /translation="MIFLIFSFIVLLIFGLANVYIYKRLIKKITLFKYFYKIFSFIFI
                     VLFLAQAVFLIFRRDEYLSDTWYEILAMFYAPTYCLFFMTLAWDFVKLILALMGKRDK
                     TYNLILRLIFELSLIVLSVFLIYASINNALKTPEVKSVDVEIPNLKKDLKIVMLTDIH
                     LGKNLHENFLDKLITKVNLQSPDIVVIVGDLIDTNPKDLKNYISKLNDFNSTYGTFYA
                     LGNHEYYHGINEVLDLLRKHTNMKILVNQNLDLGFINIAGLGDLAGLDRGLYAPDLAR
                     IKVDLNTSKASILLTHQPKTALLYDLSDFDLVLSGHTHGGQIFPFMFLVKLQQGFVHG
                     LYDLGEKTKLYVSSGAGFWGPSLRVFAPSEIVILNLKGKK"
     gene            27954..28754
                     /gene="psd"
                     /locus_tag="ACJFD7_000432"
     CDS             27954..28754
                     /gene="psd"
                     /locus_tag="ACJFD7_000432"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004609 - phosphatidylserine decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HGG0859277.1"
                     /translation="MSFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNINMSEFKA
                     PCEYESLNALFTRTLQIPRKFEEGFISPSDGKILECGSTFLANEEHFAFSIKGHAYSV
                     EELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGVLYSVNEKHL
                     ERISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFNFDASIQTNAKISHNFTRK
                     YENLNFKKGEELGNFELGSTIVLISQKGLLTFNLKVGQGIKFGEKIAD"
     gene            complement(28751..29032)
                     /locus_tag="ACJFD7_000433"
     CDS             complement(28751..29032)
                     /locus_tag="ACJFD7_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlhB-like flagellar biosynthesis protein"
                     /protein_id="HGG0859278.1"
                     /translation="MSKIKRSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKE
                     HGVPIKEDEDLIEILSKLDLGDEIPPNMYKAVAEVFAFIYQMANKTPKN"
     gene            complement(29029..>29202)
                     /locus_tag="ACJFD7_000434"
     CDS             complement(29029..>29202)
                     /locus_tag="ACJFD7_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859279.1"
                     /translation="NIEFRKTIYENAHELKRNINKAGLLSANFFVGDIIRSKFDTRNM
                     KNLDLEMGMDKKV"
BASE COUNT         9734 a         4212 c         4643 g        10613 t
ORIGIN      
        1 attagtgaat tatcatctga taaaactata ggtattatgc cgaaaaatta tgataagcta
       61 acaataacaa actattataa tacacaagag caatataatg aagcagaaca attaggaatg
      121 tttgggcata ttaatatagg cttacaatca ttaaatttca ctccgcaaag tatgcaaact
      181 caaaatttag ataaagacac tgcaatagat acttttaatc ctgatatgtc agtttatcca
      241 caaaatgaag atggaagcta ctctaaagaa gctttgttta tgagtttttt aaaatcaacg
      301 ggtgtatcgc caagagaagg tagtgcaaca ttaaatccta tagctaagtc ttatgctgaa
      361 gctatgacta aagaaagctt tgatggatca ttaacttcct tagacgacat catgacaggc
      421 aaagtggatt ttgcaagttt gttaaaaggc tatgcacaag agggttggct tgatgcagat
      481 atatatgcaa tggaaaaagg agttgcttgg caaaatacaa gtataggtta tggtggagct
      541 tggtttgata gagaatttaa tcaagtaaaa gctaatggtt ggaaagcaag taaccaaagt
      601 atagactctt atgttaattc tataatggat agacttaata atcttatagg acaaactagg
      661 gtttaggaag tattaatttt ttaagtttga aataaattgc taataacaaa ataagataaa
      721 attagtataa tttttttaca aaaaaatttg aaaggaaatt atgaaaaaaa ttattttgat
      781 ttttatctct ttttttgctt taaatttgag tgcaaaagat ttggttgtag gaatggagct
      841 tggatatccg ccttttgaaa tgagcgataa aacaggcaaa gcaagtggaa ttagcgtgga
      901 ttttttagaa gcttttgcaa agaaaaacgg ctataaactt gtagtaaaaa atatcgcttg
      961 ggatggttta atacctgctt taaaaacagc caagatagat cttattatgt cctctatgac
     1021 aattaccgat gagagaaaga aagtggtgga ttttagcatt ccttatgcta aggcaaattt
     1081 ggctatttta actcctttga actctgatat tacaaatatc aaagatttag ataaaaaggg
     1141 caaagttttg gctttaaagc gtggttctac agggcattta tatgcggtta aaaatttaaa
     1201 aaatgcaact attaatttat ttgataaaga aaatgctgct attttggaag tgattcaagg
     1261 caaggctgat ggattttttt atgatcaact tacgatttat cggacttggc aaaaacatca
     1321 agatacaacc agagccattt tagcgccttt tcaagaaaat cctgagtttt ggggtatagc
     1381 agtacaaaaa ggcaatgcag aacttaaaaa agagcttgat gaatttattg cagaaagcaa
     1441 aaaagatggg ctttttgatt ctttaggaga gaaatatctt aaagatgtta aagatacttt
     1501 taaaaagaat aatttagaat tctttttcta agaaggattt tccttcttag gttacaaagc
     1561 tttccacaag cctttgcact agcaaattcc atccatccac taatacaaaa attaagagtt
     1621 taaaaggtaa agagatcata gtaggaggta gcatcatcat acccatagcc attaaaactg
     1681 agcttacaac catatctatg actaaaaagg gcaggtagat taaaaaccct atttcaaaag
     1741 cggttttaag ctctgaaatc ataaaagcag gaactaaaac cgtaagggga acatcatcta
     1801 tggttttggg attaggtaga ttgcgtatgc gataaaaaag ggctaaatct ttttcgcgag
     1861 tatttttaag cataaaatct ttaaaaggct ttgctccttt tataaaagcc tcttcatagc
     1921 ctattttttc tgctaaataa ggttttatac cttcattata ggattttgta gctacaggtt
     1981 ccatgataaa aaaagttaaa attaaagcca aggttaccaa aatagtgtta ggtggcatac
     2041 tttgcgtccc catagcttgt cgtaaaaatg aaaatactac aataagacgc aagaaagaag
     2101 tcataacaaa aactatactt ggagcgagcg taagtatggt taaaacaatc actatattta
     2161 aagtagtaac aagctgatta ggtgtattgg gtgcacttaa gcttaaattt actgtaggga
     2221 tagttgcttc agcagcaaac aagctcatgc ttaaaagtaa aaataataat atttttttca
     2281 aaatttaaaa accttttttt gttttttatt aaagaaattt aaattttatc ttttgatgac
     2341 taaaaactag tttaagggta ttaggatttt aactttaaac tgctaaaata gtcttttaga
     2401 cttcttgata acaaaggtaa aaaatgaaaa cttctatttt gattttagcg gcaggattag
     2461 gcactagaat aaaatcacaa aagccaaagg ttttgcaaga gctttgtcaa aaaagtatga
     2521 ttttacacat tttaaaaaag gcttttgctt taagtgatga tgtaagtgta gttttatcgc
     2581 atcaaaaaga acgcgttgaa aaagaaattt tagaatattt tccaaaaaca caaattttag
     2641 agcaagattt gcaaaattat ccaggaactg cgggagcttt aagtgggttt aagcctaaaa
     2701 atgaaagagt gttgattctt tgtggtgata tgcctttggt tgagcaaaca agtttggaag
     2761 ctttgttggg taataatgca aaattaaatc tagcagtttt taaagcaaaa gatcctaaaa
     2821 gttatggtag ggtggtgata aaaaacgata gcgttgaaaa aattgttgaa tttaaagatg
     2881 caaatacgca agaaaaagag ataaatactt gcaatgctgg ggtttatgtg attgactcga
     2941 ggcttttaaa agagctttta cctttgattg ataacaataa tgcggcaaaa gagtattatt
     3001 taaccgacat tgtaaaacta gcaaaagaaa aagatgtgat gattaaagca gtttttgtag
     3061 atgaagatga atttatgggg attaatgata aatttgaact cagtatagct gaaaatttca
     3121 tgcaaaaaaa aattaaaaaa tactggatgc aacagggtgt gatttttcat ttaccgcaaa
     3181 gcacttttat aggtgcagat gttgaatttg taggtgaatg tgaagtatat gaaaatgtaa
     3241 ggatagaggg caaaagtaag attataaact ctatcattaa aagttcaagc gtgatagaaa
     3301 attccatcgt agaaaatagc gatgtagggc ctttggcaca tttgcgtcca aattgtgagt
     3361 taaaaaacac tcatatagga aattttgtag aatgcaaaaa tgcaaagtta aataccgtaa
     3421 aagcagggca tttgagctat ttaggagatt gtgagataaa tagtggaacc aatataggct
     3481 gtgggactat cacttgtaat tatgatgggg taaaaaagca taaaaccatc ataggaaaaa
     3541 atgtttttgt aggttctgat acgcaattta tcgcacctgt aaaaatcgaa gatgaagtga
     3601 tcatagcagc aggaagcaca gtaagtgtca atgtagaaaa gggtgctttg tttatcaata
     3661 gagcagggca taaaatgata aaagattatt attataagaa atttcaaaaa tgaaaaccat
     3721 acttttagcc attagcggta gtatagcttt ttataaatct tatgagctta tttccttgtt
     3781 taaaaaagaa ggctttaggg taaaagtttt gctttctaat ggtttgttaa aatttgctag
     3841 caaaatgagt tttgaagcct tggttgatga agttttatgt gaggaaaatg aaagttggca
     3901 aaattcaaac aatcacatag cttttagcaa ggatgtagac cttgttttgt ttgcccctgc
     3961 aagtgttaat tctatcaata aacttgcttt tggtatagcg gataatcttt ttatccaaac
     4021 cttaatcgca gcaaataaat ctcttatcat agctcctgcg gcaaatacaa atatgtttca
     4081 tcattttagc acgcaaaatt ctttaaagat gcttaaagaa aataaagctt tgattataga
     4141 gcctatttgt aaagttttag cttgtaaaga tgaaggcgta ggagccttag ctgaagttaa
     4201 gaatattttt aatatcgtca aaagagaact tttaaaagaa aagttttggt gcgataaaag
     4261 tgtagttatc acaggtggcg gcacaaaaga aaagatcgat gatgtgcgtt gtgtgagtaa
     4321 tttttcaagt ggaaaaatgg caaaggccat agctgatgct ttttattttt taggagctag
     4381 ggtaaaactt ttaagctctg tggaatttga tacgccttat gagctttgca aatttgaaag
     4441 ttctaaggat ctaaaggagc ttttggataa aaatttaaat catgactttt tgattatgac
     4501 ggctgcggtg agtgatttta tccctcaaag tgtaaaagga aaaattaaaa aaaatgagca
     4561 tttacagggt ttaaatttgc atctatcttt aaatgaagat ttgcttaaaa cttgcaaatt
     4621 tcaaggcaaa aagataggtt ttaagatgga atttgattct caaaatgcct tagaaaatgc
     4681 gaaaaaatct ttaaaagata agcaacttga tatggtttgt cttaatatca ttgatcaaaa
     4741 aaattatttt ggaagcgatc aaaatgagct ttattttatc actttaaaca atgaaaataa
     4801 aagcactttg caaagcaaag aaaaattggc atttgaatta gtaaaatggt gtgaaaaatt
     4861 atgagtatga ttaattctac cttacctata caaatgaaag ttttagctaa atcaggttat
     4921 ggacattata cgcttttatt aaatcataaa aagattcaaa ccaaaagcat gatagagctt
     4981 gaaattggtg ctgaatattt agctgaactt tatatgcaaa atggtggagt tatacaattt
     5041 aaacatcttt caaagcgtcc taatttcaaa ccttttgaag agggattggc tttgataatc
     5101 gctattttag aggataaaat ttcttataaa aaattcatta tacaaaatct tttagattgt
     5161 aaagatatag agcgttatca gatattaaaa gaaatgcttt ttgcaagttt tgaaaatatt
     5221 tatcatattc cttttaactt tgaaaataaa tcttgcttgt ttcaaatgcg taaaagagca
     5281 aaatatttag aaatttactt atattttagt gtttttggag ctttaaaaat tttaatagac
     5341 tcgcaaggca ttagtgtttt tacacctttt gccaaggtgc aaaaattttt aaacgaacat
     5401 ttagatttta atgtatcgca agaaaacaag attgaacctt tgtttgtttt caaaaggctt
     5461 tttgatttta aaggatgaaa aatgaatgaa ttaaaacacc ttgctgttgt tatggatggc
     5521 aataggcgct gggctagggc taagggtttt ttggcaaaac ttggatattc ccaaggagtt
     5581 aaaactatgc aaaaattgat ggaagtttgc atggaagaaa atatttcaaa tttaagcctt
     5641 tttgctttta gtacggaaaa ttggaagcgt cctaaagatg aaattgattt tatttttgaa
     5701 cttttagatc gttgtttaga tgaagcttta gaaaaatttg aaaaaaataa tgtgcgttta
     5761 agagctatag gtgatttatc gcgcttggaa gataaagtaa gagaaaaaat taccttagtt
     5821 gaagaaaaaa caaagcattg tgacgcactt tgtgttaatt tggctataag ttatggtgca
     5881 agagatgaga ttataagagc tgctaagcgt gtgattgaaa aaaaacttga gctaaatgaa
     5941 gaaaatttaa cgcaaaattt agatttacct ttagatgtgg atttgatgct tcgcgttgga
     6001 aacgctaaaa gactttcaaa tttcttactt tggcagtgtt catatgctga aatttatttt
     6061 agtgaaactt tatttccatc tcttaccaag agagaattta aaaggattat taaagaattt
     6121 agaaatagag aaagaacttt tggaaaatga tatttttcat aataattcta ggggcttgtt
     6181 tgggttcttt ttgcacaagt ttggcaagta ggataattga aaaaaagccc ttttttatct
     6241 cgcgctcttt ttgtttttct tgtgatacaa aattaaaata ctatgaaatt attcctattt
     6301 tttcttatat ttttttaaag gcaaaatgtc aaacttgtaa atgtcatttg cctatttctt
     6361 tgttaatcaa tgaaatttta ggcgcaattt tgcttatttt ggtttattct ttaagtcaaa
     6421 atttttatga ttttttattt ttatctctat ttttatttaa tcttttctta ctttctttaa
     6481 ttgatattaa actcaaagcc gtaccacaaa ttttactttg gagtgctttt ttatttgctt
     6541 ttttttacgc ctttagggag agtgaaattt tacatttttt gatttttaaa gagtttagtg
     6601 gaggtttttt actaaatgct tttagttttg gaggatttgt ttttttatta aaaagtttgg
     6661 ttttttttct aatgaatttc caaaaaaaag atgaaatttt agaaaatttg ggtgatgctg
     6721 atattattat tatgtcttgt ataggtggaa ttttaggttt tgagtatgga tttttagtat
     6781 tatttatagc ttctattttg actttgcctt tttttatttt ttttagaatt aaagcaataa
     6841 aagagcaaga acttgctatg ataccctttt taaatatcgc ttttgtggca gttttatttt
     6901 ataaaaactt aggattattc taatgaagct tagtttaaga tatgttttaa atcaattttt
     6961 aagtacgaat ttgtctatat ttttcgtact ttttgctatt gtatctatgg tgttttttat
     7021 tcaacttgca aaacttactt caagtataga gattagtttt ttggatcttt taaagcttta
     7081 tgggtttatg ttgcctagaa ttttaatttt taccttgcct atatcttttt ttatttcttt
     7141 aactttggct ttgtttaggc tttctaagga aaatgaaagc atagtgcttt ttactttggg
     7201 attttcacca atgattttgg caaaattttt ccttaaaatt gcaagcttga ttagtgcttt
     7261 tatgcttgtt gtggctttgg taatgatacc tatagtattt gaacttcagg ataactttgt
     7321 aaactataaa agcactcaag tgaaatttaa ctacaaaaca ggagaatttg gacaaaaatt
     7381 tttagactgg atgattttta tagaaaaaca agatagtgat aagtatgaaa acataattat
     7441 gtatcgccct aaacataaag cagatgataa agaacaactt atcatagcca aagaagcgca
     7501 tgtgcaaaga aaagatgata gctttgcttt tagcttaaat caaggcaaaa tgtataattt
     7561 tgagcaaggt caaagtattt ttagtggaga atttgacact ttagtagtaa atactcagtt
     7621 taatacagac aatcttcaaa caaagaaatt ttatgaatac tggaatgatt taaacgaaaa
     7681 tccacaaaga gcaagagaat ttgtgattta tacaactata gccttgtttc cacttgctag
     7741 tacgcttttt gcgctttgtt ttggtttggt tacttatcgt tatgaaaaag gctatgtgta
     7801 tttaggtatg tttggagtga ttgctatata ttttggactt ttaagttctt tttctcaacc
     7861 tccaattttg gcttgtcttg gaattttttc tttaagttta tttgtttcgg cttattgttt
     7921 taagaaaatg attttgagtc gatattgatg aaaataaaaa ttatattttc ttatgatggc
     7981 tctgcttttt taggttctgc tactcagcct cataaaaaag gtgttcaaga tgctttaagt
     8041 ggggccttat cgcatttggg tattttttca cctcttttga tggcttctcg tacagataaa
     8101 ggagtacatg caagctatgc tgtagctagt gtggagtgtg gagattattt tacaaattta
     8161 gaatatcttc aaaaacaact taataaattt tcccatcctt ttatccatat caaaaaaatt
     8221 gaaaaagtaa aagatgattt tgaagtaaga tttgatgtaa aaagtagaga ataccgctat
     8281 atattttctc acgcttctta tagtcctttt atggcttctt atgtacattt ttatcctaaa
     8341 tttgacctag gtaaagctaa tgagcttttg ggtttttttg taggaaaaaa ggatttaaag
     8401 tttttttgca aaagtggagg ggataataaa acgactttaa gagaaatttt tattgctaga
     8461 gcttatgctt ataaagattt tagcattttt cattttaaag ctaatggttt tttaagaggg
     8521 caaattagat taagcgtagc aagcgtttta aaagttttag aaggaaaaat gagtgaaaaa
     8581 gaactcaaag aacagattga ggctaaaaag caatacaatc actttttagc accgccaaat
     8641 gggctttatt taagccgtat atgttattaa aaactttcat agaaattaaa agccttttgg
     8701 gttaaaattt ttcttatttc ttcttgatgt tctttacctt tggtttctag ggtaattgaa
     8761 atcatcgcat cgccataatc aagcttggta gaaaatctat catagtcgat ttttactata
     8821 tttgcattgg ctatttttaa gctgtctgta aggtgtaata atgccccagg tttatctact
     8881 aaagtaacat gaatttgcat ttttctgtaa gatttaaata aacctttttc tatgatgata
     8941 tttagcattt gtgcatcgat attgcctccg cttaaaacta cgccaatttt tttatgattt
     9001 tgtgtattta ttttttgatg aagtagggtg gctacactcg cagctcctgc gccttcaact
     9061 atgattttat gtttttcaag taaaaacaat accgcattag cgatttcttc atcatcaact
     9121 tggataaaat catctacgca ttctaaaata atattaaaat taataggatt tgcatcacgc
     9181 acagcaatac catcggctat agtgcgtacg ctttttgcat ttttgatttt tttggcatga
     9241 aaactttcat acattgcagg agctcctttg gctccaactc cgatgatttt aatgtttgga
     9301 ttgatttgtt tagctgcact tgcgatacca cttataagtc ctccacctcc aacaggtgcg
     9361 ataatcatat caagatcgct tatttcatca agcatttcaa gcatcaaagt tccttgtcct
     9421 gccattacaa attcatcttc aaaaggatgg ataaaactaa gattattttc tttagcataa
     9481 gaggttgcaa agacataagc ttcatcaaaa ttgtcccctt tgagtatcac ctctgctcct
     9541 aaggcttttg tagcagaaac ttttaagagc ggagtggatt ctggcattac aataactgct
     9601 ttaatgccaa atttttttgc actaatggcc acgccttgag catggtttcc tgcacttgcc
     9661 gcaatgactc cgtgttgttt ttgttcagcg ctaagattgg ctattttatt ataagctcca
     9721 cgaattttat aagcacctgt aatttgtaaa ttttcatttt taagataaat ctcactttga
     9781 caaatatcac ttaaaaaaga agagtatatg aaaggagttt tgtttacaaa ccctgaaatt
     9841 tgttgttttg ctttgtaaat tttattaagc tctaacacta tttttccttt gttttaaaat
     9901 acggatattc tagcataatg caacgatttt gtataaaatt tatatctaat tttttacatt
     9961 cttctttggc tgtttcatta ctaataccaa gttgaagcca taggttttta atattttttt
    10021 caacaagctt aggaagaatt tctagtgcca cttcgccttt tctaaaaagt ataagtgtat
    10081 cgattttttc ttctatttga tctaaatttc tataaacttt ttcatttaaa ataaactctt
    10141 ctttaggata aataggaaaa attttataat tttttctttg taaaaattct gctaccctat
    10201 aagaagcttt tgtcttatct ggacttaaag caaatatggc aatattttta cttgtattta
    10261 taatataaga gatagtttct ttttcattca ttgttaacct ttgttttggt attttatctt
    10321 aaatgattaa aaaattaact aaagtgaatt taaaaaatga aaaaagtgtt ataatatagc
    10381 aaattccgaa gtttaataag gagggaaaaa tggaagaatt ttatccatat actttaacaa
    10441 tccatcttct ttgtgctatt ttgtttatag gttatttgtt tgttgatgta tttgttttgg
    10501 gtgtagttaa aaagaaaaat cctaattttg acaaaagtct ttttagcgct actggggtta
    10561 aaataatgcc ttttgtggtt cttttgcttt ttttaagcgg aggtgctttg gcaggttttc
    10621 attttaaacc tttaaattta ctttttgctg taaaaattat tttggctttt ggaattttat
    10681 ctttagttgt tttttcttta ttttgtcatt ttatattaaa gaagaaaaat ccactcggtg
    10741 tttttatcca cccttttgta tttgtgcttt gtatcgcgat agtaatactg gctaaattaa
    10801 tgaattattt ttttatacct tgctaagaaa tactccacat tcaagatgtg gagtattgac
    10861 aaattgatca aacagagcaa actcttccgc tctatgtgtt aggcttaatt cttttaaatt
    10921 ttcttttaaa gtgataggat tgcaagaaat ataaataata ttttcatatt tttttattaa
    10981 gtcaattacg cttttatcaa gtcctgcacg gggtggatca actaaaacat gagagaaatt
    11041 aaaatcatct aatcgaatgt cttttaaacg aaaaaattct ctttcttttt tgatagcaag
    11101 acttaattct tcgcttgaaa gtcttgcaaa gtggatattt attgtattgt taagctcgca
    11161 attttttaaa gcaaaattaa tattgctttt tgaaatttca gtggctaaaa ttttaaaaaa
    11221 gaatggcgct aaagctaaag taaaatttcc atatccacag taaagctcaa gcaaatccat
    11281 tcttttttga gtgtttaaaa tttcacacac ccaagtaatc attttttcat ttatagtagt
    11341 gttaggttga ataaaacaat cgttgttaaa ttcataaaat atttttctac cttgaatatt
    11401 taaagtttgt cttagatttt ctgttttaaa aataagcttt ttgcctttac ttcttgctat
    11461 gaggttgata tgaagattat tgcttaaatt ttctaaattt gactttatat cttctatatt
    11521 tttatgatag agtaaagtta cgctaagttc ttgctttgtg gttaaaaatt ctacaccaaa
    11581 aagtttttct tttagtttat tatcttgacg caagtattct agaagttttg gcataaaagc
    11641 acaaattttt tcatcggcaa aatctaaata ttctataatg tacttttttt tgttttttgg
    11701 atcaaacatc gcataaaaaa gcgtatcgtt ttcatgataa aatgaaagtt cagctcttgt
    11761 acgataatgt ttatcttttg aagcaaaaag tttaaaatcc tttgtataaa attctttaaa
    11821 atattttttt atgaaagaat gtttttcatc taaagtgaga aaatttccaa aattttcaag
    11881 actcatggaa ctttctttcc gatgagtctt agtaaaagtg caataagtat gaaatttaaa
    11941 ggcaagacaa accaaacgct aagtcctaaa gatacaggaa tatatccagc gattaaagaa
    12001 atgccacaga taaataaagc ataaggaatt tgtgttctta catgctccat atgatcgcat
    12061 tttgcactca tagatgaaag gattacatta tctgaaattg gtgagcaatg gtttccaaaa
    12121 atcgcacctg ttaaaacgca gcttatatta ataaccatat aatgatgcat agcatttgca
    12181 tccataccat tgattttggc gatttcatga gctaaaggca cagccaaagg cattaaaatc
    12241 cccatagttc catagcttgt tcctatggca aaagaaatgg ctgaagcaaa agcaaaaata
    12301 gtagcaggca aaataaactc aggcaatttg tctgcaagca aactagtgat aaataaagaa
    12361 gttcctagat cttttactat gcttgaaagt gaccaagcaa ataaaagcaa tactatggta
    12421 aaaatcatgg ttttccagcc atatatccaa gtttctaccg cttctttaag attgaaaatt
    12481 ttacgacgca ccccgataaa aatcgctaca atagcagcaa acaaagcagc ttggaataac
    12541 accacagaag aatcagcatt tccaaaagca gctctaaaag tttcaaaaga caaaggattg
    12601 acacttgctt ttgcaagttc ttcgccttct aaagtgctaa gtccattaaa ataaaatcct
    12661 aatatagcta aaatgattaa agtaaaaata ggaacaatag catcaaaagc acgaatttta
    12721 ataccttctt ttggtgctaa aaattgatct tctaattcag tagtatctag tgtgcctgat
    12781 ttaggtagag gagcaatttg tcctgtggtt cttgcgcgca cttcagcctt gtacatagaa
    12841 ccaaactcac gccccatgat tgcagtcatg actacaaaaa aaagcatgaa gatattataa
    12901 aaacgataag gtatggtttc aacaaaaatt ccaaaagcac taatattgct aatgcctatg
    12961 tgttcataag cggttttaat taaagaaact tctaagccta tccaagtaga aattacagct
    13021 attcctgcta caggagctgc ggtagagtcg ataataaagg caaatttttc acgagaaatt
    13081 ttaaatttat ctgccaaagg acgcataatt ggacctacga ttagtaaatt agcatagtca
    13141 tcaaaaaata ttaaaagccc taaaaaccaa gtgttaactt gagctgatac agctgatttg
    13201 gctcttttgg caaattttaa tgctacagct tttgcacctc ccatttttgt gataagtgcc
    13261 acaagaccac ctatacaaag aatttgtaaa atgattcctg catttactgg atctgaagtt
    13321 gaacctaaga tataagaaat aatttttgaa aaagattcta ctgtagtatt gtaataattt
    13381 acaaaagtta aatgttgtgc tttaaaaata tttgcagaaa ggctaagtag aaaagttcca
    13441 cttaaaactc cagtaaagag cgataaaata acatcttttg tgataaaggc taaagcaata
    13501 gcaactaaag gtggtataag cgtaaaagct ccaaataaat tagcatttgc agctgcttct
    13561 gaggagtttg caaatgcaac taaaggtaaa aacaatgaaa ctaaaaattt attcattcat
    13621 ctctttctat ataaaatcca ttccaagttt gtgttaccgg cataagctcg atttcattaa
    13681 cattaatatg gcttggtagg ttaatgatag acattaccac tttggcaata tcattagcac
    13741 tgataaattg cgtattttca tacactgcat cagctttttg gatatctcct ttaaaacgca
    13801 cttcactaaa ttcagttttg caaagtcctg gagcaatgtt tgttactttg atattgcttc
    13861 ctctaagatc atttcttaag gccaatgaaa attgtcctac aaaggctttg gttccacaat
    13921 acacattgcc tccaaaataa ggattgcgtc ccgcaaccga acctaagtta aaaatataag
    13981 catttttttg tttacgaagt ataggaataa cagcttttgc aacatataaa aatcctttga
    14041 tgtttgtatc taccatagtg ttaatatctt caaggtttaa tttatcaaat tcatctaccc
    14101 ctaaagctaa acctgcatta ttaaaaagca catcaatttc ttgaaattct ttaggtaaat
    14161 tttcaatagc ttcaaagatt tctttttgat ttcttacatc tatgcaaagg gtgtaaatct
    14221 tatctttgta agcatttttt agctcttcta gacgctcttt gcgtctagca agggcgatta
    14281 ctttgtagcc ttcttgtata aaagcttcaa cacaagctct accaaaacct gaactcgctc
    14341 ctgtaataaa tgcggttttc attctaaact acctccgtaa aatagatttt cgtttgcttt
    14401 taaacccaag ctttttagat aatcagcatt ttctttttta cctgctgcta gcgcaaagtc
    14461 aagtgcatta aaaccaagat catcaacagc gttaaaattt gctccttttg aaataagaag
    14521 ttttaaaatt tcaacatttc cataggctgc agcatgcatt aaaacatttt ttgaagtgtg
    14581 ctctagagcg caaaatgtaa taaaataagg cgtatttgaa cctatgttcg cacttaatgc
    14641 taatttttca ttgttattaa tatatttttg attaacattt gctccattat caagaagtag
    14701 ttttatgata tcaagacgat taaactctat ggcataaaaa agtggggttt taccaaaggc
    14761 attggcttga ttaacattcg ctccattttg gattaaaaaa tttgtatttt cataattttc
    14821 caatgcgtaa aaaatagcac tttcataacc ttcgtcaatc ctagcaccaa aacgaatcaa
    14881 aagttctaaa atttcttttt ctctttgatt taaaagcgct gcttgcaagg ctatagtaag
    14941 atcatcttgg cttggattat ttgaaaaaat aaaatcttgt atataagata ctgaataatt
    15001 tttatttgac atgatttttg ctaaaggact aatgtctttg taaatttttg tttcaccaac
    15061 agcccaattt aaaaattcgt ttaaggcatt gctagtatag taaatattac tacctttgtc
    15121 aaaattaaaa ttactttcaa aatacttttc taaaggttct atagcattgt tatattcttt
    15181 ccaaaaagct ttgtaaagtc taaaatttcc tatactttga tatgcccaat atctaaaata
    15241 agattttaaa atatcatatt ttttttctaa attttcgggt gtatctaaag ttttttgata
    15301 agcgatggga tcgatagcta tttttaataa taaaaaatca aattgttgta attttggcaa
    15361 ataagccaca ccattacaag agctattgct tccgcgaatt tcattggaaa ttgcatagag
    15421 tttttttgta aaatcttgat tttttaaaga ttctttacag cttgaagtta tatttaaata
    15481 atctaaattt gaactttcat ttagcaatgt tttattattt ttaatgttgt cgcagttaat
    15541 ggcatcgcta gccattaaac ttgcaaaaca acaaaaggaa gtgaataata acttcaatat
    15601 ttttcctttg aaaattttaa ttttgttatt taatccaaat aagtattaaa tttgaattaa
    15661 ttttcaagtt tgaaattttc aatctcatta aaatttaaat atctatagat atttgcctta
    15721 tgctcatcac ttagtttttc gctgacaatt tgtaagtatt cttccttgct tggaatttta
    15781 cctaaaatcg cacaaactgc cgcaagttct gcactgccta aatatacttt agcacccatt
    15841 cccatacggt tgtcaaaatt tcttgtagaa gttgagaaaa ctacagctcc atcatttact
    15901 ctagcttgat tacccataca caaagaacaa ccaggaactt ctattctagc acctgctgcg
    15961 ccaaagatgc tgtaataacc ttcattagta agttgtgctt tatccatttt tgttggaggc
    16021 actacccaaa gtctggtttt aagtatgcct ttatctttta aaatttctcc taaagctcta
    16081 taatgtccta tatttgtcat acaagagcct acaaaaactt catctatatt ttttggacgc
    16141 ttatcatcgg ctaaaatttc actcaaagtc gccacatcat cagggtcatt tggacaagct
    16201 aggattggct ctttaatgtc attaagatta atatctataa tataagcgta ttttgcatct
    16261 ttatctgctc ttaaaagagt agggttttta agccattctc tcattttttc agcccttcta
    16321 gcaagggtag ctttattctc atatcctgct tctatcatag cttcaattaa agaaatattg
    16381 gatttgatat attcgcttac actttctatg cttaaatcca cactgcaagc agctgcagat
    16441 ctttcagcac ttgcatcact aagttcaaaa gcttgttcga cttttaagtt tggcaagcct
    16501 tctatttcta aaatttttcc tgcaaaaata tttttcttat ttttcttttc aacggtaagt
    16561 tgtccttgtt tgattgcata ataaggtata gcattaacca aatctcttaa ggtaactcca
    16621 gcttgtaatt ccccgctaaa acgcactaaa acactttcag ggatatttaa aggcatagaa
    16681 ccagtaaccg cagcaaaagc cacaagtcca cttcctgcag ggaaagaaat tcctatagga
    16741 aagcgtgtgt gagaatcccc acccgttcct acggtatctg gcaatacaaa acgattaagc
    16801 caagagtgaa taaccccatc acctggtttt aaactcaccc caccacgact tgtcatgaaa
    16861 ttgggcaagg ttttatgtaa atttgaatcg cttacttttg gataagcagc tgtatggcaa
    16921 aagctttgca tcacaaagtc tgcattaaaa cctaggcttg caagttcttt aatttcatct
    16981 ctagtcatag gacctgtagt atcttgagag cctacggtta aagtcatagg ttctatatac
    17041 atacctggac gcacaccttc aactccacag gcacgaccta gcattttttg agctaaggta
    17101 taaccaccgc ttgaagattt aggttgttca ggtttggtaa agatattttc actttccatg
    17161 cctaaaaatt ctctagcctt agcacaaagc ccacgaccta tgataagtgg gattcttcct
    17221 cctgctctaa cttcatctaa gagagtgttt ggactgagtg taaattctgc aattgtagag
    17281 ccatttttta tgatttttcc atcataagga tgaatttcaa actcatcgcc catttctaag
    17341 tttgttacat cacagatgat aggtaaagcc ccgctatctt gagcagtgtt aaagaaaatc
    17401 ggtgctatgg ttgaacccat tactatacca ccgctgtgct tgtttggcac accttctatt
    17461 tcttttccta agtgccattg tatggaattt attgccgatt ttctacttga acctgttcct
    17521 acaacatcac ctacataaac cacttcgcga ccgctttttt taagctcttt gattttttct
    17581 aaggatcctg tttgtcttac ctttagcatg gcatttgcat gtaaaggaat atcgcttctt
    17641 gtaaaagcat ctcctgcagg gcttagatca tcggtatttg tttcccctgc tactttaaaa
    17701 actatacatt taatcacttg tggtagtttt tcttttttat taaaccagtc cgcatttgcc
    17761 cagctttgta aaacttcctt agcgtgtgga ttgtttttgc taagttcagc tatggtatgg
    17821 aaattatcat gtacaaaaat aatatttttc aacacttctg cagcatcttt ggctatgttt
    17881 tcatctttta aggcatcgat taaaacttta acattatatc cgcctagcat agttccaagc
    17941 attcttaagg ctcttttttt gtctatattt ggagcactga ttttgccttt aagtatggaa
    18001 tctaaaaatt cacattttac taaagctgca tcatcaacac caggatttac tctattttct
    18061 aaaagatttg caagctcttc attattttca ttttcaagta atttacaaag ttctctagtt
    18121 tgatttgcat ttaaaggaag gggtggtata cccaaagcgg ctctttcttc aacaagttta
    18181 ttgtattctt gcataaaaga cattttctac tccttaaata ttttttatta taattgtagc
    18241 tctttgaagg ataaaaaatg tttaaagttt attataaaat gcctttatgt tacctatctt
    18301 tacatagtga tggaaaattt ttaactagag ttgatttttg tgataataaa agatcagaaa
    18361 aaaattgtag tttgcttgac ttagcaaaat atgaacttga tttatatttt actcataagc
    18421 ttagaaaatt tagcattcct gttttgatac aaggtacaga ttttgaatca aaggtttata
    18481 aggctttaat gaaaattcct tatggtaaaa tggttaccta taaagatata gcccaaaaaa
    18541 tcaatcatcc taaagctttt agagctgtcg gaaatgcaaa ttctaaaaat caaattccta
    18601 tttttatacc ttgtcataga gttattgcaa gcaatggcat aggaggatat aatggagggc
    18661 ttgaaataaa aagatttttg cttgaaaatg aaggagtgaa tttaaaataa gcttggggtt
    18721 tgattttctt tgttttcaaa ttcttgttca aaaatatcat aattttcaag aattaaacaa
    18781 tatttaaaat tttttaattt tcttaaatct gaaagctgat tataggaaaa atcgcaaaat
    18841 aaagaatttt tagaagcaat tttaaagtct tttatgtttt taaatttttc tttccagaat
    18901 tcaaaggtat tttggttgtt gcttacaata aacgcttgag agcttgaacc aaaaggagtg
    18961 atttcaaatt tatcatcaat aaaataaatt ttaaaatcat caatcttatt aaaatcaaat
    19021 attatttttt gacttttttc ttttaaaaaa gaaataattt ttgcaaaact atttgcgtaa
    19081 aaaaaaggca aattaagatt tttaaaatat aaattttcac aaatcaaagt tgtaaaaaag
    19141 aagctagatc gcgataataa ggtaaaatta gcatctttta gactatgaga ataggcgcaa
    19201 agtttattta agtaattttc ttcacagtag caaaaaattt cacccttttt tgctttgatt
    19261 agtttttcaa aatcagtaaa aatatttcct tttaaaatgt taaaataaaa agccttgcaa
    19321 agacttagtt cgtaagattt aaaaagtaaa aattcacatt ctttatcttc gcaaaaaaag
    19381 cgtaaaaatc ttacaagagc ttgttctaga ttttctactc taaagtaaaa aatgtcttta
    19441 tcttcaatag taatgtcatt ttctgtaatt atagcataag cgcctttttt tacagcttgg
    19501 gtaatttctt ttttatcgtt attaaagaag gcaaagcctg ctttaagttc atttaaattt
    19561 atggcaaaac cttccacgct taaaacgcta ccttcatgaa tgagtgtcgc gtttaaaagt
    19621 tcgcctaaat tgctaatttg catattttaa cccactaaag aaccgttttg tacaagttgt
    19681 tcaggggtga ttaaaacaag tttatctccg ctttttgcag aaagtatcat accatcgctt
    19741 tcatgtccaa aaattttagc ttttttaaga ttgcttataa tgcaaacttg tttaccgatt
    19801 aaatcactgg ctttatagta ttttgctatg cctgagagta cttgacggat ttctttatcg
    19861 tcaagttcga gttgaaattt caaaagtttt tcactccctt ctatattttg acaatcaagc
    19921 actttagcga ctttgatttc aatttttgca aaatcatcga tttttatttt aggactttct
    19981 tcttttttag gttcttgttt aatttcttgt tttaaaagag ctttttctac ttttggaaat
    20041 aaagcttcgc aaggatttgc tttaaaatct aaaagtttat tatcaagtat catttttgca
    20101 taatttgtag atgaaatttc aaaatttaaa gctaaggcca ccttttgaca agactttggt
    20161 agagtagggc ttaataaaag gcttgttttg gctaaaatat ttgcacaaag tgcaactaaa
    20221 gcgttagctt gttcgtgttt gttttctttg attaaattcc aaggttcgta tttactaata
    20281 gctaaatttg ctacacttaa ggctttaaaa agttcttcta aataacgatt acactgtaag
    20341 ttttctaaaa attctaccgc taaatttaag tgttcttttg cttgatttaa ttcaacattg
    20401 tgaaatttta aaacaccttc ttttgaaata tttccttgag aatattttgt actcatacct
    20461 ataatgcgat taagtaaatt tccaaattca ttgctaagct ctgcattgat acgatttatc
    20521 agcatatttt cgctaaaatc cccatcattg ccaaaaggca cttctctaag taaaaaatat
    20581 ctaaaagctt cgcttccata gatatcaacc acttctttag gttttacaac attgccttta
    20641 gatttgctca ttttttcacc ttctttagtc caccagccat gtgcacctat aaattttggc
    20701 aaaggcaaat ccacgctcat taaaaaagct ggccaataaa tggcatgaaa acgcaagata
    20761 tcttttccta ctaaatgcac atgcgcaggc caaaatttag cattttctcc cttgttttga
    20821 aagtcaagtg agcttacata gataaaaagt gcatcaagcc atacataaat aatatgttta
    20881 tcatcattaa tttcttgagg cagtttaatc ccccaatcaa aacttgttct tgtaatggaa
    20941 agatctttaa ggccgttttg gacaaaattt ataagttcgt tttttttgtt ttttggcaag
    21001 atgggatctt tttcttcata ccattgtaaa attttatctt gatattttga aagtttgaaa
    21061 aaatagcttt cttcttttaa aattctagtt tgtttgccac aatctgggca agaacaatcg
    21121 ttaataagct gactttgagt aaaaaagctt tcacaagaaa tacaatagtg tccttcgtat
    21181 tcatctttat aaatatcacc tttttgccac atttttaaaa acatagcttt aacaaattca
    21241 atatgccttg tatcagttgt tcttgcgtaa atatcatagg tgatttcaaa ttcatcccat
    21301 aattttttaa attcaaaact gattttatca gcgtattctt gaggagtgga atttcttagt
    21361 ttggcagctt cttcgatttt ttgtccatgc tcatctgttc ctgttagaaa tcttgtttca
    21421 tgtccttgca aacgataaaa tcttgctaaa gtatcggcta tgatggtagt ataagcatga
    21481 cctaaatgag gtacatcatt tacataataa attggtgttg taatataacg catttttttc
    21541 ctttaaaagt caaatccgcc ttcggtttta cccttagaca tactgttata gactgcatca
    21601 acataatttt ttctagcttg gcagttaaaa atttcatcgc aattataaca agagtttagg
    21661 ttttttgagt tttgacatga aagtaaaatt tctttttttt tatccatatc ttgctcaaat
    21721 tcatctctaa cttcattcat tgtaagcctt taaaagtttt gaaatttcat attctgagcc
    21781 aaaaaaacaa ggagttgtcg catggatttt atcaaattca agttcaagta aagagcggtt
    21841 ttttccattt gtagtttttc cgcctgcttt ttctatgata aaggctagag gaaagacttc
    21901 aaaaaaggca cgaagtttgc cattaggcgc atcttgtgtt gcaggatagc taaaaatgcc
    21961 accccctttt aataaaattt gattgatatc gcttaccatg gctccagaat atcttaagcg
    22021 atagccttca tcaaaaagac ttttgataaa tttagcgtgt ttttcttccc aaaatttttg
    22081 cgttccgcct gtagcattaa tcttgccttt ttcattcatt ttaagatctt ttataaaaat
    22141 aaattcatta tttgcattta agcgataaag ttttggctga tctttgcaaa tcacaagttc
    22201 taatcgcgct ccatacatac tataaagcgc agctcttaaa tttttagcac ttgctttttc
    22261 ttcatagata gcaaaaatag aacctatggc aaaattaaca tccattaagc tagaaccgtc
    22321 taaaggatca taggctacga taaaatttgc cctctcgtta agcgttaaaa tttcatcttt
    22381 ttcttcactg atgatggctt taatacttga acattgactt agggtttttg tgatgatttc
    22441 atcgcttaaa acatcaaatt tgagttgggt atcgcctgta aaattttgat tttgactgta
    22501 gcttgtatcg ggaaatttta aagcgttaga aatttctaaa accgcttttt gtatataaga
    22561 aatcacttct tgcattttat aattctcctt gtaaattttt agcattttta agtatgtatt
    22621 ggcaaatagc ttgtatatcg tttaaatcaa gccaagtaag ataagggtga gaaatttttt
    22681 catagcttgc aatggcgttt gaaaaaataa aataactttc atcaatttct ttacaaaata
    22741 cgctaatgcg tggtaaatca agagttttta atccttcaac caaacaaatg tcaaaatcag
    22801 ggcttaattt taaagctttt aaaatatctc tattttcatg agaaaaaaaa gttgttcttg
    22861 tagggcttaa aaccatgact tcagctccac tttgaaaaaa tttaaaacta tctttaccgt
    22921 taaaatcaaa ttgagcttta tcggcagggt catgtttaat gattaaaact tttaaatttt
    22981 gttgcaaaaa attattagct attttggtaa taagtgtagt tttacctgaa tttgacgggc
    23041 cgctaaaagc catgataagt tgtttcataa aatatactct taattttttt gtaaaattat
    23101 atctttttaa accaaaaaat agggttaaaa ggctacaata atactaaaaa atatggaaaa
    23161 agaatgaaaa tttatagtgt aattttaggt gcttttttgc ttggagcttg ttctttaaaa
    23221 gatcaggcga ttgtggatac aaatttaaaa tctcaaactt taatgtttac tcaaaaatac
    23281 aaaatcacac aagataagat taatgccatt ataactatgt cttatttaaa cccaattcta
    23341 gacaagacaa gtaaagatga tgtattggcc ttgtctttta ctccaaatac attaaaaatt
    23401 caaaatttag aagtttttat caataataaa aaagccaata ttgaaaaatt ggatgatgag
    23461 tatttaaaat atataataca aaacaactat actgattatt ttaaagcatc tcttcctagt
    23521 gtcaaggaag agactaggct tgtagctaag atttgtttag atcatttgcc ttgttttgaa
    23581 ttaaattttc aaaaatatcc gaaatcttta tactatcgtt cagaagatgt cgatacacaa
    23641 tataattagc tagaactttt tttccgtaaa ttcggctttc ttgataagga actagctcca
    23701 tagacaagaa aggttcaaat ttgcctgtct taaacatatc atttcttgca agcatacggt
    23761 tagtaaatcc tataccgcca ttataagcat aagcgacaaa aagtggagat tttaaacgtg
    23821 attcaaggta atttagatga tagtttccaa agtaatatgc tattccaggt ttaaacataa
    23881 aatcttgatc gaaatttgga atttttaatt ctttttcccc tatgtgattg gccaaaaatg
    23941 gcataaattg catcatgcct aaagcataag aaactgaaat agcagttgga ataaaacgac
    24001 tttcttgtct ggcaatagcc aaaattaaag cttgtcttgt tttgttatag tcttttatat
    24061 tgtcataata aggcattata aaataatgtt ttttaaaatt atttttgcgt tctaatatgt
    24121 aagcataaat aggcaaggtt tcttgtgtgt caaattcttt tgccaagaca tctagttgac
    24181 ttgcgttagc atcgcgaatt tgtttgttta ttttttgcca agcaaaagga tcttgcatat
    24241 taaaattatt ttttttcttg cttggattaa ggctttctat ctttggaaaa ggtgtgttag
    24301 taagttcttt tgcgtaaaga ctataaatat ttaaagaaga actttgcgat aaagttttta
    24361 aatcttcttc attgttttta atcaaccaca tccaaaatat agcattgtct ttattacttt
    24421 gcgatttaaa actttgtgcc gcctttttaa aaaagtcata agcaagttct gttttatcat
    24481 aagttaaggc attgactcct aaatagaaag cagaatcttc acttatattt tcaggattta
    24541 tttctagcat agaatatcta aattttggat tttctttttt aataataata ttttgtgcaa
    24601 aatctttaaa accaatgtgg tttggtagtt tattgactaa acttgtattt aaatctaagt
    24661 cgtatttttt agaataatta taaagtttaa aaaaaccatt aatatcttct ttttgtacta
    24721 tatagctcat aggatcagaa gtattaaaag ctagcaataa atttgtcaaa tcaggtcttt
    24781 gatttttaaa ggtttgagct aaagtagttc ggtctttgga atttagactc gctataaaaa
    24841 ctaatgaatt taagcgcaca ctttgacaag ttaaatttgc atctaagata gtatttgctg
    24901 tataggtata gcatttagca tattttgggt tgatataagg ctttaaaggg atgatttttt
    24961 caagttcaga tttaattttt cctatatagc gaaaaatatg agaatttaaa tcctgtgcat
    25021 cttttttact gattttattt ttttctaaaa gcctataaat ataataatcc ttagcaagtg
    25081 aattttcttc ctttttgagt ttttctatac tatattgtgt agcatttaaa cttgaaaaaa
    25141 taaataaaaa aacgagtatt ttttttatca caatatactc cttaagatat tcccaagaaa
    25201 aatgccaaga aactgcaatg ctaaaactat aatcaaaggc gcaagatcaa tattaccaat
    25261 gcgtgttgga atttttctaa ctaaggcgta agcagggtag cttagtttat ataaaatttg
    25321 cactatagga ttataaggat cagggtttac ccagcttaga agtgctgtga tgataataat
    25381 ccaagtataa atgttaatga caatttgtag tacttgaaaa atagaaataa taaaagagtc
    25441 tataaccata gttaaatcct tgctaattcg tgaataaaat ttttaatata aggataaaga
    25501 tcgctaagct caggtccgtg gatatttcct gttaaaatta tccttaaagg catgaaaaat
    25561 tttttacctt ttaagttgct tttgtttaaa agttcatttt taaaatcttc ataattttca
    25621 aaaagttcaa tatcttttaa gagttctttt aaaattttac attctgtttc aaactcgcca
    25681 aaattttttg cgttaaaaat agcttgcatt ttttctttaa gttcttttat agtacttgct
    25741 tcttgagtgt aaaatttagc aagtggtgca agatctttgt ttaaatctaa aattttatta
    25801 agctcatcat cttttatcat tttgatatgt tcgcgattaa tttgtaagag ttttttaaga
    25861 tcaaatcttg ctggagcttt tgaaacttta gaaatatcaa accattttat agcttcttct
    25921 aaggtaaaaa tttcacaagg agttttattg cctagtatga caagataatt cgcgattgcg
    25981 ctaggtaaaa ttccactttc aagtagccat tttacagaag aatgtgcttc tcttttactc
    26041 attttaacac cttcttcgtt taaaatgata ggcaagtgtg cataagtcat ggctttatta
    26101 taacctaagc ttgcgcggat atgttcttgt tttggagtgt ttgaaacatg atcttctccg
    26161 cgtataatac aagtgacatt ttcaagcata tcatcaaccg cacaagcaaa attataagtt
    26221 ggagttttat ccgttctcat aatcacaaaa gagtctatgt tttcaggctc aaaactaagc
    26281 tcgcctttga taaaatcagt aaatttcata gtatgagtag gttttttaag acggataaca
    26341 aagggttttt cacattctaa aacatcaata tcggctagtt tttcacaagt gccatcgtag
    26401 cgataagctt taccttgttt tttagccagc tctttttttg cttcaagttc ttcttcggtg
    26461 caaaaacaag caaaagcttt tttttcgctt acaagtttta aagccatttg gcgatggaat
    26521 tttaaatttt cactttgtat atagtaatgc tgccatgaaa tactaaaaag atttaaaatt
    26581 tctttgattt cttcttcttt tcctgctata tttctagcct tatcagtatc ttcaatacgt
    26641 aagataaaat ccatattttt ttgtcttgca cagatataat taaaaattgc tgcgcgtaaa
    26701 tttcctatgt gcatatcacc tgtgggagaa ggtgcaaaac ggtacatctt atagccttta
    26761 aaattattta aaggcttatt ataacagaaa aatttatacg gatatttaat tttacttggt
    26821 tataatactt ttatgatatt tttaattttt tctttcattg tgttattgat ttttggctta
    26881 gcaaatgttt atatttataa aagattaatc aagaaaatta ctctttttaa gtatttttat
    26941 aaaatttttt cctttatttt tattgtgctt tttttagctc aagctgtgtt tttaatattt
    27001 cgtagagatg aatatttaag tgatacttgg tatgaaattt tagccatgtt ttatgcgccg
    27061 acttattgtt tgttttttat gactttagct tgggattttg ttaaattgat tttagctctt
    27121 atgggtaaaa gagataaaac atataatctt attttgcgtt tgatttttga actttctctt
    27181 atagttttaa gtgtgttttt aatttatgca agtataaata atgctctaaa aacacctgaa
    27241 gtaaagagtg ttgatgttga aataccaaat cttaaaaaag atttaaaaat tgtcatgctt
    27301 actgatatac atttgggtaa aaatttgcat gaaaattttt tagacaagct catcactaaa
    27361 gtgaatttgc aaagtcctga tatagttgta atagtagggg atctgattga tactaatcct
    27421 aaagatttaa aaaattacat ctcaaaactt aatgatttta actccactta cggaactttt
    27481 tatgctttgg gaaatcatga gtattatcat ggtatcaatg aagttttgga tttacttaga
    27541 aaacatacta atatgaaaat tttagtcaat caaaatttag atttaggttt tataaatatt
    27601 gctggacttg gagatttagc cggacttgat aggggtttat atgctcctga tttagcaaga
    27661 ataaaagtgg atttaaatac aagtaaagct agtattttac tcacacatca acctaaaaca
    27721 gctttgcttt atgatttaag tgattttgat cttgttttaa gtgggcatac acatggaggg
    27781 caaattttcc cttttatgtt tttagttaaa cttcagcaag gttttgttca tgggctttat
    27841 gatttaggag aaaaaactaa gctttatgtg agtagtggag caggattttg ggggccaagt
    27901 cttagagttt ttgctccgag tgaaatagtg attttaaatt taaaaggaaa aaaatgagtt
    27961 tttcaaaaga aagttcgaga ctttttggtt ttgtagcggg gattaaattt cctaaaatga
    28021 tacaaaaagt tattaatgaa aattatgtta agtattttaa tatcaatatg agtgaattta
    28081 aagctccttg tgaatatgag agtttaaatg ctctttttac aagaactttg caaattccaa
    28141 gaaaatttga agaaggtttt atcagtccaa gtgatggtaa aattttagag tgtggaagta
    28201 cttttttagc aaatgaagaa cattttgctt tttctataaa aggacatgct tatagcgttg
    28261 aggagctttt aaaagatagc tttgaaaaag atgaacttaa aaatgggctt gattatgtca
    28321 atatttatct ttctccaaaa gattatcatc gttatcacag cccttgtgat atgcaaattt
    28381 taagtgcaac ttacacaagt ggagtgcttt atagcgtaaa tgaaaaacat ttagaacgca
    28441 ttagtaattt atatgtaaaa aatgaaagag tgagcttgaa atgtcaaaat gaaaaaggta
    28501 ttttttggct tgtttttgta ggagcgcaaa atgtaggaaa aatgcgtttt aattttgatg
    28561 caagcataca aaccaatgct aaaatttctc ataattttac tagaaaatat gaaaatttaa
    28621 atttcaaaaa aggcgaagaa ctaggaaatt ttgagctagg ttctactata gttttaatct
    28681 ctcaaaaagg acttttaact tttaatttaa aagtagggca gggtattaaa tttggagaaa
    28741 aaatagcgga ttagttttta ggagttttat ttgccatttg atagataaag gcaaaaactt
    28801 cagctacagc tttatacata ttaggtggaa tttcatcacc taagtcaagc ttgcttaaaa
    28861 tttctattaa atcttcatct tctttaatag gaactccgtg ttccttggct aaagaaataa
    28921 ttttagcagc actttcgcct ttgccacttg caagcacttt tggtgcagag tttttttctt
    28981 tttgatagcc tagagctaca gcttttttaa tcgatctttt gattttgctc atactttttt
    29041 atccataccc atttcaagat ctaaattttt catatttcta gtatcaaatt tacttcttat
    29101 gatatcacct acaaagaaat ttgcacttaa aagtcctgct ttattgatat ttcttttaag
    29161 ctcatgggca ttttcataga tggtttttct aaattcaata tt
//
LOCUS       DBBXPZ010000013        27961 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.013, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000013 DBBXPZ010000000
VERSION     DBBXPZ010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 27961)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27961)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27961
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.013"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..826
                     /locus_tag="ACJFD7_000435"
     CDS             <1..826
                     /locus_tag="ACJFD7_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VgrG protein"
                     /protein_id="HGG0859280.1"
                     /translation="PSLVNLPFNDHQTSLSSKTIGVNEEGYNELTLSNIKDKEQIYLK
                     AQKDYDELVQHNFTQRILNDKDSIVDGIYNERIKKVHTQTIDLAKNVNVGGEYLTNVG
                     LSKDTIVGLSNTLNVGVDNKVRVSKNSSEYVGENKDIEIGANQNTIIHKDEIRNVKGN
                     KKEVVEGHYDINVSDKMQVLSEKEMDYKSKDNILFTSNESIGFESDKNTSMVADNITT
                     YAKTIHELKADSEATIQVGETIINAKPDCVIIKAGGVEVTIDSNGLVVRGGELKAE"
     gene            840..1619
                     /locus_tag="ACJFD7_000436"
     CDS             840..1619
                     /locus_tag="ACJFD7_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859281.1"
                     /translation="MNKPFYKLKRFYIPCGVLVALIIFTSLTYHFLQRPLELIFWDRY
                     YYEKEYQNAKDMYKLFKSNEEEFKKVFKEQNLNEELKTNQKELLNYMHHFKRDSNFMQ
                     ILGLDNAYLKALRDKTSIFGRKSENNLNYFYLASNSTTNLDEMNNFISIIDKYIIFIN
                     KIDTLPDTYTLMKIAFNADYFLFNLVPFASSLDKNFICSIPQKEQLLENMINSYEKMD
                     LLYKTKLKTEIQEMIYPAIYATKKLNHFIDIAKGRLNACGK"
     gene            1603..1776
                     /locus_tag="ACJFD7_000437"
     CDS             1603..1776
                     /locus_tag="ACJFD7_000437"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859282.1"
                     /translation="MHVENNLSPEDRQGIENYLIILNTISFLGDLNIKYNNHNAKIKN
                     YSSGYCKYYCKIA"
     gene            1792..2652
                     /locus_tag="ACJFD7_000438"
     CDS             1792..2652
                     /locus_tag="ACJFD7_000438"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859283.1"
                     /translation="MKKLFYRLNFLFNTKLKKLTWIVAILFIGYKLLFYTEIKNGYVK
                     VTLRPIVTLNQVGYCIKEGRRLSQNELFERATKDWLEKLYNQAHDPLVMNADGDWLDI
                     TNCYYSSKEKAKKGLNCQFYSNGKQFGIDDIAKQIDLNKSQEENMQKIMQGFSIVRPF
                     EEEKILTDDLELKYSLLLQDRLGDFTFMPYDIRFIVVGGDTGYYSKFGYSVFALMIQK
                     YFIGNDHDFKFKKGTVEYWKNKDNKNNHEYIYYPITNCGEVEMRYDFDPPGLYYQLFH
                     DMQWRDEWHR"
     gene            2640..4592
                     /locus_tag="ACJFD7_000439"
     CDS             2640..4592
                     /locus_tag="ACJFD7_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859284.1"
                     /translation="MASLNLKGDYGVEILSYYLWGQSTPPSDLARKDNRVLIGKDYQA
                     RDEKEIIIQASALDYMKYVDRYTNATNFGIFQNFFKSVFSEKELGEFKDKIENETYIL
                     ELDDIIKTKVYGGVNPFLDEDNKNKDKSTKDKENNEENKYEKYDENKMAVRIIHYYLD
                     TNSGNYAKRAFAFGSTSIAFNKDVKFHISAKTYEPVCISNLKLYPLKDNFDFESDSSL
                     AEFVNFFLEKELDPLKIGRTVNIHFIDQEKITPMVIYKRVFQILQNQSFNSLTPSITS
                     LREYYKTRILPSGVLYLQDDNTNSQTNLEQTILYNNTSFNKISKEPLNESSSSAKEPC
                     FITLYLKDEHNKPIANAKIIIKGFKHDEALRVVNLKRRSDEKGKIRFDKEKYFSDCYS
                     FKVKLDESEAYFPTPLQNAKRIFNNYTHHKVGLILKFKAKDHLVYDGFNLYHYKGNEL
                     INSYMARSGTAKADNEKRSKKQIANYFYQDEKDTSKGKKAYFYYDDESIKDRFGTLPE
                     GEYYLKINEIAKDTNPSFLKDYPFEIGKTWGKCCVRLYTNKECSKTFKEVKIKESNEK
                     ENKTSKKDKKEQSIIKDNLYLYSINEKGEFGSSGSIGMAQAQLLEDLNKQAKFVRSEG
                     ENIISLKVAYPEKIDNKIIFVGKVYE"
     gene            4585..5859
                     /locus_tag="ACJFD7_000440"
     CDS             4585..5859
                     /locus_tag="ACJFD7_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859285.1"
                     /translation="MNKTLIFHENSHIDLNASFAPGTYISLQLEKESDEKLKWAFVEC
                     ESKEKLNLLLHDCNGYIDEKNLKVLFENDDLIYNESYEDNILSFCLPINRSNEPKEDI
                     QDYKYYIVLFAYSSEKTMPNLEDHYIIIDMSFRVGVGDDEDVEESKLRNDFNSDIIQT
                     NCIFSVFEAVEFLKACQSFKEKAKETNNYEFFKNYPQLAGKIAYIYYRFDLANEKFIK
                     SVSDGDKYLKEREKFVKKFIDVYSDEKFFIIPSYKAKFSEFSNKSDEEKIMFFQEFLE
                     DLVKAFDIEPPIPTIYKEFKQYNNGSYNSVGKKALYLNLKNKEEQILSTFFHEFRHFY
                     IDKNNSKEIKNQHTESIFKLIYSNGYFKFENVVMFWAYDKKCIISNNYTDCVGVKPYK
                     YSIFSDKPAIYWFSPSERDARISTFYFEKYRG"
     gene            5840..7108
                     /locus_tag="ACJFD7_000441"
     CDS             5840..7108
                     /locus_tag="ACJFD7_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859286.1"
                     /translation="MKNIEVDMLEVAIKNIFKHKDFLQTRKEPYAIYLAINTNIKSYN
                     NICPSEKYFWKFNDMNELECYNPKFGIYLGKIVFDKKGNKLIPKYIPAKFENLEEEVK
                     KIKNPLWLANKNPNYIKPKFYDGMGGGYYFESPNNLEYQCKIEKDTQILSQEQIISYV
                     KELYSKNTMIIKNYIDAINKNHGIKPFVFNDEIYDQLGEVGILTKEQANNFKDKSYIK
                     KNPILLAMLDYLAKQNKKDEDYLITFDDEYFYADLVWSLKDFLLELSYGLFQDETKLL
                     FNPAAYMDDTKIDYKNLNEEINKRYEKILLDMGFEGENGYFNDYYDYGFGNNGIFKFN
                     IYDYFAYDEIGVRPYVSPRSPFYSPNFVYSDGNYHGDAKLIPSALGKYYFELSYQKGV
                     YIELLRPYYPSIKDLPEGWDNKMLEKANLK"
     gene            7121..7339
                     /locus_tag="ACJFD7_000442"
     CDS             7121..7339
                     /locus_tag="ACJFD7_000442"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859287.1"
                     /translation="MNKPFYKLKRFYIPCGVLVALIIFTSLTYHFLQRPLELIFWDRY
                     DISKLSINNEEKNFKTMKTVITPTFANT"
     gene            complement(8178..8627)
                     /locus_tag="ACJFD7_000443"
     CDS             complement(8178..8627)
                     /locus_tag="ACJFD7_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859288.1"
                     /translation="MVIFCAALALLLFLGVIAYLITSDGKKTIKKQKTSQKQHVAEKT
                     KKFDTDLDKMIIAASDVKLTDIELKELAKLYVQTHKLGSKTSKELDEAAKKKLEFVSA
                     LAANINASAQTVSYLNKELKKISGSYKKEIDAYEHMGLAKRKIKEDK"
     gene            complement(8643..11888)
                     /gene="ccsA"
                     /locus_tag="ACJFD7_000444"
     CDS             complement(8643..11888)
                     /gene="ccsA"
                     /locus_tag="ACJFD7_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HGG0859289.1"
                     /translation="MKNIIKSIGDLRVSVVLFLLFALFCALATFIESAYGTPTAWAMV
                     YDTFWFEYIQLLLGINLLCGMFRYKMFGLKKLPLMIFHISFLFILVGSAMTRYAGFEG
                     ILPIREHTQNSLIESSKTSLRISAIKDGERYSAVNDRYIGNLPFANSFKLKLNLGDDQ
                     AVLKYKDLILNAHYTYKENNNSDPLLVLMLSQKGSQGVDVKFEKGEVKNIEGVNFAFM
                     NDNVKAPFVKIDENLTLSSSENLHFLSMLDGQNLDLKIGEKANAKERRLYEINDISFV
                     VKAASLHAQEALEGSNRPQDESFWLWFKSAWLEVGRTMLISTFGEPQNWKNSLLLHFK
                     DFALSNENKNLELTGSNALKLELSYKNESKEFYIFEYNKPIMIELADQKFFISWALSY
                     EQLPFDIYLRDFVLDRYPGSMSPASYASEITVKNNNENFDYRIFMNNVLDYDGYRFYQ
                     SSYDQDEKGTVLSVNKDPGKIPTYIGYFLLCLGMFMNFLNPHSRFRTLARLINKDTLK
                     HTSVIIFILLLSFGSEKTFAQDLNSTLPVVNTNHAKALATLIVQKSADGRMVPFDTLS
                     REILEKIHQSDSYKGQNSNAVMLSMLVDVDKWQMEPFILMPQNQAVRDAIANILEIPS
                     AKYISYKDFFDENNRYKLQKYIENANRKNPNARGVFDKEIIKLDERANIVNLVFSGEL
                     FKFIPVQNNPNNVWLAPFSAVTTLKGDEGHIVLALIQNYFSAVENAFKDGNWTRADEG
                     LKFIKEYQEKIGYKVMPSKTKVEMEIFSNKAEIFVKLAPVYLIAGFLLLILVFSKMIV
                     PNLKISFIFKVVYVLNVLAFAIHTVGLGLRAYLSGHAPWSNGYESMVYIAWALSLSGI
                     FFSRKSPIALSLTSILSGVVLMVAHLSEMNPQITNLVPVLNSYWLSIHVSVITASYGF
                     LGLCALLGIFTLFLMCFLKKDGKYNLNILRNITEATRINEMAMIFGLCLLTVGNFLGA
                     IWANESWGRYWSWDSKETWALVSILVYAAILHLRMIPKYCNQFVFALWSMFAYWVIIM
                     TYFGVNYFLIGLHSYAAGEAAQIPNYVYWGFALMVVLAFFARRKRNFVGKL"
     gene            complement(11906..12601)
                     /gene="livF"
                     /locus_tag="ACJFD7_000445"
     CDS             complement(11906..12601)
                     /gene="livF"
                     /locus_tag="ACJFD7_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0859290.1"
                     /translation="MLIVKDLHVYYGLIEAVKGIDFKVETGHIVSLIGSNGAGKTSTL
                     NALLNSVKRTGEVNFLGYDTKRHLTHTLVQKGIALVPEGRRVFINLSVEENLKIGAFN
                     NAENYEHLREQMYKLFPRLASKKHALAGTLSGGEAQMLAISRALMSEPKLLMLDEPSL
                     GLAPKIVGEVFDIIVRLKEEGITILLVEQNAYSALKISDYAYVLENGRIVMENEAKNL
                     IGDDEIRKKYLGL"
     gene            complement(12588..13358)
                     /gene="livG"
                     /locus_tag="ACJFD7_000446"
     CDS             complement(12588..13358)
                     /gene="livG"
                     /locus_tag="ACJFD7_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0859291.1"
                     /translation="MILELKQISKSFGSVKAINETSFKINEGEIFALIGPNGAGKTTL
                     FNIITGNYKPSSGSVEFLGERIDHLKPHKIVHLGIARTFQNIRLFSSMNVLENVLIGF
                     NKQMKYNIFEAFLHLGRFGKIEQVFKEKAYAILEELGIAEFAYEKATSLSYGQQRKVE
                     IARAMATQPRLLLLDEPAAGMNSSESDELAELIFKLRKDYKISVLLIEHDMKFVNKLC
                     DRVLVLDYGKTIFEGKLCDAVNHKEVIAAYLGDFDANS"
     gene            complement(13355..14407)
                     /gene="livM"
                     /locus_tag="ACJFD7_000447"
     CDS             complement(13355..14407)
                     /gene="livM"
                     /locus_tag="ACJFD7_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HGG0859292.1"
                     /translation="MMVRIKVSHLIFLIASIIFIFISPYIFGDYGLNIVNQIAIFIIL
                     AVSYNLINGVTGQFSLEPNGFVAIGAYVAALVLLSADAKNDQFFLDGPSSFILAIHSN
                     SFILALIMAGICSSLLALILAFAVFRVRGDYLAIVTLGFGIIIKIAAINFPSITNGSR
                     GLVDIPQFSTIYWTGGIAIVAVILILNIVYSKYGRAMKAIRDDEDAASAMGINTFWIK
                     TLAFSTSAFLEGVGGGLLACLLTTVSPTQFDFLLTFQLLIIIVLGGLGSTTGAIIGAI
                     LVIGGSEWLRFLDELNIKIDSLNLDIQSTPGLRMVVFSIVLILVMLFARKGIMGYYEL
                     SDVIRGIKKRFKRSKK"
     gene            complement(14407..15303)
                     /gene="livH"
                     /locus_tag="ACJFD7_000448"
     CDS             complement(14407..15303)
                     /gene="livH"
                     /locus_tag="ACJFD7_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HGG0859293.1"
                     /translation="MDSTLFLQQLVNGLSLGSMYALIAVGYTMIYGVLRLINFAHGDI
                     MMVGAYAALFCMTNLNVPFLGALSLAMIFAACVGIATDRIAYKPLRQAPRISLLITAI
                     GISFFLQNLFNMLFTSTPRTFTPPSYFEESVNFGGVITTYGSLMVPALTFVILIAVLW
                     ILYKSKYGIAIRALAFDIQTVNLMGIDANRIIAIVFALGSALAAVGGVFWAANYYSVE
                     PTMGTLIGLKAFAAAVLGGIGSVVGAVLGGLIIGFTEVVVVAFFPDLSGFKDAFAFIF
                     LVFILLFRPTGILGINFEKSRF"
     gene            complement(15322..16431)
                     /gene="livK"
                     /locus_tag="ACJFD7_000449"
     CDS             complement(15322..16431)
                     /gene="livK"
                     /locus_tag="ACJFD7_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HGG0859294.1"
                     /translation="MKKSLILASILSLSLSAAEVKIGVVLPLSGATAAYGQSALEGIK
                     LANSMQSALSNGDKVSLAIIDTKGDKLESSSGANRLVSQDKVIGLIGEMVTANTLQVM
                     RVAEDNKIPLIAPAATGDRLLDKKIYSSRVCFMDSFQGSSLAKYVFSKLNYKSAVIVV
                     DQSTDYSLGLAKAFEKQYKSNGGQILRILRVNSGDKDFRAIVAQVKSLNPEFIFLPLY
                     YSEASLFARQSKLAGLNIPMGSADGVADQTFISLAGDASEGYIFTDSFDANNPTTKLS
                     KEFISVYEKAKGTKEVPNFSAMGADAYFVMLNAMNACVENLTSKCVNEKIHQTKNYQG
                     VSGVISIDQTGNATRSVVVKEIKNQKQNYKDIINP"
     gene            complement(16453..17568)
                     /gene="livJ"
                     /locus_tag="ACJFD7_000450"
     CDS             complement(16453..17568)
                     /gene="livJ"
                     /locus_tag="ACJFD7_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HGG0859295.1"
                     /translation="MKKLTLTLSVLTMVNCLYAKDINIGVVLPLTGTVAAYGQDVFNG
                     IELANKLQPKLSNGDVIKLITIDTKGDKLETSNGVNRLIATDKVLGIIGEATTPNTIQ
                     AISIAEEKKIPLIAPVASGDKLLDKKKYASRVCFKDSFQGDKFATYVSKDLGLKNAVI
                     IIDQSNVYSLGLARAFENSFKNNGGKIIKKLVINSGDKDFRAVVSQLKSLNPDFVYMP
                     IYHPEAALIARQARQIGFDKLLAAGDGVNNQTFIDLGGSAVNGVIFTDSFDYNSPSTQ
                     LGKDFVAAYEKVKGTKELPAFSAMGADAYFVMLNAMNACVDNLSSECINSKIHQTKDF
                     QAVGGVISIDESGNAIRSVVIKEIQNQKQNYKTIINP"
     gene            complement(17599..18033)
                     /locus_tag="ACJFD7_000451"
     CDS             complement(17599..18033)
                     /locus_tag="ACJFD7_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HGG0859296.1"
                     /translation="MIARWLFISSIFVVALFGINLKSFFTYTFDANKQYDMEKAKALY
                     FQNKCNTCHGDNAEKSVIGSRILKDMSPEDIKGALIGYTLDSSSSTTASQMAFYARNL
                     SHEDIDNIIAYIKGGNFALDLQVKDLLEEEPAQKTKHNIFLK"
     gene            complement(18042..18233)
                     /locus_tag="ACJFD7_000452"
     CDS             complement(18042..18233)
                     /locus_tag="ACJFD7_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mini-MOMP protein"
                     /protein_id="HGG0859297.1"
                     /translation="MKKIFLIGMILNHFVFAAPLDEVFKDIEVSGTVRYRYDIKKEKK
                     YNKKTHRYQNKTQTEITIK"
     gene            complement(18286..18792)
                     /locus_tag="ACJFD7_000453"
     CDS             complement(18286..18792)
                     /locus_tag="ACJFD7_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqhA family protein"
                     /protein_id="HGG0859298.1"
                     /translation="MLEKIFESLLVRSRIVTILPVIFGLIGAFVLFFIASYDVLKVIF
                     YTYNYFFDAGSNVDLHEDVVALIIGAVDLYLMALVLFIFSFGVYELFISEIEEFKQTK
                     QSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALCVGL
                     YFLHKGGH"
     gene            complement(18801..19832)
                     /gene="asd"
                     /locus_tag="ACJFD7_000454"
     CDS             complement(18801..19832)
                     /gene="asd"
                     /locus_tag="ACJFD7_000454"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HGG0859299.1"
                     /translation="MSKKQKIAIVGATGAVGEELLNVLDELDFPVESILPLASAKSVG
                     SEVEFKGKAYKVKELTENVFKENPIDIAFFSAGASVSEKYAKFAVESGAVVIDNTSHF
                     RMEKDVPLVVPECNPEDIKDWKKTGIIANPNCSTIQMVQVLKPLNDAFNLKRVDVSTY
                     QAASGAGKEGMQELVEAMQSFFAFKLDEFEPQTFPYTLALNLIPQIDVFMDNDYTKEE
                     LKMVNETQKILHKNLEVSATCVRVPVLRSHSEAITMHFEKEIDVKKAKEILKKAPSVI
                     VIDDPKNKKYPMPLMTSDTNETYVGRIRADVYDKKILHLWCVADQIRVGAATNAVRIA
                     QKWLELKNK"
     gene            complement(19832..21133)
                     /gene="flgR"
                     /locus_tag="ACJFD7_000455"
     CDS             complement(19832..21133)
                     /gene="flgR"
                     /locus_tag="ACJFD7_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system response
                     regulator"
                     /protein_id="HGG0859300.1"
                     /translation="MNLVIVEDDINMRKSLEIALAEYEEFNIKSYKSATEALKKIDEN
                     TDLIITDINMPGIDGIEFVKACENKYDFIIMTGNATLSRAIEAVRLGVKDFLTKPFDV
                     DTLVEAIKRAKIIREKTADKKSKKNEKKEENKDFFSTSPNLEKTLNLSQKAAKTDASV
                     MFFGESGVGKEVFSRYIHTHSKRSNKPFIAINMAAIPANLIESELFGFEKGAFTDANA
                     TKIGLFEMANEGTLFLDEIGEMPYEIQAKLLRALQEKEITRLGSTKSIKIDVRIISAT
                     NANLDEKIKNGEFRSDLYYRLNTVPINIPPLRERKEEILGIAQKVLEDTCKEYDFKEK
                     QLSQEAKNALLEYDFPGNIRELISVVQRACILSENDEISSEDLFLEARSIKKDVKNLE
                     KELICEVLLSVDYDKDQASQILGMDIKILNEKIKKYQIKDK"
     gene            complement(21190..21639)
                     /gene="flgQ"
                     /locus_tag="ACJFD7_000456"
     CDS             complement(21190..21639)
                     /gene="flgQ"
                     /locus_tag="ACJFD7_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FlgQ"
                     /protein_id="HGG0859301.1"
                     /translation="MERIVCLLIFLSFKLFAQDEFIFWAELSSKNFILFHQNQNLSLA
                     MTQSENVEEQWVCEISYSDQDLKVLPRTSLGLIDDNMPKTIKFNFLNSHKDELSDCFI
                     GARISVKDIVNTGLLRAQSETYVKILPLRFTVEFGEQNAIIYYLKKK"
     gene            complement(21615..22130)
                     /gene="flgP"
                     /locus_tag="ACJFD7_000457"
     CDS             complement(21615..22130)
                     /gene="flgP"
                     /locus_tag="ACJFD7_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly lipoprotein FlgP"
                     /protein_id="HGG0859302.1"
                     /translation="MKKIYFMLAIAGIFAGCVSSANSATKNSSANSTAPSQDVIVQKV
                     DKDDVRDIIREEKMLAPDASETELSFTAVGEGIAPMNTVSTAQALALAKRAAITDAYR
                     QLASKLYGVKVNGKDTVKDAMLRSSTITAQVNGLIKNASIIDQNFNQGLYRVNLELKI
                     DADKWKELFAY"
     gene            complement(22199..24787)
                     /gene="gyrA"
                     /locus_tag="ACJFD7_000458"
     CDS             complement(22199..24787)
                     /gene="gyrA"
                     /locus_tag="ACJFD7_000458"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002811340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009330 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) complex [Evidence
                     IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HGG0859303.1"
                     /translation="MENIFSKDSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGL
                     KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMR
                     YPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPD
                     VLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDASLEEIMQFIKGP
                     DFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKKTNKDVIVIDELPYQTNKARLIE
                     QIAELVKEKQIEGISEVRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVI
                     MLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNID
                     EVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENELVELMK
                     EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVV
                     TITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQL
                     YWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKR
                     TNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE
                     NLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAV
                     VIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVVIVDETM
                     DLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVENDEVVSIAKCPKEENDEDELSDE
                     NFGLDL"
     gene            complement(24828..25403)
                     /locus_tag="ACJFD7_000459"
     CDS             complement(24828..25403)
                     /locus_tag="ACJFD7_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HGG0859304.1"
                     /translation="MRCINCGAFTLLCFCELCELELSEFSLNVRKLDNNFKVYSFYKY
                     HEIQHLLHSKHYFYGYFVYKMLAKLSFAKFKDFFDPRMTINVIALDDKVEDMLYSHSA
                     ILARYLKTKFVKPVFNVLKAQNHIKYSGKSLEFRQKHKRNYKLLKTIHEPVILVDDIV
                     TTGSSLLEAKKVLEENKISVLFALVLADAKV"
     gene            complement(25400..26044)
                     /gene="mapA"
                     /locus_tag="ACJFD7_000460"
     CDS             complement(25400..26044)
                     /gene="mapA"
                     /locus_tag="ACJFD7_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein MapA"
                     /protein_id="HGG0859305.1"
                     /translation="MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPG
                     GFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLF
                     VDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKL
                     VGVLQVSDINKNKKFTIRTKQDVQGFDDLKETTFYTHLLIKQMANKAASLISEL"
     gene            complement(26121..27917)
                     /gene="lepA"
                     /locus_tag="ACJFD7_000461"
     CDS             complement(26121..27917)
                     /gene="lepA"
                     /locus_tag="ACJFD7_000461"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HGG0859306.1"
                     /translation="MSVKNIRNFSIIAHIDHGKSTLADRIISECGAISDRQMSSQVMD
                     TMDIEKERGITIKAQSVRLNYKFNNENFVLNLIDTPGHVDFSYEVSRSLASCEGALLV
                     VDASQGVEAQTIANVYIALENNLEIIPVINKIDLPNADVEKVKHEIEHIIGIDCKDVI
                     CVSAKTGVGIKELIETIITKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGSI
                     AKNDEVLVMSTDKKHIVQDLFYPHPLSPIKTQSLQSGEAGVVVLGLKTVGDVQVGDTI
                     TLVKNKAKEAIGGFEKAKAFVFAGLYPIETDKFEDLRDALDKLKLNDSSITYEPETSL
                     ALGFGFRVGFLGLLHMEVIKERLEREFNLDLIATAPTVTYEIYQTDGELIKIQNPSEL
                     PPVNKIDHIKEPYVKATIITPSEFLGNLITLLNRKRGVQVKMDYITPERVLLEYDVPL
                     NEIVMDFYDKLKSLTKGYASFDYEPIEFRVGDLVKLDIKVAGENVDALSIIVPNEKAQ
                     SKGRELVSAMKEIVPRQLFEVAIQASIGNKIIARETVKSMGKNVTAKCYGGDITRKRK
                     LLEKQKEGKKRMKAIGKVNLPQEAFLSVLKID"
BASE COUNT        10105 a         4744 c         3623 g         9489 t
ORIGIN      
        1 tccaagttta gtaaatcttc cttttaatga tcaccaaact tctctttctt ctaaaaccat
       61 aggtgttaat gaagaaggtt ataatgaact taccctctca aatataaaag ataaagaaca
      121 aatttattta aaagcccaaa aggattatga tgaattagta caacataatt tcactcaaag
      181 aatcttaaat gataaagatt ctatagtgga tggaatttat aatgaaagga ttaaaaaggt
      241 tcatactcaa accatagact tagctaaaaa tgtcaatgta ggaggagaat acttaactaa
      301 tgtaggctta tctaaagata ccatagtagg attaagcaat accttaaatg taggagtaga
      361 taataaagta agagtatcca agaattctag cgaatatgta ggagaaaaca aagacataga
      421 aataggtgct aatcaaaata ctattatcca taaggatgag ataaggaatg tgaagggaaa
      481 taaaaaggaa gtggttgagg ggcattatga tattaatgtc agtgataaaa tgcaagtgtt
      541 aagcgagaaa gagatggatt ataaaagcaa agataatatt ctttttacaa gcaatgaatc
      601 cataggattt gaaagtgata aaaatacaag catggtagct gataatatca caacttatgc
      661 aaaaactatt catgagttaa aagccgatag cgaggcgact atacaggtag gagaaacaat
      721 tattaatgca aaacctgatt gtgttatcat taaagcaggt ggagttgaag taactataga
      781 ctctaatgga cttgtggtta gaggtggaga acttaaagca gagtaataaa ggataaacaa
      841 tgaataaacc cttctacaaa cttaaaagat tttatatacc ttgtggtgtg cttgtagctt
      901 tgattatttt tacaagctta acttatcatt ttttacaacg acctttagag cttatctttt
      961 gggatagata ttattatgaa aaagaatatc aaaatgctaa agatatgtat aaactattta
     1021 aaagtaatga agaagaattt aaaaaagttt ttaaagagca aaacttaaat gaagaattaa
     1081 aaacaaatca aaaagaattg ttaaattata tgcatcattt caaaagagat tctaatttta
     1141 tgcaaatttt aggtttggat aatgcttatc ttaaagctct tagagataag acaagtatat
     1201 ttggaagaaa aagtgaaaat aatcttaatt atttttatct tgcttctaat agcactacta
     1261 atttagatga aatgaataat tttataagca ttatagataa atatatcatt tttatcaata
     1321 aaatagatac attgcctgac acttatacac tcatgaaaat agcctttaac gctgattatt
     1381 ttctttttaa tctcgtccca tttgcttcaa gcctagataa aaactttatt tgctctatac
     1441 cgcaaaaaga acaattatta gaaaatatga taaattctta tgaaaaaatg gatttattat
     1501 acaaaacaaa actaaaaacc gaaattcaag aaatgatata cccagcgata tatgcaacaa
     1561 aaaaacttaa tcatttcata gatattgcca aaggaagatt aaatgcatgt ggaaaataat
     1621 ttaagtcctg aagatagaca aggtatagaa aattacctta ttattttaaa tacgataagt
     1681 tttctaggcg atttgaatat aaaatataac aatcataatg caaagattaa aaattattct
     1741 agtggttatt gtaagtatta ttgtaaaata gcttagattt taggattata aatgaaaaaa
     1801 cttttttata gacttaattt tttatttaat acaaaattaa aaaaattaac ttggattgta
     1861 gctatattat ttatcggata taaattactt ttttataccg aaattaaaaa tggttatgta
     1921 aaagtgactt tacgtcctat agtaacactt aatcaagtgg gttattgcat aaaagaaggt
     1981 agaagattaa gccaaaatga attatttgaa agagctacta aagattggct tgaaaaactt
     2041 tataaccaag cacatgatcc actagttatg aatgcagatg gagattggct tgatatcact
     2101 aattgctatt attcaagcaa agaaaaagca aagaaaggtt taaattgtca attttacagc
     2161 aacggcaaac aatttggtat cgatgatatt gcaaaacaaa ttgatcttaa taaaagccaa
     2221 gaagaaaata tgcaaaaaat aatgcaaggc tttagcattg taagaccttt tgaggaggaa
     2281 aaaattttaa cagatgattt agagcttaaa tattctttac tcttacaaga taggttaggt
     2341 gattttactt ttatgcctta tgatattaga tttattgtcg ttggtggtga tactggttat
     2401 tattcaaaat ttggttattc tgtttttgct ttaatgatac aaaaatattt tattggaaac
     2461 gaccatgact ttaaatttaa aaaaggcact gtagaatatt ggaaaaataa agataataaa
     2521 aacaatcatg aatacatata ttatcccatt acaaattgtg gcgaagttga aatgcgttat
     2581 gactttgatc ctcctggatt atattatcaa ttatttcatg atatgcaatg gagggatgaa
     2641 tggcatcgtt aaatttaaaa ggcgattatg gagtagaaat tttatcctat tatctttggg
     2701 ggcaaagcac accgccaagt gatttagcca gaaaagataa ccgtgtgctt ataggtaaag
     2761 attatcaagc aagagatgaa aaagaaataa tcatacaagc ttcagcactt gattatatga
     2821 aatatgtaga tagatatacc aatgctacaa attttgggat atttcaaaat tttttcaaaa
     2881 gtgtttttag tgaaaaagaa cttggggaat ttaaagataa aatagaaaat gaaacatata
     2941 ttttagaatt agacgatatc ataaaaacta aggtatatgg aggtgtaaat ccgtttcttg
     3001 atgaagataa taagaataaa gataaaagca ctaaagataa agaaaataat gaagaaaata
     3061 aatacgaaaa atacgatgaa aataaaatgg cagttagaat aattcattat tatttagata
     3121 caaattcagg caattatgct aaaagagctt ttgcttttgg aagcacaagt atagcattta
     3181 ataaagatgt aaaatttcat attagtgcta aaacttatga acctgtttgt atttccaatc
     3241 taaaacttta tcctttaaag gataattttg attttgaaag tgatagcagt cttgcagaat
     3301 ttgtaaattt ctttctagaa aaggaattag atcccttaaa aataggtaga acggttaata
     3361 ttcattttat agatcaagaa aagattacac ctatggttat ttataaaaga gtatttcaaa
     3421 tacttcaaaa ccaatctttt aattctttaa ctccttctat aacttcactt cgtgaatatt
     3481 ataaaacccg tatcctgcca tctggggtat tatatttgca agatgacaat acaaactctc
     3541 aaaccaattt agaacagact atcctctaca acaatacaag ttttaacaaa atttcaaaag
     3601 aacccttaaa tgaatcctca tccagtgcta aagaaccttg ctttatcact ttatatttaa
     3661 aagatgaaca caataaaccc attgctaatg ctaaaatcat tatcaaaggt tttaaacatg
     3721 atgaagcttt aagagtagtt aatctaaaaa gacgcagtga tgaaaagggt aaaataagat
     3781 ttgataaaga aaagtatttt agtgattgtt atagctttaa agtaaagctt gatgaaagtg
     3841 aagcttattt tcctactcct ttacaaaatg ctaaaaggat atttaataat tatacccatc
     3901 acaaagttgg actcatactt aaatttaaag caaaagatca tttagtttat gatggattta
     3961 atctctatca ttataaagga aatgaattaa ttaattctta tatggcaaga agtggtactg
     4021 ctaaggcaga taatgaaaaa agaagtaaaa agcaaattgc aaattatttt taccaagatg
     4081 aaaaagatac aagtaaaggt aaaaaagctt atttttatta tgatgatgaa agtattaaag
     4141 atagatttgg cactttgcct gaaggagaat attatttaaa gattaatgaa atagctaaag
     4201 atactaaccc tagcttttta aaagattatc cctttgaaat aggaaaaact tggggaaaat
     4261 gttgtgtaag attatatacc aataaagagt gttctaaaac ttttaaagaa gtaaaaataa
     4321 aagaaagtaa tgaaaaagaa aacaaaacaa gcaaaaaaga taaaaaagag caaagcataa
     4381 taaaagataa tctatatctt tatagtatca atgaaaaggg agagtttggc agtagtggta
     4441 gcataggtat ggcacaagca cagttattag aggatttaaa taagcaagct aagtttgtgc
     4501 ggagtgaggg ggaaaatata atctcactca aagtggctta ccctgaaaaa atagataata
     4561 aaattatatt tgtaggaaaa gtttatgaat aaaacactaa tatttcatga aaattcccat
     4621 attgatttaa atgcttcttt tgcaccaggg acttatataa gcttacaact agaaaaagaa
     4681 agcgatgaaa aactaaaatg ggcttttgta gaatgtgaaa gcaaagaaaa attaaattta
     4741 ttattacatg attgtaatgg ctatattgat gaaaaaaatc ttaaggtatt atttgaaaat
     4801 gatgatttga tttataatga aagctatgaa gacaatattt tatccttttg cttgcctata
     4861 aatagaagca acgagcctaa agaagacata caagattata aatactacat agttttattt
     4921 gcttatagta gtgaaaaaac tatgcctaat ttagaagatc attacatcat catagatatg
     4981 agctttagag tgggagttgg agatgatgag gatgtagaag aaagtaaact aaggaatgat
     5041 tttaatagtg atataattca aacaaattgt atttttagtg tttttgaggc tgtagagttt
     5101 ttaaaagctt gccaaagttt taaagaaaaa gcaaaagaaa caaataatta tgaatttttt
     5161 aaaaattatc cccaacttgc aggaaaaatt gcttatattt attatagatt tgatttagct
     5221 aatgaaaaat ttattaaaag tgtaagtgat ggagataagt atttaaaaga aagagagaaa
     5281 tttgttaaaa aatttataga tgtttattct gatgagaaat tttttatcat accaagctat
     5341 aaagcaaaat ttagtgaatt ttcaaacaaa agtgatgagg aaaaaattat gttttttcaa
     5401 gaatttcttg aagatttggt aaaagctttc gacatagaac caccaattcc aactatttat
     5461 aaagagttta aacaatacaa taacggatct tataatagtg taggaaaaaa agcattatat
     5521 ttgaatttaa aaaacaaaga agaacagata ttatcaactt tttttcacga atttagacat
     5581 ttttatattg ataaaaataa ttctaaagaa ataaaaaatc aacatacaga aagcattttt
     5641 aaactcatat attctaatgg atattttaaa tttgaaaatg ttgttatgtt ttgggcgtat
     5701 gataaaaaat gcataattag taataattat acagattgtg tcggagttaa accttataaa
     5761 tacagtatat tttcagataa gcctgcaatt tattggtttt ctccaagtga aagagatgcg
     5821 agaataagca cattttattt tgaaaaatat agaggttgat atgttagaag tagccataaa
     5881 gaatatattt aaacataaag atttcttaca aaccagaaaa gaaccttatg ctatttattt
     5941 agccataaat acaaacataa aaagttataa taatatttgc cctagcgaga aatatttttg
     6001 gaaatttaat gatatgaatg agcttgaatg ctataatcca aaatttggca tatatcttgg
     6061 taaaattgtt tttgataaaa aaggcaacaa actcatccca aaatacatac ccgctaaatt
     6121 tgaaaattta gaagaagaag ttaaaaagat aaaaaatcct ttatggcttg ctaataaaaa
     6181 tcctaattat attaaaccta aattttatga tggtatgggt gggggttatt attttgaaag
     6241 tccaaataat ttagagtatc aatgtaaaat agaaaaagac actcaaattt taagccaaga
     6301 acaaatcatt tcctatgtga aagaacttta tagtaaaaac acaatgataa taaaaaatta
     6361 tattgatgca atcaataaaa atcatggcat aaaacctttc gtatttaatg atgaaattta
     6421 tgatcaatta ggagaagttg gcattcttac aaaagaacaa gctaataatt ttaaagataa
     6481 aagttatatt aaaaaaaatc caatattgct tgctatgctt gattatttag caaaacaaaa
     6541 taaaaaagat gaagattatt taatcacttt tgatgatgag tatttttatg ctgatttggt
     6601 ttggagttta aaagatttct tattagagct ttcttatggt ttgtttcaag atgaaaccaa
     6661 gcttcttttt aatcctgcag cttatatgga tgacacaaaa atagattata aaaatttaaa
     6721 cgaagaaata aataagcgtt atgaaaaaat attgcttgat atgggatttg aaggagaaaa
     6781 tggttatttt aatgattatt atgattatgg ctttggcaat aatggtattt ttaaatttaa
     6841 catatatgat tattttgctt atgatgaaat aggagtgcgc ccatatgttt ctcctagaag
     6901 ccctttttat agccctaatt ttgtctattc tgatggaaat tatcacggag atgcaaagct
     6961 tatcccttct gctttaggaa agtattattt tgagctttcc tatcagaaag gagtttatat
     7021 agaactttta cgcccttatt atccaagcat aaaagattta ccagaaggtt gggacaataa
     7081 aatgctagaa aaagctaatt taaaataaat atgagcatcc gtgaataaac ccttctacaa
     7141 acttaaaaga ttttatatac cttgtggtgt gcttgtagct ttgattattt ttacaagctt
     7201 aacttatcat tttttacaac gacctttaga gcttatcttt tgggatagat atgatatatc
     7261 gaaattatct attaataacg aagagaaaaa ttttaaaaca atgaaaactg tgattactcc
     7321 tactttcgct aacacttaga agtaggaggt tcctaactaa agccaagtat tcttagctag
     7381 ctcgaaaggc ttcttgttta tagcttacac ctaaattttc atataaaata ttaaaactta
     7441 tacaaaaatc tttcataaat tgtttcagaa gttaaagaat ttgtttggta taattacatt
     7501 aagggtttaa gccgcaggct gaccccctac ggctaaattg tgaaacccct gaaaggaggt
     7561 aactcaatga ggctcataaa actcattcta gtggttatta tactgctttg tttatttata
     7621 gtcaaggcat attaaccaag cgccattttg gggaaactag agtgggttac ctgcggtatc
     7681 aaacaaactt ttaaccaagc ttatctcctt tatattgaat tattttattt tttaatttat
     7741 atttttcttg cttatactaa aagataagat tcaattataa acaaaatgta ttaagaagct
     7801 aaagagtttg tttggtataa ttataaaagg tagatgccaa agggctgcaa ccctttagcg
     7861 ttaatttacc gcccagaagg gaggtgatta aattgctaaa caaaattata gtaataatta
     7921 tactactttg tataattata gtcaagtgtt attaatactt gatttcccat tttttaaagg
     7981 ggagctataa ttttcccttt ggcttaccaa acaaactttt aactaaactt ctcttcttct
     8041 attgattttc tatatttgaa aaattttatt ttttaaaaag tatatgttaa agtatatgtt
     8101 ttttgtatta ttaatttttc aagtatgttc ttttggttat tttaactata aatcacagtc
     8161 ctcttgagcg caccatatta tttatcttct ttaatttttc ttttagctaa tcccatatgc
     8221 tcgtaagcat caatttcttt tttgtaagat ccagaaattt tcttaagttc tttatttaag
     8281 taacttactg tttgtgcact tgcattaata tttgcagcca aagcagaaac aaattctagt
     8341 ttcttttttg ctgcttcatc taattcttta gaagtttttg aaccaagttt atgtgtctgc
     8401 acataaagtt tggcaagttc ttttaattca atatccgtta gtttaacatc ggaagcagca
     8461 attatcattt tatctaagtc tgtatcaaat tttttagtct tttcagctac atgctgcttt
     8521 tggctagttt tttgcttttt aattgttttt ttgccatcac ttgtaataag ataagcaatc
     8581 acgcctaaaa acaataaaag cgctaaagca gcacaaaaaa taaccaaaaa aatatggttc
     8641 atttaaagtt tgcccacaaa atttcgcttc cttcttgcaa aaaaagctaa aaccaccatc
     8701 aatgcaaatc cccaataaac ataattagga atttgagccg cttcgcctgc agcgtaagaa
     8761 tgaagtccta ttaaaaagta atttactcca aaataagtca taataataac ccaataagca
     8821 aacatactcc ataaagcaaa cacaaattga ttacaatatt ttggaatcat tctaagatgc
     8881 aaaattgctg cataaaccaa aatgctaact aaagcccaag tttccttaga atcccaactc
     8941 caatatctcc cccaactttc atttgcccaa attgctccta aaaaatttcc tacagtaagc
     9001 aaacaaagtc caaaaatcat tgccatttca ttaattcttg tagcctctgt aatatttctc
     9061 aaaatattaa gattatattt tccatctttc ttaagaaaac acattaagaa caatgtaaag
     9121 ataccaagta aggcacaaag tcctaaaaat ccataactag cagtaataac agatacatga
     9181 atactaagcc aataagaatt aagcacagga acaagatttg taatttgcgg attcatttcg
     9241 cttaaatgcg caaccattaa tacaacacca gataaaatag aagttaatga caaggctata
     9301 ggactttttc tggagaaaaa tatacccgac aaagacaatg cccaagctat atacaccata
     9361 ctttcatagc cattactcca tggagcatga cctgataaat aagcacgaag tccaagacct
     9421 actgtatgaa ttgcaaaagc taaaacattt aaaacatata ccactttaaa tataaaagaa
     9481 atttttaaat tcggtacgat cattttagaa aaaacaagaa tcaagagtaa aaaacccgca
     9541 attaaatata caggagcgag tttaacgaaa atttcagcct tattagaaaa aatttccatt
     9601 tcaaccttgg ttttactagg catgacttta tatcctattt tttcttgata ttctttgata
     9661 aatttcaagc cttcatcagc tctagtccaa ttaccatctt taaaagcatt ttccacggca
     9721 ctaaaataat tctgtattaa agccaaaaca atatgccctt catccccctt aagagtagtt
     9781 acagcagaaa aaggtgcaag ccaaacatta tttggattat tttgaacagg aataaattta
     9841 aataattcac cactaaaaac taaatttaca atattagctc tttcatctag ttttataatt
     9901 tccttatcaa aaactcctct tgcatttggg tttttacgat ttgcattttc aatatatttt
     9961 tgaagtttat atcggttatt ctcatcaaag aaatctttat aagaaatata tttagcacta
    10021 ggaatttcta aaatatttgc aatagcatca cgaactgctt gattttgtgg cattaaaata
    10081 aaaggttcca tttgccattt atctacatca acgagcatgg aaagcataac agcgttagaa
    10141 ttttgaccct tatagctatc actttgatga attttttcta aaatttctct tgatagcgta
    10201 tcaaaaggca ccattcttcc atctgctgat ttttgaacta ttaaagtggc aagagcttta
    10261 gcatgattag tatttaccac aggtaaggtc gaatttaaat cttgagcaaa agtcttttca
    10321 gaaccaaaag ataacaataa aataaaaata atcacacttg tatgttttaa agtgtcttta
    10381 ttaattaatc ttgccaaagt tctaaatcta gaatgtggat ttaaaaaatt cataaacatt
    10441 ccaagacaaa gcagaaaata acctatataa gttggtattt tgcccggatc tttatttaca
    10501 gataaaacag tccctttttc atcttgatca taagaacttt gataaaatct atagccatca
    10561 taatctaaaa cattattcat aaaaattcta taatcaaaat tttcattatt attttttacg
    10621 gtaatttcac ttgcataaga agctggagac atagaacctg gataacgatc taatacaaaa
    10681 tctcttaaat aaatatcaaa aggcaattgt tcataagaaa gcgcccaaga aataaagaat
    10741 ttttgatctg caagttctat cataataggt ttattatatt caaaaatata aaattcttta
    10801 ctttcatttt tatagcttaa ttctaatttt aaagcattag agccagttaa ttctaagttt
    10861 ttattctcat tgcttaaggc aaaatcttta aaatgcaata ataaagaatt tttccaattt
    10921 tgaggctcgc caaaagtaga aatcaacata gttctaccca cttctaacca agcagattta
    10981 aaccataacc aaaaactttc atcttgaggt ctattggaac cttctaaagc ttcttgcgca
    11041 tgcaaagaag cagctttaac tacaaaacta atatcattaa tttcataaag tcttctttcc
    11101 ttagcatttg ccttttctcc aattttaagg tctaaatttt gtccatctag catacttaga
    11161 aaatgtaagt tttcacttga acttaaagtt aaattttcat caatttttac aaaaggtgct
    11221 ttaacattat cattcataaa agcaaagtta accccttcta tattcttaac ttcacctttt
    11281 tcaaatttaa catcaacacc ttgagatcct ttttgagaaa gcatcaaaac caataaagga
    11341 tcagaattat tattttcttt ataagtataa tgagcattta agattaaatc tttatatttt
    11401 aatacagctt gatcatcacc taaattaagt tttagtttaa aagaattagc aaaaggcaaa
    11461 tttcctatat aacgatcatt aaccgcacta tagcgttctc catcttttat agcagaaata
    11521 cgcaaagaag ttttagaact ttctataagt gaattttgag tatgctctct aataggtaaa
    11581 ataccttcaa aaccagcata tcttgtcatt gcagaaccca ctaaaataaa taaaaaagaa
    11641 atatgaaaaa tcattaaagg taatttttta agcccaaaca ttttataacg aaacatcccg
    11701 catagtaaat taataccaag taaaagttgt atatattcaa accaaaaagt atcataaacc
    11761 attgcccaag ccgtaggagt tccataagca ctttcaataa aagttgccaa agcacaaaaa
    11821 agcgcaaaaa gcaaaaacaa tacaaccgaa actcttaaat cccctatgct ttttattata
    11881 tttttcattc tttttccttt aaattttaaa gccctaaata tttctttcta atctcatcat
    11941 cacctattaa atttttagcc tcgttttcca ttacaatgcg accattttcc aaaacataag
    12001 cataatcact tatttttaat gcagaatagg cattttgctc taccaaaaga atagttatac
    12061 cctcttcttt taaacgcaca ataatatcaa aaacttcacc cacaatcttt ggagcaagtc
    12121 ccaaagaagg ttcatccaac atcaaaagtt ttggttcact cattaaagcc cttgaaatcg
    12181 caagcatttg cgcttcccct ccactcaatg ttccagctaa agcatgcttt ttacttgcaa
    12241 gtcttggaaa aagtttatac atttgctctc ttaaatgctc ataattttca gcattattaa
    12301 aagcacctat ttttaaattt tcctctacgc ttaaattaat aaaaacacgc cttccttcag
    12361 gaactaaagc tatacctttt tgaactaaag tatgagttaa atgcctttta gtatcataac
    12421 ctaagaaatt aacctcacca gttcttttaa ctgagtttaa aagcgcattt aaagttgaag
    12481 ttttacctgc tccatttgaa cctataagag aaacaatatg acctgtttcc actttaaaat
    12541 caatcccttt aacagcttca attaatccat aataaacatg caaatcttta actattagca
    12601 tcaaaatccc ctaaatacgc agcaattact tctttatgat ttacagcatc gcaaagttta
    12661 ccttcaaaaa ttgtttttcc ataatcaagt accaatacgc gatcacacaa tttatttaca
    12721 aatttcatat catgttctat aagcaaaacg ctaattttat aatcttttcg taatttaaaa
    12781 atgagctcag caagttcatc actctcagag ctattcatcc cagcggctgg ctcatcaagt
    12841 aataataatc ttggttgagt agccattgct cttgcaatct caacttttct ttgttgtcca
    12901 taactcaagc tagtagcctt ttcataggca aattctgcaa taccaagttc ttctaatatt
    12961 gcataagcct tctctttaaa tacttgttct atttttccaa aacgccctaa atgcaaaaag
    13021 gcttcaaaaa tattatattt catttgttta ttaaaaccaa taagaacatt ttcaagcaca
    13081 ttcatgcttg aaaaaagcct aatattttga aatgttctag ctattcctaa atgcacaatc
    13141 ttatgaggtt ttaagtgatc aattctttct cctagaaatt caaccgaacc tgaactaggt
    13201 ttatagttac ctgttataat attaaaaaga gttgttttgc cagccccatt aggtccaatt
    13261 aaagcaaaaa tttcaccctc attgatttta aaagaagttt cattaatagc cttaacacta
    13321 ccaaaacttt ttgaaatttg ttttaattcc aaaatcattt tttgctcctt ttaaaacgct
    13381 ttttaatccc tctaatcaca tcactcaact cataataacc cattatgcct tttcttgcaa
    13441 aaagcattac taaaatcaga acaatagaaa aaacaaccat tctaagccct ggcgttgatt
    13501 ggatatcaag atttaaagaa tctattttta tatttaactc atctaaaaat ctaagccact
    13561 cacttccacc aataaccaat atcgcaccta taatagcacc tgtagtagaa ccaagtccac
    13621 ctaaaacaat aataatcaaa agctgaaaag taagtaaaaa atcaaattga gttggagata
    13681 cggtagtcaa cagacaagct aaaagtccgc cacctacacc ttctaaaaat gctgaagtgc
    13741 taaaagctaa agtttttatc caaaaagtat ttattcccat agcgcttgca gcatcttcat
    13801 catctcttat agccttcatt gcacgaccat atttagaata aactatattt aaaattaaaa
    13861 taaccgctac aatagcaata ccacctgtcc aatagatcgt ggaaaattgt ggaatatcta
    13921 ccagccctct tgagccatta gtaatagaag gaaaattaat agcagctatt ttaataatta
    13981 ttccaaagcc taaagttaca atagccaaat aatcccctct cacgcgaaat acagcaaaag
    14041 ccaaaatcag ggcaagtaaa gatgaacaaa ttccagccat aattaaagct agaataaagg
    14101 aatttgaatg gatagctaaa ataaaagaac taggaccatc taaaaaaaac tgatcatttt
    14161 ttgcatcagc acttaaaaga actaaagcag ccacataagc tccaatcgca acaaatccat
    14221 tgggttctag tgaaaattgt ccagttacac cattaataag gttgtaactc acagccaaaa
    14281 taataaaaat agcaatttga ttaacaatgt ttaatccata gtccccaaaa atataaggag
    14341 aaatgaaaat aaaaataatt gaagcaatta aaaagattaa atgtgaaacc ttaattctaa
    14401 ccatcattaa aacctactct tttcaaaatt tatacctaaa attcccgtag gcctaaataa
    14461 caatataaac accaaaaaaa taaaagcaaa tgcatcttta aagcctgata aatctggaaa
    14521 aaaagccaca acaacaactt cagtaaatcc tataataagt ccacccaaaa ctgcacctac
    14581 tacagaacct atacctccta aaactgcagc agcaaaagct tttaaaccta ttaaagttcc
    14641 catagtaggt tcaacagagt aataatttgc agcccaaaaa acacccccaa ctgctgccaa
    14701 agctgaacct agggcaaaaa ctatagcaat aatacgattt gcatctatac ccattaaatt
    14761 tactgtttgt atatcaaatg ccaaagcacg aatagctata ccatatttgc ttttatacaa
    14821 aatccataac actgctatta aaataacaaa tgtaagagca ggaaccatta aagaaccata
    14881 agttgttatc actccaccaa aattaacact ttcctcaaaa taacttggcg gtgtaaaagt
    14941 tctaggtgtt gaagtaaaaa gcatattaaa aagattttgc aagaaaaaac taataccgat
    15001 tgctgtaatc aacaatgaaa ttctaggagc ctgtcttaaa ggtttataag cgattctatc
    15061 tgtagctatt ccaacacaag cagcaaaaat cattgctaaa gacaaagctc ctagaaaagg
    15121 aacatttaga ttagtcatgc aaaaaagagc cgcataagca ccaaccatca taatatcgcc
    15181 gtgagcaaaa ttaataagtc ttaacacgcc ataaatcatc gtatagccaa cagcaataag
    15241 agcatacata ctgcccaaac taagtccatt aacaagttgt tgtaaaaata aagtagaatc
    15301 cataatcttt ctatttttcc tttaaggatt gataatatct ttataatttt gcttctgatt
    15361 tttaatttct ttaaccacta cagaacgagt tgcatttcct gtttgatcaa tactgataac
    15421 accagaaaca ccttgataat ttttagtttg gtgaattttt tcattgacac acttactagt
    15481 aagattttca acgcaagcat tcatagcatt tagcattaca aaatacgcat cagcacccat
    15541 agccgaaaaa tttggaactt cttttgttcc tttagctttt tcataaacac tgataaattc
    15601 tttgcttaat tttgtagttg gattattagc atcaaaacta tctgtgaaaa tataaccctc
    15661 gcttgcatct ccagctaaac taataaaagt ttgatcagca actccatctg cagaacccat
    15721 aggaatattt aaacctgcga gttttgattg tcttgcaaat aaagaagctt cgctataata
    15781 aagcggtaaa aaaataaatt ctggatttaa acttttaact tgagctacaa tagctctaaa
    15841 atctttatca cctgaattaa ctcttaaaat tctaagaatt tgaccaccat tagacttgta
    15901 ctgtttttca aaagcttttg ctaaacctaa ggaatagtca gtgctttgat ctactacaat
    15961 aacagcactt ttgtaattaa gttttgaaaa aacatatttt gctaaagatg aaccttgaaa
    16021 actgtccata aaacatactc gagaagaata tattttttta tcaagcaatc tatcaccagt
    16081 tgcagcagga gcgatcaatg gaattttatt atcttctgct acgcgcataa cttgcaatgt
    16141 attagcagta accatttccc ctataaggcc tataacttta tcttgagaaa ctaaacgatt
    16201 tgctccactc gaagattcta atttatcacc tttagtatca ataatagcaa gagaaacctt
    16261 atctccatta cttaaagctg attgcattga atttgcaagt ttaatccctt ctagtgcgct
    16321 ttgtccatat gctgcagtag ctccgctaag cggtaaaaca actcctattt tgacttccgc
    16381 agcacttaaa cttaaactta gaatacttgc taaaattaaa ctttttttca ttctctacct
    16441 ttattttagt aattatggat ttataattgt tttataattt tgtttttgat tttgaatttc
    16501 tttaatcaca acagaacgaa tggcattacc gctttcatct atgctaatca caccaccaac
    16561 agcttgaaaa tctttagttt gatgaatttt gctattaata cattcgctgc taagattatc
    16621 aacgcaagca ttcatagcat ttaacattac aaaatacgca tcagccccca tagccgaaaa
    16681 tgctggaagt tcttttgttc ctttaacttt ctcataagct gcaacaaaat cttttcctaa
    16741 ttgtgtagat ggactgttat aatcaaaact atcagtgaaa attactccat taacagcact
    16801 tccgccaaga tctataaaag tttgattgtt aacaccatct cctgctgcta aaagtttatc
    16861 aaaaccaatt tgtcttgctt gtctcgcaat taaagcagct tcaggatgat aaataggcat
    16921 ataaacaaaa tcaggattta aactcttaag ttgagaaacc acagctctaa aatctttatc
    16981 tcctgaatta ataacaagtt tttttataat tttcccacca ttattcttaa aagaattttc
    17041 aaaagctctt gccaaaccta aagaataaac attgctttga tctatgatga taacagcatt
    17101 tttaagtcct aaatccttag atacataagt agcaaattta tctccttgaa aactatcttt
    17161 aaaacaaact ctacttgcat atttcttttt atctagcaat ttatctccag atgccactgg
    17221 agctattagg ggaatttttt tctcttctgc tatagaaata gcttgaatgg tatttggagt
    17281 tgtagcttca ccaataatcc caaggacttt atctgttgct attaaacgat taactccatt
    17341 tgaagtttca agcttatctc cttttgtatc tattgtgata agtttaataa catctccatt
    17401 tgaaagtttt ggctgtagct tattagccag ttcaattccg ttaaaaacat cttgcccata
    17461 agctgccaca gttccagtta aaggtaaaac tactcctata ttaatatcct tagcatataa
    17521 gcaatttacc atagttaaaa cacttaaagt taaagttagt tttttcatag tattcctttt
    17581 aattatagtt tttacatttt attttagaaa tatattatgt tttgtttttt gcgcaggttc
    17641 ttcttcaaga agatctttta cttgcaaatc aagcgcaaaa tttccacctt taatataagc
    17701 aataatatta tctatatcct cgtggcttaa atttctagca taaaaagcca tttgagaagc
    17761 tgttgtagaa ctgctactat caagagtata acctatcaaa gctcctttaa tatcctcagg
    17821 agacatatct tttaaaattc tagatcctat aacactcttt tcagcattat ctccatggca
    17881 agtattgcat ttattttgaa aatacaaagc cttcgctttt tccatatcat attgcttatt
    17941 tgcatcaaag gtataagtaa aaaatgattt caagttaata ccaaaaagcg caacaacaaa
    18001 tattgaacta ataaacaacc agcgtgcaat catgattttc cttattttat tgtaatttct
    18061 gtttgtgttt tattttgata tctatgtgtt tttttgttgt attttttttc ttttttaata
    18121 tcatagcgat aacgaacagt ccctgaaact tctatatctt taaagacttc atctaacgga
    18181 gctgcaaaaa caaaatgatt taaaatcata ccaattaaaa atattttttt catttttatt
    18241 ctttaaacac aaaaaaacga ttatatcaaa aaaagataat ccttgttaat gaccaccttt
    18301 gtgtaaaaaa taaagtccta cacaaagagc taaaatcgat ccagcaagaa aagccatatc
    18361 cacaggagta gcaaatttca tctgtaaaac cctttgaaag aaatttacca ctaagaccat
    18421 aatgataact tttgcaagct tgtcttttaa ttgatctaag ctatgcacct ctaaaacctt
    18481 gctttgtttt gtttgtttaa attcttctat ttcgctgata aaaagctcat aaactccaaa
    18541 agaaaaaata aacaaaacta aagccataag ataaagatca acagctccta taattaaagc
    18601 caccacatcc tcatgcaaat cgacattaga acctgcatca aaaaaataat tataagtata
    18661 aaatataact tttaaaacat cataacttgc aataaaaaac aatacaaaag ctccaattaa
    18721 accaaaaatt acgggtaaaa ttgtaacaat acgacttcta acaagtaaag attcaaatat
    18781 tttctctaac atttttttcc ttatttattt tttaattcta accatttttg cgcaatacgc
    18841 acagcatttg ttgcagcacc tacacgaatt tgatccgcca cacaccaaag atggagtatt
    18901 tttttatcat acacatcagc acgaattctt cctacataag tttcattagt atcgctagtc
    18961 attaaaggca tagggtattt tttattttta ggatcatcta tgacaataac acttggtgct
    19021 ttttttaaaa tttctttagc tttttttaca tctatttctt tttcaaaatg catagtaatg
    19081 gcttcgctat gacttcttaa aacaggcact ctaacacaag ttgccgaaac ttctaaattt
    19141 ttatgtaaaa ttttttgagt ttcattgacc attttaagtt cttctttagt gtaatcatta
    19201 tccataaaaa catcaatttg tggaataaga ttaagtgcca aagtataagg aaaagtttga
    19261 ggttcaaatt catcaagttt aaaagcaaaa aaactttgca tagcttcaac caattcttgc
    19321 attccttctt ttcctgctcc acttgcagcc tgataggtac ttacatcaac acgctttaaa
    19381 ttaaatgcat catttaaagg ttttaaaact tgcaccattt gtatagtaga acaatttgga
    19441 ttagcaataa tccctgtttt tttccaatct ttaatatcct caggattgca ttcaggaacc
    19501 accaaaggaa catctttttc cattctaaaa tgacttgtat tatcaataac aacagcacca
    19561 gattctactg caaatttagc atatttttca ctcacacttg cacctgcgct aaaaaaagca
    19621 atatcaatag gattttcttt aaatacattt tcggtaagtt ctttgacttt ataagctttg
    19681 cctttaaatt ctacttcact acctacactt tttgcacttg ctaaaggtaa aatactttcc
    19741 actgggaaat caagttcatc taaaacattt aaaagctctt ccccaaccgc accagtagca
    19801 cccacaatgg ctattttttg tttttttgac attacttatc ctttatttga tattttttaa
    19861 ttttttcatt taaaattttt atatccatac ctaaaatttg agaagcttga tccttgtcat
    19921 aatctacact taaaagaact tcacaaatca attctttttc taaattcttt acatcttttt
    19981 ttatacttct agcttctaag aacaaatctt cacttgaaat ttcatcattt tcacttaaaa
    20041 tacaagctct ttgtacaacg gatattaatt ctctaatatt accaggaaaa tcatattcaa
    20101 gtaaagcatt tttagcttct tggctgagct gtttttcctt aaaatcatat tctttacaag
    20161 tatcttctaa aaccttttga gctataccta aaatttcttc tttacgctct cttaaaggcg
    20221 ggatattaat aggaacagtg tttaaacgat aatataaatc tgaacgaaat tcaccatttt
    20281 ttattttttc atctaaattt gcattagttg cactaataat tcttacatct attttgatgc
    20341 tttttgtact tccaagtcgt gtgatttctt tttcttgcaa agctcttaaa agtttagctt
    20401 gaatttcata aggcatttca ccaatttcat ctaaaaacaa agtgccctca ttagccattt
    20461 caaaaagccc tattttagtt gcattagcat cagtaaaagc acctttttca aaaccaaaaa
    20521 gctcactttc aatcaaattt gcaggaatgg ctgccatatt aatagcaata aaaggcttat
    20581 tagagcgttt agaatgggtg tgaatataac gagaaaatac ctcttttcct actccacttt
    20641 ctccaaaaaa cattacagag gcatcagttt tagccgcttt ttgacttaaa tttaatgttt
    20701 tttctaaatt aggagaagtt gaaaaaaaat ctttattttc ttcttttttt tcattttttt
    20761 tgcttttttt atcggctgtt ttttctctta tgattttagc acgcttaata gcctcgacta
    20821 aagtatcaac atcaaaaggc ttggttaaaa aatcttttac tcccaaacga accgcttcta
    20881 tagcacggct taaagtagca tttcctgtca taataataaa atcatattta ttttcacagg
    20941 ctttaacaaa ttctatgcca tcaattcctg gcatattaat atctgtaata atcaaatctg
    21001 tattctcatc tatttttttt aaagcttcag tggcagattt ataagattta atattaaatt
    21061 cttcatactc tgctaatgca atttctaagg atttgcgcat attaatatca tcttctacta
    21121 tgactaaatt catcctaagc cttttaaaaa atttctacta tagtatccaa tttgcgctta
    21181 attttgaatt tacttttttt taagataata aattatcgca ttttgttcgc caaattctac
    21241 ggtaaaacgc aagggtaaaa ttttaacata agtttcactt tgagcacgta ataagccagt
    21301 attaacaata tccttaacac tgattctagc tcctataaag caatcgctta actcatcttt
    21361 atgagaattt aaaaaattaa atttaattgt ttttggcata ttatcatcaa tcaatcctaa
    21421 agaagttcga ggtaaaactt ttaaatcttg atcactataa gaaatttcac atacccattg
    21481 ttcttcaaca ttttcgcttt gcgtcattgc taaggataaa ttttgatttt gatgaaagag
    21541 aatgaaattt ttactagaaa gctctgccca aaaaataaat tcatcttggg caaaaagctt
    21601 aaagctaaga aagattaata agcaaacaat tctttccact tgtctgcatc gattttaagt
    21661 tctaagttta ccctataaag cccttgatta aaattctgat caataatact tgcatttttt
    21721 atcaaaccat ttacttgcgc agtaatagtt gaacttctaa gcattgcatc ttttacggtg
    21781 tctttaccat tcactttcac accataaagc ttacttgcaa gctgtctgta agcatctgta
    21841 atcgctgctc tttttgctaa agctagggct tgagcagtag aaactgtatt catcggagca
    21901 atcccttcac caactgctgt aaaactaagt tccgtttcgc tagcatctgg agccaacatt
    21961 ttttcttctc tgataatatc acgcacatca tctttatcga ctttttgcac gataacatct
    22021 tgagatgggg cagtgctatt tgcacttgaa tttttagttg cactgtttgc acttgataca
    22081 caaccagcga aaattcctgc tattgctagc ataaaataaa tttttttcat ttttacacct
    22141 tcaaaatatt gtaattagta aaaaataaaa agcaataagc gttccaactt taaacttatt
    22201 acaaatctaa accaaagttt tcatcgctta actcatcctc atcattttcc tctttaggac
    22261 acttagcgat gctaaccacc tcgtcatttt ccacattaac tacaatgaca ccactcgtat
    22321 tacgccctgc ttttctaatg ctttgcatat caacacgtat catcttgcct gaacttgtaa
    22381 gagccatcaa atccatagtt tcatctacta taactacgct aataagatct ttggtttttt
    22441 ctgtaagttt catacaaatt acacccttac cacctctgct ttgcaatcta tattctccag
    22501 catttgtgcg ttttcctata ccttttgcac ttatgcttaa aatttcttgc tcatcatttt
    22561 ctataacaac tgcacctact aattcgtcat ttttctcttt aaacttaata gccgtcaccc
    22621 cacgacttac acggccgatt tcacgcactt tagcaagtgg gaatttgata cacatacctt
    22681 ttttggttac tgcaaagagc attttacctt gtgtgcttac actttcttca ttttcaagat
    22741 tttcatcatc taaattttca atttcttgat tttctaaatt ttcttcacca ccagtggcaa
    22801 aaatttcatc ttcatctctt tgaacaataa tagcagttac caactcatca ttttcatcca
    22861 agttgatcgc tctaactcct acacttctga tattttgata ttcactcaaa tttgtacgct
    22921 ttacaatacc atttttagta aagaaacata aagatttact ctcatcaaaa tccgtggttg
    22981 gaataatagc catgattttt tcttcagctt gtaaattaat aagatttacc actgcttttc
    23041 ctttagccgt tcttgagcct tcaggaattt tataaacttt aagccaataa agctgtccac
    23101 gatctgttac aaacataagt gtatcatgtg tatttgccgt aaagaaactt tctataaaat
    23161 catcatcata agtcgtaacg gctaattttc cttttccgcc tcgtttttgc ttttcatatt
    23221 gtttactagg cacacgctta atataaccac gatgcgtaat agttacaacc atattttcat
    23281 taggaatcaa atcttcaata tcaatatcat cataatcatc ttcaatttga gtaatacgtg
    23341 gcacatcaaa tttacttcta atttctttta attcatcgcg aattaaattt tcaagcaagg
    23401 tttcactttt taaaatttct tcaagtcttg caatttcttt cattaattct acaagttcat
    23461 tttcgatttt ttctctttca agtcctgtta aacgaccaag tttcatatct aaaatagcat
    23521 tggcttgaag ctcactaaga ccaaatttag ctaccaaaga atctcttgcg gtattattat
    23581 cagaactatt tttaattaaa gcaatcactt catctatatt atcaagtgca attttaagac
    23641 cttctaaaat atgagctctt gctcttgcct tttgaagttc aaaaatcgtt cttctaataa
    23701 taactgtttt tctatgggtt aagaaaagat ttaaaagttc taacaaagag aaaattttag
    23761 gttctttatt gtgaattgcc aacataatca caccaaaagt actttccata gtagtagatt
    23821 taaatagatt gtttaaaaca atttcactca tagcctcacg tttaagctct ataacaacgc
    23881 ggattccttc tttattgctc tcatctctta cttcagatat tccttcaatt tgcttttctt
    23941 taacaagctc tgcaatctgc tctataagcc tagctttatt ggtttgataa ggaagctcat
    24001 ctataacaat aacatcttta tttgtctttt tttcaatatg agttttagcg cgcactttca
    24061 cgcgaccacg ccctgtgcga taagcttcta taataccttt tttaccataa attattccac
    24121 ctgttggaaa atctggacct ttgataaact gcataatctc ttctaagctt gcatctttac
    24181 tatcaagcaa atataaaagt ccatctatca actcatttaa actatgaggt gggatgtttg
    24241 tcgccatacc tacagctata ccacttgaac catttaataa taaatttgga accctagaag
    24301 gtaagacatc aggttcactt tctgaaccat cataatttgg aacaaaatcg accgtatctt
    24361 tatctatatc ttttaaaagc tcatgagaaa gtttactcat ttttgcttca gtataacgca
    24421 tcgcagcagc gctatcacca tctatagatc caaagttgcc ttgtcctgta atacttggat
    24481 atctcataga aaaatcttga gccattctaa ccaaagcatc ataaactgct atatctccat
    24541 gtggatgata acgacctata acagcaccca ctatacgggc tgatttgaca aaatctgttc
    24601 tactttttgc ctcatcattt tgcatagcat ataaaattct tctatgaaca ggctttaaac
    24661 catctcttgc gtcaggcaaa gcacgaccta taataacact catagaatag tctaagtaac
    24721 taccttttat agaattttct atatctacaa gttcaatatc agaatctttg ctaaaaatat
    24781 tctccataaa aatccttcta ttagttcaaa gttttgatta tagcatatta aacttttgca
    24841 tcagctaaaa caagagcaaa aagtacagaa attttatttt cttctaaaac ttttttagct
    24901 tccaaaaggc tagaaccagt cgttacaata tcatctacta aaattacagg ttcgtgaata
    24961 gtttttaaga gtttgtaatt tcttttatgt ttttgacgaa attctaaact ttttccagaa
    25021 tatttaatat gattttgtgc ttttaaaaca ttaaaaacag gttttacaaa ttttgtttta
    25081 agatatctag ctaaaatagc agaatgcgaa taaagcatat cttcaacctt atcatctaaa
    25141 gctataacat taattgtcat tctaggatca aaaaaatctt taaattttgc aaaacttaat
    25201 ttagcaagca ttttataaac aaaataacca taaaaataat gtttagagtg aagcaagtgt
    25261 tgtatttcat ggtatttata aaaagaatag actttgaaat tattatcaag ctttcttaca
    25321 tttaaggaaa attcagaaag ctctagctcg cataattcac aaaagcagag cagagtaaaa
    25381 gctccgcaat ttatacacct caaagttcag agattaaact agctgcttta tttgccattt
    25441 gttttattaa caaatgagta taaaaagttg tttcttttaa atcatcaaaa ccttgtacat
    25501 cttgcttggt acggattgta aatttcttat ttttatttat atcactaact tgtaaaactc
    25561 ctactagttt tgaatgtaat cctatagcat cttgagttgc tccataagat ataaattcta
    25621 aatcaatctt actcacataa ggtgaatttt gatcgttatt gtcaagcaca actattcctc
    25681 tagcttcaag ttcttgtttt aaataagtat aaaataccgc attaaaattc acatcaacaa
    25741 ataacttttt ccctttagca tttaaaacct tttgcccttc ttttaaatca taaaatctat
    25801 gtaaataaac ctttttcaaa gcaataccag tgtctaaagt gcgtttattg gcacaacatt
    25861 gaattccaac atcgctaatg tataaaagcc ctttaatctt tgcttcaaaa ccaccaggac
    25921 tttcacaaga actgcattga gaatttttag aaatttgatt aacttgagca aaagtatctt
    25981 gtttagttgc acaagcactc aaaaataaaa taggcactat aaaaatcaaa aattttttaa
    26041 acattttttc tccttagaaa attattttaa aattgtatta aaaatacaag caaatttcaa
    26101 gccaagtttt aaatttatca tcaatctatc tttaaaacac tcaaaaaagc ctcttgaggt
    26161 aaatttacct tacctatagc tttcattctt tttttacctt ctttttgctt ttctaaaagc
    26221 tttctttttc tagtaatatc cccaccataa cattttgctg tcacattttt acccatggat
    26281 ttaacagttt ctcttgcgat gattttattt ccaatacttg cttgaatggc cacttcaaaa
    26341 agctgtctag gaactatttc tttcatagca ctaacaagtt ctcttccttt actttgcgct
    26401 ttttcattag gcacgataat gcttagcgca tcaacatttt cacccgctac cttaatatca
    26461 agttttacca aatcccctac tctaaattct ataggctcat aatcaaaact cgcataacct
    26521 tttgttaagg actttaattt atcataaaaa tccatcacaa tctcatttaa aggcacatca
    26581 tattctagca aaacacgctc aggtgtgata tagtccattt taacctgtac tcctcttttg
    26641 cgatttaaaa gagtgattaa attccctaaa aattcacttg gagtaatgat agtagcttta
    26701 acataaggct cttttatatg atcgatttta ttaacaggag gaagctcgct aggattttga
    26761 attttaataa gctctccatc ggtttgataa atttcgtaag tcacagttgg agctgtagca
    26821 atcaaatcaa gattaaattc tctctcaagc ctttctttga taacttccat atgtaaaagc
    26881 cctaaaaatc ctaccctaaa accaaagcct aaggccaaag aagtttcagg ctcataagta
    26941 atagaactat cattaagctt taatttatcc aaagcatctc ttaaatcttc aaatttatcc
    27001 gtttctatag gataaagtcc cgcaaacaca aaagctttag ccttttcaaa accacctatg
    27061 gcttctttag ctttgttttt taccaaagtg atggtatcgc ctacttgtac atcacctacg
    27121 gttttaagcc ctaaaaccac cacacctgct tcgcctgatt gtaaagattg agttttaatt
    27181 ggacttaaag ggtggggata aaaaagatct tgaactatat gttttttatc cgtactcatg
    27241 actaaaactt catcgttttt agcaatactt ccttcataaa tcctaaccaa agccaaagca
    27301 cccaaataat tatcaaacca agaatcataa attaaagcct tagtaggagc ttcatcatct
    27361 gtttttggtg cagggatttt agtaataatt gtttctataa gctcttttat acccactcct
    27421 gtttttgcac tcacgcaaat tacatctttg caatctatac ctataatatg ctcgatttca
    27481 tgctttactt tctcaacatc agcattaggt aaatcgattt tattaatcac aggaatgatt
    27541 tcaagattat tttcaagcgc tatataaaca ttagctatag tctgtgcttc aacaccttga
    27601 gaagcatcta ctacaagcaa agccccttca caacttgcca aagaacgact cacttcataa
    27661 gaaaaatcca catggccagg agtatcaata agatttaaaa caaaattttc attattaaat
    27721 ttataattta aacgcactga ttgtgctttt atggtgatac cacgctcttt ttctatatcc
    27781 atagtatcca taacttgtga actcatctgc ctatcgctaa tagcaccaca ctcactaata
    27841 atcctatctg caagagtaga ttttccatga tctatatgag ctataataga aaaatttcta
    27901 atatttttta ccgacaaaat ttcatcctaa atataaaatt ttaaagctag gattttaaca
    27961 a
//
LOCUS       DBBXPZ010000014        27008 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.014, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000014 DBBXPZ010000000
VERSION     DBBXPZ010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 27008)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27008)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27008
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.014"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..2057)
                     /gene="copA"
                     /locus_tag="ACJFD7_000462"
     CDS             complement(<1..2057)
                     /gene="copA"
                     /locus_tag="ACJFD7_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase CopA"
                     /protein_id="HGG0859307.1"
                     /translation="MEELRIKIGKMTCVNCSNAIERACKKIDGVKDASVSYVNSSGVF
                     LLEDQEKRKDIIAKIQNLGFEILEDEQSLNAYKAKKHLELRKNLLLSIVLSVIIMYFE
                     MFVKSSFSQNIQMALSFFGIFYCGRDFFSHAFLGFKSKNLDMNTLVALGTLSAFVYSF
                     LVYLQIFKEEDLYFSGAMMIISFVLLGKYLESKAKFKAQDYQRILENIDTKKTKILLE
                     DESIKEISSSFVKSGDVLLVKEGESIVADGVVLLGSAELDMSFLNGEFLPVLKKEGDE
                     VQAGAVVLNGALRIKANKKAMDSTLEQIKNLVFEAGSIKSPLANLADQISKYFVGGII
                     FFAFLVFVFWVLKADLNTAFLHSCAVLLISCPCALGLATPIALVVASANAAKNFILIK
                     NPAALEKLALVKYAFFDKTGTLTKENLSIFKHNLSKDDFDKLCQIESLSSHPIAKALH
                     KDHFFDLKGEGRVIVGSGIKYKEDNDNYLVGNAQFLHENEIDTKESDIFFDTFKEYVR
                     VYFAKNKKCLGGVLLSNALKDGAKELVLNLKKQNLKTFILSGDHVKNVEKIAKELQID
                     EFHAQLKSEEKLQIIQKFKKTLFVGDGINDAAALSAASVSMSFSKANELAKKTGDFIL
                     IKDDLSAIFKCFKLAKKTRGIIKLNLFWAFIYNVLCIPIAAGFVPFISLSPHIAALAM
                     CFSS"
     gene            complement(2057..2251)
                     /locus_tag="ACJFD7_000463"
     CDS             complement(2057..2251)
                     /locus_tag="ACJFD7_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HGG0859308.1"
                     /translation="MKFKVKNVNCMNCVNLIKNSLEDEFGNIEVDLEQKILSLNLEEN
                     QVSNFTKEFQDLGFEIVERL"
     gene            complement(2241..3191)
                     /gene="czcD"
                     /locus_tag="ACJFD7_000464"
     CDS             complement(2241..3191)
                     /gene="czcD"
                     /locus_tag="ACJFD7_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter CzcD"
                     /protein_id="HGG0859309.1"
                     /translation="MYKFLSHEPLANKSCHHNHEEHSHEHHHSHADARSMDKKILKIS
                     LLMTFSMMLVQFIYSILSNSLALLSDTLHMFSDVFALALSFLAIIAVEKWQDHQKTFG
                     YFRLEVLVAFINALTIILSALFIIYEAIEKFINPKEIDAKTMIIVAILGFLVNGINAL
                     MMFKGANLENVNMKSAFLHMMSDLLGSLAVIIGGIVVYFSGIVYIDTILAIVLSILLL
                     RWAIILLKQSANVLLESSPVDIEKVRQVLLLNPSVDEVVDLHITQITNKMLVASMHLK
                     VRVCNLKEFEKLSQDLSHKLLHEFEIGHITIQPIRSENEI"
     gene            complement(3266..3529)
                     /locus_tag="ACJFD7_000465"
     CDS             complement(3266..3529)
                     /locus_tag="ACJFD7_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HGG0859310.1"
                     /translation="MLCPVCNVDLVMSDRSGVEIDYCPKCRGVWLDRGELDKIIERSV
                     PNTANFNQAPRQESRYNDSAYHQHNDYYKKKKKESWLGELFDF"
     gene            complement(3599..4093)
                     /locus_tag="ACJFD7_000466"
     CDS             complement(3599..4093)
                     /locus_tag="ACJFD7_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HGG0859311.1"
                     /translation="MIEFILRDMFFAAVAGFGFAYACNPPLKTLILSALLAAIAHGLR
                     FTLVEYFHFQTLAIATFVASFCIGCLGIVLAKIIKTPAEIIAFPALIPMIPGIYAYKA
                     ILYLISFIRSDDLKAKSEFLVQFFDYFFTTVSVTLALAIGVSVTLLIFFEQSFMMTRH
                     AKKH"
     gene            complement(4090..4866)
                     /locus_tag="ACJFD7_000467"
     CDS             complement(4090..4866)
                     /locus_tag="ACJFD7_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HGG0859312.1"
                     /translation="MEKPDIQRLTNFLIVYTKTLLGAGTYTARVAKCVGRIAEVYGYE
                     ININFFFHHITLNVVDMDDNSIQRTYVIPNHHAHVNFKLIFDLSALSWAIYDHKYDLE
                     KAKVVFEQISQQKKHSYLLNLLFVSMANSAFCRLFGGDFGAGNLVFFATFVGLLLRYI
                     LTKAKIDLRIQYILCSFISSWFVFFGLDMGYTNTSDVALGSSILYLIPGVFFINSVID
                     ILKDHILMGLSRIISVAILICCIALGIYMTLSISDFGILR"
     gene            4933..5859
                     /locus_tag="ACJFD7_000468"
     CDS             4933..5859
                     /locus_tag="ACJFD7_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HGG0859313.1"
                     /translation="MAKIGIVGLGYVGAASAYSIVTQGICSELYLYDIKQDLALAHAR
                     DLEDMSAIHFSYTKIFHVPNLENLASCDIIILAFRKESLKELPSRLVELQNNILELKD
                     IVLTLKNANFKGKYIVATNPNDTITYYTQVLSQLPKNHVFGSGTNLDSSRLKKFLAKD
                     LNINSKDIFACMIGEHGDSQFAALSNASILGQNLLDFYKQRLGKDLDIQELEKAVISE
                     GYFIYERKGRTEFGIGTSCANLAKAILEDRKSLHPVSVVFDDIAFSMPAIIGKDGIEK
                     VFELKFNEKEKTKLENSKQQIKNAIQSVKDKI"
     gene            complement(5856..6458)
                     /locus_tag="ACJFD7_000469"
     CDS             complement(5856..6458)
                     /locus_tag="ACJFD7_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HGG0859314.1"
                     /translation="MQEIISLIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGY
                     LAHKGELDITLCILSGTLGSVLGALINYYICFFWGKNFVLKWGKYFGINEAKFAKFEE
                     FFNKHGEFSTFTCRLLPGIRQYISMPAGLVKMKLVNFILFTALGSAIWVAILVFLGYY
                     IGQNEELIKTYLTQILIIIIVFVILASLIYIKIKKPFKKA"
     gene            complement(6539..6766)
                     /locus_tag="ACJFD7_000470"
     CDS             complement(6539..6766)
                     /locus_tag="ACJFD7_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859315.1"
                     /translation="MRKILFASLLPIIALADCASLMAKYEAPEPESKTMKQVERWINK
                     KVSDPADAAVLKECMIARAADNPNQVSVAGK"
     gene            complement(6777..8195)
                     /locus_tag="ACJFD7_000471"
     CDS             complement(6777..8195)
                     /locus_tag="ACJFD7_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3373 family protein"
                     /protein_id="HGG0859316.1"
                     /translation="MKTKFSLILSACLLSSSLFAKNTDDEITKLQKQLAQIQAELAQI
                     RKEREAQAKQNEAVKAELADLNDRADETEFQAALSKVKFGLEFSTAVSNTNYKVSGQD
                     YSANNKWMNELHLNMNADINDKTKFYGRLSMAKNWSQMGWSGSPLDLDAGRNTRTSGP
                     VLYVDRAYLDYYITPEWIATVGRQPGTDGPGSNLRNNALRQSTYPALAINALGDAAVI
                     TYKPESLQDHKVAIRAAYGKTYQWDEEGKVRDWMSDQKDADANLYYAAVEGELPIEGM
                     GDNLLLLNVAYISDFSLPIDGGAIINNLIGGAGVKNLGDATIANIHFENYKAFGTNFN
                     WFASLGYYNGSNANAFWIPAASNFANNLKFNEEDGYAVHVGGRYDFTKALKVGYEFFW
                     GSRYWYTMSRPSINDPLNIRMTRGTAHDVYVIYQLDRYQFLRLSYTNIQNKWGNRGIP
                     LMGAKKEKSRADNIMLMYNVKF"
     gene            complement(8359..8841)
                     /locus_tag="ACJFD7_000472"
     CDS             complement(8359..8841)
                     /locus_tag="ACJFD7_000472"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HGG0859317.1"
                     /translation="MIKTIDTSKVNEYKFALIETEKGTMKLKLFGNEAPQTVCNFATL
                     ANEGFYKDLNFHRVIPNFVIQGGCPHGNGVGGPGYKIICECDDQEHKHERGTLSMAHA
                     GRDTGGSQFFICHSPQAHLDGVHTVFGQIDPKDEESLEVLDSIRQGDKILDIKICDKI
                     "
     gene            complement(8851..9558)
                     /locus_tag="ACJFD7_000473"
     CDS             complement(8851..9558)
                     /locus_tag="ACJFD7_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HGG0859318.1"
                     /translation="MGRAFEYRRASKEARWDKMSKLFPKLAKAIQVAAKEGGTDPDMN
                     PKLRSAIATAKANNMPKDNIDAAIKRASGKDSADIKNIHYEGKAAHGALVIVECMSDN
                     PTRTVANVKAIFSKNGGEVLQNGSLGFMFTRKAVFHLEKFAGDLEELELDLIDTGLEE
                     LEQNEEELVISGDYTAFGELSSAIETKGLVLKKAGLEYIPNNPVSFSEEQLSDIEKLL
                     DKLEDDDDVQAVYTNID"
     gene            9667..10008
                     /locus_tag="ACJFD7_000474"
     CDS             9667..10008
                     /locus_tag="ACJFD7_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HGG0859319.1"
                     /translation="MNIAKKELFVAWFFLIAAIVFEVLGTSFLKMENQILGYIFMALF
                     IAFSYFFMGKAIKKIQVGIAYAVWELLGIILILLVSFIVFKESLTLTQILGIVLSIVG
                     IIMINIGEVKE"
     gene            10008..10316
                     /locus_tag="ACJFD7_000475"
     CDS             10008..10316
                     /locus_tag="ACJFD7_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HGG0859320.1"
                     /translation="MYIFIIVLSALLDIVANLLLKKSDGFKHKIWGLAAIVNAILAFF
                     LLSFSLKYVPLSIAYSTWGAIGIIGTCLGGWILYKEKLNKIGILGIIIVIIAVFLLNY
                     "
     gene            complement(10334..11926)
                     /gene="argS"
                     /locus_tag="ACJFD7_000476"
     CDS             complement(10334..11926)
                     /gene="argS"
                     /locus_tag="ACJFD7_000476"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HGG0859321.1"
                     /translation="MKSIIFNEIKKILECDFALENPKDKNLAHFATPLAFSLAKELKK
                     SPMLIASDLASKFQNHDCFESVEAVNGYLNFRISKTFLNELANQALTNPNDFTKGEKK
                     QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLL
                     GLSILLSVKESILHENVEYPEQYYKGEYIADLAKEAFEKFGKEFFSEENIPSLADWAK
                     DKMLVLIKQNLEQAKIKIDSYVSERSYYDALNATLESLKEHKGIYEQEGKIWLASSQK
                     GDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFL
                     GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCD
                     THLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNL
                     LFEALNLKAILNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSL
                     VALSIKTAFSLMGIEAKNKMEH"
     gene            complement(11938..12177)
                     /locus_tag="ACJFD7_000477"
     CDS             complement(11938..12177)
                     /locus_tag="ACJFD7_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HGG0859322.1"
                     /translation="MGGWSSPSHWLIILLIVVLLFGAKKIPELAKGLGKGIKTFKDEM
                     NNDDEVAKNTQKIEENKNTTNNTNADASIDETKKA"
     gene            complement(12179..12802)
                     /gene="gmk"
                     /locus_tag="ACJFD7_000478"
     CDS             complement(12179..12802)
                     /gene="gmk"
                     /locus_tag="ACJFD7_000478"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004385 - guanylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006163 - purine nucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HGG0859323.1"
                     /translation="MKLQGFVLLISGPSGAGKSTLLKKLFDEFEDELYFSISSTTRKP
                     REGEKNGIHYHFISHEEFQKGIDSDHFLEWARVHENFYGTSLKHTQNALDNGKIVVFD
                     IDVQGFKIARKKMADKIVSVFITTKNKDELKKRLIKRNTDTIIQLEKRLQNASDEMKE
                     LSEYDYLIINDELKQSYEALRAILIAHKFRTKGQNLGQIQNIWNEGE"
     gene            complement(12799..14100)
                     /locus_tag="ACJFD7_000479"
     CDS             complement(12799..14100)
                     /locus_tag="ACJFD7_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859324.1"
                     /translation="MKILLLNENPVVSRLVSLSAKKMSYDFEELNAYSENLGNYDVIV
                     VDSDTPAPLKILKEKCDRLIFLAPRNQNVEDIDAQILQKPFLPTDFLNLLNNKDANKH
                     TSIDLPMLSNDENPYADISLDLDNLNLDDLPDENSLDINSEGMEDLSFDDAQDDNANK
                     TLETQNLEQETIKEQTQEDTQTDLDLTLEDGESEKEDLSQEHTALDTEPSLDELDDKN
                     DEDLEDNKELQANISDFDDLPVVEEQEKEMDFDDLPEDAEFLGQAKDNEESEEVLEEF
                     TPVVEEDVQDEMDDFTSNLSTQDQIKEELAQLDELDYGIDSDNSSKVLEDFKDEPILD
                     DKELGTNEEEVVVPNLNISDFDTLKESDIQEALGEEILEKNEEPIVSDVTKDDNSEEI
                     VNELSQSIAGAITSSIKDDTLKAALKGMNMNININISFKED"
     gene            complement(14157..14924)
                     /gene="fliR"
                     /locus_tag="ACJFD7_000480"
     CDS             complement(14157..14924)
                     /gene="fliR"
                     /locus_tag="ACJFD7_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliR"
                     /protein_id="HGG0859325.1"
                     /translation="MEFVNYLGDKNVVTFMLLLARMSGLIVFFPFFSHNSIPMVIKST
                     IVLFLTMYLYPLARLESLHLDSFFVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAF
                     TMGFTMASILDPSSGTSMPITAQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGF
                     YPHENLMHYLNMGMFNIFIIGFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPI
                     KIALGFVVLIAILLVMMQYFKNLILELFTHMQTLFFS"
     gene            complement(14911..15546)
                     /locus_tag="ACJFD7_000481"
     CDS             complement(14911..15546)
                     /locus_tag="ACJFD7_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0859326.1"
                     /translation="MELLRAENLSHSFDYPLFEGLNLTLNTKDCIAIQGSSGCGKSTL
                     LHILSSLLIPKKGEVFFKGSNLYQMDENERLKIRRYDFGIIFQTHYLFKGFSALENIE
                     LASVLSGQDLDEKILKRLGIDTLLHQKIGKLSGGQQQRVSIARVLCKKPKIIFADEAT
                     GNLDFDNAKNVIELLISYVKENDAALFFVTHDSKLASFCDKIYTINVNGIC"
     gene            complement(15559..16632)
                     /gene="tsf"
                     /locus_tag="ACJFD7_000482"
     CDS             complement(15559..16632)
                     /gene="tsf"
                     /locus_tag="ACJFD7_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HGG0859327.1"
                     /translation="MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREK
                     GLGKAAKKADRLAAEGLVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKDTTAHI
                     QSNSLQSVEELHSSMINGVKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHT
                     NGRVGVVIAAACDSTEVASKSRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALV
                     AELEKENEERRRLKDPNKPEHKIPQFASRKQLSDAILKEAEEKIKEELKAQGKPEKIW
                     DNIIPGKMNSFIADNSQLDSKLTLMGQFYVLDDKKTVEQVIAEKEKEFGGKIKIVEFI
                     CFEVGEGLEKKTEDFAAEVAAQL"
     gene            complement(16632..17423)
                     /gene="rpsB"
                     /locus_tag="ACJFD7_000483"
     CDS             complement(16632..17423)
                     /gene="rpsB"
                     /locus_tag="ACJFD7_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HGG0859328.1"
                     /translation="MVSMRDLLECGVHFGHQTRRWNPKMKKFIFGERKGIYVIDLQKT
                     LRYFRYTYNIVRDAAAEGKTILFVGTKKQAGGAIKEYAEKCGMPYVNHRWLGGMMTNF
                     GTIRQSIRKLEVIEKMEEDGSIKLLTKKEALMLTRKKEKLLAYLGGIRYMKTQPDMIF
                     VIDTVKEKIAVQEANRLRIPVVAPLDTNCDPDLVTYPIPGNDDAIRSVQLFCQEMAEA
                     INEGKALREQDGEALANEEKEITDEEKKEVLDEAMSEEDFGEEQE"
     gene            complement(17539..18702)
                     /locus_tag="ACJFD7_000484"
     CDS             complement(17539..18702)
                     /locus_tag="ACJFD7_000484"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HGG0859329.1"
                     /translation="MLEKQMIKFILSKWNYGNFRIVFWDQEEFHVGNQPAKFSLIFKE
                     KIPFLKLFSDTSLVFAKHYMESKLEIEGDYDEIAKVLYYFSNKRFLKNTEDILSKIAQ
                     KQESKNIKSHYDIGNDFYKLWLDDTMSYSCAYFKEPNNTLYEAQINKIEHTLKKLDLK
                     EGEKLLDIGCGWGWLSIMAAQKYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQ
                     NYQDLEFENYFDKVVSVGMFEHVGKDNLGLYFMKVKQVLKPGGSMLLHSILAMFEGKT
                     NAWIDKYIFPGGYLPSLREVVSAMSEWDFHLLLAESLRMHYAKTLDLWDENFNEVLDK
                     VREKYDEEFIRMWDLYLRSCASAFRVGSVDLFQFLITKEINNNLSLTKDYIYK"
     gene            complement(18830..19954)
                     /locus_tag="ACJFD7_000485"
     CDS             complement(18830..19954)
                     /locus_tag="ACJFD7_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HGG0859330.1"
                     /translation="MREIKIFLVVVVFTALVYWGVEPYAHSVMKPHVAPANFDFAVED
                     TTFAKGIVEAKELALKDAQASGDAKRIESANKELEKAKEELSKVETLWADVAKIDFAK
                     GDAKKGKEFFENNCFACHGVKEDGIAANITDSSMGVIPPDLSAAGAIFDEKFLAALIM
                     HPALALKVDHKFGDAFIMTAYNKDTSGESEEATNANIANVIAYLKDVSVKFEANEDAT
                     IKKDVEAKYAKMENSAQKAALMEKDIKFAKDKATFIEACGRCHDMKYDSFFTPSNQND
                     LKTYLGSVPPDLSMMIRSRGEQYLHDFINNTQKLLPGTAMPRVGLTEAAQAKVVSYID
                     QVGDSKKEERKTTGIYVMIFFVILSIFAIGWKRSVWSKLH"
     gene            complement(19951..21201)
                     /locus_tag="ACJFD7_000486"
     CDS             complement(19951..21201)
                     /locus_tag="ACJFD7_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HGG0859331.1"
                     /translation="MAQIRKANGLVDWLDQRLAVHKLLDVLMVKYWIPKQINFLWAMG
                     VILTTLFAVLFVTGLLLVMYYKPDTALAFDSVNKTIMQEVDYGWLWRHMHGVAASVVF
                     LIIYIHMLTGIYYGSYKKGREMIWVSGMLLFVVFSAEAFSGYMLPWGQMSYWAAQVIT
                     NLFGGIPFIGPELVIWIRGDYAVSDPTLTRFFMLHVCLLPIVIIAIIAFHFYSLRIPH
                     VNNEISEELDFDLEAEKYMAGDTKGSKVIPFWPGFLSKDFMYISFFMIFFFYLVCFKF
                     EFAMDPINFDPANALKTPAHIYPEWYFLWSYEVLRGFFFDIAGIKAFDIGLAAFGIAQ
                     VIFFLLPWLDRSDVVKPAHERPLFFIWFWILLIDLIVLTVYGKLPPTGVNAWVGFYAS
                     IVFLLLLIVVLPVITIMERKGAKQ"
     gene            complement(21203..21706)
                     /gene="petA"
                     /locus_tag="ACJFD7_000487"
     CDS             complement(21203..21706)
                     /gene="petA"
                     /locus_tag="ACJFD7_000487"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045275 - respiratory chain complex III
                     [Evidence IEA];
                     GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HGG0859332.1"
                     /translation="MATSESRRSFMGFAFGSVAAVGGVFSLVAMKKTWDPLPSVKAAG
                     FTTVDLSGMQDGELRTIEWRKKPIFILKKDASMPKDEKRDVVVDNAAYTVVIGLCTHL
                     GCIPAYQPSEQLFKCACHGGEFDTSGKNVFGPPPKPLEIPPFKIDGTKLVLGEEGPEY
                     KKMIAEA"
     gene            complement(21797..23082)
                     /locus_tag="ACJFD7_000488"
                     /pseudo
     CDS             complement(21797..23082)
                     /locus_tag="ACJFD7_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344578.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic transporter"
     gene            complement(23083..24942)
                     /gene="mnmG"
                     /locus_tag="ACJFD7_000489"
     CDS             complement(23083..24942)
                     /gene="mnmG"
                     /locus_tag="ACJFD7_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HGG0859333.1"
                     /translation="MFDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNP
                     AIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRII
                     TRNKLLKLSNLEISQEQASALIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHV
                     GENKLQAGRVGELASVNLGNYLQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVN
                     PKAFSFRSRNFNPTQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIED
                     KINRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQTQMLRSVKGFENAKITRFG
                     YAIEYDYIEPTELKHTLELKKIKNLYCAGQINGTTGYEEAAAQGFMAGINASLSIDMK
                     EPLILRRDEAYIGVLIDDLVIKGTKEPYRMFTSRAEFRLLLREENAILRLGKYGYDLG
                     LLSEQDFTYIQNIANNLQKGLEFLLSKEFTPNNQNNAFLESLGEDKISSIVNLQKIVA
                     RASFDMEKLKKLDPIFETMDHYSLREILNEAKYYHYISMQKAQVEKMKNLSELKIPEN
                     FDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGITPAALDILQIYIKMQKKKA"
     gene            complement(25030..25527)
                     /gene="cetB"
                     /locus_tag="ACJFD7_000490"
     CDS             complement(25030..25527)
                     /gene="cetB"
                     /locus_tag="ACJFD7_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetB"
                     /protein_id="HGG0859334.1"
                     /translation="MSREIFLQEDSLITSKTDLKGRIVYANDDFLKYAGYTMGEVLNK
                     PHNIVRHEEMPKTVFKYLWDYMREGKEIFAYVKNKTKDNNYYWVFANVTPSIDVNNNI
                     IGYYSVRRMPNKSAISTIESLYSDLLRAEQQQGLNKGVEMLKNFCKDADKTYNELIFS
                     LQEAK"
     gene            complement(25545..26924)
                     /gene="cetA"
                     /locus_tag="ACJFD7_000491"
     CDS             complement(25545..26924)
                     /gene="cetA"
                     /locus_tag="ACJFD7_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetA"
                     /protein_id="HGG0859335.1"
                     /translation="MVKNGLLSTIFLSVIGVLGVIFIHIFVGAIIFVLIAVLMIYLLR
                     QHKDEQIMIDKLLVLCRELKEGNFDNRIIYVKTKSKKLAEIADNLNNTIDGLEAYLRE
                     INTSISCSQKGEFYRKALPEGLKGIFAHNIEFINKALANIEVTARSTFKNALSRTLMD
                     LSLGNQNKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEVDSLQSAMGSLMDV
                     VNSSKETVQTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVAD
                     EVRKLAERTQRSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFSQAFKRL
                     EENSSALGVNFGSFAKRLILSVVKIDHILYKSNIYLNLNGAQNFNLESVDPISNLCQD
                     ERAQGVINELSSETELNLAKEFIKDNAKKAIEESSQDYIDQKAYDAIVNDIKSLEQRS
                     AEILAKLKI"
BASE COUNT         9287 a         5032 c         3405 g         9284 t
ORIGIN      
        1 gaactaaaac acattgcaag tgctgctata tgaggactta aagagataaa aggtacaaat
       61 cctgccgcga taggaatgca aagcacatta taaataaaag cccaaaaaag atttagctta
      121 ataataccgc gtgttttttt agcaagttta aaacatttaa aaatcgctga taaatcatct
      181 tttatcaaga taaaatctcc tgttttttta gcaagctcat ttgcctttga aaaactcata
      241 ctcacacttg cagcagataa agccgccgca tcattgatcc catctcctac aaaaagagtt
      301 tttttaaatt tttgaatgat ttgtagtttt tcttcactct taagctgagc gtgaaattcg
      361 tctatttgta attctttggc tattttttct acatttttta catgatcgcc gcttaaaata
      421 aaagttttaa gattttgctt ttttaaattt aacacaagct ctttggctcc atcttttaaa
      481 gcattgctta acaaaacacc gcctaaacac tttttattct tagcaaaata caccctaaca
      541 tattctttaa aagtatcaaa aaagatatca ctttcttttg tgtcaatttc attttcgtgc
      601 aaaaactgtg cattgcctac gagataatta tcattatctt ctttgtattt tataccagaa
      661 cccacaatca ctcttccctc accctttaaa tcaaaaaaat gatctttatg taaagcctta
      721 gctataggat gagagcttaa actttcaatt tgacataatt tatcaaaatc atctttagaa
      781 agattgtgtt taaaaatact caaattttcc tttgttaatg tacccgtttt atcaaaaaaa
      841 gcatacttaa ctaaggctaa tttttctaaa gcagcaggat ttttaataag aatgaaattt
      901 tttgccgcat ttgcacttgc cacaaccaaa gctataggcg ttgcaagacc taaagcacaa
      961 ggacaagaga tcaaaagcac agcacaagag tgtaaaaaag ctgtatttaa atctgctttt
     1021 agcacccaaa aaacaaaaac taaaaaagca aaaaatatta taccccctac aaagtattta
     1081 gaaatttgat ctgctaaatt tgccaaagga cttttgatac ttcctgcttc aaaaactaga
     1141 tttttgattt gttctaaagt actatccatg gcctttttgt ttgctttgat ccttaaagca
     1201 ccatttaaaa ctactgctcc tgcttgaact tcatcgcctt ctttttttaa aacaggcaaa
     1261 aactccccat ttaaaaaact catatcaagc tctgcactcc ctaaaagcac tactccatct
     1321 gcaacaatgc tttctccttc ttttaccaaa agtacatcgc cacttttgac aaaagaactt
     1381 gaaatttctt tgatactttc atcttcaagc aaaatttttg tcttttttgt gtctatattt
     1441 tctaaaattc tttgataatc ttgtgcctta aatttagcct tactttcaag atattttcct
     1501 aaaagcacaa aggaaataat catcattgca ccactaaaat acaaatcttc ttctttgaaa
     1561 atttgcaaat acaccaaaaa agaatacaca aaagcactca aagtccccaa agctacaagg
     1621 gtattcatat ctaaattttt gcttttaaag cctaaaaaag catgagaaaa aaagtctctc
     1681 ccacaataaa atatcccaaa aaaactcaaa gccatttgga tattttgaga aaaagaactt
     1741 ttaacaaaca tttcaaaata cataataatc acactcaaaa ctatacttaa gagcaaattt
     1801 tttcttaatt ctaagtgttt ttttgccttg tatgcgttca agctttgttc atcttctaaa
     1861 atttcaaagc ctaaattttg aatttttgcg atgatatcct tgcgtttttc ttgatcttca
     1921 agtaaaaaaa ccccgctaga attcacataa gaaacactag catctttaac accatcaatt
     1981 tttttacaag ctctttctat agcattagaa caattaacgc aagtcatttt gcctattttt
     2041 atacgcaatt cttccattat aaacgctcta cgatctcaaa acctaaatct tgaaattctt
     2101 ttgtaaaatt tgatacttga ttttcttcta aatttaaact taaaattttt tgctccaaat
     2161 ccacttctat atttccaaat tcatcttcaa gagaattttt gatcaaattt acacaattca
     2221 tgcaattaac attttttact ttaaatttca ttttcactcc ttataggttg tatggtaatg
     2281 tgcccgattt caaattcatg caataactta tgagataaat cctgagatag tttttcaaat
     2341 tcctttagat tgcaaactct tacttttaaa tgcatagagg ctactagcat tttattagtg
     2401 atttgagtaa tatgcaaatc cactacctca tccacactag gatttaaaag caaaacttgt
     2461 cttacttttt ctatatccac aggagaactt tcaagcaaga cattagcgct ttgtttaagc
     2521 aagataatcg cccatcttaa aagcaagatt gataatacaa tagctaaaat cgtatctata
     2581 taaacaatac cactaaaata caccacaatc ccacctataa taaccgctaa agaacccaat
     2641 aaatcactca tcatatgcaa aaaagcggac ttcatattga cattttctaa atttgcaccc
     2701 ttaaacatca tcaaagcatt aatcccattt accaaaaagc ccaaaatagc tacaattatc
     2761 atggttttag cgtcaatttc ttttggattg ataaattttt ctatagcctc ataaatgata
     2821 aataaagccg ataaaataat ggttaaagca ttaataaaag ccactaaaac ttcaagacga
     2881 aaatacccaa aggtcttttg atgatcttgc catttttcta cagctataat ggctaaaaaa
     2941 ctaagagcta aggcaaaaac atcagaaaac atatgcaaag tatcgcttaa aagtgccaaa
     3001 gaatttgaaa ggattgaata aataaattgc acaagcatca tagaaaaagt cattaaaaga
     3061 gaaattttta aaatcttttt atccatactc cttgcatcgg catgggaatg atgatgttca
     3121 tgagaatgtt cttcgtgatt atgatgacaa gatttgttag ctaaaggctc gtgtgataaa
     3181 aatttataca tcttatatcc tttttgcttg acattttaag atattaagct aaaaaggata
     3241 taaatatttg ttatttttat aaaaattaaa agtcaaaaag ctcgcctagc caactttctt
     3301 tctttttctt tttatagtaa tcattgtgct gatgataagc tgagtcatta tatcttgact
     3361 cttgtcttgg agcttggtta aaatttgctg tattagggac actgcgttct atgattttgt
     3421 caagttctcc acgatcaagc caaacgccac gacactttgg acaataatca atctcaactc
     3481 cactcctatc actcataacc aaatctacat tacaaactgg acataacata caatactttt
     3541 ttttaaattt ttgatttaaa attataaaaa gaaatattaa acaaatttac aacaagtttt
     3601 aatgtttttt tgcatgtcta gtcatcataa aactttgttc aaaaaatata agcaaggtaa
     3661 cactcactcc tatagctaga gccaaagtca cagaaacagt tgtaaaaaaa taatcaaaaa
     3721 attgaaccaa aaattcagac ttagccttca aatcatcact gcgtataaaa gaaataagat
     3781 acaaaatcgc tttataagca taaattccag gtatcatagg aataagagca gggaaagcga
     3841 taatttcagc aggagttttg atgatttttg ctaaaacaat tcctaaacat cctatgcaaa
     3901 atgaagcaac aaaagttgca attgctaaag tttgaaaatg aaaatattcc accaaggtaa
     3961 aacgaagccc atgtgcaatt gccgctaaaa gagcagataa aataagggtt tttaaaggtg
     4021 gattacaagc ataagcaaac ccaaatcccg ccacagcagc aaaaaacata tctcttaaaa
     4081 taaattcaat catcttaaaa tcccaaaatc cgaaatacta agcgtcatgt aaattccaag
     4141 tgctatacaa caaatcaaaa tagccacgct gataatacgg ctaagcccca ttaaaatatg
     4201 atcttttaat atatcaatca cagaatttat aaaaaatact cctggtataa gatacaagat
     4261 actagaaccc aaagccacat cagaagtatt ggtatatccc atatccagtc caaaaaatac
     4321 aaaccacgat gagataaaag aacaaaggat gtattgaatt cttaaatcaa tctttgcttt
     4381 agttaaaata tatcttaata acaatcccac aaaagttgca aaaaatacta aatttccagc
     4441 accaaaatca ccaccaaaaa gcctacaaaa agctgaattt gccatagaaa caaataaaag
     4501 attaagcaaa taagaatgct ttttttgttg agaaatttgc tcaaaaacga cttttgcttt
     4561 ttcaagatcg tatttgtgat catatatagc ccagcttaaa gcacttaaat caaaaataag
     4621 cttaaaatta acatgggcat gatgattggg tataacataa gttctttgaa tggagttatc
     4681 atccatatct acaacattta aagtaatatg atgaaaaaag aaattgatat ttatctcata
     4741 gccataaacc tcagctattc ttcctacgca ttttgccacc ctagctgtat aagttccagc
     4801 acctagcaaa gttttagtat atacgattaa aaaattagtt aatctttgta tatcaggttt
     4861 ttccatattt taataatctt tgattgaatt tgttataatt atagcaaatt ttaaaataaa
     4921 taaggagaaa aaatggcaaa aatcggtata gttggtttag gttatgtagg agctgctagt
     4981 gcttatagca tagttactca aggaatttgt tcagaacttt acttatatga tataaaacaa
     5041 gatttagctc tagctcatgc aagagatttg gaagatatgt cagccattca tttttcttat
     5101 acaaaaattt ttcatgtgcc aaatttagaa aatttagctt cttgcgatat tatcatttta
     5161 gcttttagaa aagagagctt aaaagaatta cctagtcgct tagtagaact tcaaaacaat
     5221 atcctcgaac ttaaagacat tgtcttaacc ttaaaaaatg ctaattttaa aggcaaatac
     5281 attgtcgcaa caaatccaaa tgacaccata acttactaca ctcaagtatt aagccaatta
     5341 cctaaaaatc atgtttttgg tagtggaaca aatttagata gttcaagact taagaaattt
     5401 ttagccaaag atttaaacat aaattcaaaa gatatttttg cttgtatgat tggcgaacat
     5461 ggagattctc agtttgcagc actttctaat gcaagcattt taggacaaaa tttattagat
     5521 ttttacaagc aaagattagg caaagattta gacatacaag aactcgaaaa agccgtgatt
     5581 agcgagggat atttcatcta tgaacgcaaa ggaaggacag aatttggcat aggaacttct
     5641 tgtgcaaatt tagccaaagc catcctagaa gatagaaaaa gtttacatcc tgtaagtgtg
     5701 gtttttgatg atatagcttt ttcaatgccc gctatcatag gaaaagatgg tatagaaaag
     5761 gtttttgaat taaaattcaa tgaaaaagaa aaaacaaaat tagaaaattc aaaacaacaa
     5821 atcaaaaacg ccatacaaag cgtaaaagat aaaatttaag cctttttaaa aggctttttg
     5881 attttgatat aaattaaact tgctaaaatc acaaaaacaa ttataatgat taaaatttga
     5941 gttaaataag ttttaatcaa ctcttcattt tgtcctatat aataacccaa aaatacaagt
     6001 atagccaccc aaatagcact accaagtgca gtaaaaagta taaaatttac aagtttcatt
     6061 tttaccaaac ctgcaggcat agagatgtac tgacgaatcc ctggtaaaag acgacaagta
     6121 aaggttgaaa attccccgtg tttgttgaaa aattcttcaa atttagcaaa tttggcttcg
     6181 tttataccaa aatacttacc ccattttaat acaaaatttt taccccaaaa aaagcaaata
     6241 taataattaa tcaaagcccc taaaacagaa cctaaagtcc cactaagtat acaaagagtg
     6301 atatcaagtt cgcctttatg tgccaaatat ccagcaggta tcataacaac ttcacttgga
     6361 aaaggtataa aacaactctc taaggtcatt aagataataa tacccaaata cccccaagca
     6421 ctagccgtct caacaataag agaaatgatt tcttgcatat tagccttatt tgaagaaaat
     6481 tttaaaaaat tgtagcttaa aagattaaac agtaaaaagc ggttttacac cgcttttttt
     6541 atttacctgc aaccgaaact tgatttggat tgtccgctgc acgagcgatc atgcactctt
     6601 ttaaaacggc agcatcagct ggatcgctaa cttttttatt aatccagcgt tcaacttgtt
     6661 tcattgtttt tgactctggc tctggagctt cgtattttgc catcaaactt gcacaatcag
     6721 ccaaagcaat gataggtaat aaacttgcaa aaagtatttt tctcatcttt tgctccttag
     6781 aattttacat tatacattaa catgatatta tcagctcttg atttttcttt tttagctccc
     6841 attaatggaa ttccacgatt tccccatttg ttttggatat tggtatagct taagcgtaag
     6901 aattgatatc tatcaagttg ataaatcaca taaacatcat gagctgttcc tcttgtcatt
     6961 cttatattaa gcggatcatt gatacttgga cggctcatag tataccagta tctacttccc
     7021 cagaaaaact cataacctac ttttaaagcc ttggtaaaat catagcgtcc gcctacatgc
     7081 acagcataac catcttcttc attgaatttt aaattatttg cgaaattact ggcagcaggt
     7141 atccagaaag cattagcatt gcttccattg tagtatccta aagaagcaaa ccaattaaaa
     7201 tttgttccaa aagctttgta gttttcaaaa tggatatttg ctatagtggc atcaccaaga
     7261 tttttaacac cggcaccacc aattaaatta ttaattattg ctccaccatc aataggaagt
     7321 gaaaagtcgc taatataagc tacattaaga agtaataagt tatcccccat accctctata
     7381 ggaagttctc cttctactgc agcatagtaa agatttgcat cagcatcttt ttgatcgctc
     7441 atccagtctc ttaccttacc ctcttcatcc cattgataag ttttaccata agctgcacgg
     7501 atggctacct tatgatcttg taaactttca ggtttataag tgattactgc tgcatcacct
     7561 agagcattaa tcgctaaggc tggataagtg gattgtctta aagcattgtt tctaagatta
     7621 cttcctgggc catcggttcc tggctgtctt cctacggttg caatccactc aggtgtgata
     7681 tagtagtcaa gataagctct atctacataa agtacaggcc cacttgttct tgtgtttctt
     7741 cctgcatcta agtcaagtgg acttccactc caacccattt gagaccaatt tttagccata
     7801 gataaacgac catagaattt ggttttatca ttaatatcag cattcatatt taaatgaagc
     7861 tcattcatcc atttgttatt agcactataa tcttgtccgc taactttata gtttgtattt
     7921 gaaactgctg ttgaaaactc aagtccaaat ttaaccttgc tcaaagcagc ttggaattct
     7981 gtttcatcgg ctctatcatt aagatcagca agttcagctt ttacagcttc attttgctta
     8041 gcttgagctt ccctttcttt tctgatttgt gcaagttcag cttgaatttg tgcaagctgt
     8101 ttttgaagct tggttatctc atcatctgta tttttagcaa aaagtgaaga tgaaagaaga
     8161 caagcactta aaataagtga aaacttagtt ttcataatca taactccttg taattttgtt
     8221 acatttagca aattaaaatt gtgattatag aaaaaaaagt ttaaaaaaaa attatacatt
     8281 aatcattttt agctagtcaa acttatgact agctttgtaa atattgtagt tttaaaaaag
     8341 ttttaaaatt ttaaattttt aaattttatc gcaaattttt atgtctaaaa ttttatctcc
     8401 ttggcgtata gagtctaaaa cttctaaact ttcttcatct tttggatcaa tttgcccaaa
     8461 aacagtatga accccatcta aatgagcttg agggctgtga caaatgaaaa attgagaacc
     8521 acccgtatcg cgtcctgcgt gtgccataga taaggttcca cgctcatgtt tatgctcttg
     8581 atcatcacat tcgcaaatga ttttatatcc aggcccacct acaccattgc cgtgtggaca
     8641 acctccctgt atgacaaaat ttgggatcac acgatgaaaa tttaaatctt tataaaatcc
     8701 ttcattagcc aaagtagcaa aattacaaac cgtttgtgga gcctcattac caaaaagttt
     8761 taatttcatt gtgccttttt cagtttctat aagagcaaat ttgtattcat ttactttgct
     8821 tgtgtcgatt gtttttatca ttatttctcc ttaatctata tttgtataaa cagcttgaac
     8881 atcatcatca tcttctaact tatctaaaag tttttctata tcgctaagct gttcttcgct
     8941 aaagcttaca ggattgtttg gtatatactc aagtcctgct tttttaagaa ctaaaccctt
     9001 agtctctata gcagaactta gctcaccaaa ggcagtataa tcaccgctaa ttactaactc
     9061 ttcttcattt tgttctaatt cttcaagccc tgtatcgatc aaatcaagtt ctaattcttc
     9121 taaatctcct gcaaattttt caagatgaaa aaccgctttt ctagtaaaca taaagcctaa
     9181 agatccattt tgtaaaactt ctccaccatt tttgctaaaa atggctttaa cattagccac
     9241 ggtgcgcgta gggttatcgc tcatacattc aactataacc aaagctccat gtgcagcttt
     9301 tccttcataa tgaatgtttt taatatctgc gctatctttt ccactcgcac gcttaatagc
     9361 cgcatctata ttatcttttg gcatattatt tgcttttgct gtggctatag cacttcttaa
     9421 ttttggattc atatcaggat cagtgccacc ttctttagca gctacttgta tggctttagc
     9481 aagcttagga aaaagcttac tcattttatc ccatctagcc tctttagaag ctcttcggta
     9541 ttcaaacgct cgtcccataa attctcactt tctttaaaga tttttaaact taaaagtata
     9601 aactaaaaag gctaattaaa gctttaaatg gtatgatttt accatttatt tttagggaga
     9661 agctttttga atatcgcaaa aaaagaactt tttgttgctt ggtttttctt gattgctgct
     9721 attgtatttg aagttttagg tactagtttt ttaaaaatgg aaaatcaaat tttaggctat
     9781 atatttatgg ctttatttat agctttttct tattttttta tgggcaaggc gattaaaaaa
     9841 attcaagtag gcatagccta tgctgtatgg gaacttttag ggattattct tatactttta
     9901 gtttctttta tagtttttaa agagagttta accttaactc aaattttagg cattgttctt
     9961 tctatcgttg gaattatcat gattaatata ggcgaggtta aagaataatg tatattttta
    10021 ttattgttct atcggcattg ttagatatcg tagcaaattt attgctaaaa aaatcagatg
    10081 gttttaagca taaaatttgg ggcttggctg cgattgtcaa tgctatactt gctttttttc
    10141 tactttcttt ttctttaaaa tatgttcctt taagcatagc ttactcaact tggggtgcta
    10201 taggcatcat aggaacttgt cttggtggat ggattttata taaagaaaaa ttaaacaaaa
    10261 taggaatttt aggtatcatt atcgtaataa tagcagtatt tttgctaaat tattaaaaca
    10321 gcaaaatgct gttttaatgt tccattttgt ttttcgcttc aatgcccatt aaagaaaatg
    10381 cggttttaat actaagagca accaaagaaa ataatttaag caaatcattt tcatttgcag
    10441 agcctacaac tttattttca ttgtagaatt tatgaaaatt tgcagctaaa tttttaagat
    10501 aatcaggaat tttttgcaaa gctctagcct caaaagcatc atttaaaata gcctttaaat
    10561 tcaaagcttc aaagagtaaa tttacaccat cttgatttaa actttgtaaa tcagctttca
    10621 ttacatcatc gattttttta ccagctttag caaatacttg atgaattcta gcgtgtgcat
    10681 agttgatata atacacagga ttagagctat cttctttttg caaatcacta atatcaaatt
    10741 ccaaatgcgt atcgcatttt ttgctcaaaa agatataacg caaagcatca cttcctatct
    10801 catcaaccac atcgctcatc aagataaaat ttcctgctct tttactcatt ttataaggtt
    10861 ctccatcttt aagtagggaa accatttgtg ctaaaataat ctcaagatta ttagagtcaa
    10921 atcccaaaaa ttccatcgca gctttcattc tagggatata accatgatga tctgctcccc
    10981 aaatattaat acactttcca taaccacgac tcattttatc tttatgataa acaatatctg
    11041 ctgccaaata agtcccgcgt ccatcttcac ggataattac cctatctttt tcatcgcctt
    11101 tttgcgaaga agcaagccaa attttacctt cttgctcgta aattccttta tgctctttta
    11161 aagattctaa agttgcattt aaagcatcat aatacgatct ttcgcttaca tagctgtcaa
    11221 ttttaatctt tgcttgttct aaattttgtt taatcaaaac aagcatttta tcttttgccc
    11281 aatcagccaa actagggata ttttcttcgc taaaaaattc tttaccaaat ttttcaaaag
    11341 cttcttttgc taaatccgct atatactcgc ctttgtaata ttgctctgga tattcaacat
    11401 tttcatgaag tatactttct ttcacactta gtaaaataga aagccctagt aaataaattt
    11461 gattacccgc atcattgaca tagtattctg tattaaattt atagcccaaa tgtcttgcaa
    11521 gtcttgttaa ggtgtctcca aaaacagcgc ctcttgcatg tcctatgtgt aaaggcccag
    11581 taggatttgc actcacatat tcaagcaaaa aactttcttg ttttttttct cctttagtaa
    11641 aatcatttgg atttgttaaa gcctgatttg caagttcatt taaaaaagtt ttggaaattc
    11701 taaaatttaa atacccattt acagcttcaa ctgattcaaa acaatcatga ttttgaaatt
    11761 tgctcgctaa gtcgctagcg atcaacatag gggatttttt taattcctta gccagtgaaa
    11821 aagccaaagg ggtagcaaaa tgtgctaaat ttttatcctt tggattttca agtgcaaaat
    11881 cacactctaa aatcttttta atttcattaa aaataatact tttcaaaaga ctaaacctta
    11941 agcttttttt gtttcgtcta tacttgcatc agcatttgta ttattagttg tgtttttatt
    12001 ttcttctatt ttttgagtat tttttgctac ttcatcatca ttattcattt catctttaaa
    12061 agttttaata cctttaccta aaccctttgc aagttctgga attttttttg ctccaaaaag
    12121 caatacaaca atcaataaaa taatcaacca atgacttgga cttgaccaac cacccatttt
    12181 attctccttc attccaaata ttttgaattt gccctagatt ctgccctttg gttctaaatt
    12241 tatgggcgat taaaatcgct cgcaatgctt cataactttg ctttaactca tcgttaatga
    12301 taagataatc atactcgcta agctctttca tttcatcact agcgttttgt aatctttttt
    12361 ctagttgtat tattgtatca gtatttcgct taataagtct tttttttaac tcatctttat
    12421 tttttgtagt aataaaaaca gaaacaatct tatcagccat tttttttctg gctattttaa
    12481 atccttgcac atcaatatca aaaacaacta tttttccatt atctaaagca ttttgagtgt
    12541 gctttaaaga agtaccataa aaattttcat gcactctagc ccattctaaa aaatgatcac
    12601 tatctatacc tttttgaaat tcttcatggg atataaaatg ataatgtatt ccattttttt
    12661 caccctctct tggtttgcga gttgttgaag aaatagaaaa ataaagctca tcttcaaatt
    12721 catcaaaaag tttttttaaa agagttgatt ttccagcacc actaggacct gaaatcaaca
    12781 aaacaaaacc ttgcaatttc aatcctcttt aaaactaatg tttatattta tattcatatt
    12841 cataccctta agagcagctt ttaaggtatc atctttaata cttgaagtga tcgctcctgc
    12901 tatgctttgg ctaagctcat taactatctc ttcgctatta tcatctttag ttacatcact
    12961 tactataggc tcttcatttt tttctaagat ttcctctcca agagcttctt gtatatcact
    13021 ttctttcaat gtatcaaaat cacttatatt taaatttggc acaaccactt cctcttcatt
    13081 tgttcctaat tctttatcgt ctaaaattgg ttcatcttta aaatcttcta agaccttgct
    13141 actattgtca ctatcaatac cataatcaag ctcatcaagt tgagctagtt cttctttgat
    13201 ttgatcttga gtactcaaat ttgaagtaaa atcatccatt tcatcttgaa catcttcttc
    13261 cacaacagga gtaaactcct ctaaaacttc ctctgattct tcattatctt ttgcttgacc
    13321 taaaaattca gcatcctcag gaagatcatc aaaatccatt tctttttctt gctcttcaac
    13381 cacaggaaga tcatcaaagt cgcttatatt agcttgtaat tctttgttat cttctaaatc
    13441 ttcatcattt ttatcatcta gctcatctaa actaggctca gtatccaaag ctgtatgttc
    13501 ttggcttaag tcttcttttt cgctttcacc atcttctaaa gttaaatcta aatcagtttg
    13561 agtgtcttct tgagtctgtt ctttaattgt ttcttgttct aaattttgag tttctaaagt
    13621 tttgtttgca ttatcatctt gagcatcatc aaaactcaaa tcttccattc cctctgaatt
    13681 tatatctaaa gaattttcat caggcaaatc atctaaattt aaattatcta aatccaagct
    13741 tatatcagca taaggatttt catcattgct taacattggc aaatcaatag atgtatgctt
    13801 gttcgcatct ttattattaa gcaaatttaa aaaatctgta ggtaaaaaag gtttttgtaa
    13861 aatttgcgca tctatatctt ctacattttg atttcgcggg gctaaaaaaa tcaatctatc
    13921 gcatttttct ttaagaattt ttaaaggtgc tggagtatca ctatctacaa caatcacatc
    13981 ataattaccc aaattttcac tataagcatt aagttcttca aaatcataag acattttttt
    14041 agcactaagg cttacaagtc ttgaaactac agggttttca tttaaaagta aaattttcat
    14101 cactttaatc cttaaaaaat aatcgctatt ttacgataat ttcatttatc ctttccttag
    14161 gagaaaaaaa gagtttgcat atgagtaaaa agttctaaaa ttaaattttt aaaatattgc
    14221 atcataacta gtaaaatagc aatcaaaact acaaaaccta gagctatctt tataggatag
    14281 ccaataacta aaagattaaa ttgtggcatt gttttcatca aaagtccaaa aataacatcg
    14341 gctaaaagtg aaattccaag tataggaaag ctcatagtaa aacctatgat gaaaatatta
    14401 aacataccca tatttaaata atgcattaaa ttctcatgcg gataaaatcc acctaaacta
    14461 atataaccca aagaatgact taaaaacaaa agcattaaat gatggccatc aaaagcaaga
    14521 aaaaacatca aagcaagtaa atttaaaatt tgtgccgtaa taggcatact cgttccagaa
    14581 cttggatcta atatacttgc catagtaaat cccatagtaa aagcaatctg ctcacctgcc
    14641 atcataataa tagcaaaaat aatttgaagc attaatcctg ctatcattcc aaaaatcact
    14701 tcactaataa gctgtaaaac aaaaaaacta tctaaatgca aagattctaa tctagccaaa
    14761 ggatataaat acatagtcaa aaataaaact atagtacttt ttattaccat aggaatagaa
    14821 ttatgtgaaa aaaaaggaaa aaaaactata agaccactca ttctagcaag aagcaacata
    14881 aaagttacaa catttttatc gcctaaataa ttaacaaatt ccattgacgt ttatagtata
    14941 aattttatca caaaaacttg cgagcttact atcgtgagtt acaaaaaata aagccgcatc
    15001 attttcttta acataagaaa ttaaaagttc gataacattt ttagcattat caaaatccaa
    15061 atttccagtt gcttcatcag caaaaataat ctttggtttt ttacaaagca cacgtgcgat
    15121 actcacacgc tgttgttgtc cgccgctaag ttttcctatt ttttgatgca aaagtgtatc
    15181 aatacctaac ctttttaaaa ttttctcatc taaatcttga cccgataaaa cactagcaag
    15241 ttcgatattt tctaaagctg aaaaaccttt aaaaagataa tgtgtctgaa aaataatacc
    15301 aaaatcatag cggcgaattt ttaatctttc gttttcatcc atctgataaa gattagaacc
    15361 tttaaaaaaa acttcacctt tttttggaat taataaagaa gaaagtatat gcaaaagagt
    15421 agatttacca caaccgctac tcccttgaat agcaatgcaa tctttagtat ttaaagtaag
    15481 atttaaaccc tcaaaaagcg gataatcaaa actatggctt aaattttccg ctcttaagag
    15541 ttccattttt aaccgttttt aaagttgtgc agcaacttca gccgcaaaat cttcagtttt
    15601 cttttctaaa ccttcaccaa cttcaaagca aataaattct acaattttaa tttttccacc
    15661 aaattctttt tctttttcgg caattacttg ttctacagtt tttttgtcat ccagtacata
    15721 aaactgaccc attaaagtaa gtttgctatc gagttgagaa ttatcggcta taaagctatt
    15781 cattttacct ggaatgatat tatcccaaat tttttcaggt ttaccttgag ctttaagttc
    15841 ttctttgatt ttttcttcag cttcttttaa aattgcatcg cttaattgtt tgcgacttgc
    15901 aaattgagga attttatgtt caggtttatt tggatctttc agtctgcgtc tttcttcatt
    15961 ttctttttca agttcagcaa ccaaagcttt gtattcattt tcaacaaaag tcatatccaa
    16021 atcttcataa cttaaataac ttggtctcat tgctgcaata tgcatacaaa tttgtcttaa
    16081 caaatctctt gattttgaag ccacttcagt gctatcacaa gctgcagcga tcacaacgcc
    16141 cacacggcca tttgtatgga tataaccatt tacaacgccg ttagcacctg cttttaaagt
    16201 tgcaaatctt cttacaacta agttttctcc tatagttgca atttgacttt ttaaatattc
    16261 ttcaaatttt acaccattaa tcatacttga gtgaagctct tccacacttt gcaagctatt
    16321 gctttgaata tgagctgtag tatcttttgt taaagcgata aactgatcat tttttgccac
    16381 aaaatctgtt tcggaattaa tctcacttac agttgcgctt gtaaaatcat cacttacttt
    16441 tacacttact aaaccttctg cagcaagtct atctgctttt ttagcagcct tacctaaacc
    16501 tttttctctt aaaagttgta ctgctttatc aaaatctcca ttagtttcac tcaaagcatt
    16561 tttacaatcc atcatccccg cgcctgtact ttcgcggagt tcttttacca ttgcagcagt
    16621 aatttcagcc attattcttg ctcctcaccg aagtcttctt cgctcatcgc ttcatctaaa
    16681 acttcttttt tctcttcatc ggtgatttct ttttcttcat ttgctaaagc ttcgccatct
    16741 tgttctctta aagcttttcc ttcattaatc gcttcagcca tttcttggca gaaaagttgc
    16801 actgaacgaa ttgcatcatc atttcctgga ataggataag ttaccaagtc aggatcgcag
    16861 tttgtatcta gtggagctac aacaggaatt cttaatctat ttgcttcttg aacagcaatt
    16921 ttttctttta ctgtgtcaat aacaaaaatc atatcaggtt gagttttcat ataacgaatt
    16981 ccacctaaat aagctaataa tttttctttt tttcttgtaa gcattaaagc ttctttttta
    17041 gttaaaagtt taatacttcc atcttcttcc attttttcaa ttacttctaa ttttctaatt
    17101 gattggcgaa tggtaccaaa atttgtcatc ataccgccaa gccatctatg atttacataa
    17161 ggcataccgc atttttcagc gtattcttta atcgctccac ctgcttgttt ttttgtcccg
    17221 acaaaaagta tagtttttcc ttcggcagca gcgtcacgaa cgatattata ggtatatcta
    17281 aaatatctta aagttttttg taaatcaatt acataaatac cttttctctc gccaaaaatg
    17341 aattttttca tctttggatt ccagcgtctt gtttggtgtc caaaatgcac accgcattct
    17401 aataaatctc tcatactaac catgagtttc tccttataaa tttagcttta ttcctccaca
    17461 tcccttaatt tacacaagct aaaaaggatt gatgcgtgtg aaatgaagct aagattttat
    17521 caaatttaag tttagttttt acttatatat atagtccttg gtaagactta gattattatt
    17581 gatttctttt gtgattaaaa attgaaacaa atccacgctt ccaacacgaa aagcagaggc
    17641 acaagaacga aggtacaaat cccacattct tataaattct tcatcatatt tttcccttac
    17701 cttatccaat acttcgttaa aattttcatc ccataaatct aaagtttttg catagtgcat
    17761 tcttaaactt tctgctaaaa gaagatgaaa atcccactca ctcatagcac ttacaacctc
    17821 tcttaaagaa ggtaaatatc ctcctggaaa aatatattta tctatccaag catttgtttt
    17881 tccttcaaac atggctaaaa tagaatgtaa aagcatagaa cctccaggtt ttaacacttg
    17941 ttttactttc atgaaataaa gtcctaaatt atctttgcct acatgttcaa acatacccac
    18001 agaaacaact ttatcaaaat aattttcaaa ttctaaatct tgataatttt gaagtcttat
    18061 ttctatttta tcttcaagac caagttcttt tactctttcc ttagcttttt tacactgctc
    18121 ctctgaaata gtaattccaa caaccttaac tccatacttt tgagccgcca taatagaaag
    18181 ccaaccccag ccacaaccta tatctaaaag cttttctcct tcttttaaat caagtttttt
    18241 aagagtatgt tctattttgt taatttgagc ttcataaaga gtattattag gctctttaaa
    18301 ataagcgcaa gaatagctca tagtatcatc aagccaaagc ttataaaaat cattacctat
    18361 atcataatga cttttgatat ttttactttc ctgtttttgg gctattttac tcaagatatc
    18421 ctctgtattt tttaaaaaac gcttatttga aaaataatac aaaactttag ctatttcatc
    18481 ataatcacct tctatttcta gtttagactc catataatgt tttgcaaaaa ctaaactcgt
    18541 atcactaaat aattttaaaa aaggtatttt ttctttgaaa attaaagaaa atttagcagg
    18601 ctgattaccc acatgaaatt cttcttgatc ccaaaataca attctaaaat ttccataatt
    18661 ccattttgaa agaataaatt taatcatttg tttttcaagc atgacatact ccaactaata
    18721 aaaattatta tttgatagta tctcttaatt atgtttaaaa tttgataaaa ttgaagaaaa
    18781 gatagaattt ttgccacaga tataaaatag tggcaaaaat tttataatat taatgtaatt
    18841 tagaccaaac agaacgcttc caacctatag caaaaatact taaaattaca aagaatatca
    18901 ttacataaat tcctgtagtt tttctttctt cttttttgct atcacccact tgatcaatat
    18961 aagatacaac cttagcctgt gcagcttctg ttaaacctac ccttggcata gcggttcctg
    19021 gaagaagttt ttgagtatta ttaataaaat catgtaaata ttgctcacca cgagatctta
    19081 tcatcataga aagatcaggt ggaacagaac ctaaataagt ttttaaatca ttttgatttg
    19141 atggagtaaa aaagctatcg tatttcatat catgacaacg tccgcaagcc tcaataaaag
    19201 ttgctttatc tttagcaaat tttatatctt tttccattaa agctgctttt tgagcactat
    19261 tttccatttt agcatatttt gcctcaacat ctttcttaat agtagcatct tcattggctt
    19321 caaatttaac actcacatct ttaagataag caattacatt ggctatattt gcatttgtag
    19381 cttcttcact ttctcctgaa gtatctttat tgtaagctgt cataataaaa gcatcaccaa
    19441 atttatgatc tacttttaaa gcaagcgcag gatgcataat caaagctgct aaaaattttt
    19501 catcaaaaat agcaccagct gcactaagat caggcggtat tactcccata gaagaatcag
    19561 taatattagc tgctattcca tcttctttta caccatgaca tgcaaaacag ttattttcaa
    19621 aaaattcttt accttttttt gcatcaccct tagcaaaatc gatctttgca acatctgccc
    19681 aaagtgtttc aaccttgctt aattcttctt ttgctttttc aagttctttg tttgcactct
    19741 ctattctttt agcatctcct gaagcttgtg catcttttag agctaattct ttagcttcaa
    19801 ctataccttt tgcaaaagta gtatcttcaa cagcaaaatc aaaatttgca ggagcaacat
    19861 gaggcttcat cactgaatga gcataaggct ctacccccca atatacaagt gcagtaaaaa
    19921 ctactacaac taaaaatatt tttatttctc tcattgttta gctccttttc tctccataat
    19981 agtaataacc ggtaaaacta caataagtaa aagtaaaaat actatagaag cgtaaaatcc
    20041 tacccaagca tttacacctg ttggaggtaa ttttccataa acagttaaaa caattaaatc
    20101 aataagcaat atccaaaacc aaatgaaaaa taaaggtctt tcatgagctg gttttaccac
    20161 atcacttcta tcaagccaag gaagtaagaa gaaaatcact tgagcaatac caaatgcagc
    20221 caaacctata tcaaaagctt taatacctgc aatatcaaag aaaaatcctc ttaaaacttc
    20281 ataactccat aagaaatacc actcaggata aatatgagct ggtgttttaa gcgcattagc
    20341 tggatcaaaa ttaattggat ccattgcaaa ttcaaattta aaacagacca aataaaagaa
    20401 gaaaatcata aaaaagctta tatacataaa atcttttgat aaaaatcctg gccaaaaagg
    20461 aatcacttta gaaccctttg tgtcacctgc catgtatttt tcagcctcta aatcaaagtc
    20521 aagttcttca gaaatttcat tattaacatg aggaattctt aaagaataga agtgaaatgc
    20581 tataatagca atgataacta taggaagcaa gcacacatga agcataaaaa atcttgttaa
    20641 agttggatca gaaaccgcat aatctccacg aatccaaatc acaagttcag ggccaataaa
    20701 tggtatccct ccaaaaagat tagtgattac ttgagctgcc caataactca tttgtcccca
    20761 aggaagcata tacccgctaa aagcttcagc agaaaataca acaaacaaaa gcataccgct
    20821 aacccaaatc atctcacgac cttttttata agaaccgtaa taaattcctg ttagcatatg
    20881 tatgtatata atcaaaaata caacagaagc ggcaacacca tgcatgtgac gccaaagcca
    20941 tccatagtcc acctcttgca taatagtctt attcacacta tcaaaagcaa gtgcagtatc
    21001 tggtttataa tacatcacaa gtaaaagtcc tgtaacaaaa agcactgcaa aaagagtggt
    21061 taaaataacc cccattgccc aaagaaagtt aatttgcttt ggtatccaat actttaccat
    21121 taaaacatca agcagtttat gtaccgcaag tctttgatca agccaatcta caagaccatt
    21181 agcttttcta atttgtgcca tcttaagcct ccgctatcat ttttttatat tcaggaccct
    21241 cttcacctaa aacaagcttg gttccatcaa ttttaaaagg aggaatttca agaggctttg
    21301 gaggaggtcc aaagacattt tttccacttg tgtcaaattc tccaccatga caggcgcatt
    21361 taaacaattg ctcacttggt tggtaagcag gtatacaacc caaatgcgta caaagtccta
    21421 taaccacagt ataagctgcg ttatctacca caacatcacg tttttcatct tttggcatac
    21481 tcgcatcttt ttttaatata aaaataggct ttttacgcca ttctatagtt ctaagctctc
    21541 catcttgcat tcctgataaa tctactgtag taaaacctgc agctttaaca cttggaagcg
    21601 gatcccaagt ttttttcatc gcaacaagtg agaaaacacc gcctacagca gctacgcttc
    21661 caaatgcaaa gcccataaag cttcgtctac tctcagatgt agccataact tgctcctttc
    21721 gattttattt tttaaccaag ttaaaagttt atcgaaatta aaataaattt tttctttgtt
    21781 taacaagttt tgatatttag acaataagag caaaaagaga aaaaacaagc acaggtaaag
    21841 ttatcaaaaa gccaaattta caatattgcc aaaaagaaat attaatgcct tttctagcca
    21901 aaactccaag ccaaagcaaa gttgctaaag aacctattgg cgtaagtttt ggacctatat
    21961 ttacacctaa aagatgcgca taaatcatca aagaatcaaa agaaaaattc tcaaaatatt
    22021 cttttaatgc caaatctccg attaaaacca taggcaaatt attaaacaca gaagatccaa
    22081 aagctgaaat caaagccaca ccaaaaattc cactcttatc ttgcatcaaa aaagcatagc
    22141 ttttaaccaa aatttcactc acacctattt tatgtaaagc aaaaaccacc atataaagcc
    22201 caaaactaaa aagcaaaact ccataaggtg cttcaaaaag aattttaata ctttttttac
    22261 cttgaatttt taaaataata agccaaaaaa ttcccgccca aagcaaaaca aaaaaactta
    22321 ttttaatatt aaaaatttca cctataaaaa aactgataac aaaaagaaat aaaaatacta
    22381 tgcaaagaaa aaacaatttc aatgaaattt gctctttttt gattaattta aattcaagcc
    22441 ttttaggtaa aactctcaca taaagcacaa aaaccgtaac tatagtagaa agcaaaacaa
    22501 aaaaatttgg caaaaacata tttttagcaa attctaaaaa ttctatctta aaataatttg
    22561 ctgtgatgat attggttaaa tttgaaataa ccaaagcgtt tgaacttgca tcacataaaa
    22621 aagaaaggct aagtaaaaaa gaacttaaaa taaaagcatg atttttacaa tctttaagag
    22681 ttgaaaataa agctataata ataggtgtaa tgattaaaat cgctccatcg ttagcaaaaa
    22741 atgcagaaag aaaaaataca aaaatcaaca aaaataacat catttttttg tactgatata
    22801 aattttttct tgatttttct ctctagaaaa atacaaaatt ttactcgcaa taaaatcaaa
    22861 aaatcccaaa gcttccaagc taaaagaaag gataatcaac ccaaccaaag ttaaagaact
    22921 atcccaaacc aaagaaaaaa caaaacaagc atctttaaaa tctaccaatt gaaaaataaa
    22981 aacaaaaaaa gcccccaagc tagaaaatac ccaaataggt aaattccatg gacgccaaaa
    23041 aagtaaaact aaagtagata aaaaaataaa aaaagcaagc atttaagctt ttttcttttg
    23101 cattttgata taaatttgca aaatatccaa cgctgcagga gtgattccac tgatttgact
    23161 tgcagcaaaa atggttggag gtttatgatg attaagcttt tctacaacct cattactcaa
    23221 accacttaca cttttaaaat caaaattttc aggaatttta agctcactaa gatttttcat
    23281 tttttctact tgagcttttt gcatactaat gtaatgataa tactttgcct catttaaaat
    23341 ctctcttaag gagtaatgat ccatagtttc aaatataggg tcaagttttt ttaatttttc
    23401 catatcaaaa cttgcccttg caacaatttt ttgaagattg actatagaag aaattttatc
    23461 ttctcccaaa ctctctaaaa aagcattatt ttggttgtta ggtgtgaatt ctttagaaag
    23521 taaaaattca agtccttttt gaagattgtt tgcgatattt tgtatataag taaaatcttg
    23581 ctcgcttaaa agccctaaat catagccata ttttccaagt ctaagtatag cattttcttc
    23641 ccttaaaagc agtctaaatt ccgctcttga agtaaacatt ctataaggtt cttttgtacc
    23701 ttttattact aaatcatcga ttaaaactcc tatataagct tcatcacgcc ttaaaatcaa
    23761 aggctctttc atatctatgc ttaaacttgc attgattcct gccataaagc cttgtgctgc
    23821 agcctcttca taacctgtag ttccattaat ctgtcctgca caataaagat ttttaatctt
    23881 tttaagttct aaagtatgct taagttcagt tggctctata taatcatatt ctatagcata
    23941 accaaaacgg gttattttag cattttcaaa accttttaca gaacgcaaca tttgagtttg
    24001 tacttcataa ggtaaagaag tagaaaaacc gttaatataa tactccgtcg catcaatagt
    24061 ttgaggctct ataaaaagat gatgactttc tttgtcgcta aaacgattga ttttatcttc
    24121 tatagaagga caatatcttg gccccacacc ttcaatctgt cctgtaaaaa gtggagcacg
    24181 ataaaaatta ttcttaataa tctcatgtgt agttgtatta gtgcgtgcga tataacaagg
    24241 aagttgagta ggattaaaat ttcttgaacg aaaactaaaa gctttaggat ttacatcacc
    24301 atcttgaatt tcaagcacac taaaatcaat gctttttgca tctactcttg ggcaagttcc
    24361 tgtttttaaa cgtcccattt ttaaacccaa agtttgtaga taattgccta aatttaccga
    24421 agcaagctcc cctaccctac ctgcttgaag tttgttttca cctacatgaa taagtccatt
    24481 taaaaaagtt cctgttgtaa gtatcacttt tttggcaaaa tatgtgtttt ctaaatttgt
    24541 ttttacgcct ttaacttcat cattttctac aattaaagca ctcgcttgtt cttgagaaat
    24601 ttctaaattt gaaagtttta aaagtttatt acgtgtaatg atacggtatt tatccatatc
    24661 aatttgtgcc ctacttcctt gaacggctac acccttactt tcatttaaaa tgcgaaattg
    24721 tatccctgct tcatcagtga tttcacccat aagaccaccc atggcatcaa gttcttttac
    24781 caaatgccct ttagcaagtc cacctatggc tggattacaa cttgccgctc ctatttgctc
    24841 aatcaatgta gttaaaagta aggttttttt acccattcta gcagcagcag cacttgcttc
    24901 aacacctgca tgtccaccac ctataacaat gacatcaaac atattttgcc ttgaaaaatg
    24961 tgaattttta aaagaaagat tatataatat ttagacttaa aacaaactcg ttttaagtct
    25021 aacaaaaatt tatttagctt cttgaagaga aaagattagc tcattataag ttttatctgc
    25081 atctttgcag aaatttttaa gcatctcaac acccttattt aagccttgtt gctgttctgc
    25141 tcttaaaaga tcgctataaa gactttctat tgtagaaata gcgcttttat ttggcatacg
    25201 acgaacggaa taatagccta tgatattatt attaacatct attgatgggg ttacatttgc
    25261 aaaaacccaa tagtaattat tatctttggt tttgtttttt acgtaagcaa aaatttcctt
    25321 accctctctc atataatccc ataaatattt aaaaacagtt tttggcatct cttcatgtct
    25381 tactatgtta tgaggtttat ttaaaacttc acccatggta taacctgcat attttaaaaa
    25441 atcatcattt gcataaacta ttctaccttt taaatctgtt ttagaagtaa ttaaactatc
    25501 ttcttgcaaa aaaatttctc ttgacatttt cccaccctct taatttatat ttttaatttt
    25561 gctaagattt cagcacttct ttgctctagt gatttaatat catttacaat cgcatcataa
    25621 gctttttgat cgatataatc ttgacttgat tcttctattg cttttttagc attatctttt
    25681 ataaattctt tagctaaatt taactcagtt tcagaactaa gctcattaat aacaccttga
    25741 gctctctcat cttgacaaag attagaaatt ggatctacac tttcaagatt gaaattttga
    25801 gccccattta aatttaaata tatatttgat ttataaagaa tatgatcgat tttaaccaca
    25861 gacaaaatca atctctttgc aaaggatcca aaattaacac caagagcact actattttct
    25921 tctagacgtt taaaagcttg agaaaattta ttaattcttt cttcagattc actaacaatg
    25981 ttaaaaactt gctcactgcc actttggata tttacaaaat cttgttgcat agtctgaatt
    26041 gcaatagaaa tttcgcttgt agatctttga gttctttctg ctaactttct aacttcatca
    26101 gccacaaccg caaagcccct accatgctct cctgcacgcg cagcttcaat agcagcattt
    26161 aaagctagaa gattggtttg atcggctata tcgcgtatta cttcaaccac tgaagtaata
    26221 ttttgggaat tagccacaaa agtttgcact gtttccttgc tcgaatttac aacatccatt
    26281 aaagaaccca tagcactttg aagagaatcc acctctgaac cattttctgt agctgtatga
    26341 gaaatggcat ccactgtatc atatacattt ttcatcatgc taatatcttg atttaatgag
    26401 ctagaaattt gagacatgtc tttattttga tttccaaggc ttaaatccat taaagttctt
    26461 gataaagcat ttttaaaagt agatcttgct gtcacttcta tgtttgctaa agctttattt
    26521 ataaattcga tattatgagc aaaaattcct tttaaacctt caggcaaagc cttgcgataa
    26581 aattcacctt tttgagaaca agaaatagaa gtattaattt cccttaagta agcttctagc
    26641 ccatcaatag tattgttaag attatctgct atttcggcta attttttgct ttttgttttt
    26701 acatagataa ttctattgtc aaaatttcct tcttttaact ctctacaaag aaccaaaagt
    26761 ttatctatca ttatttgctc atctttgtgt tgtctaagca aataaatcat taaaacagcg
    26821 attaaaacaa aaattatcgc tccaacaaaa atatgaataa aaatgacacc taaaacaccg
    26881 ataacactta gaaaaatagt tgataataat ccatttttca ccataaattt acccctttta
    26941 ttgaaaattt tttgaaatca taaatcaaaa caatacttta ataatatatt actttaattt
    27001 ttaggcga
//
LOCUS       DBBXPZ010000015        26267 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.015, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000015 DBBXPZ010000000
VERSION     DBBXPZ010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 26267)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26267)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26267
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.015"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..205)
                     /locus_tag="ACJFD7_000492"
     CDS             complement(<1..205)
                     /locus_tag="ACJFD7_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859336.1"
                     /translation="MKKKILYIVVFFVVLILALFIVLKNGIVISSIQFDFLKLEQLYI
                     KLDKKLIVRAKNITINETQNSEIS"
     gene            120..1121
                     /gene="mltG"
                     /locus_tag="ACJFD7_000493"
     CDS             120..1121
                     /gene="mltG"
                     /locus_tag="ACJFD7_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HGG0859337.1"
                     /translation="MTIPFLSTINKANISTTKNTTIYKIFFFIRNFFLIFILGIFYYL
                     TQPLKSNSVVFIPQGSISQIITYLKQNKYQMSNIDKYILFFLGHPQSGWINIGTKDLN
                     RAEFLHKLTIAKAALQTITLIPGETSVIFLEQAAKQLGLDKDILLKEFQAQAPYDEGV
                     FLPETYKIPKGITENLLIQMLLNHAEISNKKTSVKIFGDYNPKKWHQYIIIASVIQKE
                     AANDNEMPIVASVIYNRLKKGMKLQMDGTLNYGIYSHVKVTPQRIRQDNSSYNTYKFT
                     GLPKEAVCNVSLAAIRAAIFPLKTDYLYFVRDKNTGVHIFSTNIDDHNKAINLQKGK"
     gene            1202..1633
                     /gene="flgB"
                     /locus_tag="ACJFD7_000494"
     CDS             1202..1633
                     /gene="flgB"
                     /locus_tag="ACJFD7_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030694 - bacterial-type flagellum basal
                     body, rod [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HGG0859338.1"
                     /translation="MINPFKSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEF
                     ETALVNRANEIFKKNDKKELELAVTEEGHQKPWKFPDPSKSTIYLRDGHLARNDANTV
                     DLDVETTEMSKNTVMITALDGVLRRQSNIFSSILDASSKLS"
     gene            1643..2137
                     /gene="flgC"
                     /locus_tag="ACJFD7_000495"
     CDS             1643..2137
                     /gene="flgC"
                     /locus_tag="ACJFD7_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030694 - bacterial-type flagellum basal
                     body, rod [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HGG0859339.1"
                     /translation="MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRR
                     REVIFKVTDFDKLLNEQINKDNNFLKYENPLNDPSSPEEAKPAIQSVAVDKVVRDDKD
                     FRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID
                     LLRG"
     gene            2144..2440
                     /gene="fliE"
                     /locus_tag="ACJFD7_000496"
     CDS             2144..2440
                     /gene="fliE"
                     /locus_tag="ACJFD7_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009431 - bacterial-type flagellum basal
                     body, MS ring [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HGG0859340.1"
                     /translation="MNNINDLRLNNNISNTNKNQNSTGIGDEFAKMLKNEIDDLNKAQ
                     ESGEAAMTDIATGQVKDLHQAAIAITKAESSMKFMLEVRNKAISAYKEITRTQI"
     gene            2447..4255
                     /locus_tag="ACJFD7_000497"
     CDS             2447..4255
                     /locus_tag="ACJFD7_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan D,D-transpeptidase FtsI family
                     protein"
                     /protein_id="HGG0859341.1"
                     /translation="MQEYKKNRVSKVAFAYCMALLFMIIFISSTFFLTSKRHIPNTEK
                     DQYALALRGSIITKDNFTITSSKQIYRAEIDLRSINKDKFDLFLKLFQIYSGISNDQV
                     ADIKKRMQNQKKRSYNFVLLQNLDSKQASYLKDLAKKLYIQGFFKAFTNNSGRVETRG
                     LNIIEHEEDRIYMSKDSFTPIIGYTKMILDPESGILKNIGVKGLEKYYDACLSPVQNE
                     KIQGLKDIGGNIILNLNSLQQKKINGCDLYLNLSLKLQKSIEKAIDQRNEDLKANEII
                     VGVMESKTGRILALASSRRYDPQNRGKDLSVLNASAIEYGYEAGSVIKPFIFTTALRL
                     GKIKMDEVINTYGGSYKLGRFTIKDDHKMDKMTMEEVIRYSSNIGMIQIAKRLNNIEI
                     VSGLKIFKFGEKSGIDLPYEQKGEIPNPKRLRDIEKSVLSYGYGLKTTFIQLLAAYNV
                     FNNDGFYITPRLAEKFYQNGRFTNLDDDVKKEKILSSEAAKTMQNVLINVIEKGTGKK
                     AITQGIIAGGKTGTARIAERQGYTSNRYNASFFGFANDLNHAYTIGVLVRHPTKPYSY
                     YAAQSALPMFKDVVDILINEEFLTPIQDNNQTSTNN"
     gene            complement(4331..4558)
                     /locus_tag="ACJFD7_000498"
     CDS             complement(4331..4558)
                     /locus_tag="ACJFD7_000498"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859342.1"
                     /translation="MALEYNKIRSNLGDLLRSIEELRVVEDSEKLYLIIKNLQKGKEI
                     LKEIDTLTLSNIEHLISVRKITTVEGISILK"
     gene            complement(4609..4944)
                     /locus_tag="ACJFD7_000499"
     CDS             complement(4609..4944)
                     /locus_tag="ACJFD7_000499"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859343.1"
                     /translation="MVKFSDTAIEVLRKESEHLYNNTYAIVAHAIGFSCKDIQSDKSF
                     KEILENKKWFSKNVDLDYLYQTRIKVLFEAIIDFSTKAQVYINDETKNHKIFTFKMAA
                     KNLAETTKI"
     gene            complement(5020..5880)
                     /locus_tag="ACJFD7_000500"
                     /pseudo
     CDS             complement(5020..5880)
                     /locus_tag="ACJFD7_000500"
                     /inference="COORDINATES: protein motif:HMM:NF037997.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005436 - sodium:phosphate symporter
                     activity [Evidence IEA];
                     GO_process: GO:0035435 - phosphate ion transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0044341 - sodium-dependent phosphate
                     transport [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi symporter"
     gene            complement(6023..6457)
                     /locus_tag="ACJFD7_000501"
     CDS             complement(6023..6457)
                     /locus_tag="ACJFD7_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859344.1"
                     /translation="MLGIYLLIAALSFLALYFAVKKLTLNIDERTLLEPIKMDIYPKF
                     CDLIDEKIREFKENIQNANLTLKNSNQKDEFLEKLGDLSRELTFIQTMNLSNKNDSIW
                     QNELFSFLKELENLLLEYLEKGEEEAENLREFLMDEFEKLKG"
     gene            complement(6457..6774)
                     /locus_tag="ACJFD7_000502"
     CDS             complement(6457..6774)
                     /locus_tag="ACJFD7_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HGG0859345.1"
                     /translation="MIKNIPASLWTKQDLNTYQIFDVRTPLEWEEGILPNAQCVALYD
                     NQGLLNAKFLDEFQSKRDESKKLAFICRSGHRSMVAAEFIAEKLGLESINLDGGMLAL
                     KGY"
     gene            complement(6771..8597)
                     /gene="htpG"
                     /locus_tag="ACJFD7_000503"
     CDS             complement(6771..8597)
                     /gene="htpG"
                     /locus_tag="ACJFD7_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HGG0859346.1"
                     /translation="MQFQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLS
                     VSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLEN
                     LSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANGYEINDASK
                     EEQGTSITLYLKDDEFANTYKIESIIEKYSNHIQFPIFMEKEEFTPAKEGEEEGKTEL
                     KISQINKANALWRMQKSSLKVEDYERFYEQNFHDSNKPLLYLHTKSEGKLEYNSLFFI
                     PQNAPFDLFRVDYQSGLKLYVKRVFISDDDKELLPTYLRFVRGIIDVEDLPLNVSREI
                     LQENQILKGVKEASVKKILGELEKLKNNDKEKYLSFFKTFGKVLKEGLYGFGGEKDSL
                     LKLMLYKSTKGENLRSLEEYKNDLQGEQKEIFYIAGNNESLLRTSPLLEEYKQKNIEV
                     LLMDDEIDSLVTPMLEFEGLKFVAINQVEDKNELSDEEKNTFAPLVAKFKELLKDQVE
                     DVRLTSRLKDSPSCIVYDKNKPDFAMQQLLKQMGQEQNFKPILEINPKHAIFTGLKNN
                     ESFSADIATLVLNMAKLSEGMGVDNPAEFNASLTKIINKAFS"
     gene            complement(8670..9038)
                     /gene="crcB"
                     /locus_tag="ACJFD7_000504"
     CDS             complement(8670..9038)
                     /gene="crcB"
                     /locus_tag="ACJFD7_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:1903425 - fluoride transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:1903424 - fluoride transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HGG0859347.1"
                     /translation="MLNTLLVVGFGGFIGAILRMFSINLVNKFFPYSISLGTLFVNIL
                     GSFIIGLLFSYAQNKGLSPLLKSFISTGFLGAFTTFSTFSYQNLLLLQSGNYLHFALN
                     IILNVFLCLFAAWLGFIIFK"
     gene            complement(9032..9724)
                     /locus_tag="ACJFD7_000505"
     CDS             complement(9032..9724)
                     /locus_tag="ACJFD7_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HGG0859348.1"
                     /translation="MIYKKIKALYFWIFFVLSVALVIFCFCFTKSQNTLWKIRKIWAK
                     FQRYTISYKQEIIGTFNPQAQMILMNHQSALDIIALEELYPKNLCWIAKKELGEIPIF
                     KVAMKKPKLLCIDRKNPRDLVRVLKEAKERISEDRVLAIFPEGTRSKNEKMLKFQSGA
                     KILSEKLNLKVQPILIVDSAKILDTKSFSASSGVLKIICMDLVDTNDDKWLENTRKKM
                     QELLDQERAKLC"
     gene            complement(9705..10901)
                     /locus_tag="ACJFD7_000506"
     CDS             complement(9705..10901)
                     /locus_tag="ACJFD7_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859349.1"
                     /translation="MKILLTLIFSVVVLFGRGEISVFSGQDENMQKELQKLPQEEQKI
                     YQNIPPSDENNDFESNVDDPFVAKGSLVLTNDEYPSRVYVGEVFPITIYARTTENTKF
                     DFNISVEKTNLSFLNPDAKWEFINNEYKTTLWFEAKNSNASLSKISIKLLRNNEAFQE
                     ADINLNPIKFENTLSNKDFSHLVASSLEIKKVKASYFDDANIIMMVELNATNTNLKSF
                     FIEGIQKQGIENLKGDFNASSAFYYAILPLSKTNFEFSYFNKDSKKLENINLKLKISD
                     DEISTQSDLNPVNKDLNIYKQYTLWFLAVLFGALFVWRKNYIILALAVVCFALSFLVD
                     TNTQNAIIKAGSRAKILPTEPSTYFYTANADEKVEVLGKRQNYIKVLFSDGKIGWVNK
                     DDLQKN"
     gene            complement(10873..11545)
                     /gene="purQ"
                     /locus_tag="ACJFD7_000507"
                     /pseudo
     CDS             complement(10873..11545)
                     /gene="purQ"
                     /locus_tag="ACJFD7_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343946.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
     gene            complement(11547..11792)
                     /gene="purS"
                     /locus_tag="ACJFD7_000508"
     CDS             complement(11547..11792)
                     /gene="purS"
                     /locus_tag="ACJFD7_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HGG0859350.1"
                     /translation="MEVIVNISLKNGVLDPQGKAVEKALHSLNFNSVKEVKIAKQIKI
                     SLDEKDEKLAKEQVKKMCEELLVNSVIEDYELIIEKE"
     gene            complement(11801..12511)
                     /gene="purC"
                     /locus_tag="ACJFD7_000509"
     CDS             complement(11801..12511)
                     /gene="purC"
                     /locus_tag="ACJFD7_000509"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HGG0859351.1"
                     /translation="MTKKEMLYEGKGKKLFKTDDENLLISEFKDDLTAFNAEKRGNES
                     GKGALNCKISTEIFHLLEKNGIKTHLVETISDTEQVVKKCKIVPIEVIVRNVATGSLT
                     KRLGIKDGTVLPFALVEFCLKDDALGDPFINDEHCLILNLVQNEAQISEIKNMARKIN
                     SILTPFFDNKNLRLIDFKIELGLTKDNELVLADEISPDSCRFWDKFSNEKLDKDRFRQ
                     DLGNVKMAYEEVLKRILN"
     gene            complement(12513..13847)
                     /locus_tag="ACJFD7_000510"
     CDS             complement(12513..13847)
                     /locus_tag="ACJFD7_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HGG0859352.1"
                     /translation="MMELILKTKRFFAGLAGFATTFILCLFLTSHLQAKVDQKEEQVQ
                     KRLEALDKLTKTLAIVEQYYVDDQNISDLVDKSLSGLLSNLDAHSSFLNEKDFNDMKI
                     QTNGEFGGLGITVGMKDGALTVVSPIEGTPADKAGIKSGDIILKINDEATLGINLNDA
                     VDKMRGKPKTQITLTIFRKGATKPFDVTLTREIIKIESVYAKMIENENILYLRVTNFD
                     KNVVDVASKELKKYPNVKGVILDLRNNPGGLLNQAIGLVNLFVDKGVIVSQKGRIASE
                     NQEYKADPKNKISNASLVVLVNGGSASASEIVSGALQDLKRGVIVGENTFGKGSVQQI
                     IPINKTEALRLTIARYYLPSGRTIQAVGVKPDIEVFPGKVNTQEDGFSIKESDLKQHL
                     ESELEKIDKNKKEDKQENKDNKNLISQKQINDDAQLKSAIDTIKILNIKQGQ"
     gene            13974..14264
                     /locus_tag="ACJFD7_000511"
     CDS             13974..14264
                     /locus_tag="ACJFD7_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensing transcriptional repressor"
                     /protein_id="HGG0859353.1"
                     /translation="MCQEKHTHTHSQKHLKAVCNRLSRTIGHLSAIKRMVENDKDCSE
                     ILIQLAAVKAEVNNTAKIVLKEHLAHCMVHAIEENDIQSIEELNKAIDMFMK"
     gene            14376..16949
                     /locus_tag="ACJFD7_000512"
     CDS             14376..16949
                     /locus_tag="ACJFD7_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HGG0859354.1"
                     /translation="MANIQDFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALSVDN
                     ASILNQILNKLNISKEALELEIKSRISKLATSSNVNRENIRFSNELINSLENAKGLMS
                     ANGDSYLSVDTWLISESQKSPIKEILTQFLDLREFQKELESLRAGRKIDSKTSDETLD
                     SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVE
                     ALAQRIIKKDVPKSLQNKKVIALDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILF
                     IDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYRKYFEKDAALQRRFQ
                     PVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAID
                     LIDEAAAELKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELAN
                     LKEKQNALNSQFENEKSVFDGISAKKKEIDLLKNEASLAKARGEFQKAAELEYGKIPS
                     LEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQKFLEVE
                     KHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKF
                     LFDDEKAMIRFDMSEFMEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEV
                     EKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILTSNIASSAIMNLSGKEQEDAV
                     KNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENA
                     ALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKK
                     A"
     gene            complement(16977..18908)
                     /locus_tag="ACJFD7_000513"
     CDS             complement(16977..18908)
                     /locus_tag="ACJFD7_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HGG0859355.1"
                     /translation="MKILKYIFSFFTLLFIAGFIYVAYLFTSADTEGYTFKEYKPPLT
                     TQIYDRNGKLVANTFEQHRFYAPYEELPPRLIEALVAIEDTSFFEHNGVNIDAIFRAA
                     VKIIKSGGKTMEGASTLTQQFIKNTELTPERTITRKIREALLAYKMETILTKEQILER
                     YLNFIFFGHGYYGVKTAALGYFHKNLNELSLKEIAMLVGMPKAPSSYDPTKHLDLSIS
                     RANNVISRMYNLGWISKADYDTAIKEIPQVYDDTLTQNAAPYVVDEVIKQLSPNIKDL
                     KTGGYKIILNIDLDVQNMAQNALKFGYDEIVKRDKDANLSTLNGAMVVVNHQSGDVLA
                     LVGGVDYEKSNYNRATQSMRQPGSSFKPFVYQVAINLGYSPMSEIADISRIFEGGAGN
                     NEDWKPKNEGGKFLGLITLKEALTRSRNLATINLALDMGLDVLYSKLMEFGFKDIPPN
                     LSIVLGSFGISPLEYSKFYTMFGNYGTIKDPQIIRQVQDKTGKTIMEFNLNERKVSDE
                     AQSFLVLDMMRNVVEKGTGRNARVKDIEIAGKTGTTNKSVDAWFCGLTPEIEAIIWYG
                     NDNNKPMRYTEGGARTAAPVFREFLTQYIEKFPDTTRKFSIPNGVYRGNYKGESAYYT
                     TKSPLPKANMKFNESEIIF"
     gene            complement(18905..19456)
                     /gene="maf"
                     /locus_tag="ACJFD7_000514"
     CDS             complement(18905..19456)
                     /gene="maf"
                     /locus_tag="ACJFD7_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HGG0859356.1"
                     /translation="MLILASSSISRANLLKTAKIDFRQVSFDYDENLNKNISPFLYVQ
                     KIVLEKERQFLSTLGKDFQNQNLLFADSIVCIDEKILTKAKDKKEAYEMLALQNGKYA
                     SILSAFLLVKPEKRVFSLSKTTLYFKNFDENALRDYVENDLYKGKAGCIMCEGFHQNF
                     ITQQVGNLSTALGLDIQTLKAYL"
     gene            complement(19456..21984)
                     /gene="alaS"
                     /locus_tag="ACJFD7_000515"
     CDS             complement(19456..21984)
                     /gene="alaS"
                     /locus_tag="ACJFD7_000515"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HGG0859357.1"
                     /translation="MDIRKAYLDFFASKGHEITPSSPLVPDDATLLFTNAGMVPFKSI
                     FTGEIPRPNPPRKTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQA
                     IAYAWEFVTEVLKLPKDKLYVTVHENDDEAFNLWQKHIQKERIYKFGDKDNFWQMGDT
                     GPCGPCSEIFYDQGQEHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPS
                     IDTGMGLERVTAIKEGKFSNFDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRS
                     SVFLLAQGVSFDKEGRGYVLRRILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTY
                     LNEKKDFVKEQIRLEEERFLSTIENGIEIFNEELKNTKEIFSGEVAFKLYDTYGFPLD
                     LTADMLREKNLKVDEEKFELFMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFV
                     GYEKAECESKILALLDEDFKEVSTLKDAGWVMLENTPFYATSGGQSADSGFIAKREVL
                     DTQKFFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGSH
                     VSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKS
                     GAIALFNEKYQGNVRVLTLGESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAV
                     VSKAALEFVKNQLEELSKVKDELKNNDILSGIKKLKNEILSLKNELKNSSKTELDSKN
                     IQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEKITLAAGVKDVPLKAGAL
                     VKEAAQILGGNGGGRDDFATAGGKDLSKINEALKQSLETIEKAL"
     gene            22099..23172
                     /locus_tag="ACJFD7_000516"
     CDS             22099..23172
                     /locus_tag="ACJFD7_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HGG0859358.1"
                     /translation="MNFINLQAQYLAYKDEINAEIESVLSSSSFIGGAKLNEFEQNLA
                     HFLGVKHAIGCSSGTSALYLALRVLDIGKDDEVIVPSFTFIATAEVVALVGAKPVFVD
                     INLSNYNLDFKAVQKAITPKTKAVIAVSMFGQMSDLRALEEILKDKNITLIEDGAQSF
                     GASFKGEKSCSIAKISCTSFFPSKPLGAYGDGGAIFCHDDEIAKKIRILLNHGQTQRY
                     KHEFIGINGRLDTLQAAILNVKLKYLEKELDKRQKLAQIYNANLKNCQIPQINPNAFS
                     AYAQYSVLVEDRASVLQKFEKANIPYAIHYPTPLHKQPCFSEFSNLELKNSEYASEHI
                     LSLPFSPFLSEEEQEQVICIFKD"
     gene            23177..24043
                     /locus_tag="ACJFD7_000517"
     CDS             23177..24043
                     /locus_tag="ACJFD7_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HGG0859359.1"
                     /translation="MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDD
                     IFYDDLDKFLNQNNDIIIIATPTNSHLTIAKKVFKQCKCVLIEKPLALNLKEIDEISN
                     LAKEYSIKVGVGFCERFNPAVLALKKELENEEIISINIQRFSPYPQRISDVGILQDLA
                     VHDLDLLCFLSKQEITKTNLLKKYTQDQTRESESIILCELEKCIASIHQSWNSTQKLR
                     KIHLITKNHFYEANLNDFSLLKDGNFIELTQQSPLFSEHEALLKLIDNQPNHLASTSD
                     AYKVQEILERFA"
     gene            24040..24951
                     /gene="hemH"
                     /locus_tag="ACJFD7_000518"
     CDS             24040..24951
                     /gene="hemH"
                     /locus_tag="ACJFD7_000518"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HGG0859360.1"
                     /translation="MKLVLFLNMGGATNLQDCEVFLKNMFNDPYILGIKNRFLRKFVA
                     WIITKARVKAMQENYKKMGGKSPLNELTQSLCDKLNLKQDEFKFDFVNLYVPPFATEI
                     LQKYTLNASDEIILFPLYPHHSCTTVTSSLEVLQNEISKQKIQAKVKTIDIFYKNELY
                     NEMIVSHILAKKSKFDAKILIFSAHSLPQSIIDKGDLYEKHVNDHVEILKEKLKDHFD
                     EFILAYQSKLGPVKWLEPNTSDVLANLNDKALIYPISFCIDCSETIFELGMEYKHLAK
                     CDYDLITCPNDSDEFIHFILKYLSDFN"
     gene            complement(25011..26246)
                     /locus_tag="ACJFD7_000519"
     CDS             complement(25011..26246)
                     /locus_tag="ACJFD7_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium channel activity
                     [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HGG0859361.1"
                     /translation="MNAINSSFIVLCTLLVLLMTPALAMFYSGMVRSKNTLNTIMNCF
                     IVFGVITLQWVVLGFSLSFGKDEGLGLVGNFENFLLEGISGYNASGVPNILFVIFQMM
                     FALIASAIITGSLVGRIKLGVLVIFLLFWSTLVYDVLAHMIWSSEGFLLKRGSLDFAG
                     GGVVHISSGVAGLVGALMVGARKSDDEDKNAHSIPYAFLGAILLFIGWLGFNAGSAGE
                     MNDIAINAFIVSIISAACGFLSWVVLEWLIHKKPTILGGLSGLVAGLVGITPACGYVD
                     IYASLVIGTLSSVFCYFGLSFIKYKLKWDDSLDAFSLHGIGGIWGGIATGFFASAKVN
                     PNVIAQNALGEGFFISGSLELLKEQIFAIVICVVLSALISFVIFKIISCFTDLRVKEE
                     VEQKGLDVSLHGEKAYTLA"
BASE COUNT         9336 a         4393 c         3669 g         8869 t
ORIGIN      
        1 atgaaatttc ggaattttga gtctcattta tagtgatatt ttttgctcgt acaattaatt
       61 ttttatctaa tttaatatat aattgttcca attttaaaaa atcaaattgg atactagaga
      121 tgacaattcc atttttaagc actataaaca aagctaatat aagcacaaca aaaaatacaa
      181 caatatataa aattttcttt ttcatacgca acttcttttt gatatttatt ttggggattt
      241 tttattatct aactcagcct ttaaaaagca attctgtggt atttattccc caaggttcaa
      301 tttctcaaat tataacatat ttaaagcaaa ataaatatca gatgagtaat attgataaat
      361 atattttatt ttttttagga caccctcaat caggctggat caacataggt acaaaagatt
      421 taaatagagc tgaatttcta cataaactca ctattgctaa agcagcactt caaaccatta
      481 ctcttatccc aggagaaaca agcgtaatct ttctagaaca agcagccaaa caacttggac
      541 ttgataaaga tatactttta aaagaatttc aagctcaagc tccttatgat gaaggagttt
      601 ttttaccaga aacttataaa atcccgaaag gcattacaga aaatctactc attcaaatgc
      661 ttttaaacca tgctgaaatt tccaataaaa aaacttctgt gaaaattttt ggtgattata
      721 atccaaaaaa atggcaccaa tatatcatca tcgcttctgt aatacaaaaa gaagctgcta
      781 atgacaatga aatgcctata gttgcaagcg taatttacaa tcgacttaaa aaaggtatga
      841 aacttcaaat ggatggaact ttaaattatg gaatttattc ccatgtaaaa gttaccccac
      901 aaagaataag acaagataat agctcttata atacctataa atttacagga ttgcctaaag
      961 aagcggtttg taatgtttct ttagctgcta ttcgtgcagc tatttttcct ttaaagacag
     1021 attatttata ttttgtgcgt gataaaaata ctggagttca tatttttagc acaaatatag
     1081 atgatcacaa taaagccata aatttacaaa aaggaaaata atttttgata tttttataca
     1141 aaatagttaa attggaacag tatttgcttg ttaatattaa aaattataaa aaggataaaa
     1201 aatgattaac ccatttaaat caaaagaact agtcactggt gctttagcgg gtagaaatct
     1261 aagaaatcaa ctcatcaatg ccaatcttgc aaatgttgat actccttttt ataaagcaag
     1321 agatattgaa tttgaaacag ctttggtaaa tcgtgcaaat gaaattttca aaaaaaatga
     1381 caaaaaagaa ttagaattgg cagtaaccga agaagggcat caaaaacctt ggaaatttcc
     1441 tgatcctagt aaatctacta tttacttaag agatggtcat ttggcaagaa atgatgcaaa
     1501 tactgttgat ctagatgtag aaactacaga aatgagtaaa aatacagtta tgataacagc
     1561 tcttgatgga gttttaagaa gacagagcaa tatctttagt tctatacttg atgcaagctc
     1621 taaattaagt taaaggtaaa ttatggcata cttaagtgat tttgatatta gtggttatgg
     1681 tttaagtgct caacgtttta gaatgaatgt tattagctct aatatagcta atgcaaacac
     1741 tacaagaaca gctgaaggtg ggccttatag aagacgcgaa gtgatcttta aagtaacaga
     1801 ttttgataag cttttaaatg agcaaattaa caaagataat aattttttaa aatatgaaaa
     1861 tcctttaaat gatccaagtt cgccagaaga agctaaacct gctattcaaa gtgttgcagt
     1921 ggataaagtg gtcagagatg acaaagattt tcgtatgaag tatgatccaa gccatcctga
     1981 tgcaaatgct gaaggttatg tagcgtatcc aaatgtaaac cctgttattg aaatggcaga
     2041 tttgattgaa gctacaagag cttatcaagc caatgtaagt gcttttacaa gtgcaaaaac
     2101 tatagctcaa agtgcgattg atttattaag aggataataa aaaatgaaca atattaatga
     2161 tttaagatta aataataata tttcaaatac caacaaaaat caaaattcca caggaattgg
     2221 tgatgaattt gccaagatgc ttaaaaatga aatcgatgat ttaaataaag cacaagaaag
     2281 tggagaagct gcaatgacag acattgccac aggacaagta aaagatttac atcaagcagc
     2341 tatagctatc actaaagctg aaagcagcat gaaatttatg ctagaagtaa gaaataaagc
     2401 gatcagtgct tataaagaaa tcacaagaac tcaaatttaa accctaatgc aagaatataa
     2461 aaaaaatagg gtttcaaaag ttgcctttgc ctactgcatg gcacttttgt ttatgattat
     2521 ttttatcagc tctacttttt ttcttacatc aaaacgtcat atacctaaca ctgaaaaaga
     2581 tcaatacgct cttgctctaa gaggatcgat tataaccaaa gataatttta ctatcacaag
     2641 ttctaaacaa atttatcgtg ctgaaattga tcttagaagc attaacaaag ataaatttga
     2701 tctattttta aagctttttc aaatttatag tgggataagt aacgatcaag tagcagatat
     2761 taaaaaaaga atgcaaaatc aaaaaaaacg ctcttataat tttgttcttt tacaaaactt
     2821 agactccaag caagcaagct accttaaaga tcttgctaaa aaactttata tacaaggttt
     2881 tttcaaagct tttacaaata actcaggaag agttgaaaca agaggattaa atatcatcga
     2941 acatgaagaa gatagaattt acatgtcaaa agattctttt actcctatta tcggttatac
     3001 taaaatgata ttagatccag aaagtggaat tttaaaaaat ataggagtta aaggtttaga
     3061 aaaatactac gatgcatgtc taagccctgt tcaaaatgaa aaaattcaag gacttaaaga
     3121 tataggtgga aatattattt taaatctaaa ttcactacaa caaaaaaaga tcaatggttg
     3181 tgatttatat ttaaatcttt ctttaaaact acaaaaaagt atagagaaag ctatagatca
     3241 aagaaatgag gatttaaaag ccaatgaaat catcgttggg gtaatggaaa gtaaaacagg
     3301 aagaatttta gctctagcaa gctcaaggcg ttatgaccca caaaatcgcg gaaaggatct
     3361 atcagttctt aatgcaagcg ctatagaata cggctatgaa gcaggttctg ttatcaaacc
     3421 ttttatcttt acaacagcct taagacttgg taaaataaaa atggatgaag tgattaatac
     3481 ttatggcggt tcttacaagc taggacgttt caccatcaaa gacgatcaca aaatggataa
     3541 aatgactatg gaggaagtta taagatattc ttcaaatata ggcatgatac aaattgctaa
     3601 aaggcttaac aatatagaaa tcgtatcagg acttaaaata tttaaatttg gcgaaaaaag
     3661 tggtattgat ctaccctatg aacaaaaagg agaaattcca aatcctaagc gcttaagaga
     3721 tatagaaaaa tctgttttaa gttatggtta tggacttaaa acaaccttta tacaactcct
     3781 tgcagcttat aatgttttca acaatgatgg gttttatatc acaccacgtt tagctgaaaa
     3841 attctatcaa aatggacgct ttacaaatct tgatgatgat gtaaaaaaag aaaaaattct
     3901 ttctagcgaa gccgctaaaa cgatgcaaaa tgttcttata aatgttatag aaaaaggaac
     3961 aggaaaaaag gcaattacac aaggtattat tgcaggaggt aaaacaggaa cggcaagaat
     4021 agccgaaaga caaggttaca cctcaaatcg ctacaatgca tccttttttg gttttgcaaa
     4081 tgatttaaat cacgcctata ccataggagt tctcgtaaga catcctacta aaccttatag
     4141 ttattatgct gcacaaagtg ctttgcctat gtttaaagat gttgttgata ttttaatcaa
     4201 tgaagaattt ctaacgccta tacaagacaa taaccaaact agcacaaaca actagtttga
     4261 tatatcttta gaaaatatca cctcaacagc acctataagt tcttcagcaa tcttagcagc
     4321 aaaagttata tcatttaagt attgaaattc cttcaactgt tgtgattttt cttactgaaa
     4381 taagatgttc aatattgctt aaggttaaag tatcaatttc ttttaaaatt tcttttcctt
     4441 tttgaagatt tttaataatc aaataaagct tttcactatc ttcaaccact ctaagctctt
     4501 cgatacttct taaaagatct cctagattcg atctaatttt attgtattct aaagccaaaa
     4561 attcattaga agagctagaa tatttcttaa tatttgcttg gataattttt aaattttagt
     4621 tgtttcagct aaatttttag ctgccatctt aaaggtaaaa attttatgat tctttgtttc
     4681 atcgttaata taaacttgtg ctttagttga aaaatcaata atagcttcaa aaagaacttt
     4741 tatcctagtt tgatacaaat agtccaaatc cacattttta ctaaaccact ttttattttc
     4801 taaaatttct ttaaaacttt tatcactctg tatatcttta caactaaaac ctatagcatg
     4861 agcaacaatt gcataggtat tgttataaag atgctcgctt tcttttctta aaacttcgat
     4921 ggctgtgtca ctaaatttaa ccaaactact atcaagatat aaaggcttgt ctttattctt
     4981 atctttagga gcttttacta ttttatttaa aaaaacaatt taaggagtaa agaataaaaa
     5041 aagcacaaca ccaattaaat taaacaaagt gtgaaataat gccactttca aagctatatc
     5101 ttctatgttt aacgcaatgg ataaaaaatt aagaaatgta taaaataagg gaaaataagc
     5161 actattaaaa aaagctatac caaaattaaa aatacaattt gcaaacgcta atttctttcc
     5221 ttcaatattg gtacttaaag aagctaaaac agccgttaca actcctccaa cactagtacc
     5281 caaagttgct gctaaggaat tttccaaact gatttgttgt gcaagtaaag cagcgacaat
     5341 aatagccatt ataactgtgc ttgattgtat aactcctgta agcaaagcac ctaatcctaa
     5401 aaaacaaaaa ctcctttaaa accagcaaaa tcaaaacgag aaagatcaat tatatgttta
     5461 aaattttcaa aaccactttt aatataatcc acacccaaaa agaaaaaacc tataccaata
     5521 aaaatattac ccaaaccttt ttaaaatact atctttttga aagaaaaata atactccaat
     5581 aatcaaaagc gggatagcca acattgaaat tttaatattt gtcaaaccaa caatcagcca
     5641 agaacttgcc gtatttccta aatttgctcc aaaaataatc cctatgcccg cactcaaaga
     5701 aataagccct gcactcaaaa aagaaatcgt aacaatagaa actaaaattg aagattgcat
     5761 aattaaagta cttaaagtac caaaaagtat actttttatc tttgtatcag ttgactttgc
     5821 taaaattttt tcaagcaaat caccactaaa aactttaaaa cctataccta aattagtcat
     5881 tccaataaag aaatattgcc actcctgcta aaagattagc aagctcgtca taacgaatta
     5941 aaataaaaat cagaactaaa gtaaaaatac ttcatgaaat aaatttaaaa tattttaaag
     6001 aatttccttc ttcttgcaat gcctaacctt ttagtttttc aaattcatcc atcagaaatt
     6061 ctcttaaatt ttcagcttct tcttcgcctt tttctagata ctcaagcaat aaattttcta
     6121 attcttttaa aaaagaaaaa agttcatttt gccagatact atcgttttta ttgctcaaat
     6181 tcatggtttg tatgaaagtc aactctctgc ttaaatcccc aagtttttct aaaaattcat
     6241 ctttttgatt agaatttttt aatgttaaat tagcattttg gatattttct ttaaattctc
     6301 tgattttttc atcgattaaa tcacaaaatt ttggataaat atccatttta ataggctcta
     6361 aaagagttcg ctcatctata tttaaagtaa gctttttaac agcaaaataa agagctaaaa
     6421 aagacaaagc tgctataagt aaataaattc ctagcattaa taacccttaa gggctagcat
     6481 tccgccatct aaattgatgc tttcaagtcc caatttttca gctataaatt cagctgcaac
     6541 catgcttcta tggccactac gacaaataaa agcaagtttt ttactttcat ctcttttgct
     6601 ttgaaattca tctaaaaatt tagcatttaa aagcccttga ttatcatata aagccacaca
     6661 ttgcgcatta ggtaaaatac cttcttccca ttctaaagga gtacgcacat caaaaatttg
     6721 atatgtgttc aaatcttgct ttgtccaaag acttgcaggg atatttttta tcatgaaaaa
     6781 gccttattga taatttttgt aaggcttgca ttaaattcag caggattatc cactcccata
     6841 ccttcgctta gttttgccat atttaaaact agggttgcta tatctgcact aaaactttcg
     6901 ttgtttttaa gacctgtaaa aatagcgtgt tttggattga tttctaaaat aggtttgaaa
     6961 ttttgttctt gacccatttg ttttaagagt tgttgcatag caaaatcagg tttattttta
     7021 tcataaacta tacaacttgg actatctttt aaacgactgg ttagtcttac atcttcaact
     7081 tgatctttta aaagttcttt aaatttagct acaagtggag caaaagtatt tttttcttca
     7141 tcgcttagtt catttttatc ttctacttga ttaatggcta caaattttaa accttcaaat
     7201 tctagcatag gagttaccaa agaatcaatc tcatcatcca tgagtaaaac ttctatattt
     7261 ttttgtttat actcttcaag caaaggagag gttcttaata aactttcatt atttcctgct
     7321 atataaaaaa tttccttttg ctcgccttga aggtcatttt tatactcttc taaagagcgt
     7381 aaattttcac ctttggtact tttataaagc atgagtttta aaagactgtc tttttctccg
     7441 ccaaaaccat aaagtccttc ttttaatacc ttaccaaagg ttttaaagaa agataagtat
     7501 ttttctttat cattgttttt aagtttttca agttcaccta aaatcttttt aacgctagct
     7561 tctttaacac cttttaaaat ttgattttct tgtaaaattt cacgacttac attaagtggt
     7621 aaatcttcta catcgataat cccccgcaca aaacgcaaat aagttggtaa aagttcttta
     7681 tcgtcatcgc tgataaatac gcgttttaca taaagtttta agccactttg ataatccaca
     7741 cggaataaat caaaaggtgc attttgtggt atgaaaaata aagaattgta ttctaatttt
     7801 ccttcgcttt tggtgtgaag ataaagtaaa ggtttgtttg aatcatgaaa attttgctca
     7861 taaaatcttt cataatcttc tactttaagg cttgattttt gcattctcca taaagcgttg
     7921 gctttattga tttgagaaat tttaagttca gtttttcctt cttcttcgcc ttctttagca
     7981 ggagtaaatt cttctttttc catgaaaatt ggaaattgaa tatgattaga atatttttct
     8041 ataatgcttt cgattttata agtattagca aactcatcat cttttaaata taaagtaatg
     8101 cttgttcctt gttcttcttt gcttgcgtca ttaatctcat aaccatttgc atcggaactc
     8161 caaagataag ctttatcatc taaagctttt ttacttaaaa cttcgatttt gctagccacc
     8221 ataaaagcag aataaaaacc tactccaaat tgtcctatga gttgagaatc ttttttagca
     8281 tcaccgctca aattttctaa aaagctttta gtgccgcttt ttgctatggt tccaaggttg
     8341 ttgataagat catctttatc catacctata ccattatcac taatacttaa agttttttta
     8401 tctttatcaa ttttgatttc aattttaggt tcaaatttta agcttttata tttatcatca
     8461 cttacgctta aaaaattaag cttatctaaa gcatcgcttg catttgaaat aagttctctt
     8521 aaaaaaattt ctttattaga atataaagaa tgtatcataa gctgtaaaag ctgattgact
     8581 tcggtttgaa attgcatttt aacttccttt gtaatttttt aaagtggtat tttagcaaaa
     8641 aatacaaatt ctaaagtaaa tttaaagatt tatttgaaaa ttataaaacc aagccatgcg
     8701 gcaaataagc aaagaaagac atttaagata atatttaacg caaaatgaag ataatttcca
     8761 ctttgcaaaa gaagtaaatt ttgataagaa aaagtagaaa aagttgtaaa agctcctaaa
     8821 aaacctgtac ttataaagct tttaagtaaa ggagataaac ctttattttg tgcataagaa
     8881 aacaaaagtc ctatgataaa agaacccaaa atattaacaa aaagagttcc aaggctgata
     8941 gaataaggaa aaaatttatt cactaaattt atagaaaaca ttcttaagat tgctcctata
     9001 aatcccccaa aaccaacaac taaaagggta tttagcaaag cttagctctt tcttgatcga
     9061 gtaattcttg catttttttt ctagtgtttt caagccattt gtcatcattt gtatcgacta
     9121 aatccataca aatgatttta agcactccgc tgcttgcact aaaacttttt gtgtctaaaa
     9181 tttttgcaga atccacaatt aaaatgggtt gaactttaag atttaatttt tcacttaaaa
     9241 tttttgctcc actttgaaat ttaagcattt tttcattttt agatctagtt ccttctggaa
     9301 aaatagccaa aaccctatct tcactaattc tttcttttgc ttcttttaaa actcgtacca
     9361 aatcacgcgg attttttcta tctatacaaa gaagttttgg ttttttcata gcaactttga
     9421 aaataggaat ttctcctaat tcttttttgg caatccagca taaattttta ggatataatt
     9481 cttctaaagc gataatatct aaagcacttt gatgattcat taaaatcatc tgagcttgcg
     9541 gattaaaagt gccaataatt tcttgtttat aagagatagt atatctttga aatttagccc
     9601 aaattttgcg gattttccaa agtgtgtttt gagattttgt aaagcaaaaa caaaaaatca
     9661 ccaaagcaac acttaaaaca aaaaaaatcc aaaaataaag agctttaatt tttttgtaaa
     9721 tcatctttat taacccaacc tatttttcca tcagaaaaca atactttaat ataattttgt
     9781 cttttgccca aaacttctac tttttcatct gcatttgccg tataaaaata agttgaaggc
     9841 tctgtaggta aaattttagc cctagaacca gccttgataa ttgcattttg agtattggta
     9901 tctacaagaa aactaagtgc aaaacaaaca actgccaaag ccagaataat gtaatttttt
     9961 ctccatacaa ataaagctcc aaataaaacc gctaaaaacc ataaggtata ttgtttataa
    10021 atatttaagt ctttatttac aggatttaaa tcactctgag tgctgatctc atcgtcacta
    10081 atttttagtt ttaaatttat attttcaagc tttttactgt ccttattgaa atacgaaaat
    10141 tcaaaatttg ttttacttaa tggcaaaata gcataataaa aagcactaga agcattaaaa
    10201 tcccctttta aattttcaat accttgcttt tgaattcctt ctataaaaaa gcttttaaga
    10261 tttgtattgg ttgcgtttag ttctaccatc ataatgatat tagcatcatc aaaataactc
    10321 gctttaactt ttttaatttc caaagaactt gccacaaggt gtgaaaaatc tttattggat
    10381 aaagtatttt caaatttgat aggattaaga ttgatatcag cctcttgaaa agcttcatta
    10441 tttctaagaa gtttgataga aattttactc aaactagcat ttgaattttt ggcttcaaac
    10501 cataaagttg ttttatattc gttattgata aattcccatt ttgcatctgg atttaaaaaa
    10561 gataagttag ttttttctac gcttatgtta aaatcaaatt ttgtattttc cgtagtgcga
    10621 gcatagatcg taataggaaa aacttctcca acatataccc tacttggata ttcatcattt
    10681 gtaagaacca aactcccttt agctacaaaa ggatcatcta cattgctttc aaagtcattg
    10741 ttttcatcac ttggcggaat attttgataa attttttgtt cttcttgggg taatttttgt
    10801 aattcttttt gcatattttc atcttggccg ctaaatacag aaatttcacc cctgccaaac
    10861 aatacaacaa cactaaaaat taaagttaat aaaattttca agataaaaag cctttaagca
    10921 tttttaaacc tacatcatta cctagaactt tttcacaagc acgctcagga tggggcataa
    10981 gtccaaagat ttttttgttt tcatcacaaa ttcctgcgat atcaaataca gaaccatttg
    11041 gatttggctc gtattttaga ataataagat ctttatcttg caattctttt aaagtagtct
    11101 catcagcgta ataatttccc tctccatggg caattggtaa actaataatt tcatcttttt
    11161 tgaaattttt caaaaaggca ttatcattag aaaccactct taaactttgg ttttttgaga
    11221 taaagctaag attgttgtta tgcttcattg caccttttaa aagaccgctt tcaagtaaaa
    11281 tttgaaaacc attacaaata cctaagatat atcctccctt ttttgcatga ttaaaaacac
    11341 cttgcatagc aggagcaagt tttgcaatag ctgcacatct tagataatct ccataagaaa
    11401 atccgcctgg caaaacaact aaatctgcat caaattcttt ttcttcatgc caaataatct
    11461 gcgtttttac tccaagtttt tcaaaggcat aagctgtatc aaattcacaa tttgtcccta
    11521 gaaatctaat aatagcaact ttcattttac tctttctcaa ttataagctc ataatcttca
    11581 atgacgctat ttaccaacaa ctcttcacac atttttttta cttgttcttt ggctaatttt
    11641 tcatctttct catcaagaga aattttgatt tgttttgcta tttttacttc tttaacacta
    11701 ttaaaattta aagaatgcaa agctttttcc accgctttgc cttgtggatc taaaacccca
    11761 ttttttaaag aaatatttac aataacttcc atatttttcc ttaatttaat attcttttta
    11821 aaacttcttc ataagccatt tttacattac ctagatcttg acgaaatcta tctttgtcta
    11881 atttttcatt actaaattta tcccaaaatc tacaactatc agggcttatt tcatcggcta
    11941 aaacaagttc attatcttta gttaaaccca gttcgatttt aaagtcaatc agccttaaat
    12001 ttttattgtc aaaaaatgga gttaaaatag agttaatctt tctagccata tttttaattt
    12061 cactaatttg agcttcattt tgcactaaat ttaaaatcaa acaatgctca tcattgataa
    12121 aaggatcgcc taaggcatca tctttaagac aaaattccac caaagcaaaa ggtagcacag
    12181 tgccatcttt aatgcccagt ctttttgtaa gagaacctgt tgcaacattg cgtactataa
    12241 cttcaatagg aacaatttta cattttttaa ccacttgttc tgtatcgctt atagtttcta
    12301 ccaaatgggt tttaatccca tttttttcga gcaaatgaaa aatttcagta ctgattttac
    12361 agtttaatgc gccttttcca ctttcattgc ctcttttttc tgcattaaaa gcagttaaat
    12421 catctttaaa ctcactaatt agtaaatttt catcatcagt tttgaaaagt tttttacctt
    12481 ttccttcgta aagcatttct ttttttgtca ttttattgtc cttgtttgat atttaaaatt
    12541 ttaatagtat caatagctga ttttaactgt gcgtcatcat tgatttgttt ttgactgatt
    12601 agatttttat tgtctttatt ttcttgttta tcttcttttt tatttttatc tattttttca
    12661 agctcacttt ctaaatgttg ttttaagtcg ctttctttta tagaaaaacc atcttcttga
    12721 gtatttactt tacctggaaa aacttcaata tcaggtttta cacccactgc ttgaatagta
    12781 cgcccgcttg gaagataata tcttgcaata gtaagcctta aagcttcagt tttattaata
    12841 ggtatgattt gctgaacact accttttcca aaagtatttt cacccacaat aacaccgcgt
    12901 ttaagatctt gtaaagctcc acttacgatt tcacttgcac tagcacttcc accatttaca
    12961 agcacaacca aagaagcatt agaaattttg tttttaggat cggctttata ttcttgattt
    13021 tcacttgcga tgcgtccttt ttgagaaaca ataacacctt tatctacaaa taaatttaca
    13081 agtcctatgg cttgatttaa aagtccacca ggattatttc taagatctaa aataactcct
    13141 ttaacattag gatatttttt aagttcttta cttgccacat ctacaacatt tttatcaaaa
    13201 tttgtaaccc taagataaag aatgttttca ttttctatca tttttgcata aacactttct
    13261 atcttaataa tttctcttgt aagtgtaaca tcaaaaggtt ttgttgcacc ttttctaaaa
    13321 atggttaaag tgatttgagt ttttggctta ccacgcattt tatctacagc atcattgaga
    13381 ttaattccta aagtggcctc atcattaatt tttaaaataa tatctcctga ttttatccct
    13441 gctttatctg ctggtgttcc ttctatagga gaaacaactg ttaaagcacc atctttcata
    13501 cctacggtta taccaaggcc gccaaattca ccattagttt gaattttcat atcattaaaa
    13561 tctttttcat ttaaaaaaga agaatgcgca tcaagattgc ttaaaagccc tgataaagat
    13621 ttatccacca aatcgctgat attttgatca tccacatagt attgctctac tatagcaaga
    13681 gtttttgtaa gcttatctaa agcttctagg cgtttttgaa cctgctcttc tttttgatca
    13741 actttagctt gtaaatgact tgttaaaaat agacataaaa tgaaagtagt agcaaagcct
    13801 gcaagacccg caaaaaatcg ttttgttttc aaaataagct ccatcattga gttttagttt
    13861 aattagttta aagagtaaat tttaataaaa attgcttaaa acttcgtaaa taaatttaaa
    13921 ttcttaaaaa tatgttaaaa tagactaaaa attccaaaaa gaaagttaat acaatgtgcc
    13981 aagaaaaaca tactcataca cattctcaaa aacatcttaa agcagtttgc aatcgtctaa
    14041 gtagaaccat agggcattta agcgctatta aaagaatggt tgaaaatgac aaagactgta
    14101 gtgaaatttt aatccagctt gctgccgtaa aagccgaagt taacaatact gcaaaaatag
    14161 ttttaaaaga acatttagct cattgtatgg tacatgctat agaagaaaat gatattcaaa
    14221 gtatagaaga attaaacaag gctatagata tgtttatgaa ataatctaaa attagtcatt
    14281 tgtcctatta tttaaaaaat tttactcaat taacttgaca ttatatgact aaagttatat
    14341 aatagcaagt atataaacta aataaaggat aaaacatggc aaatatacaa gattttttaa
    14401 ctgataatat gctttcaaat cttgaaagtg cagcatcttt agctatacat tctaaaaata
    14461 atgaagttgt acctttacat cttttatggg ctttaagcgt agataatgca agtattttaa
    14521 atcaaatttt aaataaatta aatatttcta aagaagcctt agagcttgaa attaaaagca
    14581 gaatttcaaa acttgcaacg agttcaaatg taaaccgtga aaatatacgc ttttccaatg
    14641 aacttataaa ttcattagaa aatgctaaag gattaatgag tgctaatgga gatagttatt
    14701 taagtgtgga tacttggctt ataagtgaaa gtcaaaaaag tcctattaaa gaaattttga
    14761 cgcaattttt agatttaaga gaatttcaaa aagagcttga aagtctaaga gcgggacgca
    14821 aaatcgatag caaaacaagc gatgaaacct tagacagctt aaataaattt ggtatagatt
    14881 taaccttaaa agcaagcgag ggtaaacttg atcctgttat aggcagagaa gaagaaatcg
    14941 aacgtttgat gcaaatttta atacgcaaaa ccaaaaataa ccctatactt ttaggtgaac
    15001 caggcgtagg aaaaacagct atagtagaag ctttagcaca aagaattatc aaaaaagatg
    15061 ttccaaaatc tttgcaaaat aaaaaagtta tcgctcttga tatgagtgct ttaattgcag
    15121 gtgcaaaata cagaggagaa ttcgaagata gattaaaagc tgtggttaat gaagtgataa
    15181 aaagtgaaaa tatcattctt tttatcgatg aaattcacac tatagtagga gctggagcga
    15241 gtgaaggcag tatggatgcg gcaaatattt taaaacccgc tcttgcaaga ggtgaactcc
    15301 ataccatagg cgcaactact ttaaaagaat atcgtaaata ttttgaaaaa gatgcagcct
    15361 tgcaacgccg ttttcaacct gtaaatgtag gtgagccaag tgttaatgag gctttggcta
    15421 tgttaagggg tataaaagaa aagcttgaaa ttcatcataa tgtaactata aatgatagcg
    15481 ctttagtagc tgcagctaaa ctttcaaagc gttatatagc ggatcgtttt ttacctgata
    15541 aggccattga tttaatcgat gaagctgcag ctgaactgaa aatgcaaatt gaaagcgaac
    15601 caagttcttt aagaaaagta cgcaaagata tagaaacttt agaagttgaa aatgaagctt
    15661 taaaaatgga aaatgatgaa aaaaatcaaa aaagactcga tgaaatcgca aaagaactag
    15721 ctaatttaaa agaaaaacaa aatgccctaa attcacagtt tgaaaatgaa aaaagtgttt
    15781 ttgatggcat aagtgctaag aaaaaagaaa ttgatctgct taaaaatgaa gcttctttgg
    15841 ctaaagctag aggtgaattt caaaaagcag ccgagctaga gtatggaaaa attccaagtc
    15901 ttgaaaaaga agtagaaatt ttagaagata aatggaaaaa aatgagtgaa aatggagttt
    15961 tacttaaaaa tcaagtggat gaggatttgg ttgctggaat tttaagcaaa tggacgggta
    16021 ttagcgtgca aaaaatgtta acttctgaaa aacaaaaatt cttagaagtg gaaaaacatt
    16081 taaaagaaag tgtcatagga caagataagg ccttaagtgc tttagctaga gccattaaac
    16141 gtaacaaagc agggcttaat gcggacaata aacctatagg aagcttttta tttttagggc
    16201 caacaggggt aggaaaaaca caatcggcta aagctttggc aaaattttta tttgatgatg
    16261 aaaaagcaat gattcgcttt gatatgagtg aatttatgga aaaacatagt gtttcaagac
    16321 tcttaggtgc gcctccagga tatataggac atgaagaagg tggagagctt actgaagccg
    16381 tacgaagaaa accttatagc gtgcttttgt ttgatgaagt tgaaaaagca cataaagatg
    16441 tatttaatgt gcttttaggg attttagatg atggtagagc aaccgatagc aaaggtgtaa
    16501 cagtggattt taaaaatacc attatcattc taacttctaa tatcgcctca agtgccatta
    16561 tgaatttaag tggaaaagaa caagaagatg cggtaaaaaa tgagttaaaa aatttcttta
    16621 aacctgagtt tttaaaccgt ttagatgata ttatcacctt taatccactt ggaaaagatg
    16681 aagcttatga aatagtcaag cttttattta aagatttaca aatgagctta gaaaacaagg
    16741 gaataaaagc aagtttaagc gaaaatgcag cccttttaat cgctaaagat ggttttgacc
    16801 ctgattttgg tgctagacct ttaagaagag ctatttatga tcttatagaa gataaattaa
    16861 gcgatatgat acttgctgat gaacttcatg aaaatgatag cattatcatt gatgcaaaag
    16921 atgatgaaat aatcatcaaa aaagcttaat cattttgaaa gtagatcttt ctactttcaa
    16981 aatataatct cgctttcatt aaatttcata tttgcttttg gtaatggtga tttggtggta
    17041 taataagcac tttctccttt ataatttcca cgataaactc cattaggaat gctaaatttt
    17101 ctagttgtat cagggaattt ttctatatat tgagttaaaa attctctaaa cacaggagca
    17161 gctgttctag ccccaccttc tgtataacgc ataggcttgt tgttatcatt tccataccaa
    17221 atgattgctt ctatttcagg cgtaagtcca caaaaccaag catcaacact tttattcgtt
    17281 gttcctgttt ttcctgctat ttctatatct tttactcttg cattacgccc tgtgcctttt
    17341 tcaacaacat ttctcatcat atctaaaacc agaaaacttt gcgcttcatc gctgacttta
    17401 cgctcattta agttaaattc catgatggtt ttaccggttt tatcctgaac ttgtctgata
    17461 atttgaggat ctttaatcgt accatagttc ccaaacatgg tataaaattt cgaatactcc
    17521 aaaggagaaa taccaaaact tcccaatacg attgataaat taggcggtat atctttaaat
    17581 ccaaattcca ttagcttaga gtaaagaaca tccagcccca tatcaagtgc gagattaatg
    17641 gtagctaaat ttcttgatct tgttaaagct tcttttaagg taattaaacc taaaaattta
    17701 cccccttcat ttttaggttt ccaatcctca ttattacccg ctccaccttc aaaaattcta
    17761 gaaatatcag caatttcact cataggcgaa tatcctaaat taatcgccac ttgatacaca
    17821 aaaggtttaa aagagcttcc aggttgacgc atactttgag tagcacggtt ataattactt
    17881 ttttcataat caaccccgcc taccaaagct aaaacatcac cactttgatg atttaccacg
    17941 accatagctc cgtttaaagt gcttaaattt gcatctttat cgcgttttac tatctcatca
    18001 taaccaaatt ttaaagcatt ttgcgccata ttttgaacat ctaggtctat atttaaaatg
    18061 attttatatc cacctgtttt taagtctttg atattagggc ttaattgttt aatcacttca
    18121 tctacaacat aaggagcagc attttgagta agcgtatcat cataaacttg cggaatttct
    18181 ttaatggctg tatcataatc tgcttttgaa atccaaccta gattatacat tcttgaaata
    18241 acattatttg ctcttgagat ggaaagatct aaatgctttg taggatcata actgctaggt
    18301 gcttttggca tacctactag catagcaatc tctttaaggc ttagttcatt taaattttta
    18361 tgaaaatacc ccaaagctgc ggtttttact ccataatacc catgtccaaa aaaaataaaa
    18421 tttaaatacc tttctaaaat ttgctcttta gttaaaatgg tttccatttt ataagcaagc
    18481 aaagcttcgc gaattttacg cgtaatagtt ctttcagggg ttaattccgt gtttttaata
    18541 aattgctggg taagagtgga agctccttcc atggtttttc caccgctttt tatgattttt
    18601 acagcagctc taaaaatggc gtcgatatta actccattat gttcaaaaaa gcttgtatct
    18661 tctatagcaa ccaaagcttc tataaggcgt ggaggaagct cttcataagg agcgtaaaaa
    18721 cgatgttgtt caaaagtatt agccacaagc ttgccatttc tatcgtaaat ttgtgttgta
    18781 agaggaggtt tgtattcttt aaaagtataa ccctcagtat cagcacttgt gaaaagataa
    18841 gccacataaa taaatccagc tataaacaaa agagtaaaaa atgaaaaaat atattttaat
    18901 attttcataa ataagccttt aaagtttgga tatcaagccc taaagcagtg cttagatttc
    18961 ctacttgttg ggtgatgaaa ttttgatgaa aaccctcaca cataatacaa cccgccttgc
    19021 ctttataaag atcattttct acataatctc ttaaagcatt ttcatcaaaa tttttaaaat
    19081 aaagtgtagt ttttgaaaga gaaaaaactc ttttttcagg ttttacaagc aaaaaagccg
    19141 ataaaatact tgcatacttt ccattttgca aggcaagcat ttcataagct tcttttttat
    19201 cctttgcttt ggtaagaatt ttttcatcta tacaaactat actatctgca aaaagcaaat
    19261 tttggttttg aaaatctttg cctaaagtac ttaaaaattg tctttctttt tcaagaacta
    19321 ttttttgaac atataaaaaa ggtgaaatat ttttatttaa attttcatca taatcaaaac
    19381 taacttgcct aaaatcaatc tttgcggttt taagcaagtt agctcttgaa atggaacttg
    19441 aagcaagaat taacattaaa gtgctttttc tatcgtttct aagctttgtt ttaaagcttc
    19501 attgattttg cttaaatctt ttccacctgc agtagcaaaa tcatctcttc cgccaccatt
    19561 tccacctaaa atttgcgccg cttctttaac caaagctcct gcttttaaag gcacatcttt
    19621 aacgccagct gctaaagtga ttttttcatc ttttacttgg ataagtaaaa tcaccgcttt
    19681 agcaaatttg tttttaaaat catcaatcat agctttaata tcaccattat ctatacgttt
    19741 tacgcaaatt tcaacacctt ggatattttt agaatcaagc tcggttttac ttgaattttt
    19801 aagctcattt tttaaactta aaatttcatt tttaagcttt ttaatcccgc ttaaaatatc
    19861 attattttta agttcatctt ttactttaga aagttcttcg agttgatttt ttacaaattc
    19921 taaagccgct ttagaaacca cagcttcaat acgtctaact ccagcactca caccactttc
    19981 tttaactatg taaaaacttc ctatttgagc agtattttta acatgagttc ccccgcaaag
    20041 ttctttgctt tcacctagag ttaaaacacg cacattgcct tggtattttt cattaaacaa
    20101 tgctatagca ccgctttttt tagcttcttc taaaggcata ttttctaaga tagcttcgct
    20161 tgagtttata atcattttat tgactctttt ttcaatgctt tctagctctt ctttgtttaa
    20221 agctttatga tgagtaaaat caaatcttag tttattgctt tcaaccaaag atcctgcttg
    20281 gcttacatga gaacctaaaa tttctcttaa agcatgatgt aaaagatgag tggctgagtg
    20341 gtggcgtgcg atttgctctc ttttttctgt atcgattctt gcatgaacta tatcgttaac
    20401 ttttagttct tcgcctgctt ttataaagct aagattgaga ttaaaaaact tttgcgtatc
    20461 taaaacttca cgcttagcta taaatccact atcagcactt tgccccccac ttgttgcata
    20521 aaaaggtgtg ttttcaagca tcacccaacc cgcatcttta agggtggaaa cttctttaaa
    20581 atcttcatct aaaagggcta aaattttact ttcgcattct gctttttcat aacctacgaa
    20641 atgattttct ccaaattttt caagtaagtt tttaaaatct ccgcttgcag ttttatctcc
    20701 acttcctttc caagaagcct tagcgcgtgc tttttgctca ttcatgaaaa gttcaaattt
    20761 ttcttcatca actttaagat ttttttctct tagcatatca gccgttaaat caagcggaaa
    20821 accataagta tcataaagct taaaggctac ttctccgcta aaaatttctt tagtgttttt
    20881 aagctcttca ttaaaaattt caatcccatt ttctatagtg cttaaaaatc tttcttcttc
    20941 aaggcgaatt tgttctttta caaagtcttt tttctcatta agataggtat aatgtccgcc
    21001 cattaaatcg cacacaatat caactagttt atacataaaa gcttgtttaa aacctagcaa
    21061 atatccatgt cttaaagcac gacgcaaaat acgacgcaaa acataacctc taccttcttt
    21121 atcaaaactt accccttgtg caagcaaaaa tacacttgat cttatatgat cagctatgac
    21181 tctaaaactt gctccgcttt cataaacata agttttatta caaagttttg aaatttcatt
    21241 gatgattggc ataaaaagcg agctatcaaa attgctaaat ttaccttctt taatcgctgt
    21301 taccctttca agccccattc ctgtatcaat gcttggcttt ggcagtgggc taagcactcc
    21361 atcagcactt ctttcgtatt gcataaaaac aagattccag atttctaaaa atctatctcc
    21421 atctccgccc atataatctt cgcttgagtt aaaatgctct tgtccttggt cataaaaaat
    21481 ctcactacaa ggaccacaag gaccagtatc gcccatttgc cagaagttat ctttatcgcc
    21541 aaatttgtaa attctttctt tttgaatgtg tttttgccat agattaaaag cttcatcatc
    21601 gttttcatgc acggttacat aaagtttatc tttaggtagt tttaaaactt cagttacaaa
    21661 ttcccaagca taagctatgg cttgttcttt aaaataatct ccaaaactaa aattcccaag
    21721 catttcaaaa aaagtatgat ggcgtgcggt atagccaaca ttatctaagt cattgtgctt
    21781 tccacctgct cttatacaag tttgacagct tgttttgcgt ggagggtttg ggcgtggaat
    21841 ttctcctgta aatatacttt taaaaggcac catgcccgca ttggtaaaaa gtaaagttgc
    21901 atcatcagga actaaaggac ttgacggggt tatctcatgt ccttttgatg caaaaaaatc
    21961 caaataagct tttctaatat ccatgaattt tcctaaagaa atttttataa aaacatatca
    22021 taccaaaatt actttaaatt aagtaaaact aaaatacaat aaacattttt atttaatttt
    22081 atttctctaa ggttttttat gaattttatc aatcttcaag cccaatatct cgcatacaaa
    22141 gatgaaatca atgctgaaat tgaaagcgtt ttatcaagct cttctttcat aggcggtgca
    22201 aagcttaacg aatttgagca aaatttagct catttcttag gtgttaaaca cgctataggt
    22261 tgctcaagtg gaactagtgc tttatacctt gccttaagag tcttagatat tggtaaagat
    22321 gatgaagtta tagtgcctag ttttactttc atagcaacag ctgaagttgt ggccttggta
    22381 ggtgcaaaac ctgtttttgt agatataaat ttatcaaatt acaatcttga ttttaaagca
    22441 gtgcaaaaag caataactcc aaaaactaaa gctgttatag cagtgagtat gtttggacaa
    22501 atgagtgatt taagggcttt agaagaaatt ttaaaagata aaaatatcac tttgatcgaa
    22561 gatggtgcac aaagttttgg cgcaagtttc aaaggagaaa aatcctgctc tatagctaaa
    22621 atttcatgca caagcttttt tccttcgaag cctttgggag cttatggcga tggcggggct
    22681 attttttgcc atgatgatga aattgctaaa aaaataagaa ttttactcaa tcacggacaa
    22741 actcagcgtt ataaacatga atttataggt ataaatggac gccttgacac cttacaagca
    22801 gcgattttaa atgttaagtt aaaataccta gaaaaagaat tagacaaaag acaaaaatta
    22861 gcacaaattt ataatgcaaa tttaaaaaac tgccaaattc cacaaattaa tccaaatgct
    22921 tttagtgctt atgcacaata cagcgtttta gttgaagata gagctagtgt attgcaaaaa
    22981 tttgaaaaag ctaatatacc ttatgctata cactatccaa cccctttgca taaacaacct
    23041 tgctttagtg agttttcaaa tttagaactt aaaaattcag aatacgcaag cgaacacatc
    23101 ttatctttgc ctttttcacc ttttttaagt gaagaagagc aagagcaagt tatttgtatt
    23161 tttaaagatt gattccatga aaataggtat cataggcctt ggaaaaatgg ggcaaaacca
    23221 cttaaatgaa cttagtaaaa attctcattt taaacttaat gcactttttg atctttgcaa
    23281 aaatccaaac ctaaatattt ttgatgatat tttttatgat gatttggata aatttttaaa
    23341 tcaaaataat gatattatca tcatagcaac acctacaaat tcacatttaa caatagcaaa
    23401 aaaagttttt aaacaatgca aatgcgtttt aatcgaaaag cctttagctc taaatttaaa
    23461 agaaatagac gaaatttcaa atttagctaa agaatacagc ataaaagtag gtgtaggttt
    23521 ttgcgaaaga tttaatcctg cggttttagc cctaaaaaaa gagcttgaaa atgaagaaat
    23581 tatcagcatt aacatacaaa gattttcacc ctacccacaa agaatcagcg atgtagggat
    23641 tttgcaagat ttggctgtgc atgatcttga tttgctttgt tttttaagca aacaagaaat
    23701 aacaaaaacc aatttgctta aaaaatacac ccaagatcaa acaagagaaa gtgaaagcat
    23761 tattctatgt gagcttgaaa aatgtattgc cagcatacat caaagttgga atagcacaca
    23821 aaaactaaga aaaattcatc ttattactaa aaatcatttt tatgaagcca atttaaatga
    23881 cttttcttta ttaaaagatg gaaattttat agaacttact caacaaagtc cacttttttc
    23941 agaacacgaa gctttgttaa aacttatcga taatcaaccc aatcatttag ccagcacgag
    24001 cgatgcttac aaagttcaag aaattttaga aaggtttgcg tgaaattagt tttattttta
    24061 aatatgggcg gagctacgaa tttacaagat tgtgaagttt ttttaaaaaa tatgtttaat
    24121 gatccttata ttttaggaat caaaaatcga tttttaagaa aatttgtagc atggatcata
    24181 acaaaggctc gcgttaaagc catgcaagaa aactataaaa aaatgggcgg aaaatcccct
    24241 ttaaacgaac ttactcaaag cctgtgtgac aagcttaatt taaaacaaga tgaatttaaa
    24301 tttgattttg taaatcttta tgttcctcct tttgccacag aaattttgca aaaatacact
    24361 ttaaatgcaa gtgatgaaat cattcttttt ccactttatc cgcaccattc ttgcaccaca
    24421 gtaacttcat ctttagaagt tctgcaaaat gaaatttcaa agcaaaaaat tcaagcaaaa
    24481 gtaaaaacta tagatatttt ttacaaaaat gagctttata acgagatgat agtttcgcac
    24541 attttggcta aaaaaagtaa atttgatgcc aaaattttga ttttttcagc gcattcttta
    24601 ccacaaagca ttattgataa aggtgattta tatgaaaagc atgtaaatga tcatgtagaa
    24661 attttaaaag aaaagctaaa agatcatttt gatgaattta ttttagctta tcagtctaaa
    24721 ctaggccctg taaaatggct tgaaccaaat acaagcgatg ttttggcaaa tttaaacgat
    24781 aaagctctga tttaccctat ttctttttgc attgattgtt ctgaaacgat ttttgagcta
    24841 ggtatggagt ataaacattt agcaaagtgc gattatgatt taatcacttg cccaaatgat
    24901 agtgatgaat ttatccactt tattttaaag tatttgtctg attttaatta agaatgattt
    24961 tgaagtcctt gtttatgatt acaaggactt tttagtaaaa atttagccaa ctaagctaaa
    25021 gtataagctt tttctccgtg caaactcaca tctaagcctt tttgctctac ttcttctttt
    25081 actcttaagt ctgtaaaaca agagataatc ttaaaaataa caaagcttat aagagctgac
    25141 aaaaccacac aaatcacaat agcaaaaatt tgctctttta aaagttccaa acttccgctg
    25201 ataaaaaatc cctcgccaag tgcattttgg gcaatcacat taggatttac tttagcactt
    25261 gcaaaaaacc ctgtggcaat tcctccccaa atacctccga ttccatgtaa agaaaaggca
    25321 tctaaagaat catcccattt gagtttgtat ttaataaaac ttaaaccaaa ataacaaaac
    25381 acagaagaca aagtccctat aacaagagaa gcataaatat ctacataacc gcaagctgga
    25441 gtaattccca caagccctgc tacaagccca ctaagtccac ctaaaatagt cggtttttta
    25501 tggatgagcc actcaagtac cacccaagat aaaaagccgc aagctgctga tataatactt
    25561 actataaaag cattgatagc aatatcattc atttcgccag cacttccagc attaaaacct
    25621 aaccatccta taaaaagcaa aatcgcacct aagaaagcat aaggaataga atgcgcgttt
    25681 ttatcctcat catcactttt tctagcgcct accatcaaag ctcctacaag tccagcaacc
    25741 ccagagctaa tatgcacaac accgccccca gcaaaatcaa gacttcctct tttaagcaaa
    25801 aatccctcac tgctccaaat catatgtgct aacacatcat aaactaaagt actccaaaaa
    25861 agtagaaata tcaccaaaac acccagttta attcttccca ccaaagagcc tgttatgatg
    25921 gcagatgcaa taagtgcaaa catcatttga aaaatcacaa aaagaatatt tggaacgcct
    25981 gaagcgttgt atccgctaat accctctaag aggaaattct cgaaatttcc tacaagccca
    26041 agtccttcat ctttaccaaa agaaagacta aatccaagca ctacccattg taaagtaata
    26101 acaccaaaaa caataaagca attcattata gtattaagag tatttttact tcttaccata
    26161 cctgaataaa acattgccaa agctggagtc ataagcaaaa ctagcaaagt acacaacaca
    26221 ataaaacttg aatttatcgc attcatttac ctgtcctttc ttacaaa
//
LOCUS       DBBXPZ010000016        26156 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.016, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000016 DBBXPZ010000000
VERSION     DBBXPZ010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 26156)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26156)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26156
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.016"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(135..220)
                     /locus_tag="ACJFD7_000520"
     tRNA            complement(135..220)
                     /locus_tag="ACJFD7_000520"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(184..186),aa:Leu,seq:gag)
     gene            complement(255..593)
                     /gene="atpE"
                     /locus_tag="ACJFD7_000521"
     CDS             complement(255..593)
                     /gene="atpE"
                     /locus_tag="ACJFD7_000521"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HGG0859362.1"
                     /translation="MKKVLFLLLACAAVAFAAETNAPVEQEAINVWIKAFSVLAAGLG
                     LGVAALGGAIGMGNTAAATIAGTARNPGLGPKLMTTMFIALAMIEAQVIYALVIALIA
                     LYANPFIVLQ"
     gene            833..2167
                     /locus_tag="ACJFD7_000522"
     CDS             833..2167
                     /locus_tag="ACJFD7_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HGG0859363.1"
                     /translation="MSSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYI
                     ILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSNKKAWSYVGFTMVGAILIVSFYT
                     LVIGWIVKYVFLSITGNLPMDLEVSKAQFGFFISEDFLSQFICFTLVFLCVFYIVSKG
                     VKNGIEKLNVWMMPSLFILLILMLVYAISKDGFIMAVKFLFVPDFSKINTSNVLEALG
                     LAFFSLSLGVGTIITYSASLPDKTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYN
                     PNQQGPGLVFISLATLFEKIGVIGCIFGAAFFISLIFAGITSAISMIEPFTFYLINTF
                     GMSRKKALILIGIVVYILGMLCILSSLKSTQFGFFGMSFFDLLDSVSSKVIMPLGGIL
                     AAIFVGFVMKKEALKILFKPYMRGIFFELWYVFLRFISPLAVVIVMIAAFLK"
     gene            2180..3520
                     /locus_tag="ACJFD7_000523"
     CDS             2180..3520
                     /locus_tag="ACJFD7_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HGG0859364.1"
                     /translation="MRTYFSKIGFVLAVAGGAVGLGNAWKFPTLSAENGGFVFVLLYL
                     FFTLTIGFSIFLAEVAMGRLSKSDLANAYSNLAIKYGNRWRYGGVFMLGGIFILSFYL
                     VIMGWVLKYTVVSLYYLPKTLDEAASNFQNLITTNLTSSVFFFTLSFFLTLLIVSKGL
                     IKGIEKLNVVIMPSLFLMLVFMLFYCMGFKQGFANAFSYLFYPDFSHFKFSSIAEALG
                     LAFFTLCLGIGCIVTYSSALDKKTNFIKSSVYIVLINLLISFIMGLIVFTFIFEFGAD
                     PHTQGAGIVFVSLMSLFNQLGALGYIFAFCFFLALFFAGITSAISMIEPLTFYMINNY
                     QISRVKALFLIGLFVFVFGICCILSLNLNFFSMFSFFGKDFFTLLDKLTSNFLLPLGV
                     IVCSIFVGFFMNKKQIYKIFSKFISRKIFLIWLFFIRFISPIAIILVMCYQIFV"
     gene            3552..5351
                     /gene="pycB"
                     /locus_tag="ACJFD7_000524"
     CDS             3552..5351
                     /gene="pycB"
                     /locus_tag="ACJFD7_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HGG0859365.1"
                     /translation="MAKKFIDVMDTSFRDGFQSVYGARVLMDDFFPAVEAAKEAGITH
                     FEFGGGARFQSLYFYLNEDAFTMMDRFRAIVGKDANLQTLARGVNTVTLDTGNSELID
                     LHAKLFAKHGTTTIRNFDALNDVNNLKFSGECIVKHGLKHEITITLMDLPSNCKGAHD
                     VPFYEKILKEILTAEIPFHSICFKDASGTSNPNKIYKTIKMARKILPQDTHIRLHTHE
                     TAGVSIACYLAALEAGVDGIDLAAAPVSGGTSQPDILTMMHALKGKDYDLGGLEEEKI
                     LRYEEVLKDCLKEYFLPPEATMVNPLIPFSPMPGGALTANTQMMRDNNILDKFPQVIH
                     AMREVVEKGGFGTSVTPVSQFYFQQAFNNVMFGPWKKIAEGYGKMVLGYFGKTPVTPD
                     ANIVELASKQLNLEPTTELAINIADKDESKSIAYTKTLLEKEGIETSEENIFIAAACK
                     EKGIAFLKGEAKVNIRKLASMPKPMSVDENKFTVAVNGNKYHVEVSYGFDKDVNVKSV
                     KKVEENKNIISSNSTSSVDAENEILAGISGNVFKIYVNEGEEVKSGQAIMVLEAMKME
                     IEVNAPKDGIISELCIKIGDTVNEGEVLAIYKN"
     gene            5364..6938
                     /gene="pckA"
                     /locus_tag="ACJFD7_000525"
     CDS             5364..6938
                     /gene="pckA"
                     /locus_tag="ACJFD7_000525"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004612 - phosphoenolpyruvate
                     carboxykinase (ATP) activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HGG0859366.1"
                     /translation="MKKFDKLGLDNIKEIFHNLSYDELNAHEKANNEGLSTDNDTFCV
                     DTGIFTGRSPKDKYFVKQDPSSKYIAWGKVNQPITKELFDKLLTKAKQELSGKKIYVQ
                     DVFCGASLQSRKAVRFVTEIAWQAHFVKNMFIRPSQEELENFKADFIVYNACKCINED
                     YKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANV
                     GEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLDPE
                     HEPEIYGAIKRNALLENVVLRADKSVDYADASKTENTRVSYPIEHIENHEPSLKAGHP
                     KNIIFLSADAFGILPPVSKLSKEQAMYYFLSGYTAKVAGTERGITEPQATFSACFGEP
                     FMPLHPTVYARLLGEKIEKHEVNVYLVNTGWSGGSYGVGKRMSIKATRACINAILDGS
                     ITKCEFENFEVFDLAIPKALEGVESVLLNPINTWLDKNAYIATRDKLAHMFIQNFKRY
                     EDVKEGIEFSKFGPKI"
     gene            6948..8330
                     /gene="argH"
                     /locus_tag="ACJFD7_000526"
     CDS             6948..8330
                     /gene="argH"
                     /locus_tag="ACJFD7_000526"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HGG0859367.1"
                     /translation="MKNEMWSGRFSDASDELLKEFNASLNVDKTLFNEDIQGSIAHAT
                     MLESCGILKKEELDAIIKGLEQVRSEIEQGKFIFDIKDEDIHMAVEKRLSEIIGSEIG
                     GRLHTARSRNDQVATDFKLFVKKSHIELIKLLKELIQTMLEHAKVHKKTIMPSFTHLQ
                     HAQPVSFSFYILAYAFMLMRDIKRLQNSLELADFSPLGSCACAGTSYRTNRELSAEIL
                     GFKDIMLNAMDGVSDRDFALDLLYDIAVIFTHTSRLCEEMILFSSSEFSFITISDSFS
                     TGSSIMPQKKNPDVCELIRGKTGRVYGNLISLLTIMKALPLAYNKDIQEDKEGIFDSV
                     KTAKDSLIILNAMLKEIQINKENMLNACKKGHLLATDLADYLVREKNIPFRKAHFIVG
                     NVVAQAEAQGIDISEIKDLSKIDPIFDEKAMELLNFEFSLNSKQSEGSSSIASVEKQI
                     QILEGFIQNL"
     gene            complement(8352..9455)
                     /gene="ychF"
                     /locus_tag="ACJFD7_000527"
     CDS             complement(8352..9455)
                     /gene="ychF"
                     /locus_tag="ACJFD7_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HGG0859368.1"
                     /translation="MSLSVGIVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAM
                     VEVPDLRLNELAKIVKPERIMHSLIEFVDIAGLVKGASKGEGLGNKFLSNIRETEVIL
                     HIVRCFDEENITHVEGGVDPLRDVEIINTELILADIEQLSKKIEKLTKEAKANQKGAK
                     ESLELANSLLDHLNKGLAASSYPEKESEIYQALIKELRLLSAKEVIYGANVDENGISE
                     DNDYVKALKEYAKKNDHEVIKLCAKIEEELVGLSDEESHEFLSSLGVNESGLDQIIRT
                     AFAKLGLISYFTAGVVEVRSWTIKKGWKAPKAASVIHNDFEKGFIKAEVISYEDYIQY
                     KGENGTKEAGKLRLEGKDYIVLDGDVMHFRFNV"
     gene            complement(9452..10903)
                     /locus_tag="ACJFD7_000528"
     CDS             complement(9452..10903)
                     /locus_tag="ACJFD7_000528"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HGG0859369.1"
                     /translation="MKFELNDKKLDAIKADFELVFIQDKNLKIFNKEKDFFKLNNYKG
                     EGTLLDLNNKKLYLELKSLAYEDIRLSLCTAYKTLEKLNIKSVKLPSIIGDCVVRSFA
                     SLVEGVLFGAYKFDKYKSEKKTSTLEKFIISSEELNGKKFNKDEAKIGLERGEILANA
                     TNFTKNIVNEIPEIYTPLKMAKDAQNLAKENKNITCKIYDEKFLAKEKMNAFLAVNYA
                     SVHPPRLIHLSYKAKNAKKRVVFVGKGLTYDSGGLSLKPADFMLTMKADKSGAAAAMG
                     IIKAVAELALDLEVHCILGATENMIGGNAYKPDDVLISREGVSIEVRNTDAEGRLVLA
                     DCLSFAQDLKPDLLIDMATLTGACVVGLGEFTSAIMGNNEELQNDFYLSSKKSGEYTT
                     ILHFNPHLRELIKSNIADVSNTASSRYGGAITAGLFLDKFIRKEYKDKWLHLDIAGPA
                     YTEKSWGYSSFGAGGAGVRMCVNYLIQILRKAK"
     gene            complement(10900..11496)
                     /locus_tag="ACJFD7_000529"
     CDS             complement(10900..11496)
                     /locus_tag="ACJFD7_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HGG0859370.1"
                     /translation="MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHV
                     NLGFVIFIAGLGGFVGDQIYFYIGRYNKRYIQKKLKTQRRKFAVAHLLLQRFGWPIIF
                     IQRYMYGFRTIIPMSIGITRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTW
                     TEEHWYYAAIIIIAFLSLLLFGFKQMEKAILKDKRKKS"
     gene            complement(11515..12063)
                     /gene="apt"
                     /locus_tag="ACJFD7_000530"
     CDS             complement(11515..12063)
                     /gene="apt"
                     /locus_tag="ACJFD7_000530"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003999 - adenine
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0006168 - adenine salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HGG0859371.1"
                     /translation="MIKLTQEEKKYLLDSIRIIPDFPKKGIIFRDITTLLNNKEALNF
                     LLRHLKERYKDYNLDFIAGTESRGFIFASMICAKLNLPFVPIRKPGKLPFETFSCEYD
                     LEYGSDKVELHKDAFKNIQNARVLLVDDLIATGGTAIASYELIQKAGAKCVEACFLMN
                     LKDLNGANKLEKLTSVYSVLEI"
     gene            complement(12060..12392)
                     /locus_tag="ACJFD7_000531"
     CDS             complement(12060..12392)
                     /locus_tag="ACJFD7_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859372.1"
                     /translation="MFTNWLVLTILICATIYLIVMLFYYKTLLNKEKTSKDFIKNNLD
                     DTEIVIRKLQIQLQRSLGNIDILTEELNKIKADLTSLRTRNSQYRLENDKLRQRIKEL
                     EAKIEALL"
     gene            complement(12392..12829)
                     /gene="rpiB"
                     /locus_tag="ACJFD7_000532"
     CDS             complement(12392..12829)
                     /gene="rpiB"
                     /locus_tag="ACJFD7_000532"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HGG0859373.1"
                     /translation="MLREKIYIASDHAGFELKEKICVFLKEKNIIFNDLGTNTCASCD
                     YPDYAHLLAEKINKRSFGILICGSGIGISIAANRHKNIRCALCHESLSAELARKHNDA
                     NVLALGGRLIGVELAIDIIEKFIQTPFEEGRHMQRIQKIEVKI"
     gene            12995..13549
                     /gene="cheB'"
                     /locus_tag="ACJFD7_000533"
     CDS             12995..13549
                     /gene="cheB'"
                     /locus_tag="ACJFD7_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CheB methylesterase domain-containing protein"
                     /protein_id="HGG0859374.1"
                     /translation="MKLILIGSSTGGPNQLKFLLKDIDVKNTCVVIAQHMSASFIPSF
                     VGQFNKEAFSEVCLLNDKEILSNKIYICPKNTILSGNLNIVAAWQDVASSFKPSVDLL
                     FHSAVSLAKTNKILAIILTGMGDDGAKGLFELYKTGVRCLCENEADSVVYGMPKRAKD
                     MNPHLKPMSLKEIKKEIVNFIDQD"
     gene            13565..14353
                     /gene="cheR"
                     /locus_tag="ACJFD7_000534"
     CDS             13565..14353
                     /gene="cheR"
                     /locus_tag="ACJFD7_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CheR family methyltransferase"
                     /protein_id="HGG0859375.1"
                     /translation="MEKKITPSELELNEFIKIINEMSGIDLTDKKNILALKLNKFLEG
                     TNTKNFSEFLGKLKSNRQLKQETLDFVTIGETYFLRELAQLKEIIYYAKSLEKRVNIL
                     SAPCSSGEEVYSLALLAVQNFIKDMYILGVDINSSVIEKAKLGKYQGRTLQRLSESEK
                     RRFFLESEDKFYTINKNELCTCKFELCNVFEEKFSRLGKFDIIASRNMIIYFDHESKL
                     KLMERFHRILNDKGRLYVGNADLIPETIYFKKIFSPRGVYYEKV"
     gene            14489..15217
                     /gene="pebC"
                     /locus_tag="ACJFD7_000535"
     CDS             14489..15217
                     /gene="pebC"
                     /locus_tag="ACJFD7_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HGG0859376.1"
                     /translation="MIELKNVNKYYGTHHVLKNINLSVKEGEKLVIIGPSGSGKSTTI
                     RCMNGLEEVSSGEVVVNNLVLNHKNKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPM
                     KLQKKSKKEAEETAFKYLKVVGLLDKANVYPATLSGGQQQRVAIARSLCTKKPYILFD
                     EPTSALDPETIQEVLDVMKEISHQSNTTMVVVTHEMGFAKEVADRIIFMEDGAIVEEN
                     IPSEFFSNPKTERARLFLGKILKN"
     gene            15239..16018
                     /gene="peb1A"
                     /locus_tag="ACJFD7_000536"
     CDS             15239..16018
                     /gene="peb1A"
                     /locus_tag="ACJFD7_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adhesin/ABC transporter
                     aspartate/glutamate-binding protein PEB1a"
                     /protein_id="HGG0859377.1"
                     /translation="MVFRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGV
                     KNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSV
                     DAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKNYKSLADMKGANIGVAQAATTK
                     KAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDS
                     FEPQSYGIVTKKDDPAFAKYVDDFVKEHKNEIDALAKKWGL"
     gene            16020..16772
                     /locus_tag="ACJFD7_000537"
     CDS             16020..16772
                     /locus_tag="ACJFD7_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HGG0859378.1"
                     /translation="MNESVGFVEHLRQILTSWGLYDENSISPFAVWKFLDALDNKDAF
                     INGFIYTLEVSILALLIATIFGTIGGVMATSRFKIIRAYTRIYVELFQNVPLVIQIFF
                     LFYALPVLGIRLDIFTIGVLGVGAYHGAYVSEVVRSGILAVPRGQFEASASQGFTYIQ
                     QMRYIIVPQTIRIILPPMTNQMVNLIKNTSVLLIVGGAELMHSADSYAADYGNYAPAY
                     IFAAVLYFIICYPLAYFAKAYENKLKKAHLTR"
     gene            16783..17442
                     /locus_tag="ACJFD7_000538"
     CDS             16783..17442
                     /locus_tag="ACJFD7_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HGG0859379.1"
                     /translation="MENVFNAQNIEFLMQGLFLTLKIALATCIISIVFGTFLAITKNY
                     GDRLSKFLAACYIDIFRNTPLLLWMLAACFVLPVFFGQFPQAFWGTIGFSLYTSSVMA
                     EIIRGGLNSIPKGQFEAAYSQGFGKFFTLFYIILPQTFRKIIPALLSQIVTTVKDTAY
                     LAGLGIAELTYNSKTILAKLTSFEEILAMIGVVAGIYFIICFSLSMLVRYYAKKTAYI
                     S"
     gene            17550..18479
                     /gene="prsA"
                     /locus_tag="ACJFD7_000539"
     CDS             17550..18479
                     /gene="prsA"
                     /locus_tag="ACJFD7_000539"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009156 - ribonucleoside monophosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009165 - nucleotide biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HGG0859380.1"
                     /translation="MRGYKIFSGSANVEFARQVSKYLSLPLSDAGVKRFSDGEISVQI
                     DESVRGKDVFIIQSTCAPTNDNLMELLILTDALRRSSANSITAIIPYFGYARQDRKAN
                     PRVPITAKLVANLIQAAGIDRVATIDLHAGQIQGFFDIPVDNLYGSIVFNDYIKAKHF
                     KNAIIGSPDIGGVARARSVAKHLGLDIVIVDKRREKANESEVMNIIGDVKDKEVILVD
                     DIIDTAGTIVKAAEALKEKGAKSVMACCTHAVLSGKAYERIASGVLDELVVTDTIPLK
                     EQLPNIKVLSVTPVFAEVIRRVYHNESVNSLFI"
     gene            18646..20757
                     /gene="cstA"
                     /locus_tag="ACJFD7_000540"
     CDS             18646..20757
                     /gene="cstA"
                     /locus_tag="ACJFD7_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009267 - cellular response to starvation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation CstA family protein"
                     /protein_id="HGG0859381.1"
                     /translation="MTQLSTKILWLFVATLGAICFGYLALQNGESVSAIYLVVAAVCI
                     YMIGYRFYGRFVAYKVLELDKNRATPALVENDGRDFVPTNKAVLFGHHFAAIAGAGPL
                     VGPILAAQMGYLPSMLWILVGGVLAGAVHDFVVLFISTRRKGRSLGEMIKDEMGKFTG
                     GVAMVAIFGIMLIIIAILAMVVVKALAESPWGLFTIAMTIPIAIFMGIYMRFIRPGRV
                     GEASIIGFVLLILAIHYGSVIAADPYWAKIFTLEAPTLAIVMMAYGFIASVLPVWFLL
                     APRDYLSTFLKIGVIVVMAVAIVLVAPDLQMPKANTQYFDGTGPVFAGGVFPFLFITI
                     ACGAISGFHALISSGTTPKMLENETHTLAVGYGSMLAESAVAIMALICACILHPGLYF
                     AINSSSALIGTDVVNVAQTISSWGFSIAPEEITTLTTNIGEHTILSRTGGAPTFAIGV
                     ALILHELFGGVDLMAFWYHFAILFEALFILTAVDAGTRACRFMVQDILGNVYKPLGDI
                     HNYPAGLLATALSVAGWGYFLYQGAIDPKGGIYTLWPLFGVSNQMLAGMALLLATTIL
                     VKMGKARYTWVTLVPAVFVLVATLYGGIQKIMPYEEGNKIANAVSHVAAVSIQSQKIK
                     DLEFKLNNTKDEKEISTIRKEISIATQNKVGNLLNAILCVFFMIATLLVIISCIGICL
                     GKIKIPLKETKYIKIDEFQKI"
     gene            20738..20935
                     /gene="kcuS"
                     /locus_tag="ACJFD7_000541"
     CDS             20738..20935
                     /gene="kcuS"
                     /locus_tag="ACJFD7_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_148936501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KCU-star family selenoprotein"
                     /protein_id="HGG0859382.1"
                     /translation="MNFKKFKYYYEKAERFFHPLVGLSSYDKYLEHMKQKHPGKIPKT
                     RGEFFKECLDKKYNSGGLNKC"
     gene            complement(20975..21388)
                     /locus_tag="ACJFD7_000542"
     CDS             complement(20975..21388)
                     /locus_tag="ACJFD7_000542"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - fatty acyl-CoA hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HGG0859383.1"
                     /translation="MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAAREL
                     SPERVVTISMDKVVFKEPVFIGDIISCYSKVVNVGNTSISVEVEVTAQRVDSQGCTSC
                     INVTSALVTYVSVTRDGKKKPISEELKRIHGFLNA"
     gene            21450..23282
                     /gene="ciaB"
                     /locus_tag="ACJFD7_000543"
     CDS             21450..23282
                     /gene="ciaB"
                     /locus_tag="ACJFD7_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein CiaB"
                     /protein_id="HGG0859384.1"
                     /translation="MNNFKEIAKLVRKYKERNNALYEFLDKEDVGEYFRSLISLSELK
                     QDKTTMLAILRRLIDLKEENLVQEWKKNNFKEDKIIELKHKFYEEVRKFYEKEHQNLI
                     NEIKEKKLLNNFYQSLIQGVHNIGLIMNIFEISWTKEIIEKNNKILSTQFPNLDDAME
                     FLRKNHLYQKTPEGEICERSYGVLVRIGNLWKFVPYARFFENEILKLEFAFENMIDQL
                     KIFASSEEEKAYIEYFEKLKLAFCEKDEDRVIKAWQEAEFAWMKVKSPLQVGHPLEYY
                     EDNYTHAVALEWDIRIEDENDFDVLKFGNEIKESFEHVYKNIGLEDCELEKEVLSNIE
                     KTQLYICTPMIFYGAELKGLFSAQVVPNDEFVSSKAGKKIFAFINFVYENAKTKPFMK
                     ISSEIFDKEFLDFGRNILFYQEKIWKRVYEVSTIGHEFGHIFFIANDTEKTMNQSGFF
                     KNIEEYKATTGGLINFFYHEQDDLIMPVFHELIKRAIGLISWQRVDEVRPYYTEGLIH
                     LSLLFESEVLIFENNNLKINFDLGHYKKFKELTLKNYHELAKHYALRLDAKEFLSRFC
                     EIEDNIFLPIMPKCKEFVKFYYDLYEKIGNEIDNSGEFERYKKK"
     gene            23384..23680
                     /gene="hupB"
                     /locus_tag="ACJFD7_000544"
     CDS             23384..23680
                     /gene="hupB"
                     /locus_tag="ACJFD7_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HGG0859385.1"
                     /translation="MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISF
                     IGFGTFSTQERAAREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKKK"
     gene            23808..24707
                     /gene="cysM"
                     /locus_tag="ACJFD7_000545"
     CDS             23808..24707
                     /gene="cysM"
                     /locus_tag="ACJFD7_000545"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HGG0859386.1"
                     /translation="MKVHEKVSELIGNTPIIHLKKFGINVFAKCEFLNPSHSIKDRAA
                     FEMIKDALDSKKINQDTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMI
                     TLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILR
                     DLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGVEPLNSPLLSKGEAGSHKIQG
                     IGANFIPAILNKEVIDQVITVSNEDAINTAKELAKSGLMVGISSGANVFAASMLAKKF
                     PDKRILTMLNDTAERYLSTDLFA"
     gene            complement(24714..25274)
                     /locus_tag="ACJFD7_000546"
     CDS             complement(24714..25274)
                     /locus_tag="ACJFD7_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HGG0859387.1"
                     /translation="MKKNIILFIVIVAIILGVIFFIKNHQNSYDFILKSDLKEETTLK
                     DFKGDKLIIYFGYTYCPDVCPATLSLVGKALKQINNPKAHLLFISLDPNRDNNLSNTN
                     EWLRYFYPKADALIAKDEKTLQKITKQYNVQYQKIDLNDSFMGYSIAHSNMLYLIDEK
                     GHFYKEISDLNPQEILRELRIFLNSQ"
     gene            complement(25271..25723)
                     /locus_tag="ACJFD7_000547"
     CDS             complement(25271..25723)
                     /locus_tag="ACJFD7_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859388.1"
                     /translation="MRKIIFILAFAFVIAILYIIFDFYVIKDSQKITKTDFSTPLTCD
                     LNVKDCTYSFNNKKVLISLNPKPLQSLDVTNLKIVNLGNYNNLGIKIYGLNMYMGEIK
                     PKIHRLNSTDYESKIVLAACVLDTMRFRVEFMDNNKPIGFYFDFELKK"
     gene            complement(25727..26146)
                     /locus_tag="ACJFD7_000548"
     CDS             complement(25727..26146)
                     /locus_tag="ACJFD7_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016531 - copper chaperone activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HGG0859389.1"
                     /translation="MKKILLLGALFAVNLWAVNDIEVKNAFVKQTPPHAQNSAIFLTI
                     FNNTNKDIALISAKSDISEVSELHTHIHKDGKMMMQKIPEIIIKAHSSTELKSGGYHI
                     MLLKLKKPIIKDTKVNLDLKFNNHKTIELKNIDSKEF"
BASE COUNT         8743 a         3422 c         4558 g         9433 t
ORIGIN      
        1 aaaaatctta atatttttta agttttttta aaaaaccaat atttttttat tttttgtaac
       61 tttaagaaat tgtaagttga aatttgattt tgaatagtta gtattttaag ctgaatgatt
      121 ataattttaa ataatggtgc ggttagcgag atttgaactc gcacacgcgg agcgcaccac
      181 cccctcaaga tggcgtgtct accaattcca ccataaccgc atagaaaaaa gcccaaaaag
      241 ggctttgata agttttattg taaaactata aaaggatttg cgtaaagtgc tattagcgcg
      301 ataacaagag catagataac ttgtgcttca atcatcgcta aagcgataaa catagttgtc
      361 attaattttg gcccaagacc agggtttcta gctgttcctg caattgttgc cgctgcagta
      421 ttacccatac cgatagcacc accaagtgct gcaacaccaa gacctaagcc tgctgcaaga
      481 actgaaaatg ctttaatcca tacattaata gcttcttgct ctactggagc attagtttca
      541 gctgcaaaag ctactgctgc acatgctaat aataaaaaaa gaactttttt cattatctta
      601 acctttctat aaaaaaattt ttttcaattt ttaaatcagt tcggcttgcg tatccctact
      661 taagacttaa aaataaatcc gaattatgaa ttataaccaa aagtatcttt atttttattg
      721 aaatttacaa aaattcacat ttttgattta aatttgattg ttttcaataa agcttaaaag
      781 tttttttgct ttaataatat tttaaaataa tttttaagtt aaggttgtaa cattgagttc
      841 taaattttca aaaataggtt tcattttagc ggtagcaggt tcagcagtgg gtttgggtaa
      901 tgcttggaaa tttccaacac tagtaggtca aagtggtgga tctgctttta tcttgcttta
      961 tataattctt actttaggtg taggttttgt gatattttta gctgagctta gcataggaaa
     1021 aattagtgaa aaagatccgg ttaatgccta tgaaaagtta gcaccttcaa ataaaaaagc
     1081 ttggtcttat gttggtttta ctatggtggg ggcgatttta atagtttctt tttatacctt
     1141 ggtgattggc tggatagtta aatatgtgtt tttaagtatc actggaaatt tgcctatgga
     1201 tctagaagta agtaaagcac agtttggatt ttttataagt gaggattttt taagtcagtt
     1261 tatttgtttt actttggttt ttttatgtgt tttttatatt gtttctaaag gtgttaagaa
     1321 tgggattgaa aagttaaatg tttggatgat gccttcattg tttattttac ttattttgat
     1381 gcttgtttat gctattagca aagatggttt tataatggcg gttaaatttc tttttgtacc
     1441 tgatttttcc aaaatcaaca cttcaaacgt tcttgaagcc ttaggacttg ctttttttag
     1501 tctttctttg ggcgttggaa cgattattac ttattctgct agtctgcctg ataaaactaa
     1561 ttttattacc agtactttaa atattatttt tatcaatctt ttagttggtt tattaatggg
     1621 tttggttgtt tttactttta tctttgaatt tggttacaat cctaatcagc aaggaccagg
     1681 acttgttttt atttccttag ctactttatt tgaaaaaatt ggagtgattg gttgtatttt
     1741 tggagcagcg ttttttattt ctttaatctt tgctggtatt acttcagcta tttcaatgat
     1801 agagcctttc actttttacc ttattaatac ttttggtatg agccgtaaaa aagctttgat
     1861 tttaatagga attgttgttt atattttagg aatgttgtgt attttatctt ctttaaaaag
     1921 tactcagttt ggattttttg gaatgagttt ttttgatttg cttgatagtg tttcaagcaa
     1981 ggttattatg cctttaggtg gaattttggc agctattttt gtgggatttg tgatgaaaaa
     2041 agaagcttta aaaattttat ttaaacctta tatgaggggt atattttttg aactttggta
     2101 tgtgtttttg agatttattt cccctttggc tgttgttata gttatgatag ccgctttttt
     2161 aaagtgagtt tgaaaaataa tgagaacata tttttcaaaa atcggttttg tattggctgt
     2221 tgctggtgga gccgttggtt taggtaatgc ttggaaattt ccaactttaa gcgcagaaaa
     2281 tggtggtttt gtttttgtgc ttttatattt gttttttact ttaactatag gatttagtat
     2341 ttttttggct gaagtggcta tgggacgttt aagtaaaagt gatcttgcaa atgcttattc
     2401 aaatcttgcc ataaaatatg gtaatagatg gcgatatggc ggcgttttta tgttaggtgg
     2461 tatttttatc ctctcttttt atctagttat catgggatgg gttttaaaat atactgtagt
     2521 gagtctttat tatcttccta aaactttaga tgaagcagca agtaattttc agaatttaat
     2581 tactacaaat ttgacaagtt ctgttttttt cttcacttta tctttttttc ttactttatt
     2641 gatagtatct aaaggtttaa tcaaagggat tgaaaaatta aacgttgtta taatgcctag
     2701 cttattttta atgcttgttt ttatgttgtt ttattgcatg ggatttaagc aaggttttgc
     2761 aaatgctttt tcttatttat tttatcccga tttttcacat tttaaattca gctctattgc
     2821 cgaagcttta gggcttgcat tttttacctt atgcttggga ataggttgta tagttacata
     2881 ttcatcggcc ttggataaaa aaacaaattt tataaaaagt tcagtgtata ttgttttgat
     2941 taatttattg atttctttta ttatgggact tattgttttt acttttatct ttgaatttgg
     3001 agccgatccg catactcaag gagcaggaat tgtttttgta tccttgatga gtttgtttaa
     3061 tcaacttgga gctttaggct atatttttgc attttgtttt ttcttagcac ttttttttgc
     3121 tggtattact tcagctattt caatgataga gcctttaact ttttatatga ttaataacta
     3181 tcaaatttct cgtgttaaag ctctattttt aataggttta tttgtttttg tttttggaat
     3241 ttgttgtatc ttgtcattaa atttaaattt tttttctatg tttagttttt ttggcaaaga
     3301 tttttttact ttattagata aattaacttc aaatttttta cttccacttg gtgttatagt
     3361 atgctctata tttgtaggtt tttttatgaa taaaaaacaa atttataaaa ttttttctaa
     3421 atttataagt cgaaaaattt tcttaatttg gttgtttttt attcgtttta tatcgcctat
     3481 agcaataatt ttggtaatgt gttatcaaat ttttgtataa taatgaaaaa atattttttt
     3541 aaggaaaaat aatggctaaa aaattcatcg atgtaatgga tacaagcttt agggacggtt
     3601 ttcagtctgt ttatggagct agggttttaa tggatgattt ttttcctgca gtagaagcag
     3661 caaaagaagc gggtattact cattttgaat ttggtggtgg tgctagattt caaagcttgt
     3721 atttttatct taatgaagat gcttttacca tgatggatag atttagggct attgtaggaa
     3781 aagatgctaa tcttcaaact ttagcaagag gagtcaatac cgttacttta gatactggaa
     3841 atagtgaact tattgatttg catgcaaaac tttttgcaaa acacggtact acaacgataa
     3901 gaaattttga tgcccttaat gatgtaaata atttaaaatt tagtggtgaa tgtatagtaa
     3961 aacatgggtt aaagcatgaa attactatta ctttaatgga tttaccgtca aattgcaaag
     4021 gtgctcatga tgtgcctttt tatgaaaaaa ttttaaaaga aattttaaca gcagaaattc
     4081 cttttcatag tatttgtttc aaagatgcaa gtggaacttc taatccaaat aaaatttata
     4141 aaaccattaa aatggctaga aaaattttac ctcaagatac acatattaga cttcatacgc
     4201 atgaaaccgc aggggtgagt atagcttgct atcttgcagc gcttgaagca ggggttgatg
     4261 gtattgattt ggctgcagct cctgtaagtg gtggaacttc tcagcctgat attttaacca
     4321 tgatgcatgc tttaaaaggc aaagattatg atttaggtgg acttgaagaa gaaaaaattt
     4381 taagatacga agaagtttta aaagattgtt taaaagagta ttttttacca cctgaagcta
     4441 ctatggtaaa tccacttatt cctttttctc ctatgccagg aggagcttta acagcaaata
     4501 cacaaatgat gagggataat aatattttag ataaatttcc acaggtcatt catgctatga
     4561 gagaagttgt ggaaaaaggt ggatttggta cttcggttac tccagtttct caattttatt
     4621 ttcaacaagc atttaataat gttatgtttg ggccttggaa aaaaatcgca gaaggttatg
     4681 gaaaaatggt gcttggttat tttggaaaaa ctccagttac acccgatgca aacattgttg
     4741 aacttgcttc aaaacaactt aatttagaac ccactacaga gcttgctatt aatatagccg
     4801 ataaagatga gagtaaaagc atagcttata ctaaaacctt gcttgaaaaa gagggtatag
     4861 aaacgagtga agaaaatata tttattgcag cagcttgtaa agaaaaaggt atagcatttt
     4921 taaaaggaga ggcaaaggta aatatacgca aattagctag tatgccaaag cctatgagtg
     4981 tagatgaaaa caaatttact gtagctgtaa atggtaataa atatcatgtg gaagtgagtt
     5041 atggttttga taaagatgtt aatgttaaga gtgtaaaaaa agtagaagaa aataaaaata
     5101 ttatttcttc aaattcaaca agttctgtcg atgctgaaaa tgaaatttta gcaggtattt
     5161 caggtaatgt ctttaaaatt tatgttaacg aaggcgaaga agtaaaatca ggtcaagcta
     5221 tcatggtttt agaagcaatg aagatggaga ttgaggttaa tgccccaaaa gatggaatta
     5281 tttcagagct ttgtattaaa ataggtgata ctgttaatga aggcgaagta ttagctattt
     5341 acaagaatta aagtgaggga aaaatgaaaa aatttgataa gttaggtttg gataatataa
     5401 aggaaatttt tcataattta agttatgatg aattaaatgc tcatgaaaaa gcaaataatg
     5461 aaggtttaag cacggataat gatacttttt gtgtagatac agggattttt acaggtagaa
     5521 gtcctaaaga taaatatttt gtaaaacaag atccatctag taaatatata gcttggggaa
     5581 aggtaaatca gcctattaca aaagaattat ttgataaact tttaactaaa gcaaagcaag
     5641 aattaagcgg aaagaaaatt tatgttcaag atgttttttg cggtgcttct ttgcaaagtc
     5701 gcaaagcagt aagatttgtt actgaaattg catggcaagc gcattttgtt aaaaatatgt
     5761 ttattcgccc aagtcaagag gaacttgaga attttaaagc agattttatt gtttataatg
     5821 cttgcaaatg catcaatgaa gattacaaac aagatggttt aaattcagag gtttttgtga
     5881 tctttaatgt tgaagaaaat atagcggtta ttggtggaac ttggtatggt ggagaaatga
     5941 aaaaaggtat tttttctatg atgaattatt ggttgccact agaaaataaa ctttctatgc
     6001 attgtagtgc aaatgtcgga gaaaaagacg atgtggcact tttctttgga cttagcggta
     6061 caggaaaaac tacgctttca accgatccaa aaagaagact cataggcgat gatgagcatg
     6121 gctgggatga tgaaggtgtg tttaattttg agggcggttg ctatgcaaaa acaatcaatc
     6181 ttgatcctga acatgagcct gaaatttatg gagccattaa aagaaatgca cttttagaaa
     6241 atgtagtttt aagagctgat aagagtgttg attatgctga tgcctcaaaa acagaaaaca
     6301 cgagagtttc ttatcctata gagcatattg aaaatcatga gcctagtcta aaagcagggc
     6361 atccaaaaaa tattatattt ttaagtgcag atgcttttgg aattttaccc ccggtgagca
     6421 aactaagcaa agagcaggct atgtattatt ttttaagtgg ctatacagca aaagtagctg
     6481 gaactgagcg cggtataaca gagcctcaag caactttttc agcttgtttt ggagaacctt
     6541 ttatgccttt acatccaacg gtttatgcga gattgcttgg tgaaaagatt gaaaaacatg
     6601 aagttaatgt ttatcttgtt aatacgggtt ggagtggcgg aagctacggt gtgggtaaaa
     6661 gaatgagcat taaggctact agggcttgca ttaatgctat tctagatgga agtattacaa
     6721 aatgcgaatt tgaaaatttt gaagtgtttg atttagctat tccaaaagct ttagaaggtg
     6781 tagaaagtgt acttttaaat cctataaata cttggttaga taaaaatgct tatattgcaa
     6841 caagagataa attagcacat atgtttatac aaaattttaa acgttatgaa gatgtcaaag
     6901 aaggcattga atttagcaaa tttggaccaa aaatttaagg catttaaatg aaaaatgaaa
     6961 tgtggtcagg acgttttagt gatgcaagtg atgagctttt aaaagaattt aatgcaagtt
     7021 taaatgtaga taaaactttg ttcaatgaag atatacaagg ttctatagca cacgctacaa
     7081 tgcttgaaag ttgtggtatt ttaaaaaaag aagaattaga tgctattata aaaggtttag
     7141 agcaggttag aagtgaaata gagcaaggta aatttatttt tgatattaaa gatgaagata
     7201 ttcatatggc cgtagaaaag cgtttaagcg agattatagg tagtgaaatt ggtggaagac
     7261 ttcatactgc aagaagtaga aatgatcaag tggctactga ttttaaactt tttgtcaaaa
     7321 aatctcatat tgaacttata aagcttttaa aagaattgat tcaaaccatg ctcgaacatg
     7381 ctaaagtgca taaaaaaact attatgccaa gttttacaca tttacagcac gctcagcctg
     7441 tgagtttttc tttttatatt ttagcttatg cttttatgtt aatgcgagat attaagcgtt
     7501 tgcaaaatag cctagaactc gcagactttt cgccacttgg atcttgtgca tgtgcaggaa
     7561 caagctatag aaccaatcgt gagttgagtg ctgaaatttt aggatttaaa gatattatgc
     7621 taaatgctat ggatggagtg agtgataggg attttgctct tgatttgctt tatgatatag
     7681 cagttatttt tacacacaca tcaagacttt gcgaggaaat gattttattt tcaagttcgg
     7741 agttttcttt tataactata agtgatagct tttcaacagg aagttctatt atgcctcaga
     7801 aaaaaaatcc tgatgtttgt gagcttatac gtggaaaaac agggcgtgtt tatggaaatt
     7861 tgatttctct tttaactata atgaaagctt tacctttagc ctataataaa gatatacaag
     7921 aagataaaga agggattttt gatagtgtaa aaaccgctaa agatagctta atcatcttaa
     7981 atgcaatgct aaaagaaata caaattaata aagaaaatat gcttaatgct tgtaaaaaag
     8041 gtcatttatt ggccaccgat ttggcagatt atttggtgcg tgaaaaaaat attcctttta
     8101 gaaaagcaca ttttatagtg ggaaatgttg ttgcacaagc tgaagcacaa ggtattgata
     8161 taagtgaaat taaagatctt tcaaaaatag atcctatatt tgatgaaaaa gctatggaac
     8221 ttttaaattt tgaattttct ttaaattcta agcaaagtga aggctcaagt tctattgcaa
     8281 gcgtagaaaa gcaaattcaa attttggaag gctttattca aaatttataa atattgttta
     8341 ggctattttg cctaaacatt gaatctaaaa tgcattacat cgccatctaa aacgatatag
     8401 tcttttcctt caaggcgtag ctttcctgct tctttggtgc cattttcgcc tttgtattgg
     8461 atatagtctt cataggaaat aacttcagct tttatgaagc ctttttcaaa gtcattatga
     8521 atcacgcttg ctgcttttgg tgctttccag ccttttttaa ttgtccaaga acgcacttca
     8581 actacaccag cggtaaaata actgatcagt ccaagcttag caaaagcagt gcgtatgatt
     8641 tgatcaagac cgctttcgtt aactcctaga gaacttaaaa attcatgact ttcttcatcg
     8701 cttaatccta ctaattcttc ttcgattttt gcacaaagct tgataacttc atgatcattt
     8761 tttttagcat attcttttaa agcttttaca taatcattat cttcactaat accattttca
     8821 tcaacatttg caccataaat cacctcttta gcagaaagca gtcttaattc cttgattagg
     8881 gcttgataaa tttcactttc cttttcagga taagaacttg cagctaagcc tttgtttaaa
     8941 tgatcaagta aggaatttgc aagttcgaga ctttctttgg cacccttttg attggctttg
     9001 gcttctttgg tgagtttttc tattttttta ctcagttgct caatatctgc taaaataagc
     9061 tctgtattga taatttctac atcacgtaaa ggatcaactc caccttcaac atgggtaata
     9121 ttttcttcat caaaacaacg tactatatgc aaaataacct cagtttcacg tatatttgaa
     9181 agaaatttat ttcctaagcc ttcgccttta cttgcgcctt taacaagtcc agcgatatct
     9241 acaaattcta ttaaagaatg cataattctt tcaggtttta ctattttagc aagttcatta
     9301 agtcttaaat caggaacttc aaccatggct ttattaggct ctatggtgca gaaaggatag
     9361 tttgcacttt gggcattttg tgctttagtt aaagcattaa aagttgttga tttgccaaca
     9421 tttggaagtc ctactatacc tacgcttaaa ctcatttagc tttccttaaa atttgaatta
     9481 aataattaac acacatccta actccagctc cacctgcgcc aaaactagaa tatccccaag
     9541 atttttctgt ataagcaggt cctgctatgt caagatgtag ccatttatct ttatattctt
     9601 tacgaataaa tttatctaaa aataaccctg cggtaattgc acctccgtag cgactagagg
     9661 cagtattact aacatcggca atatttgatt ttataagttc tcttaagtga gggttgaaat
     9721 gtaagattgt ggtatattct ccgctttttt tagagcttag ataaaaatca ttttgcaatt
     9781 cctcattatt tcccataata gcgcttgtaa attctccaag tcctacaaca caagctccag
     9841 taagagttgc catatcgata agtaaatcag gttttaaatc ttgtgcaaaa gaaagacaat
     9901 cagctaaaac caagcgtcct tctgcatctg tatttcttac ctctatgctt acaccttcac
     9961 gactgattaa cacatcatca ggcttataag cattgccgcc tatcatattt tcagttgcgc
    10021 ccaaaatgca atgcacttct aaatctaaag caagttcagc tacggctttt atgattccca
    10081 ttgctgctgc tgcaccgctt ttatcagctt tcattgtaag cataaaatca gctggtttta
    10141 agcttaatcc accgctatcg taagttaagc cttttccaac aaatacaaca cgtttttttg
    10201 catttttggc tttatagctt agatgaatga ggcgtggtgg gtgtaccgag gcataattta
    10261 ccgctaaaaa ggcattcatt ttttctttgg ctaaaaattt ttcatcataa attttacaag
    10321 tgatgttttt attttcttta gctaaatttt gtgcatcttt tgccattttc aaaggggtgt
    10381 aaatttcagg aatttcattg actatatttt tagtaaaatt tgtggcatta gctaaaattt
    10441 ctccacgctc taaacctatc ttagcttcat ctttattaaa tttcttacca tttaattctt
    10501 cgcttgaaat aataaatttt tccaaagtac ttgttttttt ctcgctttta tatttgtcaa
    10561 atttataagc tccaaaaagt acgccttcaa ctaaagatgc aaaacttcta actacacaat
    10621 ctcctattat gctaggaagt tttacgcttt taatattaag tttctcaaga gttttatatg
    10681 ctgtgcaaag acttaatctt atatcctcat aagcaagact tttaagctct aaataaagct
    10741 ttttattgtt taagtctaat aatgtacctt cgcctttgta attattaagt ttaaaaaaat
    10801 ctttttcttt gttaaaaatt tttaaatttt tatcctgtat aaaaacaagt tcaaagtctg
    10861 cttttatagc atctagtttt ttatcgttta attcaaattt catgattttt tccttttatc
    10921 tttaagtata gctttttcca tttgtttaaa accaaataat aaaagggata aaaaagctat
    10981 aataataatg gctgcataat accaatgttc ttcagtccaa gtcaccatct tccaaatttg
    11041 ttctccaaaa taccaagcta aaagtatagt gattgatgcc caaacccaag cactaaaaag
    11101 attgataata gcaaattttt ttgcactata acgcgtgatt cctatactca taggtataat
    11161 ggttctaaag ccatacatat agcgttgtat aaaaataata ggccaaccaa aacgttgtaa
    11221 aagtaggtgt gctactgcaa atttacgcct ttgagttttt aatttttttt gtatgtagcg
    11281 tttattatat cttcctatat agaaataaat ttgatcacct acaaaaccac caagtcctgc
    11341 tataaatata acaaaaccta aatttacatg tccttgatga gcaaaaatac ctgctaaaat
    11401 taaagctaac tctccttcta aaatgcacca taaaaaaata ataatataag ctagatcttt
    11461 gtattggtaa agtaaatttt ttaaaaattc ttccatttgt acctttctat agttttaaat
    11521 ttctaaaaca ctataaactg aagtaagttt ttcaagttta tttgctccat ttaaatcttt
    11581 aagattcatt aaaaaacaag cttcaacaca tttagctcca gctttttgaa tgagttcata
    11641 tgaagctata gctgttccgc cagttgctat taaatcatct acaagtaaaa ctcttgcatt
    11701 ttgaatattt ttaaatgcat ctttatgaag ttctacttta tcgctgccat attcaagatc
    11761 gtattcgcag ctaaaggttt caaaagggag ttttccaggt tttctaatag gcacaaaagg
    11821 aagattaagt tttgcacaaa tcatagatgc aaagataaat cctctgcttt ctgttcctgc
    11881 tatgaagtct agattgtaat ctttgtagcg ttcttttaaa tgtctaagta gaaaatttaa
    11941 agcttctttg ttatttagta gagtggtgat atctctaaaa ataattcctt tttttggaaa
    12001 atcaggaata atcctaatgc tatcaagcag atattttttt tcttcttgtg ttagttttat
    12061 cataataatg cctcgatttt tgcttctaat tctttaattc tttgtcttag tttgtcattt
    12121 tccaagcgat attgagaatt tctggttctt aaagatgtaa ggtctgcttt gattttatta
    12181 agctcttctg tgagtatatc tatatttcca aggcttcttt gaagttgaat ttgtagtttt
    12241 ctaatgacaa tctcagtatc atcaagattg tttttgataa aatcttttga tgttttttct
    12301 ttattaagta gagttttata gtaaaacaac attacaataa gatagatagt tgcacaaatc
    12361 aatatagtta aaacaagcca gtttgtaaac attatatttt tacctcaatt ttttgaattc
    12421 tttgcatatg tctcccttct tcaaaaggag tttgaatgaa tttttctata atatctatag
    12481 ctaattcaac cccaattaat cttccgccta atgccaaaac attggcatca ttatgctttc
    12541 ttgcaagttc tgcacttaag ctttcgtggc ataatgcaca acgaatgttt ttatgacgat
    12601 ttgctgcaat agaaattcca attccacttc cacaaataag aatgccaaag ctccgtttgt
    12661 ttattttttc ggcaagtaaa tgcgcataat caggataatc gcagcttgcg caagtgtttg
    12721 ttcctaaatc gttaaaaatt atattttttt cttttaaaaa tacgcaaatt ttttctttta
    12781 attcaaaacc agcatgatcg ctagcaatat aaattttttc cctaagcatt ggtttcctaa
    12841 ttactatata aaataagata aaaacctaat cttatcatat taaatcataa aaacagcttt
    12901 tctttgtttt aaaaataagc tttatttttc tttatatatg ttagaatcat gtgacaagaa
    12961 aaataaaatt tcaataaatt aagaggagaa gaaagtgaag ctcatactca taggatcttc
    13021 aacaggtggt cctaatcagc ttaaatttct tttaaaggat attgatgtaa aaaatacttg
    13081 tgtagttata gctcagcaca tgagtgccag ttttattcca tcttttgtgg ggcaatttaa
    13141 taaagaagct tttagtgaag tgtgcttatt gaacgataaa gaaatattaa gcaataaaat
    13201 ttatatttgc cctaaaaata ctattttatc tggaaattta aatattgtag ccgcttggca
    13261 agatgtggct tcaagcttta aaccgagtgt ggatttactt tttcattccg ctgtttcttt
    13321 ggcaaaaaca aataaaatac ttgctattat tttaacgggt atgggagatg atggcgcaaa
    13381 aggtttattt gagctttata aaacaggagt tagatgttta tgtgagaatg aagcagatag
    13441 cgtcgtttat ggtatgccaa aaagagcaaa agatatgaat ccgcatttaa aacctatgag
    13501 cttaaaagaa attaaaaaag aaattgtaaa ttttattgat caggattaat aaaaggaaaa
    13561 ttgcatggaa aaaaaaataa ctcctagcga attggaactt aatgaattta taaaaattat
    13621 caacgaaatg agtggtattg atttaaccga taaaaaaaat atactagctt taaagttgaa
    13681 taaatttctt gaaggaacta atactaaaaa tttttctgaa tttttgggaa aattaaaaag
    13741 caatagacaa cttaaacaag aaactttaga ttttgtaacc ataggtgaaa cttatttttt
    13801 aagagaattg gctcaattga aagaaataat ttattatgcc aaaagcttag aaaagagagt
    13861 aaatatccta agcgcccctt gttcaagtgg agaagaagta tattctttgg cattattggc
    13921 tgtacagaat tttattaaag atatgtatat tttaggtgtt gatattaatt caagtgtgat
    13981 tgaaaaagca aaacttggaa aatatcaagg aagaacttta cagcgattga gcgagagtga
    14041 aaaaagaagg ttttttttag aaagcgaaga taaattttat actattaata aaaatgagct
    14101 ttgtacttgt aaatttgaac tttgtaatgt ttttgaagaa aaattttcaa gattgggaaa
    14161 atttgatatt atagcttcta gaaatatgat tatttatttt gatcatgaat caaaactaaa
    14221 acttatggag agatttcata gaattttaaa tgataaagga aggctttatg ttggcaatgc
    14281 tgatttaatt ccagagacta tttattttaa aaagattttc tctccaagag gtgtttacta
    14341 tgaaaaagta taaattctaa aaattactaa aagttacact ttggaaattt attagtaaaa
    14401 ataagttaca ttttgaagta gttttcttta tttaatgata aaataatttc aattaatttt
    14461 atatttagct aaaaataaag gaaaaaactt gattgaatta aaaaatgtaa acaaatacta
    14521 cggaactcat catgttctaa agaatattaa tctttctgtt aaagaaggtg agaagcttgt
    14581 tattataggt ccaagtggaa gtggaaaaag tacaactatc cgttgcatga atgggcttga
    14641 agaagttagt tcaggagagg tcgtagttaa caatcttgtt ttaaatcata aaaataaaat
    14701 tgaaatttgc cgaaaatatt gtgcaatggt ttttcagcat tttaatttat atccacatat
    14761 gacggttttg caaaatttga ccttagctcc aatgaaactt caaaaaaaat ctaaaaaaga
    14821 agctgaagaa acagctttta agtatttaaa agttgtaggg ttgctggata aagcaaatgt
    14881 ttatccagca accctttcag gtggacaaca acaacgcgtt gctatagcaa gatcactttg
    14941 tactaaaaaa ccctatattt tatttgatga acctacttca gcccttgatc cagaaaccat
    15001 acaagaggtt ttagatgtaa tgaaagaaat ttcacatcaa agcaatacta ccatggtggt
    15061 tgttacacac gaaatgggtt ttgcaaaaga agtagcagat aggattattt ttatggaaga
    15121 tggtgctatt gtggaagaaa atattcctag cgaatttttc tcaaatccaa aaactgaaag
    15181 agcgcgactc tttttaggga aaattcttaa aaattaacca aaattgaaag gagaaaaaat
    15241 ggtttttaga aaatctttgt taaagttggc agtttttgct ctaggtgctt gtgttgcatt
    15301 tagtaatgct aatgcagcag aaggtaaact tgagtctatt aaatctaaag gacaattaat
    15361 agttggtgtt aaaaatgatg ttccacatta tgctttactt gatcaagcaa caggtgaaat
    15421 taaaggtttc gaagtagatg ttgccaaatt gctagctaaa agtatattag gtgatgataa
    15481 aaaaataaaa ctagttgcag ttaatgctaa aacaagaggc cctttgcttg ataatggtag
    15541 tgtagatgca gtgatagcaa cttttactat tactccagag agaaaaagaa tttataattt
    15601 ctcagagcct tattatcaag atgctatagg gcttttggtt ttaaaagaaa aaaattataa
    15661 atctctagct gatatgaaag gtgcaaatat tggagtggct caagctgcaa ctacaaaaaa
    15721 agctataggt gaagctgcta aaaaaattgg cattgatgtt aaatttagtg aatttcctga
    15781 ttatccaagt ataaaagctg ctttagatgc taaaagagtt gatgcgtttt ctgtagacaa
    15841 atcaatattg ttaggttatg tagatgataa aagtgaaatt ttgccagata gttttgaacc
    15901 acaaagttat ggtattgtaa ccaaaaaaga tgatccagct tttgcaaaat atgttgatga
    15961 ttttgtaaaa gaacataaaa atgaaattga tgctttagcg aaaaaatggg gtttataata
    16021 tgaatgaaag tgtaggtttt gttgaacatt taagacaaat tcttacttct tggggtttat
    16081 atgatgaaaa tagtataagc ccttttgcgg tgtggaaatt tttagatgct ttggataata
    16141 aagatgcttt tattaatggt tttatttata ctttagaagt aagcattctt gctttgctta
    16201 tagctacaat ttttggaact ataggcggag ttatggctac aagtagattt aaaattatca
    16261 gagcctacac tagaatttac gtagagcttt ttcaaaatgt tcctttggta atacaaattt
    16321 tctttttgtt ttatgccttg cctgttttag gtataaggct tgatatattt actattggtg
    16381 tattgggtgt tggggcgtat cacggagctt atgtaagcga ggtggttaga agtggaattt
    16441 tggctgtgcc aagaggtcag tttgaagctt ctgcgtctca agggtttact tatattcaac
    16501 aaatgcgtta tattatagta cctcaaacca ttagaattat tttaccaccg atgacaaatc
    16561 aaatggtaaa tttaattaaa aatacctctg tattgcttat tgtaggtgga gctgagttaa
    16621 tgcattctgc tgatagttat gcagctgatt atggaaatta tgcgccagct tatatatttg
    16681 cagcggtttt atattttata atttgctatc ctttggctta ttttgcaaaa gcttatgaaa
    16741 ataaattaaa aaaagcacat ttaacgagat aaagggttgt taatggaaaa tgtttttaat
    16801 gcacaaaata ttgaattttt aatgcaaggt ttatttctga cattaaaaat agccttagca
    16861 acttgtatta tttcgattgt ttttggaact tttttagcta taactaaaaa ttatggggat
    16921 agattaagta aatttttagc agcttgctat atagatattt ttagaaatac tcctttatta
    16981 ttatggatgc ttgcagcttg ttttgttcta cctgtatttt ttggacaatt tcctcaagct
    17041 ttttggggta ctataggatt ttcactttat acgagttcgg ttatggctga aattattaga
    17101 ggtggattaa attctatacc aaaaggtcag tttgaagcag cttattctca aggttttggt
    17161 aaatttttta ctctttttta tattatttta ccacaaactt ttagaaaaat aatacctgct
    17221 ttattatctc aaattgtaac cactgtaaag gatacagctt atttagcggg tttaggtata
    17281 gctgaactta cttataattc aaaaactata ttggcaaaac taacaagttt tgaagaaatt
    17341 ttagcgatga taggtgttgt tgcgggaatt tattttataa tatgtttttc actttctatg
    17401 ttggtaagat attatgccaa aaagacagct tacatttctt aaaaaagctt atatttttat
    17461 ataagctttt taaatttaca gcagttttta acattttttt tattaaaatc ttttgtatta
    17521 attcataatt ttattgatta aggtttttta tgcgaggtta taaaattttt tcaggctcag
    17581 ctaatgtcga atttgcaaga caagtttcta aatatctctc cctgccttta agtgatgctg
    17641 gagtaaagcg gtttagtgat ggagagatta gtgttcaaat tgatgagagt gtacgcggaa
    17701 aggatgtttt tattattcaa agtacttgcg ctcctacaaa cgataattta atggaacttt
    17761 taattcttac agatgctttg cgtcgctcaa gtgcaaattc aattacggct attatcccat
    17821 attttggcta tgcgagacaa gatagaaaag caaatcctag agtgccaatt actgctaaac
    17881 ttgtggctaa tttgattcaa gcagctggga ttgatcgcgt agctacgata gatttgcatg
    17941 caggacaaat tcagggtttt tttgatattc cagtagataa tctttatgga agtatagttt
    18001 ttaatgatta cattaaagcc aaacatttta aaaatgctat tataggaagt ccagatatag
    18061 ggggtgttgc aagagctagg agtgttgcaa agcatttagg acttgatata gttatagttg
    18121 ataagcgtcg tgaaaaagcc aatgaaagtg aagtaatgaa tattattgga gatgtaaaag
    18181 ataaagaagt tatcttagtg gatgatatta ttgatactgc tggcactata gttaaagccg
    18241 cggaagcttt aaaagaaaaa ggtgcaaaat ctgttatggc ttgctgtact catgcagttt
    18301 taagtggaaa agcctatgag agaatagcaa gtggagtttt agatgagctt gtggtaacag
    18361 atactatacc tttaaaagag caattaccaa atattaaagt attaagcgtt acacctgttt
    18421 ttgctgaagt aatacgtcgt gtttatcata acgaaagtgt aaattctctc tttatttaga
    18481 ttaaaaaagc ttaaagatta tttttaagct tttcattttt atgctactta aagaaacaaa
    18541 aaacatatat ttttttaaaa atgtgaaaaa actaaacatc tttctatata atttaatcta
    18601 taaatctgct attctttgaa aatattttat tttcttagga gaaatatgac tcagttaagt
    18661 actaaaattt tatggttgtt tgttgcaact ttaggcgcta tttgttttgg ttatttagct
    18721 ttacaaaatg gcgaaagtgt atcagcgatt tatttggtgg ttgctgctgt atgtatttat
    18781 atgataggat atagatttta tgggcgtttt gtagcttata aggttttaga acttgataaa
    18841 aatcgtgcaa caccagcact tgtagaaaat gatgggcgtg attttgtgcc tacaaataaa
    18901 gctgtattat ttggacatca ttttgctgct attgcaggag caggtccatt agtaggacct
    18961 atcttggccg ctcaaatggg atatttgcct tctatgcttt ggattttagt aggaggagtt
    19021 ttagcgggtg ctgtgcatga ttttgttgtt ctttttatat ctactcgtag aaaaggtaga
    19081 agtcttggcg agatgattaa ggatgagatg ggtaaattta caggtggagt tgctatggtg
    19141 gcgatttttg gcattatgct tattattatt gccattttag ctatggtggt tgtaaaagct
    19201 ttagcagaat ctccatgggg tttatttact atcgcaatga ctattcctat agcaatattt
    19261 atgggcattt atatgcgttt tatccgtcca ggtagagtag gggaggcttc tataataggt
    19321 tttgtgcttt taattttggc tattcattat ggtagcgtta tagctgctga tccttattgg
    19381 gctaaaatat ttactttaga agctccaact ttggcaattg ttatgatggc ttatggtttt
    19441 attgcttctg ttttacctgt gtggttttta cttgctccaa gagattatct ttcaactttt
    19501 ttgaaaatcg gtgttattgt ggtaatggct gtagctattg ttttggttgc tcctgattta
    19561 caaatgccaa aagcaaatac tcagtatttt gatggaacag gtccagtatt tgcaggtgga
    19621 gtgtttccat ttttatttat taccattgct tgtggtgcga tcagtggttt tcatgctttg
    19681 atttctagtg gaactactcc taaaatgctt gaaaacgaaa ctcatacttt ggctgttgga
    19741 tatggctcta tgcttgctga gagtgctgtg gcgattatgg ctttaatttg tgcttgtatt
    19801 ttacatccag gtctttattt tgctataaat tcaagctctg ctttgatagg aacagatgtt
    19861 gtaaatgtag cacaaactat ttcaagttgg ggatttagta ttgctcctga agaaattact
    19921 actttaacca caaatatagg agagcatact atactttcaa gaacaggggg agccccgact
    19981 tttgctatag gtgtagcttt gatcttgcat gaactttttg gcggcgtgga tttgatggct
    20041 ttttggtatc attttgctat attgtttgaa gctttattta ttttaacagc ggtggatgct
    20101 gggacaaggg cttgtcgttt tatggtgcaa gatatattgg gtaatgttta taaaccttta
    20161 ggagatattc ataattatcc agctggactt ttggctacgg ctttaagtgt tgcaggttgg
    20221 ggatattttc tttatcaagg cgccattgat cctaagggag gaatttatac actttggcct
    20281 ctttttggcg tgagcaatca aatgcttgcg ggtatggctt tgcttcttgc tacaactata
    20341 cttgtaaaaa tgggcaaggc aagatatact tgggttactt tagtacctgc ggtatttgtc
    20401 ttagtggcaa ctctgtatgg aggaattcaa aaaattatgc cttatgaaga aggcaataaa
    20461 atagcaaatg cggtaagtca tgtagccgcc gttagcatac aaagtcaaaa aattaaagat
    20521 ttagaattta aattaaataa tactaaagat gaaaaagaaa tttctacaat tagaaaagaa
    20581 atttcaatag ccactcaaaa taaagttgga aatttactta atgcaattct ttgtgtgttc
    20641 tttatgatag ctaccttgct tgttataatt tcttgtatag gaatttgctt aggtaaaatt
    20701 aaaattcctc ttaaagaaac taagtatatt aagattgatg aatttcaaaa aatttaagta
    20761 ttattatgaa aaagccgaaa ggttttttca tcccttggtg ggactttcta gttatgataa
    20821 gtatttagaa cacatgaaac aaaaacatcc aggaaaaatt ccaaaaacca gaggggaatt
    20881 tttcaaagaa tgtctagata aaaaatataa tagtggcggt ttaaataaat gctgataagc
    20941 ttaaaggata aagttttatc atacaaaata agctttaagc atttaaaaag ccatgaattc
    21001 ttttaagttc ttcactaata ggttttttct ttccatctct tgtaacactt acataagtta
    21061 ctaaagccga agttacatta atacaagaag tacaaccttg agaatccact ctttgagctg
    21121 tgacttctac ttcaacgctg attgaagtgt tgcccacatt tacaacttta gagtaacaag
    21181 aaattatatc gcctataaaa acaggttctt taaaaactac tttatccata gagatggtta
    21241 caacgcgttc aggagaaagt tctcttgctg cgatagctcc tgctaaatcg atttgtgaaa
    21301 gtatccatcc gccaaaaata tttcctgctg gatttgtgtc acttggcata gctacaattt
    21361 ttaattttgg ttctcccata tctctcattt ttactcctta ttttaaaaaa tgaattataa
    21421 ttaaaaaagt taaaaaggag aataaaagta tgaataattt taaagaaata gctaaattgg
    21481 ttagaaaata caaagaaaga aataatgcgt tatatgagtt tttagacaaa gaagatgtgg
    21541 gcgagtattt tagatctttg atttctttaa gtgagttaaa acaagataag acaactatgc
    21601 tagccatact taggcgtttg attgatttaa aagaagaaaa tttagttcaa gagtggaaaa
    21661 aaaacaactt taaggaagat aagattatag agttaaaaca taagttctat gaagaggtta
    21721 gaaagtttta tgaaaaagaa catcaaaatt taattaatga aataaaagag aaaaaacttt
    21781 taaataattt ttatcagtcc ttaatacaag gagtgcataa tataggttta attatgaata
    21841 tttttgaaat ttcttggact aaagaaatta tagaaaaaaa taataaaatt ttatctactc
    21901 aatttccaaa tttagatgat gcaatggaat ttttacgtaa aaatcattta tatcaaaaaa
    21961 ctccagaagg agaaatttgt gagcgaagct atggtgtttt agttagaata ggaaatttat
    22021 ggaaatttgt tccttatgcg agatttttcg agaatgaaat tttaaaatta gaatttgctt
    22081 ttgaaaatat gattgatcag cttaaaatat ttgctagcag cgaagaggaa aaagcttata
    22141 tagaatattt tgaaaaatta aaattagcgt tttgtgaaaa agatgaagat agggttataa
    22201 aagcttggca agaagctgaa tttgcttgga tgaaagtaaa atcaccttta caagtgggac
    22261 atcctttaga atattatgaa gataattata ctcatgcggt ggcattagaa tgggatataa
    22321 gaatagaaga tgaaaatgat tttgatgttt tgaaatttgg taatgaaatt aaggaaagtt
    22381 ttgaacatgt ttataaaaat ataggacttg aagattgtga attagaaaaa gaagttttat
    22441 ctaatataga aaaaactcaa ctttatattt gcactccgat gatattttat ggtgctgaac
    22501 ttaaaggttt attctcagct caagtcgttc caaatgatga gtttgtaagt tctaaggcgg
    22561 gcaaaaaaat atttgccttt ataaattttg tatatgaaaa tgctaaaaca aagcctttta
    22621 tgaaaatttc aagcgagatt tttgataaag aatttttgga ttttggaaga aatattttat
    22681 tttatcagga aaaaatttgg aaaagggttt atgaagtatc aactataggc catgaatttg
    22741 gtcatatatt ttttattgct aatgataccg aaaaaacaat gaatcagagt ggttttttta
    22801 aaaatataga agaatataaa gctactacag gtggacttat aaatttcttt tatcacgaac
    22861 aagatgactt gataatgcct gtttttcatg aacttataaa aagagctatt ggacttattt
    22921 cttggcaaag ggttgatgaa gttagacctt attatacaga aggacttatt catcttagtt
    22981 tgctttttga aagtgaagta ttgatttttg aaaataataa tttgaagata aattttgatt
    23041 tagggcatta taaaaaattt aaagaactaa ctttaaaaaa ttatcatgaa ttagcaaaac
    23101 actatgcttt aagacttgat gcaaaagagt ttttaagtag attttgtgaa attgaagata
    23161 atatttttct tcctattatg cctaagtgta aagaatttgt taaattttat tatgatttat
    23221 acgagaaaat tggtaatgaa attgataata gtggagaatt tgaaagatat aagaaaaaat
    23281 aataaagttt tttgaaaaaa acttaaaaaa agctgttttt tacttgatat tgttttttaa
    23341 atatgctaaa attaggcgtt tcaattaaaa caaaggagct tttatgacta aagcagattt
    23401 catttcatta gttgctcaaa cagctgggct aacaaaaaaa gacgctacta ctgctactga
    23461 tgcagttatt tctactatta ctgatgtttt agctaaaggt gatagcatca gttttattgg
    23521 ttttggtact ttttcaactc aagaaagagc tgctagagaa gctagagtac caagcacagg
    23581 aaaaacaatc aaagttcctg ctacaagagt tgcaaaattt aaggtaggta aaaaccttaa
    23641 agaagctgtt gcaaaagcaa gcggcaaaaa gaaaaaataa gacttcggct agataaattc
    23701 tagccttctt tcttaattaa ttcagatatt ttgtatcttt tatttacttt atttttttaa
    23761 acttttataa aactatcatt attaaacaaa aaaaggatat taaaattatg aaagtacatg
    23821 aaaaagtaag tgagcttata ggaaatactc ctattataca tttgaaaaaa tttggtatca
    23881 atgtttttgc taaatgtgaa tttttaaatc ctagtcattc tataaaagat agagcagctt
    23941 ttgaaatgat taaagatgct ttagatagta aaaaaattaa tcaagatact acaatagttg
    24001 aagcaactag tggaaatact ggaatttctt tggctatgat ttgtgcagat ttgggactta
    24061 aatttattgc tgtaatgccc gaatctatga gtttagaaag aagaaaaatg ataacactct
    24121 ttggcgctag gttagaatta actcctgcaa atttaggaat gaaaggagcg gttgataaag
    24181 caaatgaaat attattaaat actccaaatt cttttatggt ttctcaattt gaaaatattt
    24241 caaataaaaa tgcgcatcgc aagaatacgg ctttagaaat tttaagagat ttggataatg
    24301 aacttgatat ttttgtagct ggttttggaa ctggcggtac tattagtgga gttggggaaa
    24361 tactaaaaga aaaattagaa aaagtgcata ttgttggagt cgagcctcta aattctccat
    24421 tgcttagcaa aggtgaagcg ggaagccata aaatacaagg aataggggcg aattttatac
    24481 ctgctatttt aaataaagaa gttatagatc aagtgatcac agtaagtaat gaagatgcta
    24541 taaatacagc caaagaactt gccaaaagtg gtttaatggt aggtatatca agtggagcaa
    24601 atgtatttgc cgcaagtatg ctagcaaaga aatttccaga taaaagaatt ttaactatgc
    24661 taaacgatac ggctgaaaga tacctctcaa ctgatctttt tgcttaagta taattattga
    24721 gaatttagaa aaattctaag ttctcttaaa atttcttgtg gatttaaatc gctaatttct
    24781 ttataaaaat gacctttttc atcaataaga taaagcatat tgctatgtgc tatagaataa
    24841 cccataaaag aatcatttag atctattttt tgatattgaa cattatattg ttttgttatt
    24901 ttttgaagag ttttttcatc ttttgcaatt aaggcatctg cttttgggta aaagtatcgt
    24961 aaccattcgt ttgtattgct taagttatta tctctatttg gatctaaaga aataaaaaga
    25021 aggtgagcct taggattatt gatttgcttt aaggctttgc ctactaaact aagagttgcc
    25081 ggacaaacat cagggcaata agtatatcca aaatagataa taagcttatc tcctttaaaa
    25141 tcttttaggg tggtttcctc ttttaagtct gattttaaga taaaatcata agaattttga
    25201 tgatttttaa taaaaaatat tacacctaaa ataatggcaa ctataactat aaacaaaata
    25261 atattttttt tcattttttt agctcaaaat caaaataaaa ccctatgggt ttattattat
    25321 ccataaattc taccctgaaa cgcatagtat ctaaaacgca agcagcaaga actattttac
    25381 tttcatagtc tgttgaattt aatcgatgta ttttaggttt aatttcgccc atatacatat
    25441 ttaatccata aattttaatt cctaagttgt tataatttcc tagatttaca atctttagat
    25501 ttgtaacatc taaagattgt aagggtttgg gatttagaga aattaagact tttttattgt
    25561 taaaactata tgtgcagtct ttaacattaa gatcgcaagt caatggggta gaaaaatcag
    25621 tttttgttat tttttgagaa tcttttatta cataaaaatc aaaaataata tataaaatag
    25681 caataacaaa agcaaaagct aggataaaaa taatttttct cattaattaa aattctttag
    25741 aatcaatatt ttttaactct atggttttgt gattattaaa ttttaaatct aaatttacct
    25801 tcgtgtcttt aataataggt ttttttagtt ttaaaagcat tatatggtaa cctccagatt
    25861 taagctctgt gcttgaatga gcttttataa taatttcagg aattttttgc atcatcattt
    25921 ttccatcttt atgtatatgt gtatgcagtt cactgacttc actgatatcg cttttggcac
    25981 ttattagagc aatatcctta ttagtattat taaaaatagt aagaaaaata gcactatttt
    26041 gcgcatgagg tggagtttgt tttacaaagg cattttttac ctctatatca ttaacagccc
    26101 aaagatttac agcaaaaaga gcacctaaga gaagaatttt tttcatattg tatcct
//
LOCUS       DBBXPZ010000017        25062 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.017, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000017 DBBXPZ010000000
VERSION     DBBXPZ010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 25062)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25062)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25062
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.017"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..1110)
                     /locus_tag="ACJFD7_000549"
     CDS             complement(<1..1110)
                     /locus_tag="ACJFD7_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HGG0859390.1"
                     /translation="MKKIGVVIPIYNVEKYLRECLDSVINQTYTNLEIILVNDGSTDE
                     HSLNIAKEYTLKDKRITLFDKKNGGLSSARNVGIEYFSGKYKLKNKTQHIKENSLIEF
                     QLDSNNPYNIYKAYKSSQAFNNEKDLTNFTYPGIDYIIFLDSDNYWELNCIEECVIRM
                     KNVDVLWFDHDCTYEDNIKNKHKKTRMEIFNFKEECIITPKEYANRALSVGSRDISFG
                     WNGMIDFNFLKQIKLKFINFIINEDIHFGIILFASANKIYVLSQKLYLCRLRANSISN
                     HDKKITKANVSEYFKDIYETFGENAKEAKNYLKAASRVITALKLIEFFKDQKSENALA
                     IKETFLPCYAKKALMIKKFKKDPLNLKEQLVLIKPF"
     gene            complement(1114..2661)
                     /locus_tag="ACJFD7_000550"
     CDS             complement(1114..2661)
                     /locus_tag="ACJFD7_000550"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HGG0859391.1"
                     /translation="MNLKQISVIIIVKNAKQTLLECLNSLKDFDEIILLNNESSDNTL
                     NIANEFKKDFANLHIYHSAFIGFGALKNLALSYAKNDWILSIDADEVLENECIKELKN
                     LELQEDNIIALSRKNLYKGEWIKACGWWPDYVLRIFNKNFTRFNDNLVHESLVLPSNV
                     KKIHLKNGLKHHAFRDISHLINKMQHYSSLWAKQNIHKKSGVLKANLRAFWTFFRNYF
                     LKNGFLYSYKGFIISVCNALGTFFKYMKLYELQKQKPKTCALIITTYNQKERLKLVLD
                     SVKNLTFLPNEVLIADDGSKEDTARLIEEYQKNFPCPLKHIWQEDEGFRLSKSRNKTI
                     KNADSEYIIIIDGDMILEKDFIKEHLEFAQRRLFLQGSRVILNEKESEEILNKDDYRI
                     AFNKKDFKSSKNSFLAKMLYSLSKKDEKIFKKTTLIKGIRGCNMSFFKTDFDKLDGFN
                     ENFIGWGREDSEFVARFLFNKGIFRRLKFKAIAYHIYHKENSKKMLESNHQIYLDTIK
                     NKKISWR"
     gene            complement(2658..3545)
                     /gene="htrB"
                     /locus_tag="ACJFD7_000551"
     CDS             complement(2658..3545)
                     /gene="htrB"
                     /locus_tag="ACJFD7_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase
                     HtrB"
                     /protein_id="HGG0859392.1"
                     /translation="MKNSDRIYLSLYYILKFFVTFMPECILHFLALIVARITFYLNKK
                     HRKIIGTNLQICFPQYTQKERDKLSLKIYENFAQFGIDCLQNQNTTKEKILNKVNFIN
                     ENLLIDALALKRPIIFTTAHYGNWEILSLAYAAKYGAIAIVGKKLKSEIMYEILSQSR
                     TQFDIELIDKKGGIRQMLSALKKGRTLGILTDQDCAENESVRLKFFNKEVNYQMGASL
                     IAQRSNALIIPVYAYKEDGKFCIEFFKAKDSQNASLEELTLYQAQSCEEMIKKRPWEY
                     FFFHRRFASYNKEIYKDAK"
     gene            complement(3535..4563)
                     /gene="waaC"
                     /locus_tag="ACJFD7_000552"
     CDS             complement(3535..4563)
                     /gene="waaC"
                     /locus_tag="ACJFD7_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HGG0859393.1"
                     /translation="MKIAIVRLSALGDIIQSAVVLQFIKNFKKDIEIHWFVDEKFEGI
                     LKNHPLIDKLYALPLKDKKNLKSLKILLKARKNNYNAVIDLQGLIKSAIVSRILSRNN
                     FGFDKNSLKESFAHNFYNQKLELDYNENVFVRYLSLTSFMLNTDFNVKNLAFKQDIFS
                     VDENLKQLLNNKLKLDKNEKNILIHVGSSVENKIYPKTKLAILCKLLINEFQQAKIWL
                     AWGNVKEYEFAKEVLNLSGIDETHIELAPKFSLEELMAFTKMMNLIIGNDSGPTHLAF
                     ALNKASITIFGATPSYRNAFQTHINKIIDAGKKIQNAKHIDKSDFCITRIEEEDIFKL
                     AKGLLNEK"
     gene            4630..5424
                     /locus_tag="ACJFD7_000553"
     CDS             4630..5424
                     /locus_tag="ACJFD7_000553"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HGG0859394.1"
                     /translation="MAKNEGYICVFDCESVPDVELIRKTLGFEGSDLEVSLKALQWQK
                     EQSGSEFLPLPYHKIISICAVLSDNFGKFIKVNKIDGQNEKEMIANFFNFIENYEPKL
                     VSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWNNYKTRFSELKHCDLLESLGSNG
                     RGIKLDTLCSMVGLPGKYDVHGDEVMKLFYENELEKIHEYCESDVLNTYMLFLKYELI
                     KANVSEEDYVDFLSYMRDFLREKKSDRSYTEVFAKACESEISKVQS"
     gene            5483..6469
                     /gene="galE"
                     /locus_tag="ACJFD7_000554"
     CDS             5483..6469
                     /gene="galE"
                     /locus_tag="ACJFD7_000554"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003978 - UDP-glucose 4-epimerase activity
                     [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HGG0859395.1"
                     /translation="MKILISGGAGYIGSHTLRQFLKTDHEICVLDNLSKGSKIAIEDL
                     QKIRAFKFFEQDLSDFQGVKALFEREKFDAIVHFAASIEVFESMQNPLKYYMNNTVNT
                     TNLIETCLQTGVNKFIFSSTAATYGEPQTPVVSETSPLAPINPYGRSKLMSEEVLRDA
                     SMANPEFKHCILRYFNVAGACMDYALGQRYPKATLLIKVAAECAAGKRDKLFIFGDDY
                     DTKDGTCIRDFIHVDDISSAHLAALDYLQENESNVFNVGYGHGFSVKEVIEAMKKVSG
                     VDFKVELAPRRAGDPSVLISDASKIRNLTSWQPKYDDLELICKSAFDWEKQC"
     gene            6463..8157
                     /gene="pglK"
                     /locus_tag="ACJFD7_000555"
     CDS             6463..8157
                     /gene="pglK"
                     /locus_tag="ACJFD7_000555"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type lipopolysaccharide transporter PglK"
                     /protein_id="HGG0859396.1"
                     /translation="MLKKLFFILSKEDKNFLFFLLVFSVFVSFIETFAISLVMPFITL
                     ASDFSYFDRNKYLISLKEYLNIPVFEIIVYFGVGLIVFYVFRALLNAYYFHLLARFSK
                     GRYHVIAYKVFSKFLNINYEKFTQKNQSEILKSITGEVYNLSTMISSFLLLMSEIFVV
                     LLLYALMLLINYKITLFLSIFMVLNAFILVKILSPIIKKAGVRREEAMKNFFEILNTN
                     LNNFKFIKLKTKEDGVLSLFKAQSEAFSKANITNESVAAVPRIYLEGIGFCVLVFIVV
                     FLVLKNESDISGILSTISIFVLALYRLMPSANRIITSYHDLLYYHSSLDIIYQNLRQE
                     EENLGEEKLSFNQELKICNLSFGYEGKKYLFKNLNLNIKKGEKIAFIGESGCGKSTLV
                     DLIIGLLKPKEGQILIDEQELNANNTKNYRQKIGYIPQNIYLFNDSIAKNITFGDAVD
                     EEKLNRVIKQANLEHFIKNLSQGVQTKVGDGGSNLSGGQKQRIAIARALYLEPEILVL
                     DEATSALDTQSEAKIMDEIYKISKDKTMIIIAHRLSTITQCDKVYRLEHGKLKEEK"
     gene            8154..9233
                     /gene="pglH"
                     /locus_tag="ACJFD7_000556"
     CDS             8154..9233
                     /gene="pglH"
                     /locus_tag="ACJFD7_000556"
                     /EC_number="2.4.1.292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-
                     diNAcBac-PP-undecaprenol
                     alpha-1,4-N-acetyl-D-galactosaminyltransferase"
                     /protein_id="HGG0859397.1"
                     /translation="MMKISFIIATLNSGGAERVLVTLVNALCKEHEVSIIKFHAGESF
                     YKLENEVKVTSLEQFRFDTLYHKIASRFKKFFALRKALKESKADVFISFLDTTNIACI
                     AAKIGFKTPLIISEHSNEVYLKPKIWRFLRRVSYPFCDALSVLGSSDKVYYERFVKRV
                     RLLLNPCHFSDEIPFDSSFEKENLVLFIGRLDHNKNPAMFLKAIAHLDKNLQENYKFV
                     IAGDGELRQELEYKAKSLGIKVDFLGRVENVKTLCEKAKVLCLCSFVEGLPTVLIESL
                     YFEVCRISSSYYNGAKDLIKDNHDGLLIGCDDEIALAKKLELVLNNENFRKELVNNAK
                     QRCKDFEISHIKEEWLKLIAEVKNA"
     gene            9226..10155
                     /gene="pglI"
                     /locus_tag="ACJFD7_000557"
     CDS             9226..10155
                     /gene="pglI"
                     /locus_tag="ACJFD7_000557"
                     /EC_number="2.4.1.293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc(5)-diNAcBac-PP-undecaprenol
                     beta-1,3-glucosyltransferase"
                     /protein_id="HGG0859398.1"
                     /translation="MPKLSVIVPTFNRQVLLEKAIKSIQNQDFKDLEIIVSDDNSSDD
                     TKSVVQNLQKDDDRIKYFLNQNYKQGPNGNKNNGLDQASGEFVTFLDDDDELLSGALS
                     TLMQKANEGYAHVFGNCLIEKEGNLSKEFSGKGLEKDSEISKKDFLMAKFSGEFFSVF
                     KKSLLENKRFNEEFYGNEATLWVNLYKEKSFYIHKAFRIYRIFRQDSVTLGASKNAHR
                     VYLGYLELAKILENELRMSKDKDYKKTCASYYKMAAYYAKLAKNYKALYKCLFKSLSI
                     KINAPALILLILSIIPNNMIEKLSKIRVALCKN"
     gene            10143..11240
                     /gene="pglJ"
                     /locus_tag="ACJFD7_000558"
     CDS             10143..11240
                     /gene="pglJ"
                     /locus_tag="ACJFD7_000558"
                     /EC_number="2.4.1.291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylgalactosamine-N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     4-alpha-N-acetylgalactosaminyltransferase"
                     /protein_id="HGG0859399.1"
                     /translation="MQKLGIFIYSLGSGGAERVVATLLPILSLKFEVHLILMNDKISY
                     EIPECQIHFLECSKPSENPILKFLKLPFLALKYKKLCSNLGIDTEFVFLNRPNYIALI
                     ARMFGNKTRLVINECTTPSVMYAKNNFNSLANKFLISLLYPRADLILPNSKGNLEDLV
                     QNFSIKPKKCEILYNAIDLENIGQKALEDIALKDKFILSVGRLDKGKNHALLIRAYAR
                     LKTGLKLVILGEGVLKDELLALIKELNLEEKVLLLGFDNNPYKYMAKCEFFAFASVFE
                     GFSNVLIESLACSCAVVCTDHKSGARELFGDDEFGLLVEVDNENSMFQGLKTMLEDDK
                     LRKAYKNKAKTRAKAFDKVKIARDALKYLLG"
     gene            11244..13385
                     /gene="pglB"
                     /locus_tag="ACJFD7_000559"
     CDS             11244..13385
                     /gene="pglB"
                     /locus_tag="ACJFD7_000559"
                     /EC_number="2.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphooligosaccharide--protein
                     glycotransferase"
                     /protein_id="HGG0859400.1"
                     /translation="MLKKEYLKNPYLVLFAMIILAYVFSVLCRFYWIWWASEFNEYFF
                     NNQLMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLSTLTYWLYKITPFSFESIIL
                     YMSTFLSSLVVIPIILLANEYKRPLMGFVAALLASVANSYYNRTMSGYYDTDMLVIVL
                     PMFILFFMVRMILKKDFFSLIALPLFIGIYLWWYPSSYTLNVALIGLFLIYTLIFHRK
                     EKIFYIAVILSSLTLSNIAWFYQSAIIVILFALFALEQKRLNFMIIGILGSATLIFLI
                     LSGGVDPILYQLKFYIFRSDESANLTQGFMYFNVNQTIQEVENVDFSEFMRRISGSEI
                     VFLFSLFGFVWLLRKHKSMIMALPILVLGFLALKGGLRFTIYSVPVMALGFGFLLSEF
                     KAILVKKYSQLTSNVCIVFATILTLAPVFIHIYNYKAPTVFSQNEASLLNQLKNIANR
                     EDYVVTWWDYGYPVRYYSDVKTLVDGGKHLGKDNFFPSFALSKDEQAAANMARLSVEY
                     TEKSFYAPQNDILKTDILQAMMKDYNQSNVDLFLASLSKPDFKIDTPKTRDIYLYMPA
                     RMSLIFSTVASFSFINLDTGVLDKPFTFSTAYPLDVKNGEIYLSNGVVLSDDFRSFKI
                     GDNVVSVNSIVEINSIKQGEYKITPIDDKAQFYIFYLKDSAIPYAQFILMDKTMFNSA
                     YVQMFFLGNYDKNLFDLVINSRDAKVFKLKI"
     gene            13395..14525
                     /gene="pglA"
                     /locus_tag="ACJFD7_000560"
     CDS             13395..14525
                     /gene="pglA"
                     /locus_tag="ACJFD7_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HGG0859401.1"
                     /translation="MRIGFLSHAGASIYHFRMPIIKALKDRKDEVFVIVPQDEYTQKL
                     RELGLQVIVYEFSRASLNPFVVLKNFFYLAKVLKNLNLDLIQSAAHKSNTFGILAAKW
                     AKIPYRFALVEGLGSFYIDQGFKANLVRFVINNLYKLSFKFAHQFIFVNESNAEFMRN
                     LGLKENKICVIKSVGINLKKFFPIYVESEKKELFWKNLNIDKKPIVLMIARALWHKGV
                     KEFYESATMLKDKANFVLVGGRDENPSCASLEFLNSGAVHYLGARSDIVELLQNCDIF
                     VLPSYKEGFPVSVLEAKACGKAIVVSDCEGCVEAISNAYDGLWAKTKNAKDLSEKISL
                     LLEDEKLRLNLAKNAAQDALQYDENNIAQRYLKLYDRVIKNV"
     gene            14518..15120
                     /gene="pglC"
                     /locus_tag="ACJFD7_000561"
     CDS             14518..15120
                     /gene="pglC"
                     /locus_tag="ACJFD7_000561"
                     /EC_number="2.7.8.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl phosphate
                     N,N'-diacetylbacillosamine 1-phosphate transferase"
                     /protein_id="HGG0859402.1"
                     /translation="MYEKVFKRIFDFILALVLLVLFSPVILITALLLKITQGSVIFTQ
                     NRPGLDEKIFKIYKFKTMSDERDEKGELLSDELRLKAFGKIVRSLSLDEFLQLFNVLK
                     GDMSFVGPRPLLVEYLSLYNEEQKLRHKVRPGITGWAQVNGRNAISWQKKFELDVYYV
                     KNISFLLDLKIMFLTALKVLKRSGVSKEGHVTTEKFNGKN"
     gene            15107..15697
                     /gene="pglD"
                     /locus_tag="ACJFD7_000562"
     CDS             15107..15697
                     /gene="pglD"
                     /locus_tag="ACJFD7_000562"
                     /EC_number="2.3.1.203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine N-acetyltransferase"
                     /protein_id="HGG0859403.1"
                     /translation="MARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFES
                     TLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEESAGILIMPY
                     VVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVL
                     PNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRKI"
     gene            15795..16955
                     /gene="pglE"
                     /locus_tag="ACJFD7_000563"
     CDS             15795..16955
                     /gene="pglE"
                     /locus_tag="ACJFD7_000563"
                     /EC_number="2.6.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine transaminase"
                     /protein_id="HGG0859404.1"
                     /translation="MRFFLSPPHMGGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKAY
                     SKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCD
                     ETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENDIVLIEDAAEAL
                     GSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLH
                     YEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEYFSFLDELENS
                     RSNRWLSTALIDFDKNELNSCQKDINISQKNITLHPKISKLIEDLKNEQIETRPLWKA
                     MHAQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA"
     gene            16957..18729
                     /gene="pglF"
                     /locus_tag="ACJFD7_000564"
     CDS             16957..18729
                     /gene="pglF"
                     /locus_tag="ACJFD7_000564"
                     /EC_number="4.2.1.135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (configuration-retaining)"
                     /protein_id="HGG0859405.1"
                     /translation="MIFYKSKRLAFFLTSDIVLILLSVYLAFSLRFSGDIPSIFYHGM
                     MVSAIILLVLKLLFLFVFRIYKVAWRFFSLNEARKIFIALLLAEFCFFLIFYFFSDFF
                     NPFPRSAIVIDFVLSYMFIGTLRISKRMLVDFKPSRMKEEETPCIVVGATSKALHLLK
                     GAKEGSLGLFPVGVVDARKELIGTYCDKFIVEEKEKIKSYVEQGVKTAIIALRLEQEE
                     LKKLFEELVAYGICDVKIFSFTRNEARDISIEDLLARKPKDLDDSAVAAFLKDKVVLV
                     SGAGGTIGSELCKQCIKFGAKHLIMVDHSEYNLYKINDDLNLYKEKITPILLSILDKQ
                     RLDEVLKTYKPELILHAAAYKHVPLCEQNPHSAVINNILGTKILCDSAKENKVAKFVM
                     ISTDKAVRPTNIMGCTKRVCELYTLSMSDENFEVACVRFGNVLGSSGSVIPKFKAQIA
                     NNEPLTLTHPDIVRYFMLVAEAVQLVLQAGAIAKGGELFVLDMGRPVKIIDLAKKMLL
                     LSNRNDLEIKITGLRKGEKLYEELLIDKNDAKTQYESIFVAKNEKVDLDWLNKEIENL
                     QICEDISEALLKIVPEFKHNKEGV"
     gene            18729..19622
                     /gene="pglG"
                     /locus_tag="ACJFD7_000565"
     CDS             18729..19622
                     /gene="pglG"
                     /locus_tag="ACJFD7_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HGG0859406.1"
                     /translation="MYIKDIQRFEDNRYRARAYMSYILTRNLPNKLPDIHLETIKTAL
                     DKIAHEVVVFDALYILDISGMQIENAISLNKAHEIGQGEDRSTRSYFYRAVKLRRCVL
                     SDPYPSVLNNELCVTASMPIYDDKNNLLFVVCIDIKLEDILKIIQAGKFEFVFTQFSR
                     SVYFCFALVLFVITCFLFQKGFFSLFDNQAIGIEHMFESTIAITLALAIFDLAKTLIE
                     QEVLGRTKKEEGGIQKTMVRFLGSIIIALAIEALMLVFKLAIGDLSQMIYAIYLIGGV
                     SLLLLGLSVYLFTVKYKNNNI"
     gene            19735..20127
                     /gene="cheY"
                     /locus_tag="ACJFD7_000566"
     CDS             19735..20127
                     /gene="cheY"
                     /locus_tag="ACJFD7_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HGG0859407.1"
                     /translation="MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKN
                     EDVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNY
                     IVKPFTPQVLKEKLEDVLGTGSGEGAAE"
     gene            20150..20995
                     /gene="prmA"
                     /locus_tag="ACJFD7_000567"
     CDS             20150..20995
                     /gene="prmA"
                     /locus_tag="ACJFD7_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HGG0859408.1"
                     /translation="MQKKYYELFFIVEERYKNLFLDFAFDLGIEAIEEKDNGVYIRSH
                     ESLEEFSWALEIFAQKLTTTFNLNHKIISNLSLVEKENKDWIQEYKKGIKPILVDNVY
                     IHTTWQEEKKNCINIKINPALAFGSGHHESTYSCVKFLQKFSKSKLRALDLGCGSGIL
                     GIIMAKFGCNVEICDTDELAIDSSLENARLNGVDFHKAWCGSIDKANGLYNLIVANII
                     ADVILILEKDIKNHLEDNAILILSGILDKYSTRIKEKFQDLELIDEMQINEWCSFVYK
                     NNKKG"
     gene            20999..22936
                     /gene="ftsH"
                     /locus_tag="ACJFD7_000568"
     CDS             20999..22936
                     /gene="ftsH"
                     /locus_tag="ACJFD7_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HGG0859409.1"
                     /translation="MNNNTQNNKGNPQGNNFFNKNPIFIFAIFAIVMIIIFKGFFDGN
                     GSFGGALNGNEVNKNVPYSELKKLIESGQINQVSIGQTTIKAISSSRNTVYTAKKVND
                     PELVSLLDSKNIAYGAYSETNWFTDILFSWVLPVFIFFGIWMFLASRMQKNMGSSILG
                     IGSSKKLVNSEKPKVKFSDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLLVG
                     PPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFI
                     DEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLDAA
                     LLRPGRFDRQVLVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLANI
                     INEAALLAGRDSKKYVEQNDLVEAVERAIAGLEKKSRRINEKEKKIVTYHECGHALIA
                     ETTKGAKRVSKVSVIPRGLAALGYTLNTPEENKFLMQKHELIAEVDVLLGGRAAEEVF
                     IGEISTGASNDLERATDIIKAMISMYGMSEIAGLMVLEKQRNTFLSGGQTIKDYSEKM
                     AESLDDYVKKTLDERYKDVKDTLNTYKGAIETMVAALYEEETIEGNKVREIIKEFEDQ
                     NSLPTRLQELEEVKTEVKVEE"
     gene            22933..23550
                     /locus_tag="ACJFD7_000569"
     CDS             22933..23550
                     /locus_tag="ACJFD7_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004609 - phosphatidylserine decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HGG0859410.1"
                     /translation="MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLALIVICIFLF
                     RAPKRELVCSDEKAIFAPMDGRVTKIENIHHKDLGECVEITIKNALYDAGNFNTPFAM
                     SIIDIRLRHGLFLCSELKSAKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
                     HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA"
     gene            23560..24288
                     /gene="pssA"
                     /locus_tag="ACJFD7_000570"
     CDS             23560..24288
                     /gene="pssA"
                     /locus_tag="ACJFD7_000570"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003882 - CDP-diacylglycerol-serine
                     O-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HGG0859411.1"
                     /translation="MNNRPQLIYILPNLFTAASAFLGVISIIASIHGNYYTALIYIIL
                     SLICDGLDGRVARLTNSTSKFGVEFDSLADLVAFGVAPAVLFYMAIGYDFGKLGSLIT
                     AFFVVFGAIRLARFNVTTGTYEPSVFIGLPIPTAAVVSAIWTYAFISYDFLKPYGVVF
                     LVLQAILGLLMVSNIRYPSFKKLDFNRSSVLKVLIILIIIFSFLYLYPLESLVILASL
                     YVLYGIIRVLYTIIVSKFKIRNQE"
     gene            complement(24279..>25062)
                     /locus_tag="ACJFD7_000571"
     CDS             complement(24279..>25062)
                     /locus_tag="ACJFD7_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HGG0859412.1"
                     /translation="FQELQDILYEKNITIKFHSFQNFYEDFKSHKLIFNHEHQSIFKK
                     NTSQQITLLHPTRIRRPKFVNSTHALAKIIHSVAHIEFNAINLALDASYRFKNLPLQF
                     YYDWLEVADEEIKHFKLLNSALKELSYKYGNFPVHDNLESALEATKDSLSFRMGVVHR
                     GLEAKGLDANPFVVQKLQSSNHSIKNLLMEYLEIILNDEIKHVKKGDTWWKFANQNRY
                     DFIELCKTFKQFSLAGKKLNIQARIKAGFTQEECEVIEKFYS"
BASE COUNT         8439 a         3019 c         4470 g         9134 t
ORIGIN      
        1 aaaaggctta attaaaacca attgttcctt taaatttaaa ggatcttttt taaatttttt
       61 aatcattaaa gcttttttgg catagcaagg taaaaatgtt tcttttatag caagtgcatt
      121 ttcgcttttt tgatctttaa aaaattctat caattttaaa gcagttataa ccctgcttgc
      181 tgcttttaaa taattttttg cttccttagc gttttccccg aaagtttcat atatatcttt
      241 aaaatactct gacacatttg cttttgtaat cttcttatca tgatttgata tactgtttgc
      301 tcttaaacgg cacaaataca acttttgtga taaaacataa attttattag cactagcaaa
      361 caaaattatt ccaaagtgta tatcttcatt gataataaaa tttataaatt taagtttaat
      421 ttgctttaaa aaattaaaat caatcattcc attccatcca aaagaaatat ctctagatcc
      481 tacacttaat gctcgatttg catattcttt tggagtgatt atacattctt ctttaaaatt
      541 aaaaatttcc atccttgttt ttttgtgctt attttttata ttgtcttcat aggtgcaatc
      601 atggtcaaac cacaatacat ccacattttt cattcttata acacattctt ctatacaatt
      661 taattcccaa taattatcac tatctaagaa tataatataa tctataccag ggtaagtaaa
      721 attggttaaa tctttttcat tattaaaagc ttgagagctt ttatatgctt tatatatatt
      781 ataaggatta ttactatcca attgaaattc tattaaagaa ttttctttta tatgttgagt
      841 tttgtttttt aatttatact ttccactaaa gtattctata cctacatttc tagctgaact
      901 taaaccccca tttttcttat caaaaagagt tattctttta tcttttaagg tatattcttt
      961 tgcaatattg agtgagtgtt catctgtact accatcattt acaagtatga tttctaagtt
     1021 agtataagtt tgattgataa cactatctaa acattctctt aaatattttt ctacattata
     1081 gattggtata actacaccta ttttcttcat gttttatctc caagaaatct ttttattttt
     1141 gatggtatct aaataaattt gatgattgct ttcaagcatt tttttgctat tttctttgtg
     1201 ataaatatga taagcaatag ctttaaattt taagcgtcta aaaatgcctt tattaaataa
     1261 aaatctagcc acaaattcac tatcttctct accccaacca ataaaatttt cattaaaacc
     1321 atcaagttta tcaaaatcag ttttaaaaaa actcatattg caacccctaa tacctttaat
     1381 aagagtggtt tttttaaaga ttttttcatc tttttttgaa agactgtaaa gcattttagc
     1441 taaaaaagaa tttttagaac ttttaaaatc ttttttatta aaagctatgc gataatcatc
     1501 tttgtttaaa atttcttcgc tttctttttc atttaaaatt actcttgaac cttgtaaaaa
     1561 aagtcttctt tgtgcaaatt ctaaatgttc ttttatgaaa tctttttcca aaatcatatc
     1621 accatcaata attattatat attcactatc agcgtttttt atagttttgt tgcgactttt
     1681 actaagccta aacccttcat cttcttgcca aatgtgtttt aaagggcaag gaaaattttt
     1741 ttgatattct tcaataagcc ttgctgtatc ttctttgcta ccatcatctg cgattaaaac
     1801 ttcattgggt aaaaaggtta gatttttaac actatcaagc actaacttaa ggcgttcttt
     1861 ttgattatag gttgttatta ttaaagcaca agtttttggc ttttgctttt gaagttcata
     1921 taatttcata tatttaaaaa aagtccctaa ggcattacaa acgctaatta taaaaccctt
     1981 ataactatac aaaaagccat tttttaaaaa ataatttcta aaaaaagtcc aaaaagctct
     2041 taaatttgct tttaaaacac cacttttttt gtgtatattt tgttttgccc aaaggcttga
     2101 gtagtgctgc attttattaa ttaagtgaga aatatctcta aaagcatgat gctttaatcc
     2161 atttttaaga tgaatttttt taacattact tggtaaaaca aggctttcgt gtactaaatt
     2221 atcattaaaa cgagtgaaat ttttattaaa aattcttaaa acataatcag gccaccaacc
     2281 acatgccttt atccattcgc ctttatagag atttttacga ctaagtgcga tgatattatc
     2341 ttcttgaagt tctaaatttt taagctcttt aatacactca ttttcaagca cttcatcagc
     2401 atcaatgctt aaaatccaat cattttttgc ataacttaaa gcaaggtttt ttaaagctcc
     2461 aaaacctata aaagcactgt ggtaaatgtg caaattagca aaatcttttt taaattcatt
     2521 agctatattt agggtattat cactactttc attgttaagt aaaataattt catcaaaatc
     2581 ttttaaagaa tttaaacatt caagcaaggt ttgttttgca ttttttacga tgataataac
     2641 acttatttgc tttagattca ttttgcatcc ttgtaaattt ccttattata acttgcaaag
     2701 cgtctatgaa aaaaaaagta ttcccaaggt ctttttttaa tcatttcttc gcaactttgt
     2761 gcttgataaa gtgtcagttc ttctaagctt gcattttgag aatcttttgc tttaaaaaac
     2821 tctatgcaaa atttaccatc ttctttatag gcataaacag ggatgatcaa agcattgctt
     2881 ctttgtgcga taaggcttgc tcccatttga taattcactt ctttgttaaa aaattttaat
     2941 cttacgcttt cgttttctgc gcagtcttga tcggttaaaa ttcctaaagt tctccctttt
     3001 tttagagcgc ttagcatttg tcttatgccg ccttttttgt cgataagttc tatgtcaaat
     3061 tgggtgcgac tttggcttaa aatttcatac ataatttcac tttttaactt tttccctact
     3121 atggcaatcg caccatattt agctgcataa gcaaggctta aaatttccca gtttccatag
     3181 tgtgcagttg tgaagataat aggacgcttt aaagctagag catctataag taaattttca
     3241 ttgatgaaat ttactttatt gagaattttt tctttggtag tgttttgatt ttgcaaacaa
     3301 tcaattccaa attgagcaaa attttcataa attttcaaag acaatttatc gcgttctttt
     3361 tgagtgtatt gagggaagca gatttgcaaa tttgtaccaa tgattttgcg atgtttttta
     3421 ttaagataaa aagtgattct tgctacaatc aaagctaaaa aatgcaagat acactcaggc
     3481 ataaaagtaa caaaaaattt caaaatataa taaagactaa gatatattct atcactattt
     3541 ttcattaagc aagcctttgg caagtttgaa gatatcttct tcttctatac gcgtgataca
     3601 aaaatcactt ttatcgatat gcttggcatt ttggattttt ttacctgcat caatgatttt
     3661 attgatatga gtttgaaaag cattgcggta gcttggtgtt gcaccaaaaa tcgtaataga
     3721 tgccttattt aaagcaaaag ccaaatgtgt tggaccacta tcatttccta tgataagatt
     3781 catcattttt gtaaaagcca ttagctcttc aaggctgaat tttggtgcta attctatatg
     3841 tgtttcatca ataccactaa gatttaaaac ctctttggca aattcgtatt cttttacatt
     3901 tccccaagcg agccaaattt ttgcttgttg aaattcattg attaaaagtt tgcaaagtat
     3961 agcaagtttg gttttaggat agattttatt ttctacactt gagcccacat gtatgagtat
     4021 gtttttttcg tttttgtcga gtttgagttt attatttaag agttgtttta aattttcatc
     4081 tacgctaaaa atatcttgtt taaaggctaa atttttgaca ttaaaatcag tatttaacat
     4141 aaaggaggta agacttaagt atcttacaaa tacattttca ttgtaatcta actcaagttt
     4201 ttggttgtag aaattatgag caaaactttc tttaagacta tttttatcaa aaccaaaatt
     4261 atttctactt aaaattcgac ttacaatagc agattttatg agcccttgta gatctattac
     4321 tgcattatag ttgttttttc ttgctttaag aagaattttt aggcttttta aatttttttt
     4381 gtcttttaag ggcagggcat agagtttgtc tattaaagga tggtttttaa gtatgccttc
     4441 aaatttttca tctacaaacc aatgaatttc tatatctttt ttaaaatttt tgataaattg
     4501 caaaaccacg gcactttgta taatatcacc aagtgctgac aaacgaacaa ttgctatttt
     4561 cattaaaagc ctaatatttt aaaatttttt gctatgattt tagcgaaatt atttaaaaaa
     4621 aggttaaaaa tggcaaaaaa tgaaggttat atttgtgttt ttgattgtga gagtgtgcca
     4681 gatgttgagc ttatccgcaa aactttgggt tttgaaggaa gtgatttaga ggtaagttta
     4741 aaagcacttc agtggcaaaa agaacaaagt gggagtgagt ttttgccttt gccttatcat
     4801 aaaattatca gtatttgtgc ggttttaagt gataattttg gaaaatttat caaagtaaat
     4861 aaaattgatg ggcaaaatga aaaagaaatg attgctaatt tttttaattt tatagaaaat
     4921 tatgagccaa aattagtcag ttttaatggt aaaaatttcg atatgcctgt tcttgtttta
     4981 agggctttaa aatacaattt aaaagcagca acttatttgg atactcaaag tgataaatgg
     5041 aataattata aaacaagatt ttcagaatta aaacattgtg atttattaga atccttagga
     5101 tctaacgggc gtggaataaa gcttgataca ctttgttcta tggtgggttt gccaggaaaa
     5161 tatgatgtgc atggcgatga ggtgatgaaa cttttttatg aaaatgaact tgaaaaaatt
     5221 cacgaatatt gtgaaagtga tgttttaaac acctatatgc tttttttaaa atatgaactt
     5281 attaaagcta atgttagtga agaagattat gttgattttc tttcttatat gagagatttt
     5341 ttgcgtgaaa aaaaatcaga tcgttcctat acagaagttt ttgcaaaagc ttgtgagagt
     5401 gaaatttcaa aagttcaatc ttaagtattt aagaaaatat attaaaattt atttttgaca
     5461 ttttttaaaa aaaggaatga tgatgaaaat tcttattagc ggtggtgcag gttatatagg
     5521 ttctcatact ttaagacaat ttttaaaaac agatcatgaa atttgtgttt tagataatct
     5581 ttctaagggt tctaaaatcg caatagaaga tttgcaaaaa ataagagctt ttaaattttt
     5641 cgaacaagat ttaagtgatt ttcaaggcgt aaaagcattg tttgagagag aaaaatttga
     5701 cgctattgtg cattttgcag caagcattga agtttttgaa agtatgcaaa atcctttaaa
     5761 atattatatg aacaacactg ttaatacgac aaatctcatc gaaacttgtt tgcaaactgg
     5821 agtgaataaa tttatatttt cttcaacggc agccacttat ggcgaaccac aaactcccgt
     5881 tgtgagcgaa acaagccctt tagcacctat taatccttat gggcgtagta agcttatgag
     5941 cgaagaggtt ttgcgtgatg caagtatggc aaatcctgaa tttaagcatt gtattttaag
     6001 atattttaat gtcgcaggtg cttgcatgga ttatgcttta ggacaacgct atccaaaagc
     6061 gactttgctt ataaaagttg cagctgaatg tgccgcagga aaacgtgata aacttttcat
     6121 atttggcgat gattatgata caaaagatgg tacttgcata agagatttta tccatgtgga
     6181 tgatatttca agtgcgcatt tagcggcttt ggattattta caagagaatg aaagtaatgt
     6241 ttttaatgta ggttatggac atggttttag cgtaaaagaa gtgattgaag cgatgaaaaa
     6301 agttagcgga gtggatttta aagtagaact tgccccacgc cgtgcgggtg atcctagtgt
     6361 attgatttct gatgcaagta aaatcagaaa tcttacttct tggcagccta aatatgatga
     6421 tttagagctt atttgtaaat ctgcttttga ttgggaaaaa cagtgttaaa aaaacttttt
     6481 tttattttaa gcaaggaaga taaaaatttt ttattttttt tgcttgtttt ttcagtattt
     6541 gtttctttta tagaaacttt tgcgatttct ttggtaatgc cttttatcac tttggccagt
     6601 gatttttctt attttgatcg taataaatat ttaatcagct taaaagaata tcttaatatc
     6661 cctgtttttg aaatcattgt ttattttgga gtggggctta ttgtttttta tgtgtttaga
     6721 gctttgttaa atgcgtatta ttttcatctt ttagcaagat tttctaaagg gcgttatcat
     6781 gtgatcgctt ataaggtttt ttctaaattt ttaaatatta attatgaaaa atttactcaa
     6841 aaaaatcaat ctgaaatttt aaagtccatt acaggggaag tttataatct aagcactatg
     6901 atttcatcat ttttactttt gatgagtgaa atttttgtag tgcttttgct ttatgcttta
     6961 atgcttttga ttaattataa aatcacttta tttttaagta tttttatggt gttaaatgcc
     7021 tttattttag tgaaaatttt aagccctatc attaaaaaag caggagtaag acgcgaagaa
     7081 gcgatgaaaa atttctttga aattttaaat acaaatttaa ataatttcaa atttattaag
     7141 cttaaaacca aagaagatgg agtattaagt ctttttaaag cgcaaagtga agctttttct
     7201 aaagcaaata ttaccaacga aagcgtagct gcggtaccta gaatttatct tgaaggaata
     7261 ggcttttgcg tacttgtttt tatcgtggta tttttggttt tgaaaaatga aagtgatatt
     7321 tcaggtattt tatccacgat ttctattttt gttttagcgc tttatcgctt aatgccaagt
     7381 gcaaatcgta ttattacaag ttatcatgat ttgctttatt atcattcttc tttggatatt
     7441 atttatcaaa atttaagaca agaagaagaa aatttgggcg aggaaaaatt aagctttaat
     7501 caagagctta aaatttgcaa tcttagcttt ggttatgagg gaaaaaaata tttatttaaa
     7561 aatcttaact taaatattaa aaaaggcgaa aaaatcgctt ttatagggga gagtggttgt
     7621 ggaaaaagta ccttagtaga tcttatcata ggacttttaa aaccaaaaga agggcaaatt
     7681 ttaattgatg agcaagaatt aaatgcaaat aatacaaaaa attatcgcca aaaaataggc
     7741 tatatcccgc aaaatatcta tctttttaat gacagtatag ctaaaaatat cacttttgga
     7801 gatgcggttg atgaagaaaa acttaatagg gttatcaaac aagcaaattt agagcatttt
     7861 ataaaaaatt tatctcaagg agtgcaaaca aaagtgggtg atggggggag taatttaagc
     7921 gggggacaaa aacaacgcat agctatagca agagctttat atttagagcc tgaaatttta
     7981 gtgcttgatg aagcaacttc tgctcttgat actcaaagtg aagcaaaaat catggatgaa
     8041 atttataaaa tttctaaaga taaaaccatg attattatcg cacatcgcct ttctacgata
     8101 acgcaatgtg ataaggttta tcgtttagaa cacggtaagc ttaaagagga gaaatgatga
     8161 aaataagctt tattatcgca actttaaatt caggaggcgc tgagcgtgtt ttagtaacct
     8221 tagttaatgc actttgcaaa gagcatgaag taagtattat taaatttcat gcaggagaat
     8281 ctttttataa gcttgaaaat gaagttaaag ttacaagttt agaacaattt agatttgata
     8341 cgctttatca taaaattgca agtcgtttta agaaattttt tgctttaaga aaggctttga
     8401 aagaaagtaa ggctgatgtt tttatttctt ttttggatac gactaatatt gcttgtattg
     8461 ctgcgaaaat agggtttaaa actccactca ttataagtga gcatagcaat gaagtgtatt
     8521 taaaacctaa aatttggcgt tttttaagaa gggtaagcta tcctttttgt gatgctttaa
     8581 gtgtgcttgg aagcagtgat aaggtgtatt atgaaagatt tgtaaaaagg gttaggcttt
     8641 tattaaaccc ttgtcatttt agcgatgaaa ttccttttga ttctagtttt gaaaaggaaa
     8701 atttggttct ttttataggg cgtttagatc acaacaaaaa ccctgcaatg tttttaaaag
     8761 ctatagcgca tttggataaa aatttgcaag aaaattataa atttgttata gcaggagatg
     8821 gagagttaag gcaagaactt gaatacaagg caaaatcttt aggaataaaa gttgattttt
     8881 taggacgagt tgaaaatgtc aagactcttt gtgaaaaagc aaaagtgctt tgtctttgtt
     8941 cttttgtaga gggtttgcca acggttttaa ttgaaagttt gtattttgag gtttgtagaa
     9001 tttcaagttc ttattataat ggtgctaagg atttaatcaa agataatcat gatgggcttt
     9061 tgataggttg tgatgatgaa atagcacttg ctaaaaaact tgaacttgtt ttaaataatg
     9121 aaaattttag aaaagaactt gtaaataatg ccaaacaaag gtgtaaggac tttgaaattt
     9181 ctcatatcaa agaagaatgg cttaagctta tagctgaggt taaaaatgcc taaactttct
     9241 gttatagtac caacttttaa tcgtcaagtt ttactagaaa aggctattaa aagcatacaa
     9301 aatcaagatt ttaaagattt agaaattatt gtaagcgatg ataattctag cgatgatact
     9361 aaaagtgtgg tgcaaaattt acaaaaagat gatgatcgca ttaagtattt tttaaatcaa
     9421 aattacaaac aaggcccaaa tggcaataaa aataatggct tagatcaagc aagtggcgag
     9481 tttgtaactt ttttagatga tgatgatgag cttttatctg gggctttaag taccttgatg
     9541 caaaaagcaa atgagggtta tgctcatgtt tttggaaatt gtttgataga aaaagaagga
     9601 aatttaagca aggaatttag cggtaagggc ttggaaaaag atagtgaaat ttctaaaaaa
     9661 gattttttaa tggctaaatt tagcggagag tttttttctg tttttaaaaa atctctactt
     9721 gaaaacaagc gttttaatga agaattttat ggcaatgaag ccacgctttg ggtaaattta
     9781 tacaaggaaa aaagttttta tatccataag gcttttagga tttataggat ttttaggcaa
     9841 gatagcgtga ctttgggtgc gagtaaaaat gctcataggg tgtatttggg atatttagag
     9901 cttgctaaaa ttttagaaaa tgaacttaga atgagtaagg ataaagatta taaaaaaact
     9961 tgtgcgagtt attataaaat ggcagcttat tatgcaaaac tggcaaaaaa ttataaagcc
    10021 ctttataaat gtttgtttaa aagcctgagt ataaaaatca atgctcctgc tttgatatta
    10081 ctcattttaa gtataattcc aaataatatg attgaaaaat tatcaaaaat tcgggtggct
    10141 ttatgcaaaa attaggcatt tttatttatt ctttaggaag tggtggtgct gaaagagttg
    10201 tggcgacttt attgcctatt ttaagtttga aatttgaagt gcatttgatc ttgatgaatg
    10261 ataaaatttc ttatgaaatt ccagagtgtc aaattcattt tttagaatgt tcaaaaccta
    10321 gtgaaaatcc tattttgaaa tttttaaaac tacctttttt ggctttaaaa tacaaaaaac
    10381 tttgcagcaa tttgggtatt gatacagaat ttgttttttt aaatcgacct aattatatag
    10441 ccttaatagc aagaatgttt ggaaataaaa cccgccttgt gatcaatgaa tgcactacgc
    10501 caagtgtgat gtatgcgaaa aataatttta attctttggc aaataaattt ctaatttctt
    10561 tactttatcc aagagctgat ttaatcttgc ctaattctaa gggaaattta gaagatttag
    10621 tgcaaaattt tagtataaaa ccaaaaaaat gtgaaatttt atacaatgcc atcgatttag
    10681 aaaacatagg gcaaaaagcc cttgaagaca tagctttaaa agataaattt attttaagtg
    10741 taggcaggct tgataaaggt aaaaatcatg ctttattaat tcgtgcttat gcgagattga
    10801 aaacaggttt aaagcttgtg attttaggtg aaggtgtgct taaagatgag cttttagctt
    10861 tgattaaaga attaaatttg gaagaaaagg ttttgctttt aggatttgat aataatcctt
    10921 ataaatacat ggctaaatgc gaattttttg cttttgcttc tgtgtttgaa ggtttttcaa
    10981 atgttttaat cgaaagtttg gcttgttctt gtgcggtggt ttgcactgat cataaaagtg
    11041 gtgcaagaga gctttttggc gatgatgaat ttggactttt agtagaagta gataatgaaa
    11101 actctatgtt tcagggttta aaaactatgc ttgaagacga taaattaaga aaagcgtata
    11161 aaaacaaagc taaaactagg gctaaagcct ttgataaagt aaaaattgca cgcgatgctt
    11221 tgaaatattt attaggataa aagatgttga aaaaagagta tttaaaaaac ccttatttag
    11281 ttttgtttgc gatgattata ttagcttatg tttttagtgt attgtgtaga ttttactgga
    11341 tttggtgggc aagtgagttt aatgagtatt ttttcaataa tcaattaatg atcatttcaa
    11401 acgatggcta tgcctttgct gagggcgcaa gagatatgat agcaggtttt catcagccta
    11461 atgatttgag ttattatgga tcttctttat ctacgcttac ttattggctt tataaaatca
    11521 cacctttttc ttttgaaagt atcattttat atatgagtac ttttttatct tctttggtgg
    11581 tgattcctat tattttacta gctaatgaat acaaacgtcc tttaatgggc tttgtagctg
    11641 ctcttttagc aagtgtagca aacagttatt ataatcgcac tatgagtggg tattatgata
    11701 cggatatgct ggtaattgtt ttacctatgt ttattttatt ttttatggta agaatgattt
    11761 taaaaaaaga ctttttttca ttgattgcct tgccattatt tatagggatt tatctttggt
    11821 ggtatccttc aagttatact ttaaatgtag ctttaattgg acttttttta atttatacac
    11881 ttatttttca tagaaaagaa aagatttttt atatagctgt gattttgtct tctcttactc
    11941 tttcaaatat agcatggttt tatcaaagtg ccattatagt aatacttttt gctttatttg
    12001 ctttagagca aaaacgctta aattttatga ttataggaat tttaggtagt gcaactttga
    12061 tatttttgat tttaagcggt ggggttgatc ccatacttta tcagcttaaa ttttatattt
    12121 ttagaagtga tgaaagtgcg aatttaacac agggctttat gtattttaat gttaatcaaa
    12181 ccatacaaga agttgaaaat gtagatttta gcgaatttat gcgaagaatt agtggtagtg
    12241 aaattgtttt cttgttttct ttgtttggtt ttgtatggct tttgagaaaa cataaaagta
    12301 tgattatggc tttacctata ttggtgcttg ggtttttagc cttaaaaggg gggcttagat
    12361 ttaccattta ttctgtacct gtaatggctt taggatttgg ttttttattg agcgagttta
    12421 aggctatatt ggttaaaaaa tatagccaat taacttcaaa tgtttgtatt gtttttgcaa
    12481 ctattttgac tttagctcca gtatttatcc atatttacaa ctataaagcg ccaacagttt
    12541 tttctcaaaa tgaagcatca ttattaaatc aattaaaaaa tatagccaat agagaagatt
    12601 atgtggtaac ttggtgggat tatggttatc ctgtgcgtta ttatagcgat gtgaaaactt
    12661 tagtagatgg tggaaagcat ttaggtaagg ataatttttt cccttctttt gctttaagca
    12721 aagatgaaca agctgcggct aatatggcaa gacttagtgt agaatataca gaaaaaagct
    12781 tttatgctcc gcaaaatgat attttaaaaa cagacatttt acaagccatg atgaaagatt
    12841 ataatcaaag caatgtggat ttgtttctag cttcattatc aaaacctgat tttaaaatcg
    12901 atacaccaaa aactcgtgat atttatcttt atatgcccgc tagaatgtct ttgatttttt
    12961 ctacggtggc tagtttttct tttattaatt tagatacagg agttttggat aaacctttta
    13021 cctttagcac agcttatcca cttgatgtta aaaatggaga aatttatctt agcaacggag
    13081 tggttttaag cgatgatttt agaagtttta aaataggtga taatgtggtt tctgtaaata
    13141 gtatcgtaga gattaattct attaaacaag gtgaatacaa aatcactcca attgatgata
    13201 aggctcagtt ttatattttt tatttaaagg atagtgctat tccttacgca caatttattt
    13261 taatggataa aaccatgttt aatagtgctt atgtgcaaat gtttttttta ggaaattatg
    13321 ataagaattt atttgacttg gtgattaatt ctagagatgc taaggttttt aaacttaaaa
    13381 tttaagggtt gaaaatgaga ataggatttt tatcacatgc aggagcaagt atttatcatt
    13441 ttagaatgcc tattataaaa gcattaaaag atagaaaaga tgaagttttt gttatagtgc
    13501 cacaagatga atacacgcaa aaacttagag aacttggttt acaagtaatt gtttatgagt
    13561 tttcaagagc tagtttaaat ccttttgtgg ttttaaagaa ttttttttat cttgctaagg
    13621 ttttgaaaaa tttaaatctt gatcttattc aaagtgcagc acataaaagc aatacctttg
    13681 gaattttagc agcaaaatgg gcaaaaattc cttatcgttt tgctttggta gaaggcttgg
    13741 gatcttttta tatagatcaa ggttttaagg caaatttagt gcgttttgtt attaataatc
    13801 tttataaatt aagttttaaa tttgcacacc agtttatttt tgtcaatgaa agtaatgctg
    13861 agtttatgcg gaatttagga cttaaagaaa ataaaatttg cgtgataaaa tctgtaggga
    13921 tcaatttaaa aaaatttttt cctatttatg tagaatcgga aaaaaaagag cttttttgga
    13981 aaaatttaaa catagataaa aaacccattg tacttatgat agcaagagct ttatggcata
    14041 aaggtgtaaa agaattttat gaaagtgcta ctatgctaaa agacaaagca aattttgttt
    14101 tagttggtgg aagagatgaa aatccttctt gtgcgagttt ggagttttta aactctggcg
    14161 cagtgcatta tttgggtgct agaagtgata tcgtagaact tttgcaaaat tgtgatattt
    14221 ttgttttgcc aagctataaa gaaggctttc ctgtaagtgt tttggaggca aaagcttgtg
    14281 gtaaggctat agtggtgagc gattgtgaag gttgtgtaga ggctatttct aatgcttatg
    14341 atggactttg ggcaaaaaca aaaaatgcta aggatttaag cgaaaaaatt tcacttttat
    14401 tagaagatga aaaattaaga ttaaatttag ctaaaaatgc cgcccaagat gctttgcaat
    14461 acgatgaaaa taatatcgca cagcgttatt taaaacttta tgatagggta attaagaatg
    14521 tatgaaaaag tttttaaaag aatttttgat tttattttag ctttagtgct tttagtactc
    14581 ttttctccgg tgattttaat cactgcttta cttttaaaaa tcactcaagg aagtgtgatt
    14641 tttacccaaa atcgccccgg gttagatgaa aaaattttta aaatttataa atttaaaacc
    14701 atgagcgatg aaagagatga aaagggtgag ttattaagcg atgagcttcg cttaaaagct
    14761 tttggaaaaa ttgttagaag cttaagcttg gatgagtttt tacaactttt taatgtctta
    14821 aaaggggata tgagttttgt gggacctaga cctcttttag tagagtattt atccctttat
    14881 aatgaagagc aaaaattgcg tcataaagtg cgtccaggta taacagggtg ggcgcaggta
    14941 aatggtagaa atgctatttc ttggcagaaa aaattcgaac ttgatgtgta ttatgtgaaa
    15001 aatatttctt ttttgcttga tttaaaaatc atgtttttaa cagctttaaa ggttttaaaa
    15061 cgaagtgggg taagcaaaga aggccatgtt acaacagaga aatttaatgg caagaactga
    15121 aaaaatttat atttatggtg ctagtggtca tgggcttgtt tgtgaagatg tggctaaaaa
    15181 tatgggttat aaagaatgta tttttttaga tgattttaaa ggaatgaaat ttgaaagtac
    15241 cttacctaaa tatgattttt ttatagccat aggaaacaat gaaattcgaa aaaagattta
    15301 tcaaaaaatt tcagaaaatg gctttaaaat tgtcaatctt atccataaaa gtgcacttat
    15361 aagtcctagc gcaatcgtgg aagaaagtgc aggaatttta atcatgcctt atgtagtgat
    15421 taacgctaaa gctaaaatag aaaaaggtgt gattttaaat acttcaagcg taattgagca
    15481 tgaatgtgtg ataggggaat tttctcatgt gagtgtggga gctaaatgtg cgggtaatgt
    15541 aaaaattggt aaaaattgtt ttttagggat taattcttgt gttttgccta atttaagttt
    15601 ggcagatgat agtattttag gtggtggagc aactttagtt aaaaatcaag atgaaaaagg
    15661 tgtttttgtg ggagtgcctg caaaaagaaa aatatgaaat gattataaaa agatttttgt
    15721 ttgattcttt gtaaattttt ttaggtaaaa tagagtcaat ttataaaaat tttgttttac
    15781 acaaaggata aatcatgaga ttttttcttt ctcctccgca tatgggtggt aatgaattaa
    15841 aatatataga agaagttttc aaaagcaatt atatagcacc tttgggtgaa tttgtaaatc
    15901 gctttgaaca aagtgtcaag gcttacagta aaagtgaaaa tgccttagct ttaaattcag
    15961 ccacagcggc tttgcattta gctttaaggg tggcaggggt aaaacaagat gatattgttt
    16021 tggcttcttc ttttactttt atcgcttcag tagcacctat ttgttatctt aaagcaaaac
    16081 ctgtatttat agattgtgat gaaacttata atatcgatgt agatttatta aagcttgcta
    16141 ttaaagaatg tgaaaaaaaa ccaaaagcat tgattttaac tcatctttat ggcaatgcgg
    16201 ctaaaatgga tgaaattgtt gaaatttgca aagaaaatga cattgtttta attgaagatg
    16261 ctgctgaagc tttaggaagt ttttataaga ataaagcctt aggaactttt ggagaatttg
    16321 gagtttattc ttataatggc aataaaatta tcaccacttc aggtggaggt atgcttatag
    16381 gaaaaaataa agaaaagatt gaaaaagcaa gattttatag cactcaagct agggaaaatt
    16441 gtttgcatta tgaacattta gattatggtt ataattaccg cttaagcaat gttttaggag
    16501 ctattggcgt agcacaaatg gaggttttag aacaaagagt gcttaaaaaa agagaaattt
    16561 atgagtggta taaagaattt ttaggagagt attttagctt tttagatgaa ttggaaaatt
    16621 caagaagcaa tcgctggtta agtacagctt tgattgattt tgataaaaat gaacttaatt
    16681 cttgtcaaaa agatataaat atcagtcaaa aaaatattac tttgcatcca aaaatttcaa
    16741 aactcataga agatttgaaa aatgaacaaa tagaaacaag accattatgg aaagctatgc
    16801 acgctcaaga agtatttaaa ggagctaagg cttatcttaa tggcaatagt gagttatttt
    16861 tccaaaaagg aatttgtttg ccaagtggca cggcgatgag taaagatgat gtttatgaaa
    16921 tttcaaaact gatcttaaag agcataaagg cttaaaatga ttttttataa aagcaaaaga
    16981 ttagcatttt ttttaacttc agatattgtt ttaattttac ttagcgttta tctggctttt
    17041 tctttgagat ttagtggaga tattccgagt attttttatc atggtatgat ggtttctgct
    17101 attattttgc ttgttttaaa acttttattt ttgtttgttt ttagaattta taaagtagct
    17161 tggagatttt tttctctcaa tgaagcaaga aagattttta tcgctttgct tttagctgag
    17221 ttttgttttt ttcttatttt ttattttttt agtgattttt ttaatccttt tccaagaagt
    17281 gctattgtga tagattttgt tctttcttat atgtttatag gtactttaag aattagcaaa
    17341 agaatgcttg tggattttaa accttctaga atgaaagaag aagaaactcc ttgtattgta
    17401 gtaggggcaa cttctaaggc tttgcatttg ttaaaaggtg caaaagaagg ttctttaggg
    17461 ctttttcctg taggcgtagt tgatgcgaga aaagagctta tagggactta ttgtgataaa
    17521 tttattgtag aagaaaaaga aaaaataaaa tcttatgtag aacaaggggt aaaaactgcc
    17581 attattgctt taagacttga acaagaagag cttaaaaaac tttttgaaga acttgtagct
    17641 tatggtattt gcgatgtaaa aatattttct tttacaagaa acgaagcaag agatatcagt
    17701 atagaagact tgcttgctag aaaaccaaaa gatttagatg atagtgctgt ggcggctttt
    17761 ttaaaagaca aggtagtttt ggtaagtgga gcaggtggaa ctataggcag tgaactttgt
    17821 aagcaatgta ttaaatttgg tgctaagcat cttattatgg ttgatcatag tgagtataat
    17881 ctttataaga tcaatgatga tttaaattta tataaagaaa aaattactcc tattttactg
    17941 agtattttag ataagcaacg tttagatgag gtattaaaaa cttataaacc cgagcttatt
    18001 ttacatgcag ccgcttataa acatgtgcct ctttgcgaac aaaatccaca ttcagcagta
    18061 atcaataata ttttaggaac caaaatttta tgcgacagtg ctaaagaaaa taaagtagct
    18121 aaatttgtga tgataagtac agataaagca gtgcgaccaa caaatattat gggctgtact
    18181 aaaagagttt gcgagcttta tactttaagt atgagtgatg aaaattttga agttgcttgt
    18241 gtgcgttttg gtaatgtttt aggttctagt ggtagtgtga taccgaaatt taaagcacaa
    18301 attgccaata atgagccttt aactttaacg caccctgata tagtgcgtta ttttatgctt
    18361 gtggctgagg cagtgcaact tgttttacaa gctggggcta tcgcaaaagg gggagaactt
    18421 tttgttttgg atatgggtag gcctgtgaaa atcatagatt tagctaaaaa aatgctttta
    18481 ctttctaatc gcaatgattt agagattaaa atcacaggct taagaaaagg tgagaagctt
    18541 tatgaagagc ttttgattga taaaaatgat gctaaaacgc aatatgagag tatttttgta
    18601 gcaaagaatg agaaggttga tcttgattgg cttaataaag agatagaaaa tttacaaata
    18661 tgtgaagata tttcagaggc tttattaaag attgtacctg aatttaaaca caataaagaa
    18721 ggtgtataat gtatataaaa gatatacaaa gatttgaaga taatcgctat cgtgctagag
    18781 cttatatgag ttatatttta acaagaaatc tacccaataa acttcctgac attcaccttg
    18841 aaacgattaa aacagctttg gataaaatag ctcatgaagt tgttgttttt gatgctttgt
    18901 atattttaga tatttcaggc atgcaaatag aaaatgcgat ttccttaaat aaagctcatg
    18961 aaatagggca gggtgaggat agaagtactc gttcttattt ttatagagct gtaaaattaa
    19021 gacgatgtgt tttaagcgat ccttatcctt cggttttaaa taatgagctt tgcgtgacag
    19081 cttctatgcc aatttacgat gataaaaata atttgctttt tgttgtttgt attgatatca
    19141 agcttgaaga tattttaaag attattcaag caggaaaatt tgagtttgtt tttactcaat
    19201 ttagtcgttc ggtatatttt tgcttcgcac tggttttatt tgtgattact tgttttttat
    19261 ttcaaaaagg tttttttagt ctttttgata atcaagctat aggtatagaa catatgtttg
    19321 aaagtaccat cgctataact ttggctttag ctatttttga tttggcaaaa actttgatcg
    19381 aacaagaagt attaggaagg acaaaaaaag aagaaggtgg aattcaaaaa actatggtga
    19441 gatttttggg ttctattatc attgctttag ctatagaagc tttgatgttg gtatttaaac
    19501 ttgctattgg tgatctttct cagatgattt atgcgattta tcttatcggt ggagtgagct
    19561 tgcttctttt aggtttaagt gtatatttat ttacggttaa gtataaaaat aataatattt
    19621 gagtaaaaat ttaagtaaaa gatgatataa tgctgttttt taaaattttt tagcttgatt
    19681 aataaggcta aaaagggtaa aataaaacta taaaaacttt gaaaggacga aattgtgaaa
    19741 ttgttagttg ttgatgacag ttctactatg agaaggatta ttaaaaatac cctaacaaga
    19801 cttggacacg atgatgtttt agaagctgag catggcgttg aagcttggga tttattaact
    19861 aaaaatgaag atgtaaaagt tttaattaca gattggaata tgccagaaat gaatggcttg
    19921 gagttggtaa aaaaagtaag agcagagaaa aaatatgaag atatgcctat catcatggtt
    19981 acaactgagg gcggaaaagc tgaagtgatt actgctttaa aagctggcgt aaataactat
    20041 attgtaaaac cttttactcc acaagtttta aaggaaaaac ttgaagatgt tttaggaaca
    20101 ggaagtggag aaggtgcagc tgagtaaagg ctgattttta aaattctaaa tgcaaaaaaa
    20161 atattatgaa ttgttcttta tcgtagaaga gcggtataaa aatttatttc ttgattttgc
    20221 ttttgattta ggtatagaag ccatagaaga gaaagataat ggtgtttaca ttagatccca
    20281 tgagagttta gaagagtttt catgggcact tgaaatattt gctcaaaaac ttacaactac
    20341 tttcaattta aaccataaaa ttatttctaa tttaagtctt gtagagaaag aaaacaagga
    20401 ctggatacaa gaatataaaa aaggcataaa acctatctta gtggataatg tttacatcca
    20461 tacaacttgg caagaagaaa agaagaattg tataaatata aagattaatc cagccttagc
    20521 ctttggctca ggacatcacg aaagcacata ttcttgtgta aaatttttac aaaaattttc
    20581 taaaagtaaa ttaagagctt tagatcttgg ttgtggtagt ggaattttgg gtattattat
    20641 ggcaaagttt ggttgtaatg ttgaaatttg tgatactgat gagttggcta ttgatagttc
    20701 tttagaaaat gcaagattaa atggtgtcga ttttcacaag gcttggtgtg gatctataga
    20761 taaagcaaat ggtttatata atctaattgt tgcaaatatc attgcagatg tgattttaat
    20821 tttagaaaaa gatattaaaa accatttaga agataatgct atacttattt tgtcaggaat
    20881 tttagataaa tattcaacaa gaattaaaga aaaatttcaa gatttggaac tcattgatga
    20941 aatgcaaatc aatgagtggt gtagttttgt atataaaaat aataaaaaag gataagtaat
    21001 gaataataat acccaaaata ataagggtaa tccgcagggt aataattttt ttaacaaaaa
    21061 tcccattttt atttttgcga tttttgcaat tgtaatgata attattttta agggattttt
    21121 tgatggtaat ggttcttttg gcggggcatt gaatggcaat gaagtaaata aaaatgtccc
    21181 ttattctgag ttaaaaaagc ttattgaaag tggacaaatc aatcaagtta gtataggaca
    21241 aacaacaatc aaagcgattt caagctctcg caatactgtt tatacagcaa aaaaagttaa
    21301 tgatcctgag cttgtgagtt tactagatag taaaaatatc gcttatggtg cgtattctga
    21361 aacaaattgg tttacggata tacttttttc atgggttttg ccagtattta ttttctttgg
    21421 tatttggatg tttttggcaa gtcgtatgca aaaaaatatg ggaagttcta tattgggtat
    21481 aggaagttct aagaagcttg taaattcaga aaaacctaaa gtaaaattta gcgatgtagc
    21541 tggtgttgaa gaagctaaag aagaagtaaa agaaattgta gattttttaa agtatcctga
    21601 aagatatatt aaattgggag ctaaaattcc aaaagggctt ttacttgttg ggcctccagg
    21661 tacaggaaaa actttgcttg caaaagcagt tgcaggtgaa gctgatgtgc cgttttttag
    21721 tgtttcaggt tcgtctttta tagaaatgtt tgtgggtgta ggtgcttctc gtgtgagaga
    21781 tttatttgaa aatgcaaaaa aagaagctcc tgctattgtt tttatagatg aaatagatgc
    21841 tattggtaaa agtcgtgcag caagtggcat gatgggtgga aacgatgaaa gagagcaaac
    21901 tttaaatcag cttttggctg aaatggatgg ctttgggaca gaaagttccc cagtcattgt
    21961 tttagcagca acaaatcgcc cagaagtttt agatgcagcg cttttaagac caggaaggtt
    22021 tgatagacaa gttttagttg ataaacctga ttttaaaggt aggtgtgata ttttaaaagt
    22081 gcacatgaaa gatgtcaaaa tctccccaaa agttaaagta gaagatatag cacgcttaac
    22141 cgcagggctt gcaggagctg atcttgcaaa tattattaat gaagcagcgc ttttagcggg
    22201 tagggattct aaaaaatatg tagaacaaaa tgatttagtt gaagctgttg aaagagctat
    22261 agcagggctt gagaagaaat cacgtcgtat taatgaaaaa gaaaagaaaa ttgttactta
    22321 tcatgaatgc ggtcatgctt tgattgctga aactaccaaa ggcgcaaaac gtgtaagtaa
    22381 ggtttctgtg attccgcgtg gtcttgcggc tttaggttat actttaaata ctcctgagga
    22441 aaataaattt ttaatgcaaa aacatgaact tatcgctgaa gtagatgtac ttttgggtgg
    22501 tcgtgcagct gaagaagtgt ttataggtga aatttcaacg ggtgcaagta atgatttaga
    22561 aagagcaacc gatatcataa aagctatgat ttctatgtat ggtatgagtg aaattgcagg
    22621 acttatggta cttgaaaaac aaagaaatac tttcttaagt ggtggacaaa ctatcaaaga
    22681 ttattctgaa aagatggcag aatctttaga tgattatgta aagaaaacct tggatgaacg
    22741 ctataaagat gttaaagata ctttaaatac ttataaggga gcgattgaga ctatggttgc
    22801 agccctttat gaagaagaaa ctattgaagg taataaagtg cgcgagatta ttaaagagtt
    22861 tgaggatcaa aatagtctac caactcgttt acaagaactc gaagaagtta aaactgaagt
    22921 taaagtagaa gaatgaaaga ttttattgca aaagatggat atttaagtct tattatttta
    22981 agcttaattt ttatttttgt gtggattttt tattcttttt ccatcttgct attagcatta
    23041 attgtaattt gtatttttct ttttagagcg cccaaaagag aacttgtttg tagtgatgaa
    23101 aaagctattt ttgcacctat ggatggtagg gttactaaaa tagaaaatat tcatcataaa
    23161 gatttgggtg aatgtgttga aattactatt aaaaatgctc tttatgatgc tgggaatttt
    23221 aatacacctt ttgcaatgtc tataatagat attcgtttac gacatgggct ttttttgtgc
    23281 agtgaattaa aatctgcaaa aatgatgaat gaaagagctt ttattttggc aaaagttaaa
    23341 gagaataaaa cgatagcctt gcgaatctat gcaggttctt ttgatagaaa attaaagctt
    23401 gataatattt ctcatgattt aaaagcagga gatagaatgg gttttttaat taatggctct
    23461 ataagtttac ttttaccaaa agatactaga attcatatag gcttaaatga tgaaattaaa
    23521 gcaggttcat tgctaggcta ttttgcgtaa ggaaaaataa tgaataacag accgcaacta
    23581 atttatattt tacccaatct ttttacagct gcttcagctt ttttaggggt tatttctatt
    23641 atagcttcaa tacatggaaa ttattataca gctttgattt atattatttt atctttgatt
    23701 tgcgatgggc ttgatggccg tgttgcaaga cttacaaatt ctacttcaaa atttggagta
    23761 gaatttgatt ctttggctga tctagtagct tttggagttg ctccagcggt tcttttttat
    23821 atggcgatag gttatgattt tggaaaactt ggatctttga ttacagcttt ttttgtggtt
    23881 tttggagcta ttcgtttggc gagatttaat gttaccacag gcacttatga accctccgtt
    23941 tttataggtc ttcctatacc tactgcagca gttgtgagtg ctatatggac ttatgcgttt
    24001 atcagttatg attttttaaa gccttatggc gtagtttttt tggtgcttca agcaatttta
    24061 gggcttttaa tggtaagtaa tatacgttat cctagtttta aaaagcttga ttttaatcgt
    24121 tctagtgttt taaaagtttt gattatttta attataatat tttcattttt atatctttac
    24181 cctcttgaaa gtttagtaat tttagcaagc ttgtatgtgc tttatggaat tattcgggtt
    24241 ttatatacca ttatcgtttc aaaatttaag ataagaaatc aagagtaaaa tttttcaatg
    24301 acttcgcatt cttcttgagt gaagccagct ttgattcttg cttgaatgtt aagttttttt
    24361 cccgcaagag agaattgttt aaatgttttg caaagctcaa taaaatcata cctgttttga
    24421 tttgcaaatt tccaccaagt atctcctttt ttaacgtgtt ttatttcatc attaagtata
    24481 atttcaagat attccattag aagattttta atggaatgat tggaactttg aagtttttga
    24541 acaacaaagg ggttggcatc aagcccttta gcttctaaac ctctatgaac tactcccatt
    24601 ctaaagctta aagagtcttt tgtagcttct agagcagatt ctaaattatc atgcactgga
    24661 aaatttccat atttgtaact aagttcttta agtgctgaat ttaaaagttt gaaatgttta
    24721 atttcctcat ctgctacctc cagccaatcg taataaaatt gcaaaggtag attcttaaag
    24781 cgataactcg catctaaagc caggttaatt gcattaaatt ctatatgagc gactgaatga
    24841 attattttag caagcgcatg agttgaattg acaaatttag gccttcttat acgcgtagga
    24901 tgaagcaagg taatttgttg tgatgtattt tttttgaaaa tgctttgatg ctcgtgatta
    24961 aaaatcaatt tgtggctttt aaagtcttca taaaaatttt gaaaagagtg aaattttata
    25021 gttatatttt tttcatataa aatatcttga agttcttgaa aa
//
LOCUS       DBBXPZ010000018        24696 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.018, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000018 DBBXPZ010000000
VERSION     DBBXPZ010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24696)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24696)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24696
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.018"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..823)
                     /locus_tag="ACJFD7_000572"
     CDS             complement(<1..823)
                     /locus_tag="ACJFD7_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859413.1"
                     /translation="MKKIFLTLFCLIFLCACGTKRQYFEPKQTDGDLSHNSNLKSKIV
                     DWNLVSAKLSNNTAILKNNISIDKFKLPKNYMLLAYQDGEYFTADNNGNLKIFDNSYN
                     EIYNFQFDASVVGVASNGDDLALVLANNTIVLANRSLGIKFSQTLTSAPAQDSRTANP
                     IFLDNIIVYPTLDGKILILSRNNLQVIKDVVISAENFFNNVIHLSVIGDKLIAATAKK
                     IIVVSPARTLYLDADIKDVALSDDGIFILEKDGTIIKTDYNLRKIAEKKFEFAIFV"
     gene            complement(820..1398)
                     /locus_tag="ACJFD7_000573"
     CDS             complement(820..1398)
                     /locus_tag="ACJFD7_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859414.1"
                     /translation="MGLKDNLKAVQNELNTEEQFIENFIKGERFIRKYKFYISAVVII
                     LVAWFAGNFIISKINDYKTKEANEIYANLIQDPSNKNLLEQLKNKNTNLYAIFLLKEN
                     INDFNNTALQNELKQIYSNTQTNTLLKNIIALSLGDKSIFLKNYDKLLEAYKFLEQNK
                     IEEANVLLSQIKENSSLNQIAKNLKHYQGITQ"
     gene            1542..1826
                     /gene="gatC"
                     /locus_tag="ACJFD7_000574"
     CDS             1542..1826
                     /gene="gatC"
                     /locus_tag="ACJFD7_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA];
                     GO_process: GO:0006450 - regulation of translational
                     fidelity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HGG0859415.1"
                     /translation="MQIDEKLLSKLEKLSALQITKNRNETIAQLSEIVNFVEKLNELD
                     LDSQEITVSTIKGGAPLRIDEIRNSNVIDEVLDCAPKKQEHFFVVPKIIE"
     gene            1893..2456
                     /locus_tag="ACJFD7_000575"
     CDS             1893..2456
                     /locus_tag="ACJFD7_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009403 - toxin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HGG0859416.1"
                     /translation="MNFYWFDAFILGFTLLLGLKGIINGLIKEIFGLLGIIGGVFIAS
                     KYATQAAEFIQSTFYKIENQSLAGFAGFLAILIIFWIVCLLVGNFLSKLIKLSGLGFL
                     DRIGGFIFGGAKIFLIFAILVFCVARIDFLNDKLDNFAKNSYTLNLLKETGSFIMNQP
                     LTENSLDHASEKLQDIVSDLNNTQKGE"
     gene            2458..2931
                     /locus_tag="ACJFD7_000576"
     CDS             2458..2931
                     /locus_tag="ACJFD7_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HGG0859417.1"
                     /translation="MLIENVEYDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDTHY
                     TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELANKPHHDH
                     MICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQLYGVCGDCNNQKAKVKI"
     gene            2932..4437
                     /gene="lysS"
                     /locus_tag="ACJFD7_000577"
     CDS             2932..4437
                     /gene="lysS"
                     /locus_tag="ACJFD7_000577"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HGG0859418.1"
                     /translation="MFDNILEQQRIEKAKELKNLGINPYPHFLEKEMSLKTFKDKFSY
                     ILEQVEKRDESVNAVVAGRLKLLRIAGKSIFANIEDEDTNLQIYFSKDSVGEELYAIL
                     KKNLEVGDIVLAKGFPFVTKTGEFSLHASEVKLATKAIVPLPEKYHGLTDIEQRYRKR
                     YVDMIMNVEVRKDFLVRSKVVSLIRHFFENKGFLEVETPMMHPIAGGANAKPFVTFHN
                     SLGIERFLRIAPELYLKRLVVGGFEAVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHN
                     YKDLMDLTEELFALLLDKLNLGKTIEFDGKMIDFSKPFERITYKEALCKYGGLDRGLI
                     EDKEKILAKLKADGFEANEKLELGYLQAELFDNYVEEKLINPTFVIDFPISISPLSRR
                     SDEDSQIAERFELFICGRELANGFNELNDPLDQYERFLKQIEAKNAGDEEACEMDEDF
                     VNALGYGMPPTAGQGIGIDRLVMLLTNKKSIRDVILFPAMRPLKSELKEKE"
     gene            4434..5678
                     /locus_tag="ACJFD7_000578"
     CDS             4434..5678
                     /locus_tag="ACJFD7_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HGG0859419.1"
                     /translation="MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGS
                     ILTNKYAEGYPGKRYYGGCEFVDEIEILAIERCKKLFDCKFANVQPNSGSQANQGVYA
                     ALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE
                     KPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVV
                     SSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDE
                     WKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLVLMSFLDCEFSGKDADLALGNAG
                     ITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDINNEKLQ
                     ENIKQELKKLASNFIIYERAMF"
     gene            5675..6220
                     /locus_tag="ACJFD7_000579"
     CDS             5675..6220
                     /locus_tag="ACJFD7_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1882 domain-containing protein"
                     /protein_id="HGG0859420.1"
                     /translation="MISPMDMSLIKIIGDHYYIRRDKIVNKITHRGRLFFDKFERVDA
                     PLNLNVMREHAAKKIVVAHDLITKDNKVENIVFDYNGFNAERFYHRAQLILREEGFIN
                     FTAYKTKTPGHLHLYIHKGHTALNEGYSLASKLSMMFASKMPVEWKVFPSMDVPREFN
                     ILILPYEVYQKERGSSWSKHM"
     gene            6234..7058
                     /locus_tag="ACJFD7_000580"
     CDS             6234..7058
                     /locus_tag="ACJFD7_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HGG0859421.1"
                     /translation="MENQKNEFDDIILEKSNKSEKVKKILLRVIALVILFLAIMIVMK
                     LINGSGDENTQNQSVLPSEPIATQDNNNDTSFESMPITDNTSAEDQFEALRKQFQDEQ
                     NTTASSSNNNDSTNFAMPDQEVPAEPTAATSENTAPQASAPKQEVKQTVKPKEEAKKQ
                     IAVKKEKESAKQTPKKEQNANDLFKNVDAKPVHPSGLASGIYVQIFSVSNLDQKSKEL
                     ASVKQKGYDYKLYKTTVGGKEITKVLIGPFEKADIAAELAKIRKDIAKDAFSFTLK"
     gene            7055..7843
                     /locus_tag="ACJFD7_000581"
     CDS             7055..7843
                     /locus_tag="ACJFD7_000581"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004764 - shikimate 3-dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0019632 - shikimate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HGG0859422.1"
                     /translation="MKFLAVIGDPISHSKSPRMHNNAIKALGLDSIYTRYHLRNANCL
                     REDFFKLGLSGANITLPFKEKALDIADVKDDFARNIGSANTLCLKEDKIYAYNTDALG
                     FLEAIKDFDNIKKALILGAGGTALALAYALKQKGVEVYIANRSKERFKDFLAYPTYLY
                     KNLQDFDFDLVVNSTSAGLKDENLPCDRELLDGILPKAKFAFEVIYGRETPFYRLCKE
                     YHLKIKDGLDMLLWQGVFAFELFFEIRDKREMIKNAMQQALILK"
     gene            complement(7917..8816)
                     /locus_tag="ACJFD7_000582"
     CDS             complement(7917..8816)
                     /locus_tag="ACJFD7_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane lipoprotein lipid attachment
                     site-containing protein"
                     /protein_id="HGG0859423.1"
                     /translation="MKKYILLASSMLILAACGGTSSNFVNVSMPNFKPQVPTKVEPIN
                     SGVSITLEPINIEQNNNYSDYFENSVLKIRIEKEIDLLKQNLEEQIKTIAQLKGYKIV
                     TTNPDYTLKSSISIYTEEKNAQKTSNFMSGDYVKSNLGINFKGKIDFIDAHNPQNSTN
                     LSSSTKLDSLVALNYPIKNDDGVNMFKTTISTVPTQLNKGLEQPAFEIDKSFLAFYKN
                     TLNTLYNNLPKATDIGKTIPNTNSGFNSFDGDATFEESLPQTNSNQNNTIENTPTQNI
                     PTNPSSTNQNNQSKNQDGVEIFE"
     gene            8906..9721
                     /gene="lgt"
                     /locus_tag="ACJFD7_000583"
     CDS             8906..9721
                     /gene="lgt"
                     /locus_tag="ACJFD7_000583"
                     /EC_number="2.5.1.145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HGG0859424.1"
                     /translation="MEFWQHIYSNFNVIAFSIFGLKVHWYGIMYVIALLLALLLAKFF
                     VRKFQLDINEKHLDSYFIWVEIGVILGARLGYILIYDANTMYYITHPWQIFNPYINGE
                     FVGIRGMSYHGAIIGFLIATLLFCKKYKTNPWIFLDLVALSVPLAYVFGRIGNFLNQE
                     LFGRITNVPWGIYVDGVLRHPSQLYEAFLEGIVVFIIVYLARFKQSFQGELILVYAGA
                     YSLARFICEFYREPDFGIGFVLWGMSMGQILSFIMFITALLVYICIKFKKVNI"
     gene            9791..10573
                     /locus_tag="ACJFD7_000584"
     CDS             9791..10573
                     /locus_tag="ACJFD7_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase cytochrome b subunit"
                     /protein_id="HGG0859425.1"
                     /translation="MRELIEGYLGKSIEGKKSKMPAKLDFIQSASGLFLGLFMWVHML
                     FVSTILVSEDFFNSVVHFLELKFVYDNPVMSYLTSFLAACVLVVFFVHALLAMRKFPI
                     NYRQYQILRTHSKKMNHSDTSLWWVQAFTGFIMFFLGSAHLIFIVTNADKISGDMSGD
                     RVVSHFMWLFYAVLLVCVELHGSIGLYRLCVKWGWFERKNVKESRKKLKTAKWIISIF
                     FLVLGVLSLAAFIKIGYENYQNQTQTTAMIKNYNGANYEYTI"
     gene            10557..12548
                     /locus_tag="ACJFD7_000585"
     CDS             10557..12548
                     /locus_tag="ACJFD7_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase flavoprotein subunit"
                     /protein_id="HGG0859426.1"
                     /translation="MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHS
                     AAVQGGMQASLANGAKGEGDNEDLHFADTVKGSDWGCDQEVARMFAQTAPKAVRELAA
                     WGVPWTRVAKGPRTVVINAQKTVIEEKEEAHGLINARDFGGTKKWRTCYIADATGHCM
                     LYGVANEAIKHQVKIIDRMEAVRIIHDGKKCLGVIARDLTNGQLIAYIARGTMIATGG
                     YGRIYKQTTNAVICEGTGAAIALETGLCRLSNMEAVQFHPTPIVPSGILLTEGCRGDG
                     GILRDVDGYRFMPDYEPEKKELASRDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILG
                     RAHVEKNLRDVQDICKTFNGIDPADEGPKGWAPVLPMQHYSMGGIRTKPTGESQWLNG
                     LFACGEAACWDMHGFNRLGGNSCAETVVAGMIVGDYFADYCKNNGEVIDTNVVKDFLT
                     KEYQYLKSLVDKEGKYNVFEIKNRMKEIMWDKVAIFRTGEGLKEAVDELEKLYKDSQD
                     VKVHCKELDCANPELEEAYRVPRMLKIALCVAYGALLRTESRGAHYREDYPKRDDLNW
                     MKRTNTFWVEGETLPRIEYEELDIMKMEIPPAFRGYGAKGNIIENPLSEKRQAEVDAI
                     REKMEAEGKGRYEIQNALMPYELQAKYKAPNQRIGVDYE"
     gene            12541..13266
                     /locus_tag="ACJFD7_000586"
     CDS             12541..13266
                     /locus_tag="ACJFD7_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur subunit"
                     /protein_id="HGG0859427.1"
                     /translation="MSRKLTIKAFKYNPLSKISKPHFVTYELEETPFMTVFVCLTLIR
                     EKMDADLSFDFVCRAGICGSCAMMINGVPKLACKTLTKDYPDGVIELMPMPAFRHIKD
                     LSVNTGEWFEDMCKRVESWVHNEKETDISKLEERIEPEVADETFELDRCIECGICVAS
                     CATKLMRPNFIAATGLLRTARYLQDPHDHRSVEDFYELVGDDDGVFGCMSLLACEDNC
                     PKELPLQSKIAYMRRQLVAQRNK"
     gene            13294..15480
                     /locus_tag="ACJFD7_000587"
     CDS             13294..15480
                     /locus_tag="ACJFD7_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HGG0859428.1"
                     /translation="MKELFQKIWQNELQFLNFDAKFQDKNKLNTAECAIILSVNKDNY
                     ERYFLLKEFQELCKKIDLRVDIFSIQNAQICILNLLKSGFVPKQDLLKALKILEKISK
                     NTEMFDFISQEKVQSIDQKALFQNDFKELNTINLELQKLSFDENLKSRLQKTLEKFQN
                     LEFNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETANLTVLSYGKSEEAKIYFWDKK
                     EWQNILESSHFNADLKEFIDKLDKSVNIEDFIKDKPLIQNIALCELKNFSSAKNKISA
                     LIKKIEIKSHLDFLKNNISIVDTPGLDDVVVQREIVTNEYLRESDFLIHLMNASQSLT
                     QKDADFLVHCLLNSRLSKFLIVLTKADLLSKKDLEEVIVYTKESLKSRLVDLDENLVK
                     KIDFLCVSAKMASDFYKGLAPKESLQKSGMQEFENYLFNELYAGEKSKIALRAYKKEL
                     HLELKNILSKYEMQNRLIKENKQGVSEENQKLLLELQKQNILLKEAQDEISNSIVKLK
                     NIDNGIDNLVLLLAKKLKERLIDEFKYLKNNAQKLNLSRILNIVDITTKDGINDILRE
                     IKFENIKKIEELKTNLSLKYDFLKDDFDNGFEGFKDGISKNIDSIFQSEKFALLRLKI
                     EKLSNLKSDLYELETNLDTVIFDTFKEFKMSEILNSLNINGAFFEFLNDKLKHYEKNQ
                     KSKLESLEKVLQSLKNQDINILNSFEENLEKIEKLKQLEMGLLNAD"
     gene            15470..17299
                     /locus_tag="ACJFD7_000588"
     CDS             15470..17299
                     /locus_tag="ACJFD7_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HGG0859429.1"
                     /translation="MQINLLNDFIKAYENTYSVSFDDSFKGRIQELCKELNEPFMHAS
                     YALENELKELVFSLDKNVNIAIIGQFSSGKSSLLNLILGCDCLPTGVVPVTFKPTFLR
                     YAKEYFLRVEFEDRSDIITNIEKLAFYTDQRNEVKQAKSLHIFAPIPLLEKITLVDTP
                     GLNANENDTLATLDELKNIHGAIWLSLIDNAGKKSEEDAIKANLELLGENSICVLNQK
                     DKLNTEELDNVLNYAKSIFLKYFDELIAISCKEAKDEQSYEKSNFQSLLDFLTQLDTT
                     ALKEKFVKRKILNLCEILEDENQLFVGIFDRLLNQFQSYEKHLLLAYENFLKEIEILN
                     HQILEQLKSISERISSEIFASVKEKDAYFYKESKGFLKKDLYTRYDYKAPYISSDDAF
                     LAMFYNSDVMSKEFKKIKNELYKSFEEIKMKLKDFINILEREILLFKAEFSNIQKDHI
                     FQSDKNFSELRAFCNASDEYFLKDFKELLFKSILELDLFFEKLNLKAFTNYENATKLS
                     LAFFSRKINESRVLYELDSSEFVLFYPKKSEIYERVLNELNVYEFETLLINKPILTKI
                     AKNFLEQSQNLIQEKNKFLDLKKAELQKRRAQILNVRESIKED"
     gene            17299..18003
                     /locus_tag="ACJFD7_000589"
     CDS             17299..18003
                     /locus_tag="ACJFD7_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HGG0859430.1"
                     /translation="MRIFLTLFLFFNSLFALSELEEGLKLYEANKFDKAYEIFKSLCE
                     KDISKACFSLAFMHESARGVSKDLNQAYKFYDKACKLGLANACSNMALLLQNQGYENE
                     ALLAFNKACTLGESLSCNNIALFYEKEKDGQMASSFYKRSCDLKNARACYQLGSLYDK
                     GELVKASVKSALAFYSKSCTLGFGEACYLLGRYNQLEKQDLTKAKRYFGMACDQKHQE
                     ACAAYKELNSKDIELY"
     gene            18139..18867
                     /locus_tag="ACJFD7_000590"
     CDS             18139..18867
                     /locus_tag="ACJFD7_000590"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HGG0859431.1"
                     /translation="MQDNIIDRRSFFKLGLLGGSVVAASTIGGGAVLKAAELTHSHQA
                     SQGKSNKIRGRMFFQTQTEFDTLSAACERIYPKDEQGEGAIGLGVPYFIDNQLASAYG
                     YNDREYMQGPFMEGKAEQGYQTPMQRKDIFLEGVHALEENAQKRYKKSFSLLKGGDQD
                     KILSDFEKGKIQTTGFKSSYFFTLLRDMTVAGVLADPIYGGNDNKNGWRMMQYPGAQM
                     SYVDKIASDEFFNIEPMGLADMES"
     gene            18869..20590
                     /locus_tag="ACJFD7_000591"
     CDS             18869..20590
                     /locus_tag="ACJFD7_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HGG0859432.1"
                     /translation="MAEVLKKVDVVTVGAGWTGGIVAAELTKAGLNVLSLERGHMQST
                     ENFNYIHDEWRYGINYGLMQDCSKDTVTFRHDPSGLALPYRKMGSFLLGNNVGGAGVH
                     WNGWTFRFMPYDFEIQTLSKQRYGNKLGNDYTLQDWGVTYKDMEPYYDRFEKTCGVSG
                     EPNPLAEKMGAFRSSPYPQEPLENTKMLKRFESAAKSSNLHTYRLPASNSKGGYTNPD
                     GQDLAPCQYCAYCERFGCEYGAKASPLNTVIPKAMSTGKYTIRTYSNVTQILKKDGKV
                     TGVKFVDTRTMKEYIQPADIVVLTSYMFNNAKLLMVSNIGEQYDPKTGKGTLGRNYCY
                     QMNMGTTAFFDEQFNTFMGSGALGTTSDDFNGDNFDHSKEKFLHGAMIYSVQLGTRPI
                     QSAQLPAGAPTWGAEFKKALNYNFTRAITVAGQGASLPHKNNYLSLDPTYKDAFGMPL
                     LRLTYNFTDQDRALHKFITDKTAEVAKRMQGVKSIKKGAYLKDYSVVSYQSTHNTGGT
                     TMGADRETSVVNTYLQHWDADNLFVVGAGNFQHNSGYNPTDTVGALAYRCAEGILKYH
                     KSGKSLA"
     gene            20796..21492
                     /locus_tag="ACJFD7_000592"
                     /pseudo
     CDS             20796..21492
                     /locus_tag="ACJFD7_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867793.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(21599..22303)
                     /locus_tag="ACJFD7_000593"
     CDS             complement(21599..22303)
                     /locus_tag="ACJFD7_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative metalloprotease CJM1_0395 family
                     protein"
                     /protein_id="HGG0859433.1"
                     /translation="MQISSSYNSYDYYSSKPSFDKTNQSDSTQKDEKNLSENKDDKEK
                     NGEQTQMVNGVELSQKEVAQVRELQSIDRNVKAHEAAHQAAGGGLAGAASFTYTRGPD
                     NQMYATAGEVPISMQKGNTPEETIANARQIAAAAMAPADPSPQDYKVAANAAKMEFEA
                     RAEAMKLKAEEAKEKEEENKEKDDKNSENSLEKTDKDSKNNDKNSNFDKDFKNFVART
                     YQQNSQNNDIKFNIAS"
     gene            22411..22773
                     /locus_tag="ACJFD7_000594"
     CDS             22411..22773
                     /locus_tag="ACJFD7_000594"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HGG0859434.1"
                     /translation="MIYENDLIYIEKEEAQVPWLKIFTKEIYKEFSDCPLELQKELFE
                     KILLCEKAMIEFYKPEKINIASFANYVPRVHFHVMARFKEDAFFPECMWGKQQRETIK
                     LDLPKFEEFVKFLNSKIF"
     gene            22847..23419
                     /locus_tag="ACJFD7_000595"
     CDS             22847..23419
                     /locus_tag="ACJFD7_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HGG0859435.1"
                     /translation="MKKVLLSSLVAVSLLSTGLFAKEYTLDKAHTDVGFKIKHLQISN
                     VKGNFKDYSAVIDFDPASAEFKKLDVTIKIASVNTENQTRDNHLQQDDFFKAKKYPDM
                     TFTMKKYEKIDNEKGKMTGTLTIAGVSKDIVLDAEIGGVAKGKDGKEKIGFSLNGKIK
                     RSDFKFATSTSTITLSDDINLNIEVEANEK"
     gene            complement(23424..24380)
                     /locus_tag="ACJFD7_000596"
     CDS             complement(23424..24380)
                     /locus_tag="ACJFD7_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859436.1"
                     /translation="MFLLDFLISLSFIFEISALVLSFYFKNSKIFFLTLVLLGAKLPY
                     FYTSFFQANLFVALFLPMIFTLFCLGKHHVLILNKKNIASITTLISIGVLSIILPRNT
                     TFNSAGLEFHFITLNFFKPVSELGFLFFLVGLILIFIKTFKTKEYYLLIAFFAAYFQF
                     LFQEGTGIRYFEFASLVFCFYLLNHAYRLAFFDTLTKLPNEKSLTRFTKGKNNYIIAL
                     LHFNELKDTKESYTKLILKQIAKILKRFRAKIFIVENDFILIFNDKNQALNHLAFLES
                     TLKNTEFNLENENFKPDFKLIWQESEENLDKNLQSLRARLLD"
     gene            complement(24441..24650)
                     /locus_tag="ACJFD7_000597"
     CDS             complement(24441..24650)
                     /locus_tag="ACJFD7_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HGG0859437.1"
                     /translation="MTKKSKRDMAYELDIDVSTLYNWRKYKPNLYRIVMLGFKFDELL
                     ENSKKTHEELLHIEQTIQDEIAKFK"
BASE COUNT         8835 a         2934 c         4459 g         8468 t
ORIGIN      
        1 ttacaaaaat agcaaattca aatttttttt ctgcaatttt tcttaagtta taatcagttt
       61 taataatagt gccatctttt tctagtataa aaataccatc atcactaagt gcaacatctt
      121 ttatgtcagc gtcaagataa agagttctag cagggcttac aacaatgatt tttttagctg
      181 ttgctgctat aagtttatct ccgattacac ttagatggat tacattgttg aaaaaatttt
      241 ctgctgaaat aaccacatct ttaatgactt gaagattgtt tcttgaaaga attaaaattt
      301 tgccatctag cgttggatat acgatgatat tgtctaaaaa tataggatta gcggtacgac
      361 tgtcttgagc tggagctgag gttagggttt gactaaattt aatacccaaa gaacgatttg
      421 caagaactat agtattgttt gcaagtacaa gggctaaatc atctccatta gaagctactc
      481 ctacaacact agcgtcaaat tgaaaattat aaatttcatt ataagaattg tcaaaaattt
      541 ttaaatttcc attattatct gcagtaaaat attccccatc ttgataagct agaagcatat
      601 aatttttagg aagtttaaac ttgtctatgg agatattatt ttttaagata gctgtattat
      661 tgctaagttt tgcagaaact agattccaat caacgatttt actttttaaa ttgctattat
      721 gacttaaatc tccatcggtt tgttttggtt caaaatattg tcttttggtg ccacaagcac
      781 atagaaatat taaacaaaat agtgttaaaa atattttttt cattgtgtaa tgccttgata
      841 atgtttgaga tttttagcta tttgatttaa acttgaattt tcttttatct gagaaagtaa
      901 aacattagct tcttcgattt tattttgctc taaaaatttg taagcttcta ataatttatc
      961 ataatttttt aaaaatatcg atttatcccc taaagataat gcgataatat ttttaagtaa
     1021 agtgtttgtt tgagtattac tgtaaatttg ttttagttca ttttggagag ctgtattatt
     1081 aaaatcatta atattttctt ttagtaaaaa gatagcgtaa agattggtat ttttattttt
     1141 aagttgttct aaaagatttt tattgctagg atcttgtatt agattggcat aaatttcatt
     1201 tgcttctttt gttttataat cgtttatttt tgagattata aaatttccag caaaccaagc
     1261 aactaaaatt atcacaacag cagatatata aaatttatac ttgcgtataa acctctctcc
     1321 tttgataaaa ttttctataa attgttcttc cgtgttaagt tcattttgaa cagcttttaa
     1381 attatctttt agtcccaaaa tttatccttg aaaaaatatt tttatttttg tatagaaaaa
     1441 ttatgatatt gtatcatata aattgcaaaa tatcctaaac aatttaaagc tttttatgat
     1501 ataattttca aaattttaac ttttttatta aggtttaaga aatgcaaata gatgagaaat
     1561 tattaagcaa gcttgaaaaa ttaagtgctt tacaaataac aaaaaacaga aatgaaacta
     1621 ttgcacagtt aagtgaaatt gtgaattttg ttgaaaaatt aaacgaactt gatttagatt
     1681 cccaagagat tactgtgagt actataaaag gtggagctcc tttgaggatt gatgagataa
     1741 gaaatagcaa tgttattgat gaggttttag attgtgctcc aaaaaaacaa gaacattttt
     1801 ttgttgttcc taaaatcata gaatgattaa cttagcattt agtgcttatt tgtagaataa
     1861 atttaaaaca aaaaaatcag agagtgattg aaatgaattt ttattggttt gatgctttta
     1921 ttttaggatt taccttgctt ttagggctta agggtattat caatggtttg ataaaagaaa
     1981 tttttggact tttgggtatt attggtggtg tttttattgc ttcaaaatac gcaactcaag
     2041 cagctgaatt tatacaaagt actttttata agatagaaaa tcaaagctta gctggatttg
     2101 ctggattttt ggccatatta attatttttt ggatagtttg tttattggtg ggtaattttc
     2161 tttctaagtt gattaaatta agtggcctag gttttttaga tcgtattggt ggctttatat
     2221 ttggcggagc aaaaatcttt ttaatttttg caattttggt tttttgtgta gcaagaatcg
     2281 attttttaaa tgataaatta gataattttg ctaaaaatag ctatacttta aatttactta
     2341 aagaaacggg atcttttatt atgaatcaac ctttaacaga aaatagtcta gatcatgcta
     2401 gtgaaaagtt gcaagatatt gtaagtgatt taaacaatac tcaaaaaggg gagtgatatg
     2461 ctgatagaaa atgtggaata tgatgtttta cttgagagat ttaaaaaaat attaagacaa
     2521 ggcggactta aatataccaa gcaaagagaa gtgcttttaa aaactcttta tcacagtgat
     2581 actcattaca cacccgaaag tttatatatg gaaatcaaac aagctgaacc tgatttaaat
     2641 gtaggaattg caactgttta tcgtacttta aatttgcttg aagaagcaga aatggtaact
     2701 tccatttctt ttggttcggc aggtaaaaaa tacgagcttg ccaataaacc tcaccatgat
     2761 catatgatat gtaaaaattg cggaaaaatt atagagtttg aaaatcctat tatagaaaga
     2821 cagcaagcct tgattgcaaa agaacatggt tttaaactta cagggcattt gatgcagctt
     2881 tatggtgttt gtggtgattg taataatcaa aaagcaaagg taaaaatata aatgtttgat
     2941 aatattttag agcagcaaag aatagaaaaa gctaaggaat taaaaaattt agggatcaat
     3001 ccttatcctc attttttaga aaaagaaatg tctttaaaga cttttaagga taaattttct
     3061 tatattttag agcaagttga aaaaagagat gaaagtgtca atgctgttgt tgcaggacgt
     3121 ttgaaacttt tgcgtatagc tgggaaatcg atttttgcaa acattgaaga tgaggataca
     3181 aatttacaaa tttattttag taaagatagc gtaggtgaag aactttatgc gattttgaaa
     3241 aagaatttag aagtaggtga tattgttttg gctaaaggtt ttccttttgt aactaaaaca
     3301 ggtgagttta gtttgcatgc aagtgaagta aaactcgcta caaaagctat tgttccttta
     3361 cctgaaaaat atcatggatt aacagatatt gaacaaagat atcgtaaacg ttatgttgat
     3421 atgataatga atgtcgaagt tagaaaagat tttttagtgc gttctaaagt ggtgagtttg
     3481 attcgtcatt tttttgaaaa taaaggtttt ttagaagtag aaactcccat gatgcatccg
     3541 atcgcaggtg gagcgaatgc taagcctttt gtaacttttc ataattcttt gggtatagaa
     3601 agatttttaa gaattgctcc agaactttat cttaaaagac ttgtagtggg tggttttgag
     3661 gcagtttttg aaatcaatcg ttgttttaga aatgaaggta tggatttaac ccataatcct
     3721 gaatttacaa ctatagaatt ttattgggcc tatcataatt ataaagattt aatggattta
     3781 accgaagagc tttttgcttt acttttagat aaacttaatt taggaaaaac aatagaattt
     3841 gatggaaaaa tgatagattt ctcgaaacct tttgaaagaa taacttataa agaagcactt
     3901 tgtaaatatg gtggtttaga taggggttta atcgaagata aagagaaaat tcttgctaaa
     3961 ttaaaagcag atggttttga agcaaacgaa aagcttgaac ttggatattt gcaagctgaa
     4021 ctttttgata attatgtaga agaaaaatta atcaatccta cttttgtgat tgattttcct
     4081 atttctataa gtcctttatc aaggcgtagt gatgaggatt ctcagattgc tgagagattt
     4141 gagctgttta tttgtggaag agaattagca aatggcttta atgagcttaa tgatccgctt
     4201 gatcagtatg aaagattttt aaaacaaatt gaagccaaaa atgcaggtga tgaagaagct
     4261 tgcgaaatgg atgaagattt tgtaaatgct ttgggttatg gaatgcctcc aacagcaggg
     4321 caaggtatag gtatagatag acttgtcatg cttttgacaa ataaaaaatc tattcgagat
     4381 gtgatattat ttcctgcaat gcgtccatta aaatcagaac taaaggagaa agaatgagtt
     4441 tagaaatgtt tgataaagaa atttttgatt tgacaaacaa agagctagag cgtcaatgtg
     4501 aaggtcttga aatgatagca agtgaaaatt tcactttgcc tgaagtaatg gaagttatgg
     4561 gaagtatttt gacaaacaaa tatgcagaag gctatccggg taaaagatat tatggaggtt
     4621 gcgaatttgt tgatgaaatc gaaatcttag ctattgaaag atgtaaaaaa ctttttgatt
     4681 gcaaatttgc taatgttcag cctaattcag gttctcaagc caatcaaggt gtttatgcag
     4741 ctttgattaa tccaggtgat aaaattttag gaatggattt aagtcatggt ggacatttaa
     4801 ctcatggtgc aaaagtaagt tcttcgggca aaatgtatga aagctgtttt tacggcgtag
     4861 aacttgatgg aagaattgat tatgaaaaag taagagaaat tgctaaaaaa gaaaaaccaa
     4921 aacttatagt ttgtggagct agtgcttatg caagagtgat tgattttgct aaatttagag
     4981 aaattgctga tgaaataggt gcctatcttt ttgctgatat agcacatatt gcaggtcttg
     5041 ttgtggcagg tgagcatcca agtccttttc catacgctca tgtagtaagc tcaactacac
     5101 ataaaacttt gcgtggccca agaggtggta ttattatgac aaatgatgaa gagcttgcta
     5161 aaaaaattaa ttctgccatt tttccaggta ttcaaggtgg tcctttgatg catgtaattg
     5221 ctgcaaaagc agtaggattt aaatttaatc ttagcgatga gtggaaagtt tatgcaaaac
     5281 aagtaagaac taatgctcaa gttttagcta atgttttaat ggatagaaaa tttaaacttg
     5341 ttagcgatgg aacggataat caccttgttt taatgagttt tttagattgt gaatttagtg
     5401 gaaaagatgc agatttagct cttggaaatg caggtattac tgcaaataaa aataccgttc
     5461 caggagagat tagaagtcct tttatcacaa gtggattaag acttggaact ccagccctta
     5521 ctgccagagg ttttaaagaa aaagaaatgg aaattgtgtc aaattatatt gcagatattt
     5581 tagatgatat taataatgaa aaattacaag agaatattaa acaagaatta aaaaaacttg
     5641 caagtaattt tattatttat gaaagggcta tgttttgatt tcaccaatgg atatgtcgct
     5701 aattaaaata attggcgatc attattatat aagacgcgat aaaattgtaa ataaaattac
     5761 acatagaggt cgcttatttt ttgataaatt tgaaagagtt gatgctcctt taaatttaaa
     5821 tgtcatgaga gaacacgctg ctaaaaaaat tgttgtcgct catgatttaa taacaaaaga
     5881 taataaagta gaaaatattg tctttgatta taatggtttt aatgctgaaa gattttatca
     5941 ccgtgcacaa cttattttaa gagaagaagg ttttataaat ttcacagctt ataaaactaa
     6001 aactccagga catttacatc tttatattca taaaggacat acggcgttaa acgaaggtta
     6061 ttctttagcg tctaaacttt caatgatgtt tgcaagtaaa atgccagtag aatggaaggt
     6121 gtttcctagt atggatgtac ctagggaatt taatatttta atattgcctt atgaggttta
     6181 tcaaaaagaa cgaggaagtt cttggtctaa gcatatgtaa gaaaggacaa attatggaaa
     6241 atcaaaaaaa tgaatttgat gatattattt tagaaaaaag taataaaagt gaaaaagtaa
     6301 aaaaaattct tttacgagtt attgctttag ttattttgtt tttagctatc atgatagtta
     6361 tgaagcttat taatggtagt ggtgatgaaa atacgcaaaa tcaaagtgta ttgccaagtg
     6421 aacctatagc aactcaagac aataacaatg atacttcttt tgaaagtatg ccaattacag
     6481 ataatacttc agcagaagat caatttgagg cattaagaaa acaatttcaa gatgaacaaa
     6541 atacaacagc ctctagttca aataacaatg atagtacaaa ttttgctatg cctgatcaag
     6601 aagttccagc agaaccaaca gcagctactt cggaaaatac cgctccgcaa gcaagtgctc
     6661 ccaaacaaga agtaaaacaa actgtaaaac ctaaagaaga agcaaaaaaa caaatagctg
     6721 taaaaaaaga aaaagaaagt gcaaaacaaa cccctaaaaa agaacaaaat gcaaatgatt
     6781 tatttaaaaa tgttgatgct aaacctgtac atccaagtgg tttagcatcg ggtatttatg
     6841 tgcaaatttt ctcagtaagt aatttggatc aaaaatcaaa agaacttgct tctgtaaagc
     6901 aaaaaggtta tgattataaa ctttataaaa ctacagttgg aggtaaagaa attaccaagg
     6961 ttttaatagg accatttgaa aaggcagata ttgcagcaga acttgctaaa atccgtaagg
     7021 atattgcaaa agatgctttt tcttttactt taaaatgaaa tttttagcag ttataggcga
     7081 tcctatttct cactctaaat cgcctagaat gcataataat gctattaaag ccttagggct
     7141 tgatagcatt tatacacgct atcatttaag aaatgctaac tgtttaagag aagatttttt
     7201 taaattagga cttagtggag ctaatattac tttgcctttt aaggaaaaag ctttagatat
     7261 tgctgatgtg aaggatgatt ttgctagaaa tattggctct gcaaatactt tatgcttaaa
     7321 agaagataaa atttacgctt ataatactga tgctttaggt tttttagaag ctattaagga
     7381 ttttgataat ataaaaaaag ctttgatttt gggtgctgga ggtacagctt tggcgcttgc
     7441 ttatgcatta aaacaaaaag gcgtagaagt gtatatagct aatcgtagta aagaaagatt
     7501 taaagatttc ttagcttatc caacttatct ttataaaaac ttgcaagatt ttgactttga
     7561 tttggttgta aattcaactt ctgctggatt aaaagatgaa aatttacctt gtgatagaga
     7621 gcttttagat ggaattttac ctaaagctaa atttgctttt gaggtaattt atggcagaga
     7681 aacacctttt tatagattgt gtaaagagta tcatttaaaa attaaagatg ggcttgatat
     7741 gcttttatgg caaggggttt ttgcttttga gctttttttt gaaatacgag ataaaagaga
     7801 gatgataaaa aatgcaatgc aacaggcatt gattttaaag tagaatgata gttatttttt
     7861 tgtataagaa aatcttattt tttgtgtgag aaagtttaat tttctcacaa gttttatcat
     7921 tcaaatattt ctaccccatc ttgattttta ctttgattat tttgatttgt tgaagatgga
     7981 tttgtaggaa tattttgtgt aggcgtgttt tcaattgtat tattttgatt agaatttgtt
     8041 tgaggtaagc tttcttcaaa ggtagcatcg ccatcaaaac tattaaaacc actatttgta
     8101 ttaggtatag ttttgcctat gtctgttgct tttggtagat tgttataaag tgtatttaat
     8161 gtatttttat aaaaagctaa aaaactttta tcaatttcaa aagcaggttg ctctaaacct
     8221 ttattgagtt gagttggtac agtggagata gtagttttaa acatattaac cccatcatca
     8281 tttttaatag gatagttaag tgcaactaaa gaatctagtt tagtgctact tgaaagattg
     8341 gttgaatttt gtggattgtg tgcatctata aaatctattt tacctttaaa atttatacct
     8401 aaattggatt ttacataatc tccactcata aaattgcttg ttttttgtgc atttttttct
     8461 tccgtataaa tactgattga acttttaaga gtgtagtctg gattagtagt aactatttta
     8521 tagcctttta gttgagcgat ggttttgatc tgctcttcta aattttgttt taaaagatca
     8581 atttcttttt ctatgcgaat tttaagcact gaattttcaa aataatcaga ataattgtta
     8641 ttttgttcta tattaatagg ctcaagagta atgcttactc cagaattaat aggttcaacc
     8701 tttgttggaa cttggggttt aaaatttggc atagaaacat tgacaaaatt actacttgta
     8761 cccccacaag ctgctaaaat taacatacta ctagcaagta aaatatattt tttcattttt
     8821 tacctttatt taatgtgttt gtgttaatta tagcaagtta aagttttttt gttatatttt
     8881 tataaaagaa aattaggaaa gatatatgga attttggcag catatttatt caaattttaa
     8941 tgttatagct tttagcatct ttggtttaaa ggtgcattgg tatggcatta tgtatgttat
     9001 agctttgctt ttggctttgc ttttggctaa attttttgta agaaaatttc aactagacat
     9061 taatgaaaaa catttggata gttattttat atgggttgaa ataggggtta ttttaggtgc
     9121 aagacttgga tatattttga tttatgatgc aaatactatg tattatatta ctcatccttg
     9181 gcaaattttt aatccttata ttaatggtga atttgtaggt attcgaggta tgagttatca
     9241 tggagcaatt ataggatttt tgatagctac tttattgttt tgtaaaaaat ataaaacaaa
     9301 tccttggatt tttcttgatt tggttgcttt aagtgttcca ttggcttatg tttttggtcg
     9361 tataggaaat tttttaaatc aagagctttt tggtcgcatt acaaatgtgc cttggggaat
     9421 ttatgttgat ggagtattgc gccatccatc gcaactttat gaagcatttt tagaaggtat
     9481 tgttgttttt attatagttt atttagcaag atttaagcaa agctttcaag gggaattgat
     9541 tcttgtgtat gctggtgctt attcattggc aagatttata tgtgaatttt atcgcgagcc
     9601 tgattttggt ataggttttg ttttatgggg tatgagtatg gggcaaattt taagttttat
     9661 aatgtttata acagctttgt tagtttatat ttgtataaag tttaaaaaag taaatattta
     9721 atctatctta aagacttttg taatataatg aaatggattt tttttaattt ctttttacaa
     9781 aggagtaaag atgcgtgagc ttatcgaagg ttatttgggt aagagcattg agggcaaaaa
     9841 aagtaaaatg cctgcgaaat tagactttat ccaaagtgct tcagggcttt ttttaggtct
     9901 ttttatgtgg gtgcatatgc tttttgtttc tacaatttta gtcagtgagg atttttttaa
     9961 ttctgtagtg cattttttag aattaaaatt tgtttacgat aatcctgtta tgagttatct
    10021 tacttcattt ttagccgcct gtgttttagt ggtttttttc gttcatgctt tacttgcaat
    10081 gagaaaattt cctattaatt accgtcagta tcaaatacta agaacacaca gtaaaaaaat
    10141 gaatcacagc gatacttcgt tatggtgggt tcaagctttt acaggtttta ttatgttttt
    10201 cttaggttct gctcatctta tttttattgt aaccaatgca gataaaatca gcggcgatat
    10261 gtcaggagat agggttgtaa gtcattttat gtggcttttt tatgctgttc ttttagtctg
    10321 tgttgaactt catggaagta tagggcttta tagactttgt gttaaatggg gttggtttga
    10381 aagaaaaaat gtaaaagaaa gtcgcaaaaa gcttaaaact gctaaatgga taatcagtat
    10441 tttcttccta gttttaggtg tgttaagtct tgcagcattt ataaaaatag gttatgaaaa
    10501 ctaccaaaat caaacccaaa ctactgcgat gataaaaaac tacaatggag caaattatga
    10561 atatacaata tagtgatgct ttagtaatag gcggaggatt agcaggtctt agagcggcta
    10621 ttgaagtagc aaagagtggc caaagtgtaa cacttttaag tatttgtcca gtgaagcgtt
    10681 ctcactctgc agcggtgcaa ggaggtatgc aggcaagttt agcaaatggg gcaaaaggtg
    10741 agggtgataa tgaagatctt cacttcgcag atacagtaaa aggaagtgat tggggctgtg
    10801 atcaagaagt agcaagaatg tttgctcaaa ctgcgccaaa agcagtgcgt gagcttgcgg
    10861 cttggggtgt gccttggact agagttgcta aaggtccaag aactgttgta atcaatgcac
    10921 aaaaaactgt gattgaagaa aaagaagaag cgcacgggct tattaatgct agagattttg
    10981 gtggaactaa aaaatggaga acttgctata tcgcagatgc aacagggcat tgtatgcttt
    11041 atggtgtagc aaatgaagct attaaacatc aagtaaaaat tattgataga atggaagcag
    11101 taagaattat ccatgatggt aaaaaatgct taggtgtgat tgctagagat ttaaccaatg
    11161 gacaactcat tgcttatatt gcaagaggaa ctatgatagc aacagggggc tatggtagaa
    11221 tttataaaca aactacaaat gcggtaattt gtgaaggaac aggtgctgct atcgctcttg
    11281 aaacgggact ttgtagactt tcaaatatgg aagcagtgca atttcaccca actcctattg
    11341 taccaagcgg tattttgctt actgagggct gtcgtggtga tggtggaatt ttacgtgacg
    11401 tggatggata tcgttttatg cctgattatg aaccagagaa aaaagaactt gcaagccgtg
    11461 atgtggtaag tcgtagaatg atggagcata ttcgcaaagg taaaggtgta aaaagtcctt
    11521 atggggatca tttatggctt gatatttcta tattgggtcg tgctcatgtg gaaaaaaatc
    11581 tccgcgatgt acaagatatt tgcaaaactt tcaatggtat tgatccagca gatgaaggtc
    11641 caaaaggttg ggcgccagtt cttccaatgc agcattattc tatgggtgga attagaacta
    11701 aaccaacagg tgaaagtcaa tggttaaacg gactttttgc ttgtggagaa gcagcttgct
    11761 gggatatgca cggatttaat cgtttaggtg gaaattcatg tgctgaaact gttgtagcag
    11821 gtatgatagt gggagattat tttgcagatt attgtaaaaa taatggtgaa gtaattgaca
    11881 caaatgtagt aaaagacttc ttaactaaag agtatcaata tttaaaatct ttagtagata
    11941 aagaaggtaa atataatgtt tttgaaatta aaaatagaat gaaagaaatt atgtgggata
    12001 aggtggccat ctttagaaca ggtgaaggtt tgaaagaagc agtagatgaa cttgaaaaac
    12061 tttataaaga ttctcaagat gttaaagtac attgtaaaga acttgattgt gcaaatccag
    12121 agcttgaaga agcgtataga gtaccaagaa tgttaaaaat agcactttgt gtagcttatg
    12181 gagcgctttt aagaacagaa agtcgtggag cgcattatag ggaagattat ccaaaaagag
    12241 atgatttaaa ttggatgaaa agaaccaata ctttttgggt agaaggcgaa accttaccac
    12301 gcatagaata cgaagagctt gatattatga aaatggaaat tccaccagca ttccgtggat
    12361 acggagccaa aggaaatatt atagaaaatc ctttaagtga aaaacgccaa gctgaagtgg
    12421 atgcaatacg tgaaaaaatg gaagctgaag gcaaaggtcg ttatgaaatt caaaacgctt
    12481 taatgcctta tgaattacaa gctaaatata aagcaccaaa ccaaagaata ggagttgatt
    12541 atgagtagaa aattgacaat aaaggcattt aaatataatc ctttaagcaa aatttctaaa
    12601 ccacattttg tgacttacga gcttgaagaa actcctttta tgacggtttt tgtatgtttg
    12661 actttgattc gtgaaaaaat ggatgcggat ctgagttttg actttgtttg tcgtgcaggg
    12721 atttgtggat cttgtgcgat gatgattaat ggagtgccaa aacttgcttg taaaactttg
    12781 actaaagatt atcctgatgg agtgatagag cttatgccta tgcctgcatt tagacatatt
    12841 aaagatttaa gcgtgaatac aggagagtgg tttgaagaca tgtgtaaacg cgttgaaagc
    12901 tgggtgcata acgaaaaaga aactgatatt tctaaacttg aagaacgtat tgagccggag
    12961 gttgcggatg aaacttttga acttgatcgt tgtatagagt gtggaatttg tgtagcttct
    13021 tgtgcaacta aacttatgcg tccaaatttc atagctgcta caggactttt aagaacagct
    13081 agatatttac aagatccgca tgaccataga agtgtggaag atttttatga attagtgggc
    13141 gatgatgatg gtgtttttgg ttgtatgtca ttgcttgctt gcgaagataa ttgtcctaaa
    13201 gaattacctt tacaaagtaa aatcgcttac atgagaagac aacttgtcgc tcaaagaaat
    13261 aaataaatct ttcccctttt taaggggaag attatgaaag aattattcca aaaaatttgg
    13321 caaaatgaac ttcaattttt aaattttgat gctaaatttc aagataaaaa caaacttaat
    13381 acggccgagt gcgcgattat tttaagtgtc aataaagaca attatgaaag atattttctc
    13441 ttaaaagaat ttcaagagct ttgcaaaaaa attgatttaa gagtggatat ttttagtata
    13501 caaaatgctc aaatttgtat tttaaatctt ttgaaatcag gttttgttcc aaagcaagat
    13561 ttacttaagg ctctaaaaat tttagaaaaa atttcgaaaa ataccgaaat gtttgatttt
    13621 atttctcaag aaaaagttca aagtatagat caaaaagctt tatttcaaaa tgattttaaa
    13681 gaattaaaca ccattaattt ggagcttcaa aagctaagtt ttgatgaaaa tttaaaatca
    13741 agacttcaaa aaactttgga aaaatttcaa aatttagagt ttaatatagc catcactggc
    13801 gtgatgaatg caggaaaatc aagcctttta aatgctcttt taaaagaaga ttttttaggg
    13861 gtttcaaaca tacctgaaac agctaattta acagtattaa gctatggtaa gagtgaagaa
    13921 gcaaagatat atttttggga taaaaaagaa tggcaaaata tacttgaaag ttcgcacttt
    13981 aatgcagatt taaaagaatt tattgataag ctggataaga gtgtaaatat agaggatttt
    14041 atcaaggata aacctttaat acaaaatatc gcactttgtg aacttaaaaa tttcagttca
    14101 gctaaaaata aaatttcagc tttaattaaa aaaatagaaa ttaaaagtca tttagatttt
    14161 ttaaaaaata atatttccat agttgatacc ccagggcttg atgatgttgt agttcaaaga
    14221 gaaattgtta caaatgagta tcttagagaa agtgattttt taattcattt aatgaatgct
    14281 tctcaaagct taactcaaaa agatgcagac tttttggtgc attgtctttt aaattcaagg
    14341 ctgagtaagt ttttaattgt tttaactaaa gcggatttgt taagcaaaaa ggatttagaa
    14401 gaagtcattg tttataccaa agaaagctta aaatcaagac ttgtggattt agatgaaaat
    14461 ttggtgaaaa agattgattt tttatgtgtg agtgctaaaa tggcaagtga tttttataaa
    14521 ggtttagcac ctaaggaaag tttgcaaaaa agtggtatgc aagaatttga aaactatctt
    14581 tttaacgagc tttatgcagg agaaaaaagc aagattgcct taagagctta caaaaaagaa
    14641 ttacatttgg agcttaaaaa tattctaagc aaatatgaaa tgcaaaatcg tcttattaag
    14701 gagaataaac aaggtgtaag tgaagaaaat caaaagcttt tacttgaact tcaaaagcaa
    14761 aatatcttat taaaagaagc acaagatgaa atttcaaatt ccattgtaaa acttaaaaat
    14821 atagataatg gtatagataa tcttgttcta cttttggcta aaaaattaaa agaacgcttg
    14881 atagatgagt ttaaatattt aaaaaataat gcacaaaagc ttaatctttc tcgtatttta
    14941 aatatagttg atattactac aaaagatggg attaatgata ttttaagaga aattaaattt
    15001 gaaaatatta aaaaaatcga ggagcttaaa acaaatttgt ctttaaaata tgatttttta
    15061 aaagatgatt ttgataatgg ttttgaaggt tttaaagatg gaatttcaaa aaatatagat
    15121 agtatttttc aaagtgaaaa atttgcactt ttaagattga aaattgaaaa attaagcaat
    15181 ttaaaatcag atttatatga gcttgaaacg aatttagata cagttatttt tgatactttt
    15241 aaagaattta aaatgagcga aattttaaat tctttaaata tcaatggagc attttttgag
    15301 tttttaaatg ataaattaaa acattatgaa aaaaatcaaa aatcaaaatt agaaagtctt
    15361 gaaaaagttt tacagagtct gaaaaatcaa gatattaata ttttaaattc ttttgaagaa
    15421 aatttagaaa aaattgaaaa attaaaacaa cttgaaatgg ggcttttaaa tgcagattaa
    15481 tcttttaaat gattttataa aagcctatga aaatacttat agtgtgagtt ttgatgatag
    15541 ttttaaaggg cgtattcaag agctttgcaa ggaacttaat gagcctttta tgcatgcaag
    15601 ttatgcttta gaaaatgaat taaaagagct tgtgttttct ttggataaga atgttaatat
    15661 cgctattata gggcagtttt caagtggtaa atcaagttta ctaaatttga tcttggggtg
    15721 tgattgtttg cctacgggtg ttgttcctgt tacttttaaa cctacttttt tacgctatgc
    15781 aaaagaatat tttttaagag tagaatttga agatagaagt gatattatca caaatataga
    15841 aaaattagcc ttttatacgg atcaaagaaa tgaagtaaaa caagcaaaaa gtttgcatat
    15901 ttttgcacct attcctttac ttgaaaaaat cactcttgta gatactccgg gtttaaatgc
    15961 aaatgaaaat gatactttag caactcttga tgagcttaaa aatattcatg gagcgatttg
    16021 gttaagtttg attgataatg caggtaaaaa aagtgaagaa gatgccataa aagcaaattt
    16081 agaactttta ggagaaaata gcatttgtgt attaaatcaa aaagataaat taaacacaga
    16141 agagctagat aatgttttaa attatgcaaa aagtatattt ttaaaatatt ttgatgagct
    16201 tattgccatt tcttgcaaag aagctaaaga tgagcaaagc tatgaaaaat ctaattttca
    16261 atctttgctt gattttttaa ctcagctaga tacaacagct ttaaaagaaa aatttgttaa
    16321 aagaaaaatt ttaaatttat gcgaaatttt agaagatgaa aaccaacttt ttgtaggtat
    16381 ttttgatcgt ttattaaatc aatttcaaag ttatgaaaag catttacttt tagcgtatga
    16441 aaatttttta aaagagattg aaattttaaa tcatcagatt ttagaacagc ttaaaagcat
    16501 tagcgaaaga atttctagtg aaatttttgc aagtgttaag gaaaaagatg cttattttta
    16561 caaagaaagc aaaggatttt taaagaaaga tttatacaca agatatgatt ataaagcgcc
    16621 ttatatttca agcgacgatg cttttttggc gatgttttat aatagtgatg tgatgagtaa
    16681 agagtttaaa aaaatcaaaa atgaacttta taaatctttt gaagaaatca agatgaaatt
    16741 aaaagatttt ataaacatac ttgaaagaga aattttgctt tttaaagcag aattttcaaa
    16801 catacaaaaa gatcacattt tccaaagtga taaaaatttt agtgaattaa gagctttttg
    16861 caatgcaagt gatgagtact ttttgaaaga ttttaaggag cttttattta aaagtatttt
    16921 agagcttgat ttattttttg aaaaattaaa tcttaaggct tttacaaatt atgaaaatgc
    16981 tacgaaacta agccttgcat tttttagtcg taaaatcaat gaaagtcgtg ttctttatga
    17041 gcttgatagt tctgaatttg tactttttta tcctaaaaaa agtgaaattt atgaaagagt
    17101 tttaaatgaa ttaaatgttt atgagtttga aactttgctt attaataagc ctattttgac
    17161 aaaaattgca aaaaattttt tagaacaaag tcaaaattta atccaagaaa aaaataaatt
    17221 tttagatctt aaaaaagcag agcttcaaaa aagaagagca cagattttaa atgttagaga
    17281 aagtataaag gaagattaat gagaatattt ttaactttat ttttattttt taattcatta
    17341 tttgcattaa gtgaactaga agagggttta aaactttacg aggcaaataa atttgataaa
    17401 gcttatgaaa tttttaaaag tctttgtgaa aaagatattt ctaaagcttg tttttcttta
    17461 gcttttatgc atgaaagtgc taggggtgtg agtaaggatt taaatcaagc ttataaattt
    17521 tatgataaag cttgtaaatt gggtttagcg aatgcgtgtt ctaatatggc tttgcttttg
    17581 caaaatcaag gttatgaaaa tgaagctctt ttggctttta ataaagcttg cactttagga
    17641 gaatcattaa gttgtaataa tatagcttta ttttatgaaa aagaaaaaga tggacaaatg
    17701 gcctcaagtt tttataaaag atcttgtgat ttaaaaaatg caagagcttg ttatcagtta
    17761 ggatctttat atgataaagg agagcttgtt aaagcaagtg taaaatctgc tcttgctttt
    17821 tattctaaat cttgcacttt aggttttggt gaggcttgtt atttgctagg acgctataat
    17881 caactagaaa aacaagatct aacaaaggca aaaagatatt ttggtatggc ttgtgatcaa
    17941 aaacatcaag aagcttgtgc agcttataaa gaacttaatt ctaaagatat agagctttat
    18001 taaaagttct attttcatta ctttcaaaga tatacttaaa taaaattaag aataacacaa
    18061 aatttatcgc tttttaaagt taaatttata ttaataggac taatatagtc ttgcttaaat
    18121 tattatcaag gagaagtaat gcaagacaat attattgatc gcagaagctt ttttaaacta
    18181 gggcttctag gtggttctgt agtagcagct agcactatag gtggcggtgc tgttttaaag
    18241 gcagcagaac ttacgcattc gcatcaagct tcacaaggaa aatcaaataa aattagaggt
    18301 agaatgtttt ttcaaactca aactgaattt gataccttaa gtgcagcctg tgaaagaatt
    18361 tatcctaaag atgagcaagg agaaggagct ataggtttag gcgtgcctta ttttatcgat
    18421 aatcagctag ctagtgctta tggttataat gatagagaat atatgcaagg gcctttcatg
    18481 gagggcaaag ccgaacaagg ctatcaaact cctatgcaac gcaaagatat ttttttagaa
    18541 ggcgtgcatg ctcttgaaga aaatgctcaa aagcgttata aaaaatcttt ttctttgctt
    18601 aaaggtggag atcaggataa aattttaagc gattttgaaa aaggaaaaat tcaaactaca
    18661 ggttttaaat cttcttattt tttcacactt ttaagagata tgacagtagc tggagtttta
    18721 gctgatccaa tttatggcgg aaatgataat aaaaatggtt ggagaatgat gcaatatcca
    18781 ggcgcacaaa tgagctatgt ggataaaatt gcaagtgatg aattttttaa cattgaacct
    18841 atgggtttag cagatatgga gagttaaaat ggctgaagta ttaaaaaaag tagatgtagt
    18901 aacagttgga gcaggatgga ctggaggtat agtggctgca gagcttacta aagcaggttt
    18961 gaatgtactt agtttagaac gcggacatat gcaaagtact gaaaatttta attatatcca
    19021 tgatgagtgg agatacggga ttaattatgg tttgatgcaa gattgctcga aagacactgt
    19081 gacttttcgc catgatccta gcggtttagc cttgccttat cgtaaaatgg gttcgttttt
    19141 attgggtaat aatgttggcg gtgcaggggt gcattggaat ggttggactt ttaggtttat
    19201 gccttatgat tttgaaattc aaaccctaag caaacaaaga tatggtaata aattaggtaa
    19261 tgattatacc ttgcaagatt ggggtgtgac ttataaggat atggagcctt attatgatag
    19321 atttgaaaaa acctgtgggg tatcaggtga gccaaatcct ttagcggaaa aaatgggagc
    19381 ttttagatcc agtccttatc cacaagaacc tcttgaaaat actaaaatgc ttaaacgatt
    19441 tgaaagtgca gcaaaaagtt caaatttaca cacttatcgt ttgccagctt caaattctaa
    19501 aggtggctat acaaaccctg atggtcaaga tttagctcct tgtcaatact gtgcgtattg
    19561 tgagcgtttt ggttgtgagt atggcgcaaa agcaagtcct ttaaacacag taattccaaa
    19621 ggctatgagc acaggtaaat acactatacg cacttatagc aatgtaacac aaattcttaa
    19681 aaaagacgga aaagtaacgg gggtaaaatt tgtcgatact agaacgatga aagagtatat
    19741 tcaacctgct gatatagttg tgcttacaag ttatatgttt aacaatgcta agcttttaat
    19801 ggtaagcaac ataggtgagc aatacgatcc aaaaacaggt aaaggaactt taggtagaaa
    19861 ttattgttat caaatgaaca tgggtacaac agctttcttt gatgagcaat ttaacacctt
    19921 catgggttca ggtgctttag gaactacgag tgatgatttt aacggagata attttgatca
    19981 ttctaaggaa aaattccttc atggagctat gatttatagc gttcagcttg gaactcgccc
    20041 tatacaatca gcccaacttc cagcaggagc tccaacttgg ggtgctgaat ttaaaaaagc
    20101 attaaactat aatttcacaa gagctattac cgtagcagga caaggtgctt ctttgcctca
    20161 taagaataat tatttaagtc ttgatccaac ttataaagat gcttttggta tgccactttt
    20221 acgcttaact tataatttca ccgatcaaga tagagctttg cataaattta ttacagataa
    20281 aacagctgag gtagcaaaaa gaatgcaagg agtaaaatca atcaaaaaag gtgcttatct
    20341 taaggattat agcgttgtgt cttatcaatc tactcataac acaggtggaa caacaatggg
    20401 tgcagataga gaaactagtg tggttaatac ttatttacaa cactgggatg cggataatct
    20461 ttttgttgta ggagcaggaa atttccaaca caatagtgga tataatccaa ctgatactgt
    20521 gggagctttg gcttatcgct gtgctgaagg tattttaaaa tatcataaaa gtggaaaaag
    20581 cttagcttga taataacttg agagtttttg aaaactctca agattataaa tttttaattt
    20641 tcttccgata tagtataata tcaaggaagg caaaaatgat taatggtata aattcttatt
    20701 cgagctacaa ttatacaaaa aggcaaatgg agtctgctct tggtggttgg aatccaagat
    20761 tattttaata aaatatcata aaaaaagggt tttctatggt aaattttgat actcaatata
    20821 caaatatcaa ttatccaaat aataacacaa gcaataaaaa agctgtgctt aaaaatgatg
    20881 atgatgctta ttatgaatcc ataataaaaa aatttggaga tcttgaaaaa tttaaagaag
    20941 aaaatggcta taatggatct cctgatgtaa aagaagtaga aaactcttta tataaaagat
    21001 atatggaaga tagactaagc aaggatgaaa taaaaatact taataaattt ggcacagact
    21061 atcttacaga aggcgtagat ttgtccgcac ttcataaacg aaaagttgat cttttaaaaa
    21121 ctcttacaag tatgaatgaa tttgagaaaa tatggggtgc tgaaagggca caaagagaaa
    21181 aacaattctt taatgaactt ggtaagccac ttactcaaga agatatagat aggttcttaa
    21241 ctaataaaaa caatcaaaaa gaagacaaag aagctttcaa acctatacaa gcagaaagta
    21301 aaaacaaaga aacttacaaa gatgataata caagaaatga tcttgtaaaa aaaactatta
    21361 gaaggtaaat ttagcacaag taaagaatta gaacttcttt ttggtatgaa atttagtgat
    21421 gatgatgcag gagaatttaa taaaattctt tctttaaatt ctgcaccaaa aagtatagat
    21481 ataaaagctt gaaaatgcaa aaatttaaat tataaaaaaa gaaaaaatgt taaatatctt
    21541 aacatacaaa ttcaagtcat cgtttttata aggaaatttt ttatttaaat taagaatttt
    21601 aagatgcgat attgaattta atgtcgttat tttgtgagtt ttgttgataa gttctagcaa
    21661 caaaattttt aaagtcttta tcaaaatttg aatttttatc gttgtttttt gaatctttat
    21721 ctgttttttc taagctattt tctgaatttt tgtcatcttt ttctttattt tcttcttctt
    21781 tttctttggc ttcttcggct ttaagcttca ttgcttcagc tcttgcttca aattccattt
    21841 ttgcagcatt tgctgcaact ttatagtctt gtgggctagg atcagcagga gccatagctg
    21901 ctgctgcgat ttgtcttgca ttggctatag tttcttctgg tgtgtttcct ttttgcatgc
    21961 tgataggaac ttcacccgct gtagcataca tttgattatc agggcctctt gtataagtaa
    22021 aacttgcagc acctgctaag ccgccacccg ctgcttgatg cgcagcttca tgagccttta
    22081 catttctatc gatactttgg agttcgcgaa cttgagctac ttctttttgg cttagctcta
    22141 cgccattaac catttgggtt tgttcgccat ttttttcttt atcatcttta ttttcactaa
    22201 gatttttttc atctttttga gtggaatcag attgatttgt tttatcaaaa gaaggtttgc
    22261 tagagtagta atcataagag ttataacttg aactaatttg catttatcct cctttttgtt
    22321 ttttaaattt ttaggaattt taacgcattt tgacttaaaa atttgataaa ttttgtaaaa
    22381 taatcataaa tacaatttca aaggaatgta atgatttatg aaaatgattt gatttatata
    22441 gagaaagagg aggctcaagt gccttggctt aaaattttta ctaaagaaat ttataaagaa
    22501 tttagcgatt gtcctttaga gttgcaaaag gaactttttg aaaaaatttt actttgtgaa
    22561 aaggctatga tagaatttta caaacctgaa aaaatcaata tcgcctcttt tgcaaattat
    22621 gtgccaaggg tgcattttca tgttatggca agatttaaag aagatgcgtt ttttccagag
    22681 tgtatgtggg gaaaacagca aagagaaaca ataaagcttg atttgcctaa atttgaagaa
    22741 tttgtaaaat ttttaaatag taaaattttt tgatttttat taatgatttg ttatgtttta
    22801 tctaataaaa tttttatatt gaaaattact ataaaaaagg aaaaaaatga aaaaagtttt
    22861 attgagttca ttggttgcgg tgtctttgtt aagcacaggt ttgtttgcta aagaatatac
    22921 tttagataaa gcacatacag atgtaggttt taaaatcaaa catttacaaa ttagcaatgt
    22981 aaaaggaaat ttcaaagatt attctgcggt gattgatttt gatcctgcga gtgctgaatt
    23041 taaaaagctt gatgtaacta taaaaatcgc atctgtaaat acagaaaatc aaacaagaga
    23101 taatcactta caacaagatg attttttcaa agcaaaaaaa tatcctgata tgacttttac
    23161 aatgaaaaaa tatgaaaaaa tcgataatga aaaaggcaaa atgacaggaa ctttaactat
    23221 agctggagtt tctaaagata tcgttttaga tgctgaaatc ggcggtgtag ctaaaggcaa
    23281 agatggaaaa gaaaaaatag gattttcttt aaatggaaaa atcaaacgct ctgattttaa
    23341 atttgcaaca agtacttcaa ctattacttt aagtgatgat attaatttaa atatcgaagt
    23401 tgaagcgaac gaaaaataat tttttagtct aagagtcttg ctcttagact ttgtaaattt
    23461 ttatccaaat tttcttcact ttcttgccaa atcaatttaa aatccggttt aaaattttca
    23521 ttttctaaat taaattccgt gtttttcaag gtggattcta aaaaagcaag atgatttaaa
    23581 gcttgatttt tatcattaaa aattaaaata aaatcatttt ctacgataaa aatttttgct
    23641 ctaaagcgtt ttaaaatttt tgcaatttgt tttaaaatga gtttggtata gctttctttg
    23701 gtatctttta gttcattaaa atgaagcaag gcaatgatat agttgttttt tccttttgta
    23761 aagcgtgtaa ggcttttttc attgggtagc tttgttaagg tgtcaaaaaa agctaaccta
    23821 taagcgtgat ttaaaagata aaaacaaaaa accaaacttg caaattcaaa atatcttatt
    23881 cctgttcctt cttggaataa aaactgaaaa tatgcagcaa aaaatgcgat aagaagataa
    23941 tattctttag ttttaaaagt tttgataaaa atgagtatta agccgactaa aaaaaataaa
    24001 aatcctaatt cactcacagg tttaaaaaaa tttaatgtaa taaaatggaa ttctaaacca
    24061 gcgctattga aagtagtatt tctaggtaaa atgatgctta aaacgcctat agaaataagg
    24121 gttgtaattg aggcgatatt ttttttattt aaaattaaaa catgatgttt tccaaggcaa
    24181 aatagagtaa aaatcatagg taaaaacaaa gccacaaata aattagcttg aaaaaaactt
    24241 gtataaaaat aaggcagctt agctcctagt aatactaaag tcaaaaagaa aatttttgaa
    24301 tttttaaagt aaaaggatag cacaagagct gaaatttcaa aaataaaact caatgatatt
    24361 aaaaaatcta ataaaaacat ttcaaatcct tgattttaat aaaagtgata attgtataga
    24421 aaaaagctta aaagcaggtt ttatttaaat ttagcaattt catcttgtat ggtttgttct
    24481 atatgaagca attcttcatg agtttttttg ctattttcta aaagttcatc aaatttaaag
    24541 ccaagcataa caatacgata taaattgggt ttatattttc tccaattata taaagtacta
    24601 acatcaatgt ctagttcata tgccatatca cgcttgctct tttttgtcat tttttacctt
    24661 aaaaatttag cctttaaaaa attttacatt aaaatt
//
LOCUS       DBBXPZ010000019        24452 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.019, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000019 DBBXPZ010000000
VERSION     DBBXPZ010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24452
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.019"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..224
                     /locus_tag="ACJFD7_000598"
     CDS             <1..224
                     /locus_tag="ACJFD7_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HGG0859438.1"
                     /translation="TLDNLKDGQKAIIVNLSAQKELKNRLLSFGFIKNKNLKKIHSSL
                     KNATIMVELDASCVILRSDEAKTIEVNLI"
     gene            221..2062
                     /gene="feoB"
                     /locus_tag="ACJFD7_000599"
     CDS             221..2062
                     /gene="feoB"
                     /locus_tag="ACJFD7_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0015093 - ferrous iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HGG0859439.1"
                     /translation="MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAK
                     TFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSA
                     ELLSLNKKMLLALNMCDEAKKEGIELDTSILSQEFQSQVVEISAKTKENLELLLQKII
                     ILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIH
                     KFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNALGELVKNNISNTFIASALADGI
                     IAGVGAVILFLPNIIILFLGIALLETTGYMSRIAFLLDGILHKFGLHGKSFIPLITGF
                     GCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGI
                     YILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAG
                     TFILLASLLIWFTSNFPKNEENLNDFNAQERAIEQSYLGQFGKGIEPIFKPLELDWKL
                     SVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIVKNIPIPSAVAFILFVMIY
                     NPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLHIAKILLN"
     gene            complement(2059..3552)
                     /locus_tag="ACJFD7_000600"
     CDS             complement(2059..3552)
                     /locus_tag="ACJFD7_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HGG0859440.1"
                     /translation="MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLS
                     LGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHE
                     TLMAANGTKAEELLEYVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKA
                     KAIFAVGTCSSYGGIQAAYPNPSNTCGISEVLSQKVVNIPGCPPSDINIIATLSFFAL
                     FGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKG
                     PYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEE
                     LKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGASLVENYKKSFEKNYAFIEQ
                     NFDENPMPSKDFWKYLEMSFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAE
                     KPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKAFEDNITKISSLKAS"
     gene            complement(3556..4380)
                     /gene="fabI"
                     /locus_tag="ACJFD7_000601"
     CDS             complement(3556..4380)
                     /gene="fabI"
                     /locus_tag="ACJFD7_000601"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004318 - enoyl-[acyl-carrier-protein]
                     reductase (NADH) activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HGG0859441.1"
                     /translation="MIMKGRKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALK
                     KRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENS
                     FLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVA
                     KAALESSVRYLARDLGIKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNV
                     SIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG"
     gene            complement(4384..5055)
                     /locus_tag="ACJFD7_000602"
     CDS             complement(4384..5055)
                     /locus_tag="ACJFD7_000602"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HGG0859442.1"
                     /translation="MIFAANLKCNHTRASFKIYAEILNKTIGVKCDDIIVFPPSVAFL
                     EKENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKF
                     DFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYERLIIAYEPIYSIGTGV
                     SAQNTDIAKVLEFLASLTKAPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFI
                     KLIKG"
     gene            complement(5052..6254)
                     /gene="pgk"
                     /locus_tag="ACJFD7_000603"
     CDS             complement(5052..6254)
                     /gene="pgk"
                     /locus_tag="ACJFD7_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HGG0859443.1"
                     /translation="MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIP
                     TIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKT
                     KAMNLKVGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAI
                     TKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDK
                     LIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPAC
                     SQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKG
                     SIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVK
                     ALRSKENE"
     gene            complement(6257..7255)
                     /gene="gap"
                     /locus_tag="ACJFD7_000604"
     CDS             complement(6257..7255)
                     /gene="gap"
                     /locus_tag="ACJFD7_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HGG0859444.1"
                     /translation="MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYL
                     FKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLT
                     MAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCR
                     ILQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVM
                     PELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDD
                     ERVSSDFITCSYGAIVASDLTQVIMDDFIKVIAWYDNEWGYSSRLVDMAVYIANKA"
     gene            7315..7860
                     /gene="nadD"
                     /locus_tag="ACJFD7_000605"
     CDS             7315..7860
                     /gene="nadD"
                     /locus_tag="ACJFD7_000605"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000309 - nicotinamide-nucleotide
                     adenylyltransferase activity [Evidence IEA];
                     GO_function: GO:0004515 - nicotinate-nucleotide
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HGG0859445.1"
                     /translation="MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFK
                     QSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYNPSKFYLL
                     IGADHLEKLHLWHDFEKLNSLVEFVIANRNDIGIPKNFKDLKTNKKIASSFIRDTLNT
                     NEVCEEIKDEVKKYYEKLQKN"
     gene            7888..8214
                     /gene="rsfS"
                     /locus_tag="ACJFD7_000606"
     CDS             7888..8214
                     /gene="rsfS"
                     /locus_tag="ACJFD7_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HGG0859446.1"
                     /translation="MQERIDLIVKILDEKKAENIKTIDMSKQEYFVKYVIIAATLGER
                     HALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLEN
                     LKKGRV"
     gene            complement(8245..8622)
                     /locus_tag="ACJFD7_000607"
     CDS             complement(8245..8622)
                     /locus_tag="ACJFD7_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 family protein"
                     /protein_id="HGG0859447.1"
                     /translation="MKKILILLTLCAFAFGASECDRKIDRINKEISFSKAHNDTARTL
                     SLELALKQVQNDCAKDPMFYDKKLEAKKLKEQEVEKIEKELDALKEQKDYMSKAEYKA
                     KKEALKEQKEKIKKEIKEYIDNL"
     gene            complement(8669..10039)
                     /gene="pgmL"
                     /locus_tag="ACJFD7_000608"
     CDS             complement(8669..10039)
                     /gene="pgmL"
                     /locus_tag="ACJFD7_000608"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase PgmL"
                     /protein_id="HGG0859448.1"
                     /translation="MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVS
                     VGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSH
                     NPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILSLYVKFMCE
                     QFSFLKDFNYKFGVDCTNGAAGVVIEPLIKALNLKAHVMFAEPDGQFSNHAPDPTEEE
                     NLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKNIPNPRILGE
                     VKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDG
                     IYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGAL
                     KGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVFTLFNDI
                     KARFKN"
     gene            10161..10697
                     /gene="fliL"
                     /locus_tag="ACJFD7_000609"
     CDS             10161..10697
                     /gene="fliL"
                     /locus_tag="ACJFD7_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HGG0859449.1"
                     /translation="MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSS
                     SSDESEVKEAPKEEAKADKPKVSAPAQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVK
                     CTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINE
                     ILTDGFIKNVYFTDFVVS"
     gene            10697..11044
                     /gene="acpS"
                     /locus_tag="ACJFD7_000610"
     CDS             10697..11044
                     /gene="acpS"
                     /locus_tag="ACJFD7_000610"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HGG0859450.1"
                     /translation="MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLA
                     GLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSIS
                     HDNGFAIAIVAIV"
     gene            complement(11045..11464)
                     /locus_tag="ACJFD7_000611"
     CDS             complement(11045..11464)
                     /locus_tag="ACJFD7_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859451.1"
                     /translation="MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLG
                     YLFIVIIGIFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVI
                     KITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK"
     gene            complement(11461..12822)
                     /locus_tag="ACJFD7_000612"
     CDS             complement(11461..12822)
                     /locus_tag="ACJFD7_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HGG0859452.1"
                     /translation="MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYV
                     KMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRE
                     LLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMS
                     SKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDCKRAKAGDVIRQVLS
                     DIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSL
                     TWTLYLLSLYPKEQEKAYEEITQVLQGGVIEISHLRQFKYLTNIFKESLRLYPPVGFF
                     AREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPF
                     GVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSK
                     RKL"
     gene            complement(12819..13940)
                     /locus_tag="ACJFD7_000613"
     CDS             complement(12819..13940)
                     /locus_tag="ACJFD7_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF829 domain-containing protein"
                     /protein_id="HGG0859453.1"
                     /translation="MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIKADLSKIE
                     KNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIK
                     FGKESIYQLITGYYPFFYVLFSLLFSLILAFGSFAFLQNYMHFSLAIIIGCFLGFLLN
                     HFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYE
                     LVLVAHSVGTIVCIEVLECILRQNLDLSLLHKLKILTLGECIPLVSYQKKADEFRKKL
                     EFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKI
                     KRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI"
     gene            complement(14012..15196)
                     /gene="kpsS"
                     /locus_tag="ACJFD7_000614"
     CDS             complement(14012..15196)
                     /gene="kpsS"
                     /locus_tag="ACJFD7_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide modification protein
                     KpsS"
                     /protein_id="HGG0859454.1"
                     /translation="MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAVKMRKNQTKVFKL
                     NFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQNKKIDAILMYNDCRIIHAKAIKVAKE
                     LGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
                     MAFDAFLYWLFAFILALFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIY
                     NLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRG
                     YKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTK
                     VCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFL
                     DK"
     gene            complement(15193..17262)
                     /locus_tag="ACJFD7_000615"
     CDS             complement(15193..17262)
                     /locus_tag="ACJFD7_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HGG0859455.1"
                     /translation="MKYYSISKKLIANVRNFYTISLYKKNSKINKDDLFLGWGRKKSG
                     LKAINLAKKYKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATAPSKLENLL
                     NTYEFKDEEIKQAKKAIELIKKYKISKYNNNLNIPDDYFQKDEKRVLIITQTANDASL
                     EFGLAKDFKTVDMIKDAVKENPKSKIYIKIHPDVLSGKKQSDLDINSLPKECILITEN
                     FNPIALLEFFDKVYTKTSSMGFEALMQECECICYGMPFYAGWGLTKDKLERKRRMQKR
                     SLEEVFYAAYILYAEYFNPYLNQKSNIFDTIKTLAKYKDIEKANSNRLFMLGFTLWKR
                     HFIKSFFKAKDNKIIFLNSLKSLARYKLKENDKFFIWGKRIDYNALKTTLIKKAQDEN
                     LLHFTPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASKLEEFLQNEIFD
                     ENMLNRAKNIIKILLENRFSKYNGLKHEDLKINAKTGQKIILIPAQVEDDASMILGGF
                     GLSTLDLLKEVRSKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSA
                     IKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRTRKLSLEELV
                     AGALIIYPRYINPKTKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRF
                     YEFLAKK"
     gene            complement(17259..17771)
                     /locus_tag="ACJFD7_000616"
     CDS             complement(17259..17771)
                     /locus_tag="ACJFD7_000616"
                     /EC_number="2.7.1.224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine diphosphoramidate kinase"
                     /protein_id="HGG0859456.1"
                     /translation="MINSPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDEL
                     REILGHYAYDRQGRIDMALKRAKFANFLNDQGMMVIVTTISMFNEIYDYNRKQLKNYY
                     EIYIECDMHELIQRDQKGLYTKALNKEIDNVVGVDIEFDKPEADLVINNSCRNNLEEK
                     VELIIKKLAL"
     gene            complement(17761..18522)
                     /locus_tag="ACJFD7_000617"
     CDS             complement(17761..18522)
                     /locus_tag="ACJFD7_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP:phosphoglutamine cytidylyltransferase"
                     /protein_id="HGG0859457.1"
                     /translation="MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSA
                     GINEIAVVGGYLNEVLKNYLNKYNIEHFFINSKYDKTNMVHTFFCAKDFILKCIEEKQ
                     DLIISYADIVYFQDCVQKLINTKEELAIVVDKSWRKLWSKRFANPLEDAETLKMTNGY
                     IIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSF
                     LQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIDK"
     gene            complement(18524..19126)
                     /locus_tag="ACJFD7_000618"
     CDS             complement(18524..19126)
                     /locus_tag="ACJFD7_000618"
                     /EC_number="3.5.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA];
                     GO_process: GO:0045227 - capsule polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-CDP-amidate hydrolase"
                     /protein_id="HGG0859458.1"
                     /translation="MFIGITQRLICNESYHEERECLALDWGKLFNKDLFKNFTPLPLS
                     YEIDFSYYKHLIKAVILSGGNDLSFYSPNVLSKKRDLYEKQVIEICLEEKIPLLGICR
                     GAQMIAHYFNSHISPCENHIGKHEVFFSKEKFISNSFHNFAIEKLGEDLVELCLAKDN
                     TIEAFKHKYENIFGIMWHIERENGLNNIQILREWFSLIKE"
     gene            complement(19117..21456)
                     /locus_tag="ACJFD7_000619"
     CDS             complement(19117..21456)
                     /locus_tag="ACJFD7_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-utilizing enzyme"
                     /protein_id="HGG0859459.1"
                     /translation="MAELNFKTKAQNLKNLQTKLKKAKVLPLVLTSLEELISNEDKVL
                     QDIQTLKANRLIIRSSSLSEDSMKNSNAGAFLSLANIKADSKDELLKALYEVANSMPS
                     KSDEILVQPMLENITLCGVGFSVDKDNFSPYFCLQYDENGSNSSITDGSSKSAKTYCH
                     YRDYLEFKDIRLQKIIELIKELEVLYDCCFLDVEFAFAIQDDQEELFCLQVRPLVMHE
                     KNNLFHSLPKEALYRFYKRFESLKESRSRVLGDKAIFGVMPDWNPAEIIGLRPRRLAF
                     SLYKEIITDNIWAYQRDNYGYRDLRSHPLIHSFLGIPYVDVRLSFNSFIPKKLDENIA
                     QKLVNFYLDKLNKNHELHDKIEFNIVYSCYDFNSSKKLEELLNHGFNENEIKRLEFSL
                     LELTNKIINPRSGFYLKDIQKAYKLKERYDGIINSNFSLIDKIYWLIEECKRYGTLPF
                     AGVARAAFVAMQLLNSLVEIDFITKEEKDDFLNSLNTVSKNLSKQTNHLNFHNKDQFL
                     KDFGHLRAGTYNILSPRYDEDFELYFDVDQKDSKVYLQDKAFVFSKEKTKALNALLRE
                     HGLEINTCEFFDFLKQAIEGRELVKFEFTRLLSKAIVYIEELGKYYGIEKEDLAHLDI
                     KSILNLYSSLYSINPKEQFVEEINRNKKEYELTQAIKLPSLLCNADEIFSFYNHSIIP
                     NFITQKSITAFTAKENDKDLEGKIVLIYAADPGYDYLFTKNIAGLITCYGGANSHMAI
                     RASELGMPAVIGVGEENFEKYLKAKKINIECESEQIFCL"
     gene            complement(21471..22232)
                     /locus_tag="ACJFD7_000620"
     CDS             complement(21471..22232)
                     /locus_tag="ACJFD7_000620"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HGG0859460.1"
                     /translation="MQKLVEQVWDYTKHAKFYSYRPNYAPKTIDMLISLVGKKDIKVA
                     DIGAGTGNLSIMLLERGCRVVSVEPNDAMREIGIERTKDQKIDWVRATGLNSTLQNSE
                     FDWVTFGSSFNVMDRNEALEEAHRLLKSEGYFSCMWNHRDLNDPVQKIAEDTIVEFVP
                     NYTRGTRREDQRPIIESRKDLFDNIVYIEEDFYFHQSIENYINAWKSVKNPYWDLETD
                     EGNELFNKISDKISQRLPKEFSIKYTTRCWSAKKI"
     gene            complement(22285..23058)
                     /locus_tag="ACJFD7_000621"
     CDS             complement(22285..23058)
                     /locus_tag="ACJFD7_000621"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HGG0859461.1"
                     /translation="MKQGDFTEVAKHYHNRPAYSPFLLEKLVACINDKNKNFKDLNIV
                     EVGAGTGKLTKMLGEMFGCQISAVEPNDNMREEGQKFTQNLSNISWHKGSGEKTCMSN
                     NQADWVIMASSFHWTDPKKSLPEFNRILTGGGYFTAIWNPRHIVEGSVFDEIEKEIKH
                     IVPDLARVSSGTQNVKKWEEILVSTGDFTDCFFMECDYKEFWDKERYLGAWHSVNDIQ
                     AQAGEKRWKEILEMIEAKISHMQSIEIPYKIRAWTARKA"
     gene            complement(23133..>24452)
                     /locus_tag="ACJFD7_000622"
     CDS             complement(23133..>24452)
                     /locus_tag="ACJFD7_000622"
                     /inference="COORDINATES: protein motif:HMM:NF022634.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HGG0859462.1"
                     /translation="HNFNYFIQNFDLIEEWLLSDDFKERYKKENHPYPSLLDPKKLND
                     KNEKINYHNIPAELAWEMNLPLPDNYEFVWLSSALSGHAAMTMYLELCEVNICKYIHH
                     NPFIIYSNIFMQLLNNPLKYNVIAYTDYTHVYVSRGDLKRFLNLLNKNKPVLYLVRDP
                     ISRLKTGLNHINLKANRLDRFDLDTPIERVLDRETYYFESPLPTCDHIKTYWIYAESF
                     FRLNFLTQFFKIEKITYLDMVSIKPEYAYHTFSQLNALYHFRQISKNLFYDTVVYDML
                     GAFLSIPLILCVDLENFGVNYADGKIIEILITTRQFFKLHKINNYKKINPVLFKDNLP
                     FENLIFCIPKEQFVYLENNLTLIKCIQSYLEEFISKMKVKFDLKAKCLICENQILAYL
                     KNNQTLMRQWKKIFDQELICIKQHHPNIVASWKYYQEFEKMCKELDG"
BASE COUNT         8331 a         4306 c         3074 g         8741 t
ORIGIN      
        1 tgactttaga taatttaaaa gatggacaaa aggctattat tgtcaattta agcgctcaaa
       61 aagaactcaa aaatagactt ttaagctttg gatttatcaa aaataaaaac ttgaaaaaaa
      121 ttcactcctc tttaaaaaat gccaccataa tggtagagct tgatgcaagt tgtgttatcc
      181 taagatctga tgaagctaaa accatagaag tgaatcttat atgaaaaaaa tcaaaatagc
      241 ccttgtaggt cagcctaatg taggcaaaag tcttcttatt aatgcgcttt gcaaagctaa
      301 tatgaaagta ggaaatttta gcggagttac tatagaaaaa gcaagtgcaa aaacttttta
      361 caaaaactat gaatttgaag tcattgattt accaggaact tattctttag atggatatag
      421 tgaagaagaa aaaatcacac gccatttttt aaatcaaaat gactatgatg ttattgttaa
      481 tgttttagat gctaccaatt tagaacgtaa tcttatcctt agtgcagaac ttttaagcct
      541 taataaaaaa atgcttttag ctttaaatat gtgcgatgaa gccaaaaaag aaggtataga
      601 gcttgacact tctattttaa gccaagaatt tcaaagtcaa gttgttgaaa tttcagcaaa
      661 aacaaaagaa aatttagaac ttttgctgca aaaaattatt attttatttg aaagtaaatt
      721 tattccaaga tctcaatttt atactccgct ttgcgaaaaa agtccggaaa aagaagattt
      781 attatatttt attaatgaac tttcaaaaaa aattatcaca cacaaaaaag aagaaagaaa
      841 tttaaccaaa aaaatcgatg ccttacttat ccataaattc tttggcttac ctatattttt
      901 atttttaatg tggcttttat ttcaactcac ctttagctta gggcaaattc ctatggatta
      961 tatagaatca ggctttaatg ccttaggtga acttgttaaa aacaatattt ctaatacctt
     1021 catcgcttca gctttagctg atgggattat cgcaggtgtt ggtgctgtga tacttttttt
     1081 acctaatata ataatcttat ttttaggcat agctctttta gaaaccacag gctatatgtc
     1141 aagaatagct tttttacttg atgggatttt acataaattt ggtttgcatg gtaaaagttt
     1201 tattccgcta atcactggtt ttggttgttc agtacctgct tttatggcta cacgcactct
     1261 taagaacaaa agagatagac ttttaactct ttttgtgatc aattttatga gttgcggggc
     1321 aagacttcct gtatatgtgc tttttatcgg tgcttttttt ccaagtgaaa aagcaggaaa
     1381 ttatcttttt ggaatttata ttttaggtgc aattttggga ctttgtgctg caaaattttt
     1441 aagaatgaca gcatttcgtg gacttgatga accttttgtt atggaaatgc caaaatatcg
     1501 tatgccaaat tggcatttag tttggtttat ggtttataat aaagccaaaa tgtatcttaa
     1561 aaaagcagga actttcatac ttttagcctc tttgctcata tggtttacta gcaattttcc
     1621 aaaaaatgaa gaaaatttaa atgattttaa cgctcaagaa agagctatag aacaaagtta
     1681 tttaggacaa tttggcaaag gcatagaacc tatttttaaa ccccttgagt tagattggaa
     1741 attaagcgta tctttaatca gtggtttggc cgctaaagaa gtgatgattt caactatggg
     1801 agtactttat tcactaggaa aagatgtaga tgaaacaaat aatgatttaa aaggaattat
     1861 tgtcaaaaat atacctatac caagtgcagt ggcttttatt ttatttgtaa tgatttataa
     1921 tccctgcttt gcagcaacta tagttttttc aaaagaaagt ggaaagctaa aatacactct
     1981 ctttctcttt ctttttacct gcacaagtgc ttatatagta gcttttatag ggcttcatat
     2041 tgctaaaatt ttattaaatt aacttgcttt taatgatgaa attttagtaa tattatcttc
     2101 aaaagctttt aaaatactat aagcaatacc ttcaaaatca agcccaccgc aaagatagat
     2161 taaagtcata cgaaaagatt tactcacatc aagctttggt ttttcagcat tcatatttaa
     2221 cttaaaatca taaggacttg catgtttaaa agcataattt tttgccgcaa ttaaaaaatc
     2281 attcttatct tttaaaaatg cgcctttaac caaaataaaa ctcatctcaa gatatttcca
     2341 aaaatctttt gaaggcatag gattttcatc aaaattttgt tctataaaag catagttttt
     2401 ctcaaaggat tttttataat tttctacaag cgaagcgcct aatttatttt tagctatatt
     2461 ttgtaaaata agttttatat tgctttcaaa ttcaaaatct atttgttcta aaattttaat
     2521 ttgctcttct agaaaaaatt cttgttttaa ctcttcattg caaagtttag cgtaagaaaa
     2581 aatatttgcc ataggttttt cataattccc aaactcatcc caaaaatttt tctcactaca
     2641 ggctatacaa ccatgtcctg cagccactgg ccaagaagtt ttagcattaa atttcacttt
     2701 aggacagttg ttgtaagtat aaggtccttt acaacctatc ttaaataaac aagctccatt
     2761 ctttgcagct tcatcgtcaa aatgttcagc aaaaatccca ctttcaaatt tcgcctttct
     2821 ttcacacata tcatgcaaac atttaccata agcccacaca ggacgatttt gctcatcaag
     2881 ttcaggcaaa actccaaata aagcaaaaaa acttaaagtc gcaatgatat ttatatcact
     2941 tggaggacaa cctggaatat ttactacttt ctgacttaaa acttcgctaa taccacaagt
     3001 gttactagga tttggataag cagcctgaat accaccataa cttgaacaag tacccactgc
     3061 aaagatagcc ttggctttag cggctagttt ttctaaaatt tcatagccac tctctccttg
     3121 cgctcctata gtaagaaaaa aggtatcaat ggctgcaaca ccaccttcaa ccgctaaaat
     3181 aaaatcttct tctaaaacat actctaaaag ctcttcagcc ttagtgccat ttgccgccat
     3241 taaagtttca tgatattcta aagaaaaaaa atcaaaaata agctcatcaa aacttggcaa
     3301 ctcagaacgc aacaaactct cgctacaccc tgtacattca caaagatgaa gccatactaa
     3361 ctttgtttta ggtgcgattt gaaaaaatct ttgagcaaga gctggaattt cattgcctaa
     3421 agataaatgc ctagcaagaa tttttacact ttcttcattg ataaccttat cctcttttaa
     3481 agtagaattc tcaagttttt taatgcgatc ttcaagtata ttttttaatt cttcattgct
     3541 aagctttgcc attttttatc ctttttgatt atcccaacaa agaacagttt gcccttcttc
     3601 atttttttca acatcgccca tacccatgat gttatatcct gcatcaacat aatgtatttc
     3661 acctgtaaca ccatttgcta aatcgctaag taaatacata gccgaattgc ctacatcttc
     3721 tatactaaca ttgcgtttta aaggagaatt gatttcattg tattttaaaa tcattctaaa
     3781 atcccctatt ccacttgctg ccaaagtttt aataggacct gctgaaatag cattaacacg
     3841 aattcctttt attcctagat ctcttgctaa ataacgcaca gaactttcaa gtgcggcttt
     3901 tgctacaccc ataacattat aatgaggtac atatttaacc ccaccaagat aacttaaagt
     3961 caaaatcgaa cccttatctt ttaaaatagg taaaaccgca cgtgttaaag aaagtaaaga
     4021 atacacagaa gtttgcatag ctatatcaaa agcttctttt gaagtttcta aaaaagaatt
     4081 ttctaaagct tcttttggag caaaagcaac cgcatgtact acaaaatcaa tctcacctaa
     4141 atcttttttg attttttcag cgatagaatc taaatgctcg ttattattta catcaagctc
     4201 ataaacaaaa ttagaattaa actcttgtgc tataggttct acacgttttt ttaaagcatc
     4261 atttaaaaaa gtaaaagcaa gctcggctcc ttgatcaaaa catgcttttg ctatgccata
     4321 agcgatagat ttattatttg caacccctac aataaggcct tttctaccct tcataatcat
     4381 cttttatcct ttgattaatt ttataaaatt ttctactttt aaagctgcag agcctatcaa
     4441 aactccacca caatgattta cacttaaaat ttctttgata ttattttcat tcacacttcc
     4501 accataaagc aaaggtgcct tggttaaact cgctaaaaat tcaagcactt tagcgatatc
     4561 tgtattttgt gcactcactc ccgttcctat agaataaata ggctcataag caataatgag
     4621 tctttcataa tttaaatcaa taatttcaag ttgttttttt aaaaactcta aagtcttgcc
     4681 tgaatttttt gtatctaaat tttcacctat acaaaaaaca attttataac catgctcttt
     4741 agcaaaatca aatttagcct taataaattc ttcatctcct aaagctcttc tttcagaatg
     4801 cccgattaaa acgcatttga tcccaaattc gtccaaatgt tcttttccaa gctcgcctgt
     4861 aaaagcacca ttaacacaag gataaaaatt ttgggctcct tgtatgaagt tattttcttt
     4921 ttctaaaaat gctacactag gtgggaaaac gataatatca tcgcatttta cccctatagt
     4981 tttatttaaa atttcagcat aaattttaaa acttgctctt gtgtgattgc attttaaatt
     5041 tgcagcaaag atcattcatt ttccttagat cttaaagctt ttacacctgg aagttcttta
     5101 ccctctataa gttcaagaga agcgccacct ccagtagaaa taaaagtcat ctcatctgca
     5161 tcacctgcgc gcgcaaccac atcagctgta tcaccgcctc caacaacaga agttgcatgc
     5221 ccttcactaa tataatgact cattttaatg ctaccttttg aaaatttatc aatttcaaaa
     5281 acccccatag gtccattcca ccaaatcgtt tgcgcatcag aaatcacctc tttaaaaagt
     5341 ctcacacttg caggtcctat atctaaaccc atccaaccat ttggaatttc ttgcgctgga
     5401 acaaatttca tcggcgcatc ttgtgagcac gcaggagcgg ctacaacgtc tactggaaga
     5461 taaattttca ctcctaaatt tttaccttta gtaagaattt tattagcttc ttctaaaagt
     5521 tcttcttcta aaagtgaatt tcctatatca taacctaagg cttttaaaaa agtaaatgcc
     5581 atacctccgc ctatgattaa tttatctacc tttggtaata aatttgtcaa tgcttgaagt
     5641 tttccactta cctttgaacc tccaacaaca gcgacaaaag gacgtgctgg atgtttgata
     5701 agattgcttg caaaatcaat ttctttttgg agtaaaaatc ctgcaccttt gtgtttttca
     5761 tcaaaaaatt tagtaatagc ctccacgcta gaatgtgctc tatggcatac tccaaaagca
     5821 tcattgatat aaacttgaac catagaagca agttctttgg ctaaattttc atcattttta
     5881 gtttcgcctt tttcaaaacg caaattttca agaagtaaaa tttcacccac ttttaaattc
     5941 atagctttgg tttttgcatc ttcgccgata acatcttttg ccataacaat ttctttatct
     6001 aaaagtctag caagacgctt agcaacaggt tctaaagaat acttggagct aatttctttt
     6061 ggacgcccta aatgagaggc taaaatcaca ctacaaccat tatccaaaca atatcttatc
     6121 gtaggaatag ctgatcttat gcgtctatca tcagtgatat ttaaaaaatc atcttgagga
     6181 acattaaaat cacatcttat aaaaactttt ttcttagcta aatcaatatc ttttatagaa
     6241 ataatatcac tcatgattaa gccttatttg caatatatac tgccatatct actaaacgac
     6301 ttgaatagcc ccattcatta tcataccaag caattacctt gataaaatca tccataatca
     6361 cttgagttaa atcacttgct acaatggctc cataagaaca agtgataaaa tcgcttgaaa
     6421 ctctttcatc atcatccacc attaaaatgc cttttaaatt tgtagctgca gcttttctaa
     6481 aagcttcatt gatttcatct ttgctgactt tacggcttag ctgcgcagtt aaatccacgc
     6541 ttgatacatc aatcactggc acacgcatac tttgtccgtg aagcttgcca ttaagttcag
     6601 gcataacaag tttcatagct tttgctgcgc ctgtagaagt tggaatgata ttttgcgctg
     6661 cggcacgaga acggcgttta tctttggcct tagcatcaat aatactttgt ccatttgtat
     6721 aagcatgtat tgttgtcata agtccttttt ctataccaaa attatcttgt aaaatacgac
     6781 aaacaggacc taaacaattt gttgtacaac ttgcattaga aataatgctt tcacccttgt
     6841 aaagttctga atttactcct aaaacataag taggtgtatc atcttttgca ggagcactca
     6901 tgatcacttt ttgcactccc atatctataa attcttgaca ttttgccata gttaaatgcg
     6961 ctcctgtgca ctctaaaaca atttgtgcgc cgtgttttgc aaagtcaaga tcttttacat
     7021 tgcgactttt aaatactttg atttttttac catttaccac taaatcatcg ccttcactat
     7081 caacactgcc tttaaattca ccatgtactg tatcgtattt aaaaaggtat tttgtaagtt
     7141 caatatccgt agtatcattt atcgccacaa gctcaatatc atttctttct aagatgattc
     7201 ttgcaacaca tctgcctatg cgtccaaaac catttatagc aacttttaca gccatttaat
     7261 ttccttttgc aaaatataat gttaatattc tacaaaaaaa aggttaaaat tttaatgaag
     7321 atagcacttt ttggtggcag ttttgatcca ccacataatg gacacaatag cgttgtttta
     7381 gaggctttgg aaaaattaga tattgataaa cttattatta tgcctactta tatcaatcct
     7441 tttaaacaaa gttttagtgc tgatgaaaag caaagattct tatgggttaa aaaactttgg
     7501 ggacatttgc caaaagttga aatttgcgat tttgaaatca ggcaaaaacg ccctgttcct
     7561 agcatagaaa gtgttaagta tctttataag ctttataatc ctagtaaatt ttatctttta
     7621 attggcgcag atcatttaga aaaacttcat ctttggcatg attttgaaaa actcaattct
     7681 ttagtagaat ttgttattgc caatcgcaat gatataggaa ttcctaagaa ttttaaagat
     7741 ttaaaaacca ataaaaaaat cgcttcttct ttcatacgcg acactttaaa tacaaatgag
     7801 gtttgtgaag aaattaaaga tgaagtaaaa aaatattatg aaaaattaca aaaaaattga
     7861 tacaatttca aaaattaaag gacaataatg caagaaagaa tagatttaat cgttaaaatt
     7921 ttagatgaaa aaaaagccga aaatatcaaa accattgaca tgagcaagca agaatacttt
     7981 gtaaaatatg tcattattgc agccacttta ggagaaagac acgctctatc cttgatcgat
     8041 gagcttaaaa cacaacttaa agccaaaggt gaggaatttt taaacataga tagtagtgaa
     8101 gaatggagcg tgattgatct tggtgatatt ttaatccatc ttttaacacc agaacacaga
     8161 ggaatttata atatagaaga attattagaa aatcttaaaa aaggtagggt ttaaaaaagc
     8221 taaatttaat tagcctttta atttttagag attatcaata tattctttaa tttctttttt
     8281 aattttctct ttttgttctt ttaaagcttc ttttttagct ttatactcag ccttactcat
     8341 ataatctttt tgttctttca aggcatcaag ttctttttcg attttttcca cttcttgttc
     8401 tttaagtttt ttagcttcta actttttatc ataaaacata ggatctttag cacaatcatt
     8461 ttgtacttgt tttaaagcaa gctctaagct taaagttcta gctgtatcat tatgcgcttt
     8521 agaaaaactg atttctttat tgatacgatc gatttttcta tcacattcac ttgcaccaaa
     8581 agcaaaagca catagtgtaa gtagaataag tatttttttc atttttaatt cctttttaaa
     8641 ataaattaaa tcgcggaata ttatctcatc aattcttaaa tctagctttt atatcattaa
     8701 acaaagtaaa taccatactt tcaagctctt ttgctctttc taaagatgtt gcctcaaagc
     8761 gtgtgataag ataagggctg gtattagatg cacgaagtaa agcccatcca tcgccaaaat
     8821 ctatcctagc tccatcaatt tcacaaagac ttttaacacc ttttaaagct cctttttcaa
     8881 tctctttttg aaattcttcc acaagtttga atttttcttc ttcatttaca ggaattttaa
     8941 tttcaggtgt agtataaagt tttggtaaag ctttaatcat actttctaga tcaaaacctt
     9001 tataaacaag ctccaaggct cttaaaaatg cataaattcc atcatcataa ccaaaatatc
     9061 tatgtttaaa gaaaatatgc ccactcactt cagcagctaa atcaatatct ttttctttca
     9121 tcattttttt gatattagaa tgtcctgttt ttcccataaa aatagttcca aatttagcca
     9181 cttcatcaaa aagattttta gaacatttta cctcgcctaa aatgcgtgga ttagggatat
     9241 ttttagcaaa caaataacaa agctcatccc cacaaaatac atgagtttta cttaaagcaa
     9301 ccattctatc agcatcccca tcaaaagcaa aagccaaaga ataatcttga ttttgattta
     9361 aaaattctct aatcgcactt aaattttctt cttctgtagg atctggggca tggtttgaaa
     9421 actgtccatc aggctctgca aacattacat gagcttttaa atttaaagct ttgattaaag
     9481 gctctatcac cactccagcc gcaccatttg tgcaatcaac accaaattta taattaaaat
     9541 cctttaaaaa actaaattgc tcgcacataa atttcacata aaggcttaaa atatcgtatt
     9601 tttctacttc taaattttct tcaatatcat catctaaatg cttataaact tcttttgaaa
     9661 actcttttaa ttccacacca aaaaaacttt ctttattgat agtgatttta aaaccattat
     9721 aatcttttgg gttatgagag cctgttatca taacatttgc atcaaatttc aagccctcat
     9781 aaagactaaa ataccccaat ggagttggca caagtcctat atcatagatt tttattcccg
     9841 ctttgttaag tccactcact agataattaa aaagttcatt tgcactatat cttgcatcat
     9901 aacccacact tacattttta cagcctttat ttagcatggt ttgtcctaag caaaaaccta
     9961 tagccttaac acttttttca ttcagttctt tgccgtaaag tcctcttata tcatattctc
    10021 taaaaatcac atctaacatt attttccttc aaattcatct cttctttaac ctaaatttat
    10081 cgtttttcta aagcaaattt ggatagaaaa gaaatttttg ctacaatttt acattaattt
    10141 cactaaatga aggaaaattt atggatgaag aattagaaaa cgaagaaacg aaaaagaaaa
    10201 aaggtggttc acttgtaatt attattgtta ttttactttt tgttttactt cttagtatta
    10261 tgggagtaat tgcttggctt atttcaagca gttcaagtga tgaaagtgaa gtcaaagaag
    10321 ctccaaaaga agaggcaaaa gccgataaac ctaaagtttc agctcctgct cagcgaggta
    10381 gtgattttgc taatataggt cctatgtatc cacttgatcc ttttacccta aatttactta
    10441 gcgatagcgg ctcaagatat gtaaaatgca ctatagaact agaacaaaat agcgaacttt
    10501 taaaacctga acttgataaa aaagtcccag tcattcgtga tattattatt cgtacattaa
    10561 cagctaaaac ttttgaagaa gtaagtacac aaaaaggcaa agaacgttta aaagatgagc
    10621 tagttggaaa aatcaatgaa attttaaccg atggctttat taaaaatgtt tattttacgg
    10681 attttgtagt ttcttaatgc gtgtaggctg tgatatcatc gccatttcta gaatagaaaa
    10741 aattcattct agacatggca aaaatttttt ggataaattt ctaagcccaa aagaacaaat
    10801 actcattaaa aatccagcaa ctctagcagg tctttgggct gctaaagaag ccgctagcaa
    10861 ggctttgggt gttggaattt gtgaattatg cagttttttt gatattgaaa tatcaaaaga
    10921 tgaaaaaaac gcgcctaaat taaaatattc tcaaaaaatt acaaaagatt ttaatatcac
    10981 tcaaacttcc ctaagtattt ctcatgataa tggttttgct atagccatag tggctatagt
    11041 ttgattattt tcctatagtt tgcttgtcta aatttcttga aagtatgaaa tccaccacag
    11101 gttgttctct tttgtttgct cttttacaat gatctttttg aaaaaaatct gtgattttta
    11161 taacaatcct tgcccatttt ttgcgatttc tttcacgcca cgcatgagaa gaaacgctct
    11221 cccaagcata gccattaaac aagcttgcat ttacaaaatg atctaaggct ctaacaccct
    11281 gtcttgctcg tgcagtatta aaaaaaattc ctataatcac gataaaaaga tatcctaaaa
    11341 ctgctaaagg tactattgca caaagcaaaa tagtccctgc taatttttct tttaagcttc
    11401 cttttaaggt gcgttttaca cgacgacgaa aattggcgcg aattttagtt ctaactcttt
    11461 tcatagcttt cttttgctaa attttatcct cataccatta gccgaacgca ctgttaaacg
    11521 ccctactaca tcaggtacaa aaccttcttc aagttctagt ttgtaagttt ttaaaatatt
    11581 agccaaaatc aaaatcgctt cttgcatagc aaaaccttgt cctatacaaa ttctttcccc
    11641 taccccaaaa ggcaaataag catctttttt gtactctcct tcaaaacgag aaggattaaa
    11701 tccatgcgga tttgtccaaa attcttcatg tctgtgtatc agccaaggag caatcaccac
    11761 cccagaacct tttttaataa gcttatctct aacttgagta tctttttttg cctctcttgc
    11821 aaaaaaccca acaggaggat aaagtcttaa agattcttta aaaatatttg ttaagtattt
    11881 aaactgtctt agatgcgaaa tttcaatgac tccaccctgt aaaacctgag taatctcctc
    11941 gtaagctttt tcttgctcct taggataaag actaagcaaa taaagcgtcc atgtcaaaga
    12001 acttgctgtg gtttcatgtc ctgctaaaaa aagcatagcc acttgatcta aaatttcctc
    12061 aaaagaaaaa cgcttatttg tatcagcatc cactactaaa agcaaagatc ctaaaatatc
    12121 ttcaaattct gcattatctg ccatatcata tcttggtttt atgatatcac ttaaaacctg
    12181 tctgatcaca tctccggcct tagcacgctt acaatctcct aacacataag aaagccattt
    12241 tggaaaacga aacatacgac gcatggctgt atgcacgctt tgctcttgaa aagtcacaaa
    12301 tgcgtttaag atttttttac ctttttcctc atcgagtttt gaagacataa tggtgcgaaa
    12361 aattacatca gcggtaataa aagtcatagc ttcatctact tcgataacag catgatttgg
    12421 atacttgcta aaacgatcca tcatatctgc cacagcttca ctcataagat taaacacttt
    12481 attgatacga gtcatttcaa aacttggacg caaaagctct ctttgttttt tccaaacttc
    12541 accatttgta gtaaaaatac tctcccctaa aagcggactt aaaagctcat gtaaaaatgc
    12601 acttttagga aattctctaa cctcatcaac catcattctt ttaacttctt tagtgtcatt
    12661 tatgacataa agatcaaaat ttggcatctt cacatagcct gtttgcattt tataactacg
    12721 ctcataaagc ccgtcaagcc aagatctacg ctttaacaaa aaagttaaaa gcgtagaagc
    12781 tttattttta taaggttttg gaaaaaaggg gcattcactc atatttttac cttttcttct
    12841 aaaaatttag gcattatgat gaaagaaaaa aaatcataat cacctttaac actaatacta
    12901 taaagatata aaaagtgcgc tttgttttta tctcttttta tttttttata ctcatgtttt
    12961 tcatataaag tgtgaaattt agcacttaaa aatggaggtg taaatttagc atttacgcca
    13021 ctcgtgcgga aaaaatccac ttgaggaaaa catgctccat caataatcga tgtgtaatca
    13081 taccatttta aatcaaacct tgaaacaaat tcaagcttct ttctaaattc atccgctttt
    13141 ttttgataac tcactaaagg aatgcattct cctagagtaa gaatttttaa cttatgaagt
    13201 aaagataaat ctaaattttg tcttaaaata cactccaaaa cttctataca aactatagtt
    13261 ccaacactat gtgctactaa aacaagttca taatcttgtt tattttcatt ttgttttagc
    13321 ttatctacta tggtatttgc aaaaagcttg attctttctt gcatagtgcc tgttttttta
    13381 tcttgccaag tagcacaaaa agcacaaatt cttgctatcc aaaatacagc taatttctta
    13441 cctaatttaa ataaaaaatg atttagtaaa aatcctaaaa aacatcctat gatgatagct
    13501 aaagaaaaat gcatataatt ttgcaaaaaa gcaaaacttc caaaagccaa aatcaaagaa
    13561 aatagtaaag aaaataacac ataaaaaaaa ggataataac ctgtgataag ttgataaatc
    13621 gactctttgc caaatttgat aaaaagccct gtgatagtat aaattctaaa aaaactataa
    13681 caatctgcca aagcatcttt ataattttct gaccaatttt tcttaacaat atcattccat
    13741 gttaaaaaat gatatttagt ttgcactcct tcgcaagaaa tttgaaaaaa aggaaattgt
    13801 tcattttttt caattttact taaatcagct ttaatgttaa aagcatgaga ataatctttt
    13861 aggttttttt taaataaatc ataataaaat ctataacttt taggatcata tcctgctata
    13921 taaaatactt ccctatccat aaaatatttc tttttacttt taattataac aactttgctt
    13981 taaaagctct cttaatcaaa gttttttagt cttatttgtc taaaaagaaa tttttataaa
    14041 aattgccgtt gaattggtta gtttgtaaaa gatatttttt aaaattacac accaaaacag
    14101 gattgggttt ataagcatga gcttcacgcc aaaaaaattg aagttttttt ggataagata
    14161 agccttcaaa atcataaaaa gcattgccac aaaccttagt cggacagcct tctaaaatag
    14221 cactaaggcc tactgttgaa tttatagtaa tacaacctag agcctttctt aaaagaactg
    14281 gcaagtgggt atcatgaaca tataaaaccc ttccttctac atgatatttt tgacttaaat
    14341 catttatgag tttagaataa ttcttatagc ccctatccat gggatggtgt ttaaaaacta
    14401 gataagattt agctcttgca tggtttgcaa aagaaagtat ggtttcctct ataaagtgct
    14461 ctatgctttt tttgtaatga tatttaattt gcgtatcgct ataaacttgt aaaatcgcca
    14521 aaaagtactt tttttctaaa ttataaatct tttcatttag ttttttttct gtaatcttat
    14581 aaagatactt tctatacaat gatctaaacc aaaataaaaa ttcaaaagga tataaagtgc
    14641 gatgatgaag tttgttgtta aaaaatagag ccaaaataaa agcaaacaac caatacaaaa
    14701 aagcatcaaa agccataaat ttaaatccac ctggaatttc ttttatgctt tctttggtaa
    14761 aaatattttg agaaagataa aaatttttat cacgcggtaa agaagaattt gcattcaccc
    14821 catctttttc caaagtaata caataaggcc ttaaatatcc ttcttcaaaa atccatattt
    14881 caattcctaa ttctttagcc actttaatag ccttagcatg tataatgcga caatcattat
    14941 acattaaaat agcatcgatt tttttatttt gaaaaaaatc tctatagaaa ttttcaagat
    15001 ctttttcatc acacttacac ctcgttccgc taggatagaa aaaaaaatct ccgccgttaa
    15061 aattgagttt aaaaactttg gtttggtttt ttctcatttt cactgcaaga tgatgaaaaa
    15121 aatttcccac aggcccttgc aagagtaaaa catttttacc gctaaattct tttttaattt
    15181 tagtgctaaa tctcatttct ttgctaaaaa ttcataaaat cttcttattt ttctaagcat
    15241 aaaagtttta aaatctattg ccaattttat atattttttt gaaaaataag ctttttgtaa
    15301 atttagcatt atatctaaac aaacttcaat ttcacataaa gtttttgttt taggatttat
    15361 atatcttgga tatatgatca aagcacctgc tacaagctct tctaggctta gttttcttgt
    15421 tcttctttcg catctatatt tatcttttgt taaaccccag cccgcataaa aaggcatgcc
    15481 ataagtaaaa acttttttag ctcttaaaag agcatcaaaa ccacttgtag aagtaatagt
    15541 gtgaatttca tcagcaattt ttatagcgct atcaatactg caatctttta caatctcatc
    15601 acaaaattcc aagatgagtg tttcatcttt taaacctaca cggttgccgc ttaacacatc
    15661 aggatggggt ttaaagatga tataagcatc ttgattttta gaacgcacct ccttaagcaa
    15721 atcaagagta gataagccaa aaccccctaa aatcatcgaa gcatcatctt caacttgagc
    15781 agggattaaa ataatctttt gtcctgtttt ggcattgatt tttaagtctt catgctttaa
    15841 gccattatat tttgaaaagc ggttctcaag taagattttt ataatatttt ttgccctatt
    15901 tagcatattt tcatcaaaaa tttcgttttg caaaaactct tctaatttac ttgctttatt
    15961 tggatctatg taaagtcctt tatcatcaac gattaaagaa aaagggcgcg taagatcaga
    16021 acctaaagag atcgagcgaa taaagccatc ttcaactaaa gaaattttgg gagtaaaatg
    16081 gagcaaattc tcatcttgcg ctttttttat aagagtagtt ttaagagcgt tataatctat
    16141 ccttttaccc caaatgaaaa atttatcatt ttctttaagt ttatatctag ctaaagattt
    16201 taaagaattt aaaaaaataa ttttattatc tttggcctta aaaaaagact tgataaaatg
    16261 ccttttccat aaggtaaatc ctaacataaa aagcctgtta gaatttgcct tttctatatc
    16321 tttatatttt gctaaagttt taatagtatc aaaaatatta cttttttgat ttaaataggg
    16381 attaaaatac tcagcataaa gtatataagc agcatagaaa acttcttcta aacttctttt
    16441 ttgcatcctt cttttacgct ctaatttatc ttttgttaga ccccaacctg cataaaaagg
    16501 cataccataa caaatacact cacattcttg catcaaagct tcaaaaccca tactagaagt
    16561 tttggtataa accttatcaa aaaactcaag taaggctatg ggattaaaat tttcagtaat
    16621 taaaatacat tctttaggta aggaatttat atctaaatca ctttgttttt taccgcttaa
    16681 aacatcagga tggattttta tataaatttt agatttagga ttttctttta cggcatcttt
    16741 tatcatatcg acagttttaa aatctttagc aagcccaaat tcaagtgagg catcattggc
    16801 cgtttgagtg atgattaaaa cccttttttc atctttttga aaataatcat ctggaatatt
    16861 aagattgtta ttatacttgc taattttata ttttttgata agctctatag cttttttagc
    16921 ttgcttgatt tcttcatctt taaattcata agtatttaaa agattttcaa gctttgaagg
    16981 tgctgttgca tcataataaa tgcctatatc atctttaacc atagaaaaac ttgggctatt
    17041 ttcaacccct aaatttaatg agcggataaa tccatcttct aaaagtatga atttagcctt
    17101 atatttttta gctaaattta tagcttttaa acctgatttt ttgcgtcccc agccaaggaa
    17161 aagatcatct ttatttattt ttgaattttt cttatacaaa gaaatggtgt aaaaatttct
    17221 aacattagca ataagttttt ttgatattga gtaatacttc acaatgccaa tttctttatt
    17281 ataagttcaa ctttttcttc taaattattt cgacaagaat tattgatcac taaatcagcc
    17341 tctggtttat caaattctat atcaacacca actacattat caatttcttt atttaaagcc
    17401 ttagtataaa gccctttttg atctctttgt attaattcat gcatatcgca ttctatataa
    17461 atttcataat aattttttaa ttgctttcta ttgtaatcat aaatctcatt aaacattgaa
    17521 atcgtagtga caataaccat cataccttga tcgtttaaaa aatttgcaaa tttagctctt
    17581 ttcaaagcca tatctatgcg accttgtcta tcgtatgcat aatgtcccaa tatttctctt
    17641 aactcatctc catcaagata aataagattt ttatatttta gttttaattt ttcatacaaa
    17701 gcttgaccta tagttgtttt tccacttcca gctaaaccag taagccaaat aatataagga
    17761 ctatttatca atttgcacct ctaaatcact cataaaatca atttcacacc aattgccatc
    17821 aatttccact gcttttgcgt tgttgtattt ttcaattaaa gcttgcaaaa aacttgtcat
    17881 gtacatattt tcaaaatttt tattatcata taaaatatct cgatcaagca tttcataaaa
    17941 agcaataact tcggaaagaa attgataaga aaatttaaaa agtcctatat attgagcttc
    18001 tatctcatca taggcattag ctttttttcc aagttctata atataaccat ttgtcatctt
    18061 taatgtttca gcatcttcta aaggatttgc aaagcgtttg ctccaaagct tacgccaaga
    18121 cttatcaact actatagcaa gttcttcttt ggtatttata agcttttgta cgcaatcttg
    18181 aaaataaaca atatccgcat aagaaataat caaatcttgt ttttcttcga tgcattttaa
    18241 tataaaatct ttagcgcaaa aaaaagtatg aaccatattg gttttatcat attttgaatt
    18301 aataaaaaaa tgctcaatat tatatttatt aagataattt tttagcactt cgtttaaata
    18361 tccacccaca acagctattt catttatacc tgctgatttt aaagcttcga tttcataatc
    18421 tatgattttt ttattcttat actcaaccat acactttggt tgatcttttg ttaaaggcat
    18481 cagtcttgat ccaaaacctg ctgctaagat aattgcattc atattattcc ttgattaaac
    18541 taaaccactc tcttaaaatt tgaatattat taagcccatt ttctctttca atatgccaca
    18601 ttataccaaa aatattttca tacttatgtt taaaagcttc tatggtatta tcttttgcta
    18661 agcaaagttc tacaagatct tcgcctaatt tttcaatagc aaaattatga aaagaattgc
    18721 ttataaattt ttcttttgag aaaaatactt catgtttgcc tatatgattt tcacaaggac
    18781 ttatatggct gttaaaataa tgagctatca tctgagcccc tctgcaaatt cctaaaagtg
    18841 gtattttttc ttctaaacaa atttctataa cttgcttttc atataaatct ctctttttgg
    18901 ataaaacatt aggactataa aaacttaaat cattgccacc acttaatatc acagctttta
    18961 ttagatgttt ataataagaa aaatctattt catagctaag aggaagagga gtaaaatttt
    19021 taaataaatc tttattaaat aattttcccc aatccaaagc caaacattct ctttcttcat
    19081 gatagctttc gttgcaaata agcctttgag taatacctat aaacaaaata tttgctcact
    19141 ttcacattct atatttattt ttttagcttt taaatatttt tcaaaatttt cttctccaac
    19201 tcctataaca gcaggcattc caagttctga ggcacgaatg gccatatgcg aattagcacc
    19261 cccataacat gtaataagtc ctgctatatt ttttgtaaat aaataatcat atccgggatc
    19321 tgctgcataa attaaaacaa tctttccttc taaatcttta tcattttcct ttgccgtaaa
    19381 tgcagtaata ctcttttgtg taatgaaatt tggaataatg ctatgattat aaaaagaaaa
    19441 aatttcatcg gcattgcaaa gcaaagaagg aagttttata gcttgtgtaa gttcatattc
    19501 ttttttattg cgattaattt cttctacaaa ctgctctttt ggatttatag aataaagact
    19561 agaataaaga tttaaaatgc tttttatatc aagatgagcc aaatcttctt tttcaatgcc
    19621 ataatatttg cctaattctt ctatataaac tatagcttta gaaagcaatc tagtgaattc
    19681 aaatttaacg agctctctac cctcgatagc ctgttttaaa aaatcaaaaa attcacaagt
    19741 attaatctct aatccatgct ctctaagtaa agcatttaaa gcttttgtct tttcttttga
    19801 aaaaacaaaa gctttatctt gtaaataaac tttactatct ttttgatcca catcaaaata
    19861 aagttcaaaa tcttcatcat atcttggaga taaaatatta taagttcctg ctcttaagtg
    19921 tccaaaatct ttcaaaaatt gatctttgtt gtgaaaatta agatggtttg tttgtttgct
    19981 taaatttttg ctcactgtat tgagtgaatt taaaaaatca tctttttcct ctttggttat
    20041 aaaatcaatc tcaactaaag aatttaaaag ttgcattgct acaaatgcag ccctagccac
    20101 ccccgcaaaa ggcaaggttc cataacgctt gcattcttca ataagccaat aaattttatc
    20161 aattaaagaa aaattagaat taataatgcc atcatatctt tcttttagct tataagcttt
    20221 ttgtatgtct tttaaataaa accctgatct aggattaata atcttatttg taagttccaa
    20281 taatgaaaat tctaatcttt tgatttcatt ttcattaaaa ccatgattta aaagttcttc
    20341 taatttttta gaactattaa agtcataaca agaataaaca atattaaatt caatcttatc
    20401 gtgcaattca tgatttttat taagcttatc taagtaaaaa ttgacaagtt tttgtgcaat
    20461 attttcatct aatttttttg gtataaaaga attaaaagat aatcttacat ctacataagg
    20521 aatgcctaaa aaagaatgga ttaaaggatg ggatcttaga tctctataac cataattatc
    20581 tctttgatac gcccagatat tatccgtaat gatttcttta tataaactaa aagctaaacg
    20641 cctaggtctt aaccctatga tttcagctgg attccaatca ggcattaccc caaaaatagc
    20701 tttatctccc aaaactctag atcttgattc ttttaaagac tcaaaacgtt tataaaatct
    20761 atataaagct tcttttggta aagaatgaaa taaattattt ttttcatgca taaccaaagg
    20821 acgcacttgt aagcaaaaaa gttcttcctg atcatcttga atagcaaatg caaattcaac
    20881 atctaaaaaa caacagtcat ataaaacttc taattctttt ataagttcta taattttttg
    20941 aagtctaata tctttaaatt ctaaataatc tctgtaatga cagtaagttt ttgcactctt
    21001 gctacttcca tctgtaatag agctatttga accattttca tcatattgaa gacaaaaata
    21061 aggggaaaaa ttatccttat caacactaaa accaactcca caaagagtaa tgttttcaag
    21121 cataggttga actaaaattt catcgctttt tgatggcata gaattggcaa cttcatataa
    21181 agcttttaat aactcatctt tagaatcagc tttaatattt gccaaagaaa gaaaagcacc
    21241 tgcattggag tttttcatac tatcttcact taaagaagaa cttcttataa tgagtctatt
    21301 agcctttaag gtttgaatgt cctgtaaaac tttatcttca tttgatatta attcttcaag
    21361 cgaagttaaa accaaaggta gaacttttgc tttttttaat tttgtttgta aattttttaa
    21421 attttgtgct ttggttttaa aatttaactc cgccatgttt ttccttagtt ttatattttt
    21481 ttagcactcc aacaacgagt ggtatatttt atgctaaatt ccttaggaag tctttgtgaa
    21541 attttatcac taattttatt aaaaagttca tttccttcat cagtctccaa atcccaataa
    21601 ggatttttaa cacttttcca tgcattaata taattttcaa tgctttgatg aaaataaaaa
    21661 tcctcttcaa tataaacaat attatcaaaa agatcctttc gactctctat aattggtctt
    21721 tgatcttctc ttcttgttcc tcttgtataa tttggtacaa attctacaat agtatcttca
    21781 gctatttttt gcacaggatc gtttaaatcc ctgtgattcc acatacaaga aaaatatccc
    21841 tctgatttta ataagcgatg cgcttcctct aaggcttcat ttctatccat tacattaaaa
    21901 ctactaccaa aagtcaccca atcaaattca ctattttgga gtgttgagtt taagcctgtt
    21961 gctctaaccc agtcaatctt ttgatccttg gttctttcta tcccgatctc acgcatcgca
    22021 tcatttggtt ctacagatac taccctacat cctctttcta aaagcataat gcttaaattt
    22081 ccagttcctg cgccgatatc agcgacttta atatcttttt ttccaactaa actaataagc
    22141 atatctatag tttttggagc ataatttggt ctatagctat aaaatttagc atgcttggta
    22201 taatcccaca cttgttctac tagtttttgc attttatttc ctttttttca tctttaacaa
    22261 gcttgatgaa aaaaaggagg tattttatgc ttttctagct gtccatgctc ttattttata
    22321 aggaatctct atactttgca tatgagaaat tttagcttct atcatctcta aaatttcctt
    22381 ccatcttttt tcacctgctt gtgcttgtat atcatttaca gaatgccaag ctccaagata
    22441 acgctcttta tcccaaaact ctttatagtc acactccata aaaaagcagt ctgtgaaatc
    22501 tcctgttgaa acaagaattt cttcccattt tttaacattt tgagtgccac tgcttacacg
    22561 agcaagatct ggaacaatat gtttaatctc cttttcaatt tcatcaaaaa ccgaaccctc
    22621 tacaatgtgg cgaggattcc aaatcgcagt aaaatacccc ccccctgtca atatacgatt
    22681 aaattctggg agagattttt taggatctgt ccaatgaaaa gaactagcca tgatgaccca
    22741 atcagcttga ttattgctca tgcaggtttt ttcgccactc cctttatgcc aagaaatatt
    22801 tgataaattt tgtgtaaatt tttgtccttc ttcgcgcata ttatcgtttg gttcaacagc
    22861 actaatttgg catccaaaca tttctcccaa catcttagta agttttccag ttccagctcc
    22921 tacttcaaca atatttaaat ctttaaaatt tttattttta tcattgatac aagctacaag
    22981 tttttcaagt aaaaatggac tataagcagg tctattatga taatgctttg caacctctgt
    23041 aaaatcccct tgtttcatat tatttccttt ctctaaatta aaacataatt atatcttttt
    23101 tttattaatt tacaaaatct ttctcctgaa tatcacccat ccaactcctt gcacattttt
    23161 tcaaattctt gatagtattt ccaagaagct actatatttg gatgatgttg cttaatacaa
    23221 atcaactctt gatcaaaaat ttttttccat tgcctcataa gagtttgatt atttttcaaa
    23281 taagctaata tttgattttc acatattaaa cattttgctt ttaaatcaaa tttaaccttc
    23341 atcttggata taaattcttc taaataagac tgaatacatt ttatcaaagt caaattattt
    23401 tctagataaa caaattgttc cttaggaata caaaaaatta aattttcgaa aggtagatta
    23461 tctttaaata atacaggatt aattttctta taattattta ttttgtgaag cttaaaaaac
    23521 tgtcttgtag taattaaaat ttcaataatt ttaccatcgg cataatttac cccaaaattc
    23581 tccaaatcta cgcataaaat aagtggaatt gataaaaaag ctcctaacat atcatatact
    23641 acggtatcat agaataaatt ttttgatatt tgtctaaaat ggtataaagc atttaattga
    23701 ctaaaagtat gataagcata ttcaggttta atactaacca tgtctaagta agtaattttt
    23761 tctattttaa aaaattgtgt taaaaaattt aatctaaaaa agctttccgc ataaatccaa
    23821 taagttttta tatgatcaca ggttggcaaa ggagattcga aataatatgt ctctctatct
    23881 aaaactcttt ctataggtgt atccaaatca aaacgatcaa gtctattcgc ctttaaatta
    23941 atatgattta aacccgtttt taatctcgaa attggatccc taaccaaata taatacaggt
    24001 ttatttttat ttaaaagatt taaaaatctt ttaagatctc ccctggaaac ataaacatga
    24061 gtgtaatcag tatatgctat gacattatat tttaaagggt tatttagcaa ctgcatgaaa
    24121 atgttagaat atataataaa tggattatga tgaatatatt tgcaaatatt tacttcgcaa
    24181 agttccaaat acattgtcat tgctgcatga cccgataaag cagaagaaag ccacacaaac
    24241 tcatagttat ctggtaaagg caaattcatt tcccaagcaa gttcagctgg tatgttatga
    24301 taattgattt tttcattttt atcatttaat ttcttaggat caagtaatga aggataagga
    24361 tggttttctt ttttgtatct ttctttgaaa tcatctgata ataaccattc ttctataaga
    24421 tcaaaatttt gtataaaata attaaaatta tg
//
LOCUS       DBBXPZ010000020        23393 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.020, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000020 DBBXPZ010000000
VERSION     DBBXPZ010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 23393)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23393)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23393
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.020"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            47..823
                     /gene="surE"
                     /locus_tag="ACJFD7_000623"
     CDS             47..823
                     /gene="surE"
                     /locus_tag="ACJFD7_000623"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008252 - nucleotidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HGG0859463.1"
                     /translation="MKEILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSAC
                     SHSITLTKPLRFVKVGKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDYKNALQITKKIIQNIFDKGFP
                     LEKKEFLNINFPAKSKIKGIKICKAGKRVYNFEAHSNVNPRGVEYYWLAAANLDFEDE
                     KNSDIALLKKGYATITPIMLDLTAYERMKKVKKWLKANDE"
     gene            813..1466
                     /locus_tag="ACJFD7_000624"
     CDS             813..1466
                     /locus_tag="ACJFD7_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011812701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HGG0859464.1"
                     /translation="MMNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYR
                     SGFKNLTLIDADKFEITNQNRQIHSENIGEEKAKVFERIYKAKGIVSKIDEDFLKNFD
                     LSEFDLIIDAIDDIPAKVALAHLIDFKKQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAR"
     gene            complement(1541..1921)
                     /gene="panD"
                     /locus_tag="ACJFD7_000625"
     CDS             complement(1541..1921)
                     /gene="panD"
                     /locus_tag="ACJFD7_000625"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004068 - aspartate 1-decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006523 - alanine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HGG0859465.1"
                     /translation="MNITLLKSKIHRANVTEARLDYVGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKP
                     KVVFVDENNTATKITNYEKHGAIF"
     gene            complement(1918..2766)
                     /gene="panC"
                     /locus_tag="ACJFD7_000626"
     CDS             complement(1918..2766)
                     /gene="panC"
                     /locus_tag="ACJFD7_000626"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HGG0859466.1"
                     /translation="MEVITSIKEAKQIVKNWKSHNLSIGYVPTMGFLHDGHLSLVKNA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDAAQMYLKNF
                     STYVDMNTITDKLCGAKRLGHFRGVCTVLAKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSEEERKASLAISQSIFLAEKLVQEGEKD
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIKNIADNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            complement(2777..3601)
                     /gene="panB"
                     /locus_tag="ACJFD7_000627"
     CDS             complement(2777..3601)
                     /gene="panB"
                     /locus_tag="ACJFD7_000627"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HGG0859467.1"
                     /translation="MRKSILSFLEKKGKNEKITMVSAYDYHSAKILDNCDIDIILVGD
                     SLAMTVLGMQDTLSVTMNEMLIFTKAVSRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGIFPSEEHSFDYLDDELLDKLY"
     gene            complement(3755..4645)
                     /locus_tag="ACJFD7_000628"
     CDS             complement(3755..4645)
                     /locus_tag="ACJFD7_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HGG0859468.1"
                     /translation="MIKIDIKLPINTAKGKKQLELNTCLKANEITAIFGESGAGKTTL
                     LKIIAGLIKPEFGRIEVGDELWLDTQKNINLAIQKRKIGFVFQDYALFPNMSVKENIS
                     YAATSKQKVEELLSLMNLENLAKIYPKNLSGGQAQRVALARALAREPQILLLDEPLSA
                     LDFKMRSFLQDELVKILQHFKITTLLVSHDLAEIYKLSHRILELSDGKIIKDARTNEF
                     FTSSNLSAKLRLSATLLEIKKSDILMIFTLLLNQDIVKITLSEEEFLRTYKNVKIGDT
                     LLLSIKAFNPIIVGKPDKQK"
     gene            complement(4655..5323)
                     /gene="modB"
                     /locus_tag="ACJFD7_000629"
     CDS             complement(4655..5323)
                     /gene="modB"
                     /locus_tag="ACJFD7_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HGG0859469.1"
                     /translation="MDNDFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVKFPFKSL
                     VQTFVALPLVLPPSVLGFYLLISFSQNSFLGQFLKEYFNLSLVFSFEGLVFASLIFSL
                     PFMVNPLQSAFSSINQNLLDASYALGKGKIYTLFRVILPNSKVGIFSACAMSFAHTIG
                     EFGVVMMIGGHKKGETLVASIAIYDELEVLNYTLAHQYAFTLFAISFAILLSLYFVNK
                     KIAL"
     gene            complement(5316..5717)
                     /locus_tag="ACJFD7_000630"
     CDS             complement(5316..5717)
                     /locus_tag="ACJFD7_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HGG0859470.1"
                     /translation="MNILNGKIIELLNEGEIVIVKISIKEHIFKVLMLDLHSLQDLKI
                     GTKIQVLFKEHELGFALPHSILSVENSFLARIKSIKKGKILYHIFFDFEGDEISSIIA
                     KEKALELKLEEGQEWLCFVKENDIILKAIYG"
     gene            complement(5714..6463)
                     /gene="modA"
                     /locus_tag="ACJFD7_000631"
     CDS             complement(5714..6463)
                     /gene="modA"
                     /locus_tag="ACJFD7_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_function: GO:0030973 - molybdate ion binding [Evidence
                     IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HGG0859471.1"
                     /translation="MKKLVLIFIVLFLSLNLNAQNLSVFVASSASKAMEEVKNEFLKS
                     HPNDNIDLVFGASGKYYQLLKQGREFDLFFSADTKYAQAIYEDQNALDKPKVYVLGIL
                     ALYSLDESLLEGGIEKLKDKANKIHHLSLANPKVAPYGVAAKEVLENLKLDKLFEDKI
                     VLGENISVPVLHVDSNNADLGIVAYSLVSSINHPKGKAILIDQKYFTPLKQSYVITRY
                     AKDKKLAFEFSDFISSQKAKEIFKKYGFDTP"
     gene            complement(6517..7203)
                     /gene="bioC"
                     /locus_tag="ACJFD7_000632"
     CDS             complement(6517..7203)
                     /gene="bioC"
                     /locus_tag="ACJFD7_000632"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010340 - carboxyl-O-methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HGG0859472.1"
                     /translation="MNFLKAKDYQKHAKVQDLMGLKLCEILKNLEISHFKKVFEFGCG
                     RGEFSDKLSKIITFDEYLKNDILDYPDNLNVEIFDMNTLATQILSKQKFDLITSNASL
                     QWLDLKQVLPTLANMLNEKGILLLSTFGKMNLKEIKQSTGLGLKYFSTKELEQIFKPY
                     FSDIKITEEIVNLEFQNALEVFKHLKLSGVNSLGFYRLNKQFLKEFEEKFQNKLTYHP
                     IFILCKKDTK"
     gene            complement(7200..7811)
                     /locus_tag="ACJFD7_000633"
     CDS             complement(7200..7811)
                     /locus_tag="ACJFD7_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pimeloyl-ACP methyl esterase BioG family
                     protein"
                     /protein_id="HGG0859473.1"
                     /translation="MKISNLIQNENSQELILVFGGFASHPSHFAHLKSDKNVVLVYDY
                     ENLDFKFDLKSFSKITLIAFSMGVCVASRVLKDIEFSQKIAINGTPFGIDKLKGIHPA
                     IFAKQIKKFDLTAFKKSLFKERKNEAKNFIFKDEKDLKTELEKLFEFASKECNENFIW
                     DKIYSSNNDEIFPQNALKNTFSKLIFLNEPHFAFFHFKTWDEI"
     gene            complement(7808..8950)
                     /locus_tag="ACJFD7_000634"
     CDS             complement(7808..8950)
                     /locus_tag="ACJFD7_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HGG0859474.1"
                     /translation="MSLENILEALEKNHNLRKLTSLKHEGNFVFKEGKKLLNLAGNDY
                     LNLSSCKSLKDEFLDNVKEQDLFFSSSSSRSLSGNFTIYEELESFLKSKFKEKEILHF
                     NSGYHLNISCIAALVSIPNTLFLVDKFIHASMIDGLKLGGAKFFRFHHNDMNHLENLI
                     QKHYDHYENIIILSEALFSMDGDFSDFNTLIAFKEKYPKIKLYIDEAHSVGCFDEEGL
                     GLVKALNLEEKVDFIVFTFGKALASMGACMICNNLYKSFFINKARAFIYSTALPPINI
                     AWTKFIFEKMSELKEKREKLQIIGNFFKNQLIEKNHQILGDAYIISLVLGENQKTIEL
                     AKKLETNGIFAPAIKEPTVPKNTARIRFSLHAGLSKEDLKKVIELL"
     gene            9017..10300
                     /locus_tag="ACJFD7_000635"
     CDS             9017..10300
                     /locus_tag="ACJFD7_000635"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004015 -
                     adenosylmethionine-8-amino-7-oxononanoate transaminase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HGG0859475.1"
                     /translation="MQNEILKKLDLEHIWHPCTQMKDHENLPLIPIKRAKGVWLYDFD
                     DKAYMDCVSSWWVNLFGHCNEKIANAIKKQVDELEHVILAGFTHEPIIKLSARLCEKV
                     GRNFNKCFYADNGSSAIEVALKMSFHYHLNKGVKKSKFLSLSNSYHGETLGALSVGDV
                     ALYKDTYKPLLLECLSTPVPQSKDYTQELEILKDILEKNASEICAFILEPLVQCAGNM
                     HMYEAGFIDEAIKLCHKFGVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITG
                     GFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAANAVLDIFEDENILV
                     KNQILSEFIKKEFSRLEKFDFLGNFRTCGMISAFDILSTKYKRVGLFVFQKALEKGLL
                     LRPLANTIYFMPPYIITKEQIVYVLESLEQIFKEF"
     gene            complement(10287..10892)
                     /locus_tag="ACJFD7_000636"
     CDS             complement(10287..10892)
                     /locus_tag="ACJFD7_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HGG0859476.1"
                     /translation="MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKALDIILPKSKNLLIELAGGLFSPM
                     DENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
                     DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP"
     gene            complement(10902..11216)
                     /locus_tag="ACJFD7_000637"
     CDS             complement(10902..11216)
                     /locus_tag="ACJFD7_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HGG0859477.1"
                     /translation="MEWFYLFLATACEIFGVVIMKELVSTKNKLYLLALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKSFLKLFLITVIIACTVGLKF
                     LS"
     gene            complement(11219..11557)
                     /locus_tag="ACJFD7_000638"
     CDS             complement(11219..11557)
                     /locus_tag="ACJFD7_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HGG0859478.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWHYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFNEAVSIIKLVLIAILLLSI
                     IALKWVSKEA"
     gene            11689..12225
                     /locus_tag="ACJFD7_000639"
     CDS             11689..12225
                     /locus_tag="ACJFD7_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HGG0859479.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            12222..12767
                     /gene="pth"
                     /locus_tag="ACJFD7_000640"
     CDS             12222..12767
                     /gene="pth"
                     /locus_tag="ACJFD7_000640"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HGG0859480.1"
                     /translation="MILVVGLGNIGVEYENTRHNVGFMLIDLLLKESNFTNLTNSKFK
                     GELFKIGSSLLLLKPSTYMNNSGLSVKAVNDFYKCERMIVIHDDIDINLGALRFKKGG
                     SSGGHNGLKSIDTLCGNDYERVRIGVGKGENVISHVLGKFKPEEEITLSKVLEHTKKA
                     LLELIENDDLSAISSKYSLKA"
     gene            12769..13827
                     /locus_tag="ACJFD7_000641"
     CDS             12769..13827
                     /locus_tag="ACJFD7_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HGG0859481.1"
                     /translation="MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAAN
                     LDLLYVMFLSFSAVPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFL
                     WALFFCCIYIGLNFTSFAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQ
                     NSAQNIKIFNINDLNLSSFVSAKNAYFEGESWILRDGNITLLPKNYELANDGLKIQDF
                     SELKSLEGFKPKIIEGVASNSDYSISDALESFELFKAQNVNTDALKINLYKFVFTPFF
                     APFLMLIMYYFFPVIARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIV
                     VPIIILGCLSAYMYYKHR"
     gene            13871..15079
                     /gene="lysA"
                     /locus_tag="ACJFD7_000642"
     CDS             13871..15079
                     /gene="lysA"
                     /locus_tag="ACJFD7_000642"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008836 - diaminopimelate decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HGG0859482.1"
                     /translation="MDYKQLKQEFNTPFYIYNFDFIKERFLNLKEAFKARKSQIFYAV
                     KANSNLSLLQMLANLDSGFDCVSIGEVKRALKAGAKAYKIIFSGVGKTKEELRQALEY
                     DILYINLESEAEMMLLESVAKELNLKARISIRVNPNVDAKTHPYISTGLNENKFGVEI
                     DIARKMYLYAKNSSFLEPVGVHFHIGSQLLDISPIHEAAAIVAKLARELKALQIDLKF
                     FDIGGGLGVAYEKDECEPDLYNYAQGILAQLHGLDLTIGMEPGRYLVAKSGEFVCSVL
                     YEKQNKTKRFVVVDGAMNDLIRPSLYEAYHEIILPYTQAQESLCDVVGGICESGDFFA
                     KARSLPSTQSGDIMVIKNTGAYGFSMSSNYNTRNKVCELALEEGQVRLIRQRENFENQ
                     IALEEKFLKA"
     gene            15081..15848
                     /locus_tag="ACJFD7_000643"
     CDS             15081..15848
                     /locus_tag="ACJFD7_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HGG0859483.1"
                     /translation="MFFLDVQGTLISDHDKSLIHGAKELIDFLNAKNLPYVIITNNTK
                     KLDFLEKLQQKGLAIKENAYIDPFSVLKHLLKPCKVAAFGADEFVKSLENLGFELDFV
                     NPSAVLVASYDDFKFVDFASMIELARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLK
                     NAIDFEYEVVGKPSIAFYKEALNLIRKQNSKIDFEDIKIISDDFRGDLLKAKELGMKT
                     LLVLSGKISDTKGLDTDLLDGVYPSVFEFLKELKCQI"
     gene            15836..16909
                     /gene="pheA"
                     /locus_tag="ACJFD7_000644"
     CDS             15836..16909
                     /gene="pheA"
                     /locus_tag="ACJFD7_000644"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HGG0859484.1"
                     /translation="MPNLEEFRNKIDAVDDKILELLNERMTYVKSIGELKQSSGGAIY
                     RPERERAIINRLKNANLGLLDQNAIEAIYQEIFAVSRNLEMPQTIAYLGPEGTYTHQA
                     ARSRFGAMSRYIALANIEDVFKELSNKEAKYGVVPIENNTEGAVGITLDCLGKYNELK
                     IFGEIYMDIHHSFVGINENLKEIKRIYSHPQGYNQCRKFLESHELSAIEFVPSKSTAN
                     AAYLASQDKYAAAICSRIAAKLYNVPVLFDKIEDNAANKTRFLILSDIKNPKMPNCKT
                     SILAHTAHKPGGLSFLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVK
                     KALKDIQEIVWLGSYLSGEKDEI"
     gene            16899..17993
                     /gene="hisC"
                     /locus_tag="ACJFD7_000645"
     CDS             16899..17993
                     /gene="hisC"
                     /locus_tag="ACJFD7_000645"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HGG0859485.1"
                     /translation="MKFNEFLNHLSNYEPGKDIEVIAKEYGVKEVIKLASNENPFGTP
                     PKAIECLRQNANKAHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHAKL
                     NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCL
                     PNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLKPCELIKEFDNV
                     LYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAPFNVSNLALKAAVAAINDDEFAK
                     KTLENNFSQMELYKEFAKKHNIKIIDSYTNFITYFFDEKNSTDLSEKLLKKGIIIRNL
                     KSYGLNAIRITIGTSYENEKFFTEFDKILR"
     gene            18045..19727
                     /gene="fliF"
                     /locus_tag="ACJFD7_000646"
     CDS             18045..19727
                     /gene="fliF"
                     /locus_tag="ACJFD7_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009431 - bacterial-type flagellum basal
                     body, MS ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body MS-ring/collar protein
                     FliF"
                     /protein_id="HGG0859486.1"
                     /translation="MDFKNMLHQIGQLYQNLTRKQRIVIAASIIVVVGFLVFLALFRG
                     SGSNANNGYAVLIENVSPSSSAAIVAKLEQNNIPYKLESENKILVPQDQVYRQRMFIA
                     SEGLIKDSRVGFEAFDTQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAF
                     PKDSVFTERQIPPTASVVVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSG
                     VPLDEQEAYEDDLVRAQIKFKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSK
                     QESQSEIYDPNPIVRSEQTLNEERTGRKDPEIQGVPGAVSNIGPVEGLDNKGQIDTYK
                     KNQVTTNNELSKTITNTKKQFATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEE
                     LASVESIVKNTINFSATRGDSVVVQNLPFHRESIRVESKVKTFYNRFVEPFIPPVKYF
                     IAAILLFIFYKKVIAPFTQKMLEDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEE
                     QLGFGDNFNEDSIQYEVLLEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKDM"
     gene            19727..20755
                     /gene="fliG"
                     /locus_tag="ACJFD7_000647"
     CDS             19727..20755
                     /gene="fliG"
                     /locus_tag="ACJFD7_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HGG0859487.1"
                     /translation="MIKLSEEQKMVYDDLSMPEKVAIFLIQLGEDATTSVFSHMEIDV
                     ITEISRYIAMAKNVDRSVATAVLEEFYTLLQSNQYIKSGGLEYAKEILFRTFGPEIAN
                     KILEKLTKSMENNQNFAYLAQIKPQQLADFITKEHPQTIALILAHMDSIHAAETLEYF
                     SDELRAEVVIRMANLGDISPSIIKRVSAVLESKLESLTSYKVEVGGPRAVAEVLNRLG
                     QKASKSTITYIEQSDERLAETIKELMFTFDDIQKLSTQAIREILKVADKRDLMIGLKG
                     ASEELKQKFLANMSTRASEAFLEEMGFLGAVRVKDVEDAQRKVVEVVQKLAEQGLVQT
                     GDADEMIE"
     gene            20763..21593
                     /gene="fliH"
                     /locus_tag="ACJFD7_000648"
     CDS             20763..21593
                     /gene="fliH"
                     /locus_tag="ACJFD7_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HGG0859488.1"
                     /translation="MVNRSNVISGGASDQHVVEGYRFKVISEFDNHTGEKKHTQTPDE
                     ENTNISLNDEKPVEENQVIASTQAVMETQIPTFQPSFVEDLLKKTDEMSSNIIKLQMQ
                     IESQENEFNNRLNSELENAKEKFTKEGYEKAKEEFQKELSDFKDKYLKSIAKLDNACE
                     NLENFIEKNEKELADTAIDIAKEVILKELELNSSKIAYALAKDLIGELKGASAIELKV
                     NAEDYEYLKEQFDQNAHIKISLDDAISKGSVVIISDAGNIESNLNSRLTKIKKMVNNE
                     "
     gene            21586..>23393
                     /gene="dxs"
                     /locus_tag="ACJFD7_000649"
     CDS             21586..>23393
                     /gene="dxs"
                     /locus_tag="ACJFD7_000649"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HGG0859489.1"
                     /translation="MSKKFAHTQEELEKLSLKELENLAASMREKIIQVVSKNGGHLSS
                     NLGAVELSIAMHLVFDAKKDPFIFDVSHQSYTHKLLSGKEEIFDTLRQINGLSGYTKP
                     SEGDYFVAGHSSTSISLAVGACKAIALKGEKRIPVALIGDGALSAGMAYEALNELGDS
                     KFPCVILLNDNEMSISKPIGAISKYLSQAMATQFYQSFKKRIAKMLDILPDSATYMAK
                     RFEESFKLITPGLLFEELGLEYIGPIDGHNLGEIISALKQAKAMQKPCVIHTQTIKGK
                     GYALAEGKHAKWHGVGAFDIDSGESVKKSDTKKSATEIFSKNLLDLASKYENIVGVTA
                     AMPSGTGLDKLIEKYPNRFWDVAIAEQHAVTSMAAMAKEGFKPFIAIYSTFLQRAYDQ
                     VIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDEQMMQNI
                     MEYAYLHQGPIAFRYPRGSFILDKEFNPCEIKLGKAQWLVKNSSEIAFLGYGQGVAKA
                     WQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINS
                     FLQKYDLHVKVVSFEYEDKFIEHGKTSEVEKNLEKDV"
BASE COUNT         8146 a         3304 c         4051 g         7892 t
ORIGIN      
        1 aaaaaatatg ttaaaatcca gatttttatc ttttgcaagg aagacaatga aagaaattct
       61 tatcactaat gacgatggtt atgaaagcga aggacttaaa aaactcatta agatgttaac
      121 aaaagaattt aaagccaaga tcaccatagt agctcctgct agtgaaaaat cagcttgttc
      181 gcactctata accctaacca aacctttgcg ttttgttaaa gtgggaaaaa gattttacaa
      241 acttgatgat ggcactccag cagattgtgt ttatcttgct ttgcatgctt tatacaaaaa
      301 gcgtttgcct gatcttgtaa taagtgggat taataaaggt gctaatgtag gcgaggatat
      361 tacctactca ggaacttgcg caggagctat ggaggcggtt ttacaaggaa ttcctgctat
      421 cgctctttct caattttata aaaaaagcga aaaagaacta gactataaaa atgctttaca
      481 aattaccaaa aaaatcattc aaaatatttt tgataaaggt tttcctttgg aaaaaaaaga
      541 atttttaaat atcaattttc ctgcaaaatc aaaaatcaaa ggcattaaaa tttgtaaagc
      601 aggcaaaagg gtttataatt ttgaagccca ttcaaatgtc aatccgagag gagtagagta
      661 ctattggctt gcagcggcga atttagactt tgaagatgag aaaaatagcg atattgcctt
      721 acttaaaaaa ggctacgcta caataacacc tataatgctg gatcttacag cttatgaaag
      781 aatgaaaaaa gttaaaaaat ggttaaaggc aaatgatgaa tgatagattt acacgtataa
      841 aatggctagt tggagaagaa aaatttcaaa aaatttcaca aacaaaagtt ttggtttgcg
      901 gacttggtgg agtgggtgga atttgcgttg atgcgcttta tcgtagtggt tttaaaaacc
      961 ttactttaat cgatgcggat aaatttgaaa tcactaatca aaatcgccaa attcatagcg
     1021 aaaatatagg cgaagaaaag gctaaagtat ttgaaagaat ttataaggct aaaggtatag
     1081 tcagcaaaat cgatgaagat tttttaaaaa attttgattt aagcgagttt gatcttatca
     1141 tagatgccat tgatgatatc cctgcaaaag tagctttggc tcatcttata gattttaaaa
     1201 aacaaatttt tatctcttca acaggtggag ctagaaagct tgatccaaca cgcattaaaa
     1261 ctacaagtat ttttaaaact cacggcgatg ctttagcaaa aaaatttcgt tacgagctta
     1321 gaaaatcagg ttttaaagga aattttgatg tggttttttc agatgaggaa gcgcattgta
     1381 aagatcttgg atctttcatg ggtgtgactg catcttttgg tttagcttta gcaagtttag
     1441 cattaagaaa agttcttgct agataagatt gaaatttaaa tatttatctt agataaatga
     1501 atttatctaa gatagaaaaa attacaaaaa tagttagata ttagaaaata gctccgtgtt
     1561 tttcataatt tgttattttt gtagcagtgt tattttcatc tacaaagaca acttttggtt
     1621 taaatgtttt tgcttcttct tcgttaaaat cagcataaga cataatgatc actttatctc
     1681 ctacttcagc aagacgagcc gcagcgccat ttaagcatac aaccccttct tcttgcgtag
     1741 cgatggtgta ggtttcaaat ctagcgccat tattgacatt gactacttga actttttcgt
     1801 attctaaaat tccactcgct tgcaataatt tttcatctat gcttatgctt cctacataat
     1861 caagcctagc ttctgttacg tttgcacggt gtatttttga tttgagtaaa gtaatgttca
     1921 ttttaatcct tgtactaaaa aattatcaat gagtcttgtt tttccaacaa aagcagccac
     1981 tgctcctaaa acattatcgg cgatattttt aatattttcc atagtgttaa aatcaactaa
     2041 ttctatataa tcgattttga ttaatttttc tttttctaaa atatctttca tagcttggat
     2101 aattttggaa gtatcttttt ctccttcttg gactaatttt tcagctaaaa aaatgctttg
     2161 agatatagct agtgacgctt ttctttcttc ttcgctaaga tatacatttc tagagctttt
     2221 agctaagcca tcttcttctc taatgatagg acaaatttga atttttaaat caaaatttaa
     2281 atcatcaacc atatgtctaa cgactacgca ttgctgcgcg tctttttgcc ccatatagac
     2341 tatatcaggg tttaggatat taaaaaattt agccaaaact gtgcaaacgc ctctaaaatg
     2401 ccccagtctt ttagctccac aaagcttatc cgtgatcgtg ttcatatcca cataggtgct
     2461 aaaattctta agatacattt gagctgcatc ggggataaaa accatatcaa cgccattatc
     2521 ttgacacatt ttaatgtcgc gttctaaatc tcttggataa ctagaaaaat cttcattagg
     2581 gccaaattgc ataggattta caaagatact tactatgact ttatcttgtg ttttggcatt
     2641 tttgactaaa cttaaatgcc catcgtgtaa aaagcccatg gttggaacat agcctatgct
     2701 aaggttatgt gatttccaat tttttacaat ttgttttgct tctttgatag aagtaatgac
     2761 ttccatattt gtatccttag tataatttat ctaataattc atcatctaaa taatcaaagc
     2821 tgtgctcttc ggaaggaaaa ataccgcttt taacttcatc tctatatttt tcaactccta
     2881 cttgagggtc aattttatca aaatgcttta caaattttgc tttaaaatct ttatttaaac
     2941 ctaaaagatc atgataaact aaaacttgtc catcgcagta tttacctgaa cctatgccga
     3001 ttgttggaat ttctaaaata gagcttattt tttgtgctaa ttttacaggt acgcattcta
     3061 aaaccaacat acaagcaccc gcatcttgca cagcttttgc atcatctatg attttttgag
     3121 ccgattgtaa atctttacct tgaactctat atccacctag catatttaca gcttgtgggg
     3181 ttagtcctag gtgagcaacg acgggtattc ctgattggga aatcaattta atcttgcttg
     3241 cgatttctat acccccttcc acttttaccc catttgcatg gctttctttg ataaatcttg
     3301 aggcatttaa gatagcgtca cgatccgagc tttgataaga catgaaaggc atatccgcaa
     3361 gtacgaaaga ctttttagct ccgcgagaaa cagctttggt aaagatcaac atttcattca
     3421 tggtcacact taaagtatct tgcatgccaa gcactgtcat agctaatgaa tctccaacca
     3481 atatgatatc tatatcgcaa ttatctagaa tttttgcact atggtagtca taggcactta
     3541 ccatggttat tttttcattt ttaccttttt tttccaaaaa actaagaata ctttttctca
     3601 tttaaaatac ctcgtttagc tataaaatag taagcaaaaa actagcatat aaattttcat
     3661 aaatagtaaa taaacgataa aacaaaatat atttaattaa tggattgttt taatggttat
     3721 aattttggaa aatttctata gaaaaattaa atttttactt ttgtttatca ggttttccta
     3781 cgatgatagg gttaaaggct tttatggata gtaaaagcgt atcgccgatt tttacatttt
     3841 tataagttct taaaaattct tcttcgctaa gtgtgatttt aacgatatct tgatttaaaa
     3901 gtagggtaaa aatcatcaaa atatcacttt ttttaatctc aagcaaagtt gcacttaaac
     3961 gcagtttcgc acttaaattt gatgaggtaa aaaattcatt tgttcttgca tctttgatga
     4021 tttttccatc actaagctct aaaattctat gacttaattt gtaaatttca gccaaatcgt
     4081 gacttaccaa taaagtagtg attttaaaat gttgtaaaat tttcacaagc tcatcttgca
     4141 aaaaagatcg cattttaaag tctaatgcac tcaaaggctc atctaaaagt aaaatttgcg
     4201 gttctctcgc taaagccctt gctaaagcca ctctttgtgc ttgtccaccg cttaaatttt
     4261 tgggataaat tttggctaaa ttttctaaat tcattaagct taaaagctct tctacttttt
     4321 gttttgaagt cgcagcgtaa gaaatgtttt cttttacgct catatttgga aaaagagcat
     4381 aatcttgaaa aacaaagccg atttttcttt tttgtatggc taaattgata tttttttggg
     4441 tatcaagcca aagctcatct cctacttcta tgcgcccaaa ttcaggtttt ataagtcctg
     4501 caatgatttt aagtagagtc gtttttcccg caccgctttc tccaaaaata gcagtgattt
     4561 catttgcttt taggcaagtg tttaattcta gttgcttctt gccttttgct gtgttaatgg
     4621 gaagttttat atcgattttt atcataaaat tggcctatag agcgattttt ttgttcacaa
     4681 aataaagact taagagtatg gcaaaagaaa tcgcaaataa agtaaaagcg tattgatgtg
     4741 ctaaggtata gtttaaaact tcaagctcat cataaatagc aatacttgcg accaaagttt
     4801 cacctttttt gtgtccacct atcatcatca ccactccaaa ttcaccaatg gtgtgtgcaa
     4861 aactcatcgc gcaagcacta aaaatcccta ctttagaatt gggtaaaatc actctaaaaa
     4921 gtgtataaat tttacccttt cctagagcat aagaagcatc aagtaggttt tgattgattg
     4981 atgaaaaagc actttgtaaa ggatttacca taaagggcag agaaaaaatc aaagaagcaa
     5041 atactaaacc ttcaaagcta aaaaccaaag aaaggttaaa atattctttt aaaaattgtc
     5101 ctaaaaagct gttttgtgaa aagcttatga gtaaataaaa tcccaaaaca cttggaggca
     5161 aaaccaaggg caaagctaca aaggtttgca ccaagctttt aaaaggaaat ttcacaaagc
     5221 ttaaaagata ggctaaaaat actccgatga aaaagagtat aaaggtagtg ataaatgcaa
     5281 gtttaaaggt aagataaagg gtttgtaaaa aatcattatc cataaatagc ctttaaaatg
     5341 atatcgtttt ccttgacaaa gcaaagccat tcttgtcctt cttcgagctt aagctctaag
     5401 gctttttctt tagcgataat gctagaaatt tcatcaccct caaaatcaaa aaagatatga
     5461 tatagaattt tgcccttttt aatactttta atccttgcta gaaatgaatt ttccacactt
     5521 aaaatagaat gaggcaaggc aaagccaagt tcgtgttctt taaaaagcac ttgaattttt
     5581 gtacctattt taagatcttg caaagaatga agatcaagca ttaaaacttt aaaaatatgc
     5641 tctttaatac tgatcttaac gatgacaatc tcaccctcat ttaaaagctc tataatcttg
     5701 ccatttaaga tattcaaggt gtgtcaaatc cgtatttttt aaagatttct tttgcttttt
     5761 gtgagctgat aaaatcgcta aattcaaagg ctaatttttt atctttagcg tatcttgtga
     5821 tgacatagct ttgttttaaa ggggtgaagt atttttgatc gattaaaata gctttgccct
     5881 taggatgatt gatagaagat actaaagaat aagccacaat acccaaatcc gcattattgc
     5941 tatcgacatg taaaacgggc acggagatat tttcacctaa aacaatttta tcttcaaaga
     6001 gtttgtctaa ttttaaattt tcaagtactt ctttagcagc tactccataa ggagcaactt
     6061 ttggatttgc aaggcttagg tgatgaattt tatttgcttt atcttttagc ttttctatcc
     6121 caccttcaag taagctttca tctaagctat ataaggctaa gatacctaaa acataaactt
     6181 ttggtttatc taaagcgttt tgatcctcat aaattgcttg cgcgtatttt gtatcggctg
     6241 aaaaaaatag atcaaattct ctcccttgtt tcaaaagttg ataatacttt cccgaagcac
     6301 caaaaacaag atctatattg tcattagggt gtgattttaa aaattcattt ttgacttctt
     6361 ccatagcttt tgaagctgaa gaagctacga aaacacttaa attttgtgca tttaaattta
     6421 aagataaaaa caacactata aaaattaaca caagcttttt cactgcactt tcctttgtag
     6481 ataatcttga ttttttgtat tataacataa gaaattttat tttgtatctt ttttgcataa
     6541 aataaaaata ggatgataag tgagtttatt ttggaatttt tcttcaaatt cttttaagaa
     6601 ttgcttgttt aagcgataaa atcccaaaga atttaccccg cttaatttca aatgcttaaa
     6661 aacctctaaa gcgttttgaa attccaaatt tacaatttct tcagtgattt taatatcaga
     6721 aaaatagggt ttaaaaattt gttcaagttc ttttgtgcta aaatatttta aacccaagcc
     6781 tgtgctttgt ttgatctctt ttaaattcat ttttccaaaa gtagaaagaa gtaaaattcc
     6841 tttttcattt aacatatttg ctagtgtggg caaaacctgc tttaaatcaa gccattgcaa
     6901 actcgcatta gaagtgataa gatcaaattt ttgcttgctt aaaatctgtg tagctagggt
     6961 attcatatca aaaatttcca cattaagatt gtcaggataa tccaaaatat cattttttag
     7021 atattcatca aaagtgataa tttttgaaag tttgtcgcta aattcgcccc taccacaacc
     7081 aaattcaaac acttttttaa aatgcgaaat ttctaaattt tttaaaattt cacaaagttt
     7141 taaacccatt aaatcttgca cttttgcgtg tttttgataa tcttttgctt ttaaaaaatt
     7201 caaatttcat cccaagtttt aaaatgaaaa aaagcaaaat gtggctcatt taggaaaata
     7261 agctttgaaa aagtgttttt taaagcattt tgaggaaaaa tttcatcatt attgcttgag
     7321 taaattttgt cccaaataaa gttttcatta cactcttttg aggcaaattc gaaaagtttt
     7381 tcaagctcgg tttttaaatc tttttcatct ttaaaaataa agttttttgc ttcatttttg
     7441 cgctctttaa ataaagattt tttaaaagcc gtgagatcaa attttttaat ttgcttagca
     7501 aaaattgcag gatgaattcc ttttaattta tctatgccaa aaggagtgcc attgatagct
     7561 attttttgcg aaaactctat atcttttaaa actctacttg ctacgcaaac tcccatagaa
     7621 aaagctatga gagtgatttt agaaaaagac tttaaatcaa atttaaagtc taaattttca
     7681 taatcataaa ccaaaactac atttttatcg ctttttaaat gtgcaaaatg gctaggatgt
     7741 gaagcaaaac cgccaaatac taagataagt tcttgtgagt tttcattttg aattaaattg
     7801 cttattttca taaaagttct atcactttct ttaaatcttc tttactaagt cctgcatgca
     7861 aagaaaaacg aattctagct gtatttttag gcaccgtagg ttcttttata gcgggtgcaa
     7921 aaatgccatt tgtttcaagt ttttttgcta attctatagt cttttgattt tctcccaaaa
     7981 ccaaggagat gatgtaagca tcgcctaaaa tttgatgatt tttttctatg agttgatttt
     8041 taaaaaagtt gcctatgatt tgtaattttt ctcttttttc ttttagctcg ctcatttttt
     8101 caaaaataaa ttttgtccaa gctatattga taggaggcag cgctgtagaa taaataaaag
     8161 ctctagcttt gttgataaaa aagcttttat aaagattatt acaaatcatg caagcaccca
     8221 tagaagcaag agccttgcca aaggtaaaaa ctataaaatc aaccttttct tccaaattta
     8281 aagctttaac aagtcccaag ccctcctcat caaagcaacc cacgctgtgc gcttcatcga
     8341 tataaagttt gattttaggg tatttttctt taaaggcgat gagtgtatta aaatcagaaa
     8401 aatcaccatc catgctaaat aatgcttcgc ttaaaatgat gatattttca taatgatcat
     8461 aatgtttttg aattaaattt tctaaatgat tcatatcgtt atgatgaaag cgaaaaaatt
     8521 ttgctccgcc aagttttagt ccatcaatca tacttgcatg gatgaattta tctactaaaa
     8581 aaagtgtatt tggaatgctc acaagtgcag ctatacaaga gatattaaga tgataaccgc
     8641 tgttaaaatg taagatttct ttttctttaa atttggattt taaaaagctt tctaattcct
     8701 cataaattgt aaaatttcca ctcaagctcc ttgaacttga gcttgaaaaa aataagtctt
     8761 gttctttgac attatctaaa aattcatctt ttaaagattt gcaagagctt aaatttaaat
     8821 aatcattccc cgctaaattt aaaagctttt taccctcttt aaaaacaaaa tttccttcat
     8881 gtttgaggct tgtaagtttt ctaagattgt gatttttttc aagggcttct aagatatttt
     8941 caaggctcat ttttttccta aaattcagaa atttaaagta ttattttgcc aaaatatatt
     9001 taaaaaagaa gttataatgc aaaatgaaat tttaaaaaaa ctcgatttag agcatatttg
     9061 gcacccttgt acgcaaatga aagatcatga aaatttgcca ctcattccta taaaaagagc
     9121 taaaggagtg tggctttatg attttgatga taaggcttat atggactgtg tgagctcgtg
     9181 gtgggtaaat ctttttgggc attgtaatga aaaaatcgca aatgccatta aaaaacaagt
     9241 tgatgagcta gagcatgtga ttttagcagg ttttacacat gagcccatca tcaagctttc
     9301 tgcaagactt tgcgaaaaag taggcaggaa ttttaacaaa tgtttttacg cagataatgg
     9361 ttcaagcgct attgaagtcg cacttaagat gagctttcat tatcatttaa ataagggagt
     9421 gaaaaaaagt aaatttttat ctttaagtaa ttcttatcat ggtgaaacct taggagcctt
     9481 aagtgtagga gatgtagcac tttataaaga tacttataag cctttacttt tagagtgttt
     9541 aagcacgcct gtgccacaaa gtaaagatta cactcaagag cttgaaattt taaaagatat
     9601 tttagaaaaa aatgcaagtg aaatttgtgc ttttatactt gaacccttgg tgcaatgtgc
     9661 aggaaatatg catatgtatg aagcagggtt tattgatgag gccataaagc tttgccataa
     9721 atttggagtg caagtgattt ttgatgaaat tgcagtgggc tttggacgca caggaacttt
     9781 gtttgcctta catcaatgca aacaaagccc cgattttatc tgcctttcaa aagggataac
     9841 gggtggattt atgccacttt ctgtagtgct tacaagagat gaaatttata atgcttttta
     9901 tgatacttat gaaagccaaa aggctttttt acattctcat agctatacgg gaaatacctt
     9961 agcttgcgcg gcagcaaatg cggttttaga tatctttgag gatgaaaata ttttagtaaa
    10021 aaatcaaatt ttaagcgagt ttatcaaaaa agaattttca agacttgaaa aatttgactt
    10081 tttgggtaat tttagaactt gcgggatgat cagtgctttt gatattttaa gcaccaagta
    10141 taaacgcgta ggactttttg tatttcaaaa agccttagaa aaaggtttgc ttttaagacc
    10201 tttagcaaat acgatttatt ttatgcctcc ttacatcatc acaaaagaac aaatcgttta
    10261 tgtactagag agtttagagc agatttttaa ggaattttaa gttgtaaaat ttcttgcatt
    10321 tgctctttaa aatctttatt taaaatgcta ttttcatcaa aaaaatcaag attgattata
    10381 ggaatttttg cataattttt tataaaatca tcttgtaaga tatctttttt acccatcatt
    10441 acaagggcta aaagattgat atttctttgc tttaaagctt caatgctaag caagatatga
    10501 ttaatgcttc caagatagta ttttgctacc aaaatcgtag ggtgtttgaa aatattcaca
    10561 aaatcaatca tagtgtaatt ttcatccata ggagaaaaaa gcccacccgc aagctcaata
    10621 agtaggtttt tgctttttgg taaaatgata tctaaggctt tataatcaag cttttctttg
    10681 atttttccaa gatgaggaga agctggagtt tgcaaaaaaa taccttcttt aaaaatcttt
    10741 gtttttgggc taaattttgc aataaactcg ctatctgttg gagttcctgc ttgaatgagt
    10801 ttaaaataat catagttaaa attcgcacaa aaagctgcac taaaatgtgt ttttcctaca
    10861 tcagtatgta ttccactcac ataaatttgc acaaaaaatc cttaagaaag aaattttaaa
    10921 cctactgtac aagcaataat cacagtgatt aaaaaaagtt ttaaaaaact tttactttct
    10981 ttataaaaaa gcactcctat cattacccca ccagcggttc cagctcctgt ccatatagca
    11041 taagcaacgc tcatagcgat attttgcata cttaagctta aaaaagtaaa agaaaatcca
    11101 aaacacacta tcaaagctaa aaggtaaagc ttgtttttag tgcttacaag ttctttcatg
    11161 atcaccacac caaaaatttc acaagcagta gctaaaaaca aataaaacca ttccataact
    11221 aagcttcctt gcttacccat ttaagggcta taatgcttaa aagtaaaatc gctataagca
    11281 caagtttaat tatagaaaca gcctcattaa aaataaacat ttcatttaaa accactccta
    11341 tagtgccaat gcctacaaaa acactataag taatgcttac ttcaagtctt tcacaagctt
    11401 ttaaaaaaca agtaaaagaa atacaaaccc caatggctgt taaaatatag tgccaaattt
    11461 ctgtagaata cttaagtcca cttacccaaa aacattctat aatcccgcct aagattatta
    11521 aaaaccaagc tatattgata ttgaattttt cattcacatg aagccttaaa ttaacataat
    11581 ttataaaaca aattatatct taaagaaatt aaaagaagct ataaatttac ttttccataa
    11641 gccaaaatta gatataatca aagctcattt tttaagaaag gacaaaagat gttagaaggt
    11701 atcgttagag agagtatcgg tagaaaagct gctaaagctt taaaaagaga tggttatcta
    11761 atcgcaaaca tctatggaaa aggattagaa aacatcaatg ccgcttttaa agtaaatgag
    11821 tttattaagg aagttcgtaa aaaaactact ttaatttttg atgtaaaagt aggttctcaa
    11881 actttaagcg ttgtagttgt ggattatcaa aaagatcctg taactgcaga acttaaacat
    11941 gtggatttaa aagttgcaca aaaaggtgtg atttctaaat acatggttcc agttaaaatc
    12001 acaggaacag ctataggtct taaaaataaa ggtgttttaa tccaatcaaa aagaagatta
    12061 aaagtaaaat gtgcagctga aaatttacca aattttttcg aacttgatgt aagtaaactt
    12121 gatgtgggtg atgctttact tgttcgtgat attgtagttc ctgcgggagt aactatgatt
    12181 gatgctgata gagtagcggt tgtaggtgta gaaaaagcta gatgatttta gtcgtagggc
    12241 ttggcaatat aggcgtagag tatgaaaata cccgccataa tgtcggtttt atgctaattg
    12301 acttgctttt aaaagaaagc aattttacaa atcttacaaa ctctaaattt aaaggagaac
    12361 tttttaaaat aggttcttct ttacttcttc ttaaacctag tacttatatg aataattcag
    12421 gacttagtgt aaaagcagtg aatgattttt ataaatgcga aagaatgata gttatccatg
    12481 atgatataga tataaattta ggagccttgc gttttaaaaa aggcggttca agtggtggac
    12541 ataatgggct taaaagcata gatactttat gtggaaatga ttatgaaaga gtgcgtatag
    12601 gagtgggaaa gggtgaaaat gtgatttccc atgttttagg taaatttaaa cccgaagaag
    12661 aaataacctt aagcaaagtt ttagagcata caaaaaaagc tttgcttgag cttattgaaa
    12721 atgatgattt gtctgctata tcatctaaat acagcctaaa ggcttaagat gtggatattt
    12781 tttcgtttta tttcagggat ttatttaaaa aattttttta ttatattttt ttctttgctt
    12841 ggtttttatt gcggtattga tttgctctta aattttaaag atctaccaaa agccgcaaat
    12901 cttgatttgc tttatgttat gtttttatct ttctcggcag tgccttatgt attacccatt
    12961 tctttgattt ttgctttggt agtttctttg atttctatga tcagagcaaa tgaatttgta
    13021 agtctttatg cattaggact gagcagaaat tatgttattt tatttccttt tttatgggct
    13081 ttattttttt gttgtattta tataggattg aattttactt cttttgctta tgcaaatgat
    13141 tataagagaa atattttaaa aaatggtact attatgaatc aaagtggaga agtgtttttg
    13201 aaatttaaca ataattttgt ttatatttca aagataaaca atggacaaaa tagtgctcaa
    13261 aatataaaaa tttttaatat caatgattta aatttaagct cttttgtaag tgctaaaaac
    13321 gcctattttg aaggtgaaag ttggattttg cgagatggta atattacatt attacctaaa
    13381 aattatgaac ttgctaatga tggtttaaag atacaagatt tctccgagct taaatcactt
    13441 gagggtttta aaccaaagat tatagaaggg gttgctagta atagtgatta ttcaatatct
    13501 gacgcacttg aaagttttga gctttttaag gcgcaaaatg tcaatacaga tgctcttaaa
    13561 atcaatcttt ataaatttgt ttttactcct ttttttgcac catttttaat gcttattatg
    13621 tattattttt ttcctgtaat agcaagattt tttaatcttg cttttgtaac ttttatagct
    13681 tttgtagtga ctttgatgat ttggggagtc ttgtttttgc ttactagatt aagcgaaaat
    13741 agtgtgattg caagtgaaat tggcattgta gtgcctatta taattttggg ttgtttaagt
    13801 gcttatatgt attataagca tcgataaatt aagctttgtg tagtaaaatt ataaaaatta
    13861 aaggttaaat atggattata aacaattaaa gcaagaattt aatactcctt tttatattta
    13921 caattttgat ttcataaaag agcgtttttt aaatctcaaa gaggctttta aggcaagaaa
    13981 atctcaaatt ttttacgctg taaaagccaa ttcaaattta agtttgttgc aaatgcttgc
    14041 aaatttagat agtggatttg attgtgtaag tataggcgag gtaaagcgtg ccttaaaagc
    14101 aggagcaaaa gcttataaga ttatttttag tggagtagga aaaaccaaag aagagttaag
    14161 acaagcttta gaatatgata ttttatatat taaccttgaa agcgaagctg aaatgatgct
    14221 tttagaaagt gtggctaaag aacttaatct aaaggcaaga atcagtattc gtgttaatcc
    14281 aaatgttgat gcaaaaactc atccttatat ttctacagga ttaaatgaaa ataaatttgg
    14341 tgttgaaatt gacatagcaa gaaaaatgta tctttatgca aaaaattcat cttttttaga
    14401 gcccgttgga gtgcattttc atataggttc gcaactttta gatatttctc ctattcatga
    14461 agcagcagcc attgttgcaa aacttgcaag agagttaaaa gccttgcaaa ttgatcttaa
    14521 attttttgat ataggcggtg gcttgggtgt ggcttatgaa aaagatgagt gcgaacctga
    14581 tctttataat tatgcacaag gtatattagc acaacttcat gggcttgatt taaccatagg
    14641 aatggagcct ggaaggtatt tagttgctaa aagtggagaa tttgtttgtt cagtacttta
    14701 tgaaaaacaa aataaaacca agcgttttgt tgtagtagat ggagcgatga atgatcttat
    14761 acgcccaagt ttatacgagg cttatcatga aataatctta ccttatactc aagcccaaga
    14821 gagtttatgt gatgttgtag gtggaatttg tgagagtgga gacttttttg ctaaagcaag
    14881 gtctttacct agcactcaaa gtggtgatat aatggttatt aaaaatactg gagcttatgg
    14941 ttttagcatg agtagtaact acaatactcg taataaagtt tgcgaattag cccttgaaga
    15001 aggacaggta agattgatcc gtcaaagaga aaattttgaa aatcaaatcg ctttagaaga
    15061 gaaattttta aaggcttaaa atgttttttt tagatgttca agggacttta atttctgatc
    15121 atgataagag tttaatccat ggcgctaaag aattgatcga ttttttaaat gcaaaaaatc
    15181 ttccttatgt tatcattact aacaatacaa aaaaacttga ttttttagaa aaattacagc
    15241 aaaaaggatt ggctataaaa gaaaatgctt atattgatcc ttttagcgtt ttaaaacacc
    15301 ttttaaaacc ttgtaaagtt gcggcttttg gtgcagatga gtttgtaaaa agtcttgaaa
    15361 atcttggttt tgaacttgat tttgtaaatc ctagtgctgt gcttgtagct agttatgatg
    15421 attttaaatt tgtagatttt gctagtatga tagaattggc tagaagagaa gttaggttta
    15481 tagctatgca cgaaactagc atttataaaa aagatggtag gccttatcct ggtgtaggta
    15541 gcattatggc tatgcttaaa aatgctattg attttgaata cgaggttgtg ggtaagccta
    15601 gcattgcttt ttataaagaa gctttaaatt tgataagaaa acaaaattca aaaatcgatt
    15661 ttgaagatat taaaatcatt agtgatgatt ttagaggaga cttgcttaag gcaaaagaac
    15721 ttggcatgaa aaccttgctg gttttaagcg gaaagataag cgacacaaaa gggcttgata
    15781 cggatttgct tgatggagtt tatcctagtg tttttgagtt tttaaaggag ctaaaatgcc
    15841 aaatttagaa gaatttagaa ataaaatcga tgcggttgat gataaaattt tagaactttt
    15901 aaatgaaaga atgacttatg ttaaaagtat aggcgagctt aaacaaagta gtgggggagc
    15961 tatttatcgt cctgagcgtg aaagagccat tatcaatcgt ttaaaaaatg caaatttagg
    16021 acttttagat caaaatgcca tagaggcaat ttatcaagaa atttttgcag tttcaagaaa
    16081 tttagaaatg cctcaaacta tagcttattt agggcctgag ggaacttata ctcatcaagc
    16141 agcaagaagt cgttttggtg cgatgagtcg ttatatagcc ttggctaata tcgaagatgt
    16201 ttttaaagag ttaagcaaca aagaagcaaa atacggtgtt gtgcctatag aaaataatac
    16261 cgaaggtgca gtaggtatta ctttagattg tctaggtaag tataatgagc ttaaaatttt
    16321 tggtgaaatt tatatggata ttcatcattc ttttgtggga attaatgaaa atttaaaaga
    16381 aatcaaacgc atttattcgc atccgcaagg ttataatcaa tgtcgtaaat ttttagaaag
    16441 tcatgaactt agtgctatag aatttgttcc ttcaaaatct acagctaatg cagcttacct
    16501 agcttcgcaa gataaatatg cggcagcaat ttgttctaga atagcggcta agctttataa
    16561 tgtgcctgta ctttttgata aaatagaaga taatgcagcc aataaaacaa gatttttaat
    16621 tttaagcgat attaaaaatc ctaaaatgcc aaattgtaaa acttctattt tagcacacac
    16681 agcacataaa cctgggggac ttagcttttt attagagcag tttaaaaaag aaaatatcaa
    16741 tcttactaag cttgaatctc gccctgtaaa atcaaaagaa tttttacaca gtttttatat
    16801 agattttgaa gggcatattg atgatgaaaa tgtaaaaaaa gccttaaaag atatacaaga
    16861 gattgtttgg cttggatctt atttatcagg agaaaaagat gaaatttaat gaatttttaa
    16921 atcatttaag caattatgaa cccggaaaag atatagaagt tattgctaaa gaatatggcg
    16981 ttaaagaagt gataaaatta gcaagcaatg aaaatccttt tggcacgcca ccaaaagcta
    17041 tagaatgttt aagacaaaat gcaaataaag cccatcttta ccctgatgat agtatgatag
    17101 aacttaaaag cacattggct caaaaataca aagttcaaaa tgaaaatatt atcatcggtg
    17161 caggtagtga tcaagtgatt gaatttgcta tacatgctaa gttaaattct aaaaatgctt
    17221 ttttgcaagc tggagttacc tttgctatgt atgaaattta tgccaaacaa tgtggtgcaa
    17281 agtgttataa aactcaaagt attactcata atttagatga gtttaaaaaa ctttatgaaa
    17341 cgcacaaaga tgaaattaaa cttatttttt tatgcttacc aaacaatcct ttaggcgagt
    17401 gtttggatgc aagtgaggcg accgagttta ttaaaggtgt aaatgaggat tgtttagttg
    17461 tgattgatgc agcttataat gaatttgcaa gttttaaaga tagcaaaaaa catttaaaac
    17521 cttgcgaatt gattaaagaa tttgacaatg tactttattt aggaactttt tctaagcttt
    17581 atggattagg aggtttacgc attggttatg gtatagctaa tgctaatatt attagtgcat
    17641 tttacaagct tcgtgcgcct tttaatgtga gtaatcttgc tttaaaagca gcagttgcag
    17701 caataaatga tgatgaattt gctaaaaaaa ctttagagaa taatttttct caaatggagc
    17761 tttataaaga atttgctaaa aaacataata tcaaaatcat tgatagttat acaaatttca
    17821 tcacttattt ttttgatgaa aaaaatagta cagatttgtc tgaaaaattg cttaaaaagg
    17881 gtataataat aagaaattta aaaagctatg gtttaaatgc tatacgcatt actataggaa
    17941 catcttatga aaatgaaaaa ttttttacag aatttgataa gattttaaga tagataaatc
    18001 aaataaaaat atgtaaaatt cgctaaacta agggatgaga attaatggat tttaaaaata
    18061 tgcttcatca aattgggcaa ctttatcaaa atttaactcg caagcagcgt atagtgattg
    18121 ctgcatctat tatagttgtg gttgggtttt tggttttttt agctttattt cgtggaagtg
    18181 gtagtaatgc aaataatgga tatgcagttt taattgaaaa tgtaagccca agttcttctg
    18241 ctgcaattgt agctaaactt gaacaaaata atattcccta taaattagaa agtgaaaata
    18301 aaattttagt tccacaagat caggtttatc gtcaaagaat gtttattgca agcgaaggtc
    18361 ttataaaaga tagtcgcgtg ggttttgaag cttttgatac tcaagctttt ggagctacaa
    18421 atgaagagca aaaggtaaaa taccaaagag ccatagaagg tgaacttgca agaactattg
    18481 agactttaga acctattcgt agtgctgttg tacatatagc atttcctaaa gatagtgttt
    18541 ttaccgaaag gcaaattccg cctacagctt cagttgttgt taatgttcgc gaaggtttaa
    18601 agcttactag aaaacaaatt gatggtataa aaaatattgt ttcagcggca gttccaaaac
    18661 ttactaaaga aaatgttaag attagtgatc aaagtggtgt gcctttagat gagcaagaag
    18721 catatgaaga tgacttggtt cgtgcgcaaa ttaaatttaa aagtgatcaa gaaaaagctt
    18781 tagaagataa gattatagaa aatttagctc cttttgcagg tggcatggat aaagtaaaag
    18841 tgagtgtaaa tatagatttt gatttttcca agcaagaatc tcaaagtgaa atttatgatc
    18901 caaatcctat agtgcgtagt gagcaaactt taaacgagga aagaacaggt agaaaagatc
    18961 cagaaattca gggtgttcca ggtgctgttt ctaatatagg tcctgttgaa ggacttgaca
    19021 ataagggtca aattgacact tataaaaaaa atcaagttac tacaaataat gaactttcta
    19081 aaactatcac aaataccaaa aaacaatttg caacagtttt acgcacttca gcagctgtta
    19141 ctatagatgg aaaatatcaa gatgtggttg atgaaaatgg ggatgtgaaa agcgaatatg
    19201 tcccattgac taaagaagag cttgcaagtg ttgagagtat agttaaaaat actattaatt
    19261 ttagcgctac tagaggtgat agtgttgtgg tgcaaaattt accatttcat cgtgagtcga
    19321 ttagagttga gagtaaagtt aaaacttttt acaatcgttt tgttgagcca tttattccgc
    19381 cggttaaata ctttattgca gcgattttac tttttatttt ttacaaaaaa gttattgctc
    19441 catttactca aaaaatgctt gaagatgtcg cagcacaaga ggaaatgcag caaggtccaa
    19501 atgctgtttt agatgatgct gaagatgctt tagagaaatt taatgcagca aggaaaaaag
    19561 ttgaagaaca acttggtttt ggggataact tcaatgaaga ttctatccag tatgaggttt
    19621 tgcttgaaaa attgcgtggt ttggtaagtg ataaaggtga ggaaattgca gcacttttgc
    19681 aaaacttaat tcaaaatgat agcgaatttg gcgaaaagga tatgtgatga taaagctaag
    19741 tgaagaacaa aaaatggtct atgatgattt atcgatgcct gagaaggtag cgatatttct
    19801 tatacaactt ggcgaagatg caaccacttc tgtgttttca catatggaaa ttgatgtaat
    19861 tacagaaatt tcacgttata ttgctatggc taaaaatgtt gatagatctg tagctactgc
    19921 agttttagaa gaattttaca ctctgcttca atcaaatcaa tatattaaaa gtggtggttt
    19981 agaatatgct aaagaaatac tttttcgtac ttttggacca gagattgcaa ataaaattct
    20041 tgaaaaactc actaaaagta tggagaataa tcaaaatttt gcttatttgg cgcaaattaa
    20101 accacagcaa cttgcagact ttattaccaa agagcaccca caaaccatcg ctcttatttt
    20161 ggcacacatg gattctattc atgcggcaga aactttagag tattttagcg atgaattaag
    20221 ggctgaggtg gttataagaa tggcaaatct tggcgatatt tctccaagta ttattaaaag
    20281 agtttctgca gtgctagaaa gcaagcttga aagtcttacc tcttataagg ttgaagtggg
    20341 cggcccaaga gcagtagcag aagtgcttaa tcgtttgggt caaaaagcaa gcaaatcaac
    20401 cattacttat attgaacaaa gtgatgaacg cttagcagag actattaaag agcttatgtt
    20461 tactttcgat gatatacaaa aacttagcac tcaggctata agagaaattt taaaagtagc
    20521 cgataagcgt gatttaatga taggtttaaa aggtgcaagt gaagagttaa agcaaaaatt
    20581 cttagccaat atgtctacgc gtgcaagcga agcttttctt gaagaaatgg gttttttggg
    20641 tgctgtgcgt gttaaagatg ttgaagatgc acaaagaaaa gttgttgaag tggtgcaaaa
    20701 acttgcagaa caaggtcttg ttcaaacagg cgatgcggat gaaatgatag agtaggtgag
    20761 agatggttaa tcgtagcaat gtaatttctg gtggggcttc tgatcagcat gttgttgaag
    20821 gatatcgttt taaagttatt tcagaatttg ataatcatac aggtgaaaaa aaacatactc
    20881 aaactccaga tgaagaaaat actaatatat ctttaaatga cgaaaaacca gtcgaagaaa
    20941 atcaagtcat tgcctctaca caagctgtta tggaaactca aattccaaca tttcaaccaa
    21001 gctttgttga agatttactt aaaaaaacag atgaaatgtc aagcaatatt attaaacttc
    21061 aaatgcaaat agaaagccaa gagaatgaat ttaataaccg cttaaattca gaacttgaaa
    21121 atgctaaaga aaaatttacc aaagagggtt atgagaaagc aaaagaagaa tttcaaaagg
    21181 aattgagtga ttttaaagat aagtatttaa aaagtatagc caaacttgat aatgcttgcg
    21241 aaaatcttga aaatttcata gaaaaaaatg agaaagaatt agcagatact gctatagata
    21301 tcgctaaaga agtaatctta aaagaacttg aactaaattc aagtaagata gcttatgctt
    21361 tggctaaaga tttaatcggc gagcttaagg gtgctagtgc aattgagctt aaggttaatg
    21421 cagaggatta tgagtattta aaagagcaat ttgatcagaa tgctcatatt aaaataagtc
    21481 ttgatgatgc aattagcaaa ggaagtgttg ttattataag tgacgcaggc aatatagaat
    21541 ccaatcttaa ctctcgtcta actaaaatta aaaaaatggt gaataatgag taaaaaattt
    21601 gcccatactc aagaagagtt agaaaagcta agtttaaaag aattagaaaa tttagcagca
    21661 tctatgcgtg aaaaaatcat acaagttgtg agtaaaaatg gtgggcattt aagttcaaat
    21721 ttgggtgctg tagaacttag tatagcaatg catttggttt ttgatgcaaa aaaagatcct
    21781 tttatttttg atgtgtcgca tcagtcttat acacacaagc ttttaagcgg aaaagaagaa
    21841 atatttgata ctttaagaca aatcaatggt ttaagtggtt atacaaaacc tagcgagggg
    21901 gattattttg tagcagggca ttctagcacc tctatttctt tggcagtagg tgcttgtaag
    21961 gccattgctt taaaaggtga aaagcgtatt cctgttgctt tgattggaga tggtgcttta
    22021 agtgcgggta tggcctatga ggctttaaat gaattgggtg attctaaatt tccttgcgta
    22081 atacttttaa atgataatga aatgagtatt tcaaaaccaa ttggagcaat ttcaaagtat
    22141 ctttctcagg ctatggcaac gcagttttat caaagtttta aaaagcgtat tgctaaaatg
    22201 ttggatatat tgcctgatag tgctacttat atggccaagc gttttgaaga gagttttaaa
    22261 cttattactc ctgggctttt gtttgaagaa ttagggcttg aatatatagg gcctattgat
    22321 ggacataatt taggtgaaat tatttctgca ttaaaacaag caaaagctat gcaaaagcct
    22381 tgtgtgatac atactcaaac cataaagggt aaaggctatg ctttagccga aggaaaacat
    22441 gctaaatggc acggggtggg agcttttgat atagatagtg gagagagtgt taaaaaaagt
    22501 gatactaaaa aatctgctac tgaaattttt tctaagaatt tgcttgattt agcctcaaaa
    22561 tatgaaaata ttgttggggt tacggcggct atgccaagtg gaacaggtct tgataagctt
    22621 atagaaaaat atccaaaccg tttttgggat gtggctattg cagaacagca tgcagtaact
    22681 tctatggccg ctatggcaaa agaaggattt aaacctttta ttgcaatata tagcactttt
    22741 ttgcagcgtg cttatgatca agtgatccat gattgtgcga ttatgaattt aaatgtggtt
    22801 tttgctatgg atagggcagg gatagtaggc gaagatgggg aaacgcatca aggtgttttt
    22861 gatcttagtt ttttagctcc tttgccaaat ttcactcttt tagctccaag agatgaacaa
    22921 atgatgcaaa atataatgga gtatgcttat ttacatcaag gacctattgc ttttcgttat
    22981 cctagaggga gttttatttt ggataaagaa tttaatcctt gtgagataaa acttggtaag
    23041 gcgcaatggc ttgtaaaaaa tagtagtgaa attgcttttt taggttatgg acaaggtgtg
    23101 gcaaaagcgt ggcaagtctt aagagccttg caagaaatga ataataatgc taatttgatt
    23161 gatttaattt ttgctaaacc tttagatgaa gagcttttgt gtgagcttgc taaaaaaagt
    23221 aaaatttggt ttatttttag tgaaaatgtt aaaattggcg gtatagaaag tttaattaat
    23281 agttttttac aaaaatatga tttgcatgta aaagttgtta gctttgaata tgaagacaaa
    23341 tttattgaac atggaaaaac aagtgaggtg gaaaaaaatc tagaaaaaga tgt
//
LOCUS       DBBXPZ010000021        22737 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.021, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000021 DBBXPZ010000000
VERSION     DBBXPZ010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22737
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.021"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            132..1538
                     /gene="aspA"
                     /locus_tag="ACJFD7_000650"
     CDS             132..1538
                     /gene="aspA"
                     /locus_tag="ACJFD7_000650"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008797 - aspartate ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HGG0859490.1"
                     /translation="MGTRKEHDFIGELEISDEVYYGVQTFRAVENFDISHDRLKDFPR
                     FVRALARVKKAAAMANHELGLLDKNIQDAIIKACDKILEGGYYDQFVVDMIQGGAGTS
                     TNMNANEVIANIGLELMGHKKGEYQYLHPNDHVNLSQSTNDAYPTALHLALHDYLSDL
                     AKAMEHLKKAYERKAEEFKDVLKMGRTQLQDAVPMTLGREFKTFAVMIGEDIQRVLEA
                     RKLILEINLGGTAIGTGINSHPDYPKVVERKIREVTGFEYTVAEDLIEATQDTGAYVQ
                     ISGVLKRVATKLSKVCNDLRLLSSGPKCGLNEINLPKMQPGSSIMPGKVNPVIPEVVN
                     QVCYFVIGADVTVTFACEGGQLQLNVFEPVVAYSLFNSVVMLEKAMYTLADKCIDGIT
                     ANEKICSDFVYNSVGIVTALNPYIGYENSASIAKEAMNTGKRVADIALERGLLSKEQI
                     DEILTPSNMLNPHMEAKK"
     gene            1555..2892
                     /locus_tag="ACJFD7_000651"
     CDS             1555..2892
                     /locus_tag="ACJFD7_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015556 - C4-dicarboxylate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015740 - C4-dicarboxylate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HGG0859491.1"
                     /translation="MDIMIILQVIVLLGAIFIGIRLGGIAIGYAGGLGVVILGLVLGM
                     KPGNIPWDVILIIAAAIAAISAMQQAGGLDYMVRVTEKILRSSPKFINYLAPACGWLL
                     TILAGTGNAVFSLMPVVVDVAKSQNIKPSVPLSLMVVSSQIGITASPVSAAVVYMSGV
                     LEPLGWNYPTLIGIWISTTFVACMLAAFIVSLITPMDLSKDSVYQERLKAGLVKDAGA
                     VLHGEDKPGAKLSVVIFLITVLAVVLYATAISSNIKWIDPVVVPRDAAIMSFLLTAAT
                     LITWLCKVEPGKILDTSVFKSGMTACVCVFGVAWLGNTFVAGHEASVKEVAGDWVKQT
                     PAMLAVAFFFASMLLYSQAATAKAIVPVIITALGISAANPHDSYMLVACFAAVSALFV
                     LPTYPTLLGAVQMDDTGTTRIGKFIFNHSFFIPGVLAIAIAVVLGFVLAPMFI"
     gene            2998..4359
                     /locus_tag="ACJFD7_000652"
     CDS             2998..4359
                     /locus_tag="ACJFD7_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859492.1"
                     /translation="MKIKVGLIFSGIVCLFLTACVNQVKQNTTFENTLTQKYCGDDFF
                     NQNLEKIKKNDDVIYTGLNAGLIARNCGDFNKSNVFFDAVEESYKYDVDLENVSPKAA
                     KFIGTTLLNDNIVDYDGSLYERIMVNIYKALNYMEEDDYENARVEFNRALMRQDKAKE
                     YFAKEIEKNRADLDKAKEDKNYDKNMNENSKVIEEQYDNLFKEFDTTKNFINPYATYL
                     ASIFFFMDKDYRKAADLFREVAIIYPKNKTIKKEAKIFKEYATKIKVKKAKKYVFVVY
                     ENGFGVVKDEFALTLPFIVDKKIISTNIALQTLKKREASFANLNINGQNTNDFVDLDN
                     IVATEFKINMPAMIAKALAQTIIKTTLNVAVANNDSTGGWLSLATAVATAATNKADVR
                     SWRGLPKSIAIATIENDGNLEIKDPQGNILFQKSLDKNKNVLVIVRSFAPYLAASVAI
                     MKK"
     gene            4369..4737
                     /locus_tag="ACJFD7_000653"
     CDS             4369..4737
                     /locus_tag="ACJFD7_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HGG0859493.1"
                     /translation="MKKIILFILMFLLSACAPSYQINSNQNTVILGSNLPKSLVKQFQ
                     KRINSNGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVIL
                     RKFASDIRAKDFRLEIKVKN"
     gene            4761..5384
                     /gene="lpoB"
                     /locus_tag="ACJFD7_000654"
     CDS             4761..5384
                     /gene="lpoB"
                     /locus_tag="ACJFD7_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HGG0859494.1"
                     /translation="MKKTKILGTALIGALLFSGCAQTAYTDGKASQVKKGDALTLGLD
                     RQDFESAAETMINSMLSDPAFANIKPGTRKVIAIGRVVNDTPQRIDTEKLTAKITSAL
                     RKSGKFVLTSAVAAGGALDSMSEDVRELRDNDEFNQKTIAKKGTLVSPDFSLAGKIRQ
                     DNVKLSNGKTQVEYFFLLRLTDLTSGLVYWEDEQTIDKTGSSKSVTW"
     gene            5467..6804
                     /locus_tag="ACJFD7_000655"
     CDS             5467..6804
                     /locus_tag="ACJFD7_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6844 domain-containing protein"
                     /protein_id="HGG0859495.1"
                     /translation="MKKILFIGSLVMASLLYAQGSQPVEITQQDINIQNEMSDASTKD
                     ITPKSIEDFFEEFADNFGIEYGITKDGKTFYTGKGAVAVNDTDPQFAQALQNAYQKAM
                     LNLQSEFIRDAFGRIATSRIQNYEADNSTNAKEFDELPKGDKVDQILNKLTQLAGAQL
                     DKALKDLGIDTNSLSEDRKKTLLKQEFLNKTMTNAIGSMSGLVPVQTIVTQRRGEYDV
                     GVIAVISNKTRQLAKDMALARQSAIKGKGKAISEYLPKDTKGFLNEYGIRLVYDENGA
                     PIILSYGNWGYVADPSNAKKTNILEDRAKETALTMADAAIIEFINTNLSLKDERTTGD
                     TYEEIIKQSINVNDSSTQEQTQNITNIIDKVNSKIKASASGKIRGIRTLKKWSYTSEN
                     GIEHVGAVRFYSYENLANTNEALNSKSNATKNEAKKSSSIQRSSNVVNSMDDF"
     gene            6814..8016
                     /locus_tag="ACJFD7_000656"
     CDS             6814..8016
                     /locus_tag="ACJFD7_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsgG/HfaB family protein"
                     /protein_id="HGG0859496.1"
                     /translation="MKIIKILFLGLFLSLSLNAKVITTTSTKSSTGEGTGLTREDAIN
                     NAIIEAIGKMSGVSINSLKKSNTSVSTDNSGSNIQDNYSEQISKATKGRADTYEINSV
                     EQDANGKYAANVTIFKTTTTKKYQAPGLSADNRRSITVFDSTPDAAKRGIGSALQQKI
                     ISDLLQSRKFNVLDRDSSGYYEMEKALIKSGDAASDEVYKLKNVLATDYILLFSISGL
                     EGKQKTSNLTGKSKTEIEVIVDYRVLLFATRQIKFSNTLSMKVNLKDNSLSANEAALK
                     QIANRIAGDILNAIYPLKVASVENNEVVFSQSLNQGDVYECFALGKVIKDTYTKENTG
                     RAESKTGSIEITRTSPKLSYAKITEGSVKVGDICRPLIGSNSGNGYTIGRDANYQTQE
                     GGGVNLGF"
     gene            8175..8483
                     /gene="rplU"
                     /locus_tag="ACJFD7_000657"
     CDS             8175..8483
                     /gene="rplU"
                     /locus_tag="ACJFD7_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HGG0859497.1"
                     /translation="MYAIIKHSGKQYKVSVGDELKLDHFEAESKASIEVSEVLAINDK
                     ELKVGAPFVAGAKVVLEVINHGKDKKVVIYKKRRRKDSKLKRGFRRQFTRVVVKDIKA
                     "
     gene            8494..8748
                     /gene="rpmA"
                     /locus_tag="ACJFD7_000658"
     CDS             8494..8748
                     /gene="rpmA"
                     /locus_tag="ACJFD7_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HGG0859498.1"
                     /translation="MAHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTA
                     THAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYPA"
     gene            8855..9892
                     /gene="obgE"
                     /locus_tag="ACJFD7_000659"
     CDS             8855..9892
                     /gene="obgE"
                     /locus_tag="ACJFD7_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HGG0859499.1"
                     /translation="MFIDSVKITLASGDGGKGAVSFRREKHVPLGGPDGGDGGNGGDI
                     IFVCDNNTHTLVNFKGKRELRAQNGAGGMGRNKNGKKGENLELIVPEGTQVIDAQTNE
                     ILLDLTKEGQRELFLKGGKGGLGNTHFKHATNQRPDYAQPGIKGESRLVRLELKLIAD
                     VGLVGFPNVGKSTLISVVSNAKPEIANYEFTTLTPKLGLVDVDEYNSFVMADIPGIIE
                     GASGGKGLGLAFLKHIERTSFLLFVLDPMREMPLKEQFIVLRKELEKFSNELFGRKFG
                     IMISKSDSINLGEEFAEQIALNINELENYLKEINNPQSFLIKVSSLEKTGLKELKFML
                     LEEIKTLRNNK"
     gene            10015..10770
                     /gene="proB"
                     /locus_tag="ACJFD7_000660"
     CDS             10015..10770
                     /gene="proB"
                     /locus_tag="ACJFD7_000660"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004349 - glutamate 5-kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HGG0859500.1"
                     /translation="MKRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVT
                     SAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFD
                     SRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVI
                     LSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLL
                     EHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE"
     gene            10844..11761
                     /gene="fmt"
                     /locus_tag="ACJFD7_000661"
     CDS             10844..11761
                     /gene="fmt"
                     /locus_tag="ACJFD7_000661"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0071951 - conversion of methionyl-tRNA to
                     N-formyl-methionyl-tRNA [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HGG0859501.1"
                     /translation="MKKIIFMGTPSYATCILKALVENENFKLVALFTQPDKAVGRKQI
                     LTPSDTKAFLSQNYPSIPIFTPSSLKDKNIIREIRDLNPDFIVVAAYGKILPKVILDL
                     APCVNLHASLLPKYRGASPIQSAILNKDEKSGVCTMLMEEGLDTGAILESLECDIKDK
                     NSSEVFELLANLAAKLILSTLLNFDKITPKKQEESLATLCRKIKKEDGLINLQNAREL
                     YQKYLAFTPWPGVFLENGLKFLELELVDELKQNAKMGEILELEKESFLLACKQGVLRI
                     KKLQESGKKALDGRTYLNGKRLKSEDSLC"
     gene            11724..12377
                     /locus_tag="ACJFD7_000662"
     CDS             11724..12377
                     /locus_tag="ACJFD7_000662"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004077 - biotin-[acetyl-CoA-carboxylase]
                     ligase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HGG0859502.1"
                     /translation="MEKGLKVKIVCVESIDSTHLFLCEQIRNGKIDENFAIYALEQTN
                     GVGSRENSWQSSKGNLHLSFCIKEEDLPKDLPLASVSIYFAYLLKEVLQEKGSKIWLK
                     WPNDLYLDDKKAGGVISAKISNFIIGGMGLNLKFAPQNTALCDIEISLKDLVSEFLQK
                     VEKKILWKNIFSKYMLEFEKSRKFSVHHEGKVFSLENSFLYEDGSILLGDKRVYSLR"
     gene            12374..13159
                     /locus_tag="ACJFD7_000663"
     CDS             12374..13159
                     /locus_tag="ACJFD7_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004278029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HGG0859503.1"
                     /translation="MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVDPQAN
                     ATTGLGFNRNNYEYNIYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGE
                     NNEKKMLLKNQIQEVIDEYDFIIIDSPPALGSITINAFAASDSVIIPIQCEFYALEGV
                     AMVLNTIKIIKKTINSKLRVRGFLPTMYSSQNNLSKDVVDDLKQNFKKQLFTINGNED
                     DFIVIPRNVKLAESPSFGKPIILYDIKSPGSVAYQNLAYSILG"
     gene            13165..14001
                     /locus_tag="ACJFD7_000664"
     CDS             13165..14001
                     /locus_tag="ACJFD7_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HGG0859504.1"
                     /translation="MGLNKDRGLSSLISDMDTVYSKELGFDKNQSTMIEIDQISPNPF
                     QPRKNFDQEALDELANSIKEFGLIQPIIVFKKNNKFILIAGERRLRAVKALGKKEILA
                     FIANIDENKLRELALIENIQRENLNPIELANSYKDLMQVHKITQENLAELIHKSRTQI
                     TNTLRLLNLDIRTQELIASGKISQGHAKVLVGLDQKDEKMLVDSIIGQKLNVRDTEKI
                     VKKIKNNESLPNQEFEDEIKKLKQILNRFGFDCKNKNNDFVIHLENIDKIKKLIKMLE
                     KF"
     gene            14062..14487
                     /locus_tag="ACJFD7_000665"
     CDS             14062..14487
                     /locus_tag="ACJFD7_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FoF1 ATP synthase subunit B'"
                     /protein_id="HGG0859505.1"
                     /translation="MFEDMHPSIMLATIAIFLAMIVILNSMLYKPLLKFMDERNDSIK
                     NDENKVKENSQEVLCVNDELEVIHINTREEIQKIKQSAIAAAKEEAEQILRSKKEELE
                     RKMASFYADLAIQKKELQEHLNIHLPELKQALQNNIKKI"
     gene            14498..15010
                     /locus_tag="ACJFD7_000666"
     CDS             14498..15010
                     /locus_tag="ACJFD7_000666"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HGG0859506.1"
                     /translation="MSKLLFIIFLLPLYAFGASNGSGEYDIIPRTINFLIFVGILYYF
                     VATPFKNFYKNRIVKISSKLDEIQKKLLESKAKKLDTMKKLEEAKASAAAALITAKKE
                     AEILVQNIKKETQDELDLLQKHFEEQKDYEFRKMEKELVSNTLNEIFSDPNMTLKQSE
                     IIELMMKKVS"
     gene            15013..15534
                     /locus_tag="ACJFD7_000667"
     CDS             15013..15534
                     /locus_tag="ACJFD7_000667"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HGG0859507.1"
                     /translation="MENIIARRYAKAIASRADINDFYQNLCILNSAFVLPKFKNIIES
                     NEIKKERKMEFLDSFFDIKNSSFQNFLRLLIENSRLECIPQIVKELERQKAFKENIFV
                     GIVYSKEKLSQENLKDLEVKLNKKFDANIKLNNKISQDDSVKIELEELGYELSFSMKA
                     LQNKLNEYILKII"
     gene            15548..17053
                     /gene="atpA"
                     /locus_tag="ACJFD7_000668"
     CDS             15548..17053
                     /gene="atpA"
                     /locus_tag="ACJFD7_000668"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HGG0859508.1"
                     /translation="MKFKADEISSIIKERIENFDLNLEIEETGKIISVADGVAKVYGL
                     KNIMAGEMVEFENGDKGMALNLEESSVGIVILGKGEGLKEGASVKRLKKLLKVPVGEA
                     LIGRVVNALGEPIDAKGVINANEYRFVEEKAKGIMARKSVHEPLHTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTVAVDTIISQRGQGVICIYVAIGQKQSTVAQVVKRLEEHGAM
                     EYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLI
                     LRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNV
                     ISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGAAQIKATKQVSGTLRLDLAQYREL
                     QAFAQFASDLDEASRKQLERGQRMVELLKQPPYSPLSVEKQVVLIFAGTKGFLDDIAV
                     SRIKEFEDGIYPFIEAKHPDIFEQIRSKKALDSDLEEKLAKAINEFKANHL"
     gene            17062..17946
                     /gene="atpG"
                     /locus_tag="ACJFD7_000669"
     CDS             17062..17946
                     /gene="atpG"
                     /locus_tag="ACJFD7_000669"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit gamma"
                     /protein_id="HGG0859509.1"
                     /translation="MSNLKEIKRKIKSVHNTQKTTNAMKLVSTAKLKKAEEAAKRSKI
                     YAQKIDEILSEISFQINKIVHNEDDVRLSLFHKKEQIKTVDLIFITADKGLCGGFNIK
                     TLKTVSEMLKEYEAKNINIRLRAIGKTGIEYFNFQKIELLEKYFHLSSSPDYEKACEV
                     IHAAVDDFLNGNTDEVILVHNGYKNMITQELKINHLIPVEPKSIEQTHNSLLELEPEG
                     TELLEDLMKTYFEYNMYYALIDSLAAEHSARMQAMDNATNNAKARVKQLNLAYNKARQ
                     ESITTELIEIISGVESMK"
     gene            17972..19369
                     /gene="atpD"
                     /locus_tag="ACJFD7_000670"
     CDS             17972..19369
                     /gene="atpD"
                     /locus_tag="ACJFD7_000670"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HGG0859510.1"
                     /translation="MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLE
                     VAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGE
                     EISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
                     IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGA
                     RNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLA
                     SEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLDATTVLNRAIAEKGI
                     YPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKL
                     VVERARKIEKFLSQPFFVAEVFTGSPGKYISLEDTIAGFKGILEGKYDHLPENAFYMV
                     GNIDEAIAKADKLKG"
     gene            19373..19762
                     /gene="atpC"
                     /locus_tag="ACJFD7_000671"
     CDS             19373..19762
                     /gene="atpC"
                     /locus_tag="ACJFD7_000671"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit epsilon"
                     /protein_id="HGG0859511.1"
                     /translation="MNDLINFEIVTPLGVIYQGEVKSVTLPGSEGEFGVLKGHAALVS
                     SLKSGVIDIEKADLNHELIAIDAGHAKVDEDKICVLAKGAVWVCGSDESEIEKNLAQA
                     KDLIKSMSSDNAALAATFSKLDNARMH"
     gene            19762..20316
                     /locus_tag="ACJFD7_000672"
     CDS             19762..20316
                     /locus_tag="ACJFD7_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HGG0859512.1"
                     /translation="MNFEAIFHFFNSSSIITYIVLLWLSLYFILAFSILFARLTYLAT
                     WRNKEKESLETLLLGEKDLSRTDSILRKCNDTTSNHLEIYKNLASRRASAGLTWLSII
                     ASTSPFIGLFGTVISILETFGGLGTQNSLSLIAPKISEALVATGCGILVAIPAYTFHL
                     IIKRKAFELLSIIDSEIKVISSSK"
     gene            20325..20714
                     /locus_tag="ACJFD7_000673"
     CDS             20325..20714
                     /locus_tag="ACJFD7_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HGG0859513.1"
                     /translation="MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQG
                     SQKNTSAPTVKSLIISINAKKEIFLNQEKYDFISFADNLAQRKAQFNTEDPVFIRADK
                     SLKYDDVISVLRSVKNLGFNKVALQTE"
     gene            20717..21496
                     /locus_tag="ACJFD7_000674"
     CDS             20717..21496
                     /locus_tag="ACJFD7_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB C-terminal domain-containing protein"
                     /protein_id="HGG0859514.1"
                     /translation="MKNYGLSNLNSFLLALAIYVGIVILVFFRLVSEVEPAIQYTDIK
                     DSFVDIELAEPSKQVITQSNTPKEIQKSTEQIDIEKLFAQTTNKTVKTEDIDQKASNF
                     NELFGNIKEIQEEKTTKIQSSTKSGISSAPKPQASELVKQLNDSLLQEESSTQGESTK
                     AQKIGIYDEFLGKVVRIITQRWTQYYPNSEKISVKVKIFIDENGKFGYTSVEKSGNPL
                     YDAKVAEFLESQKGKFITYPPQNKNISITMNLRDEAKVKND"
     gene            21506..22714
                     /gene="tolB"
                     /locus_tag="ACJFD7_000675"
     CDS             21506..22714
                     /gene="tolB"
                     /locus_tag="ACJFD7_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HGG0859515.1"
                     /translation="MKKIVAIFLVFLGSLWAEDPVIDVVNSGVVLPKIIVKDNSNLSD
                     ENLKKSFYNIIVNDLKVSSNFEVVANATETSNYTFEYTLNKNGNTLSLNVKIKAGGSD
                     KSEQTYTLNGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSSKKSQIIMAD
                     YTLTYQKVIVDGGLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSSGG
                     MVVASDVSVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSK
                     VVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNNSAVSTYKDFLVYSSREPNQAGVFNI
                     YLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNANKTFYFPL
                     RVGKIQSIDW"
BASE COUNT         8338 a         2880 c         4204 g         7315 t
ORIGIN      
        1 acttaattta ttgtatttga aagtagtttt cttattaacc aattattaac taaaaatgca
       61 atatcattat tttatgattt aaatcaaaaa tttttgattt taaattaaaa tacttttatg
      121 aaaggttcaa aatgggaaca agaaaagaac atgattttat tggggaatta gaaatctctg
      181 atgaggttta ttatggagtg caaactttta gagctgttga aaattttgat atttctcatg
      241 atagattaaa agattttcct cgctttgtta gagctttggc tagagtaaaa aaagctgcag
      301 ctatggcaaa tcatgaatta ggtcttttgg ataaaaatat ccaagatgcg attattaaag
      361 cgtgcgataa aattttagaa ggcgggtatt atgatcaatt tgtagtagat atgatccaag
      421 gaggtgctgg aacaagtaca aatatgaatg ctaatgaagt tatagcgaac ataggacttg
      481 aacttatggg tcataaaaaa ggtgaatacc aatatcttca tccaaatgat catgttaatt
      541 taagccaaag tactaatgat gcttatccta cggctttaca ccttgccttg catgattatt
      601 taagtgattt ggcaaaagct atggaacatc taaaaaaagc ttatgagaga aaagctgaag
      661 aatttaaaga tgttcttaaa atgggtagaa cccaactgca agatgctgta cctatgactt
      721 taggtcgtga atttaaaact tttgccgtaa tgataggtga agatatacaa agagtattag
      781 aagctagaaa attgatttta gagatcaatt tgggtggaac tgctattgga acgggaatta
      841 attctcatcc tgattatccg aaggttgtag aaagaaaaat aagagaagtg acaggttttg
      901 aatatactgt ggctgaggat ttgatcgagg cgactcaaga tacgggagct tatgtacaaa
      961 tttcaggtgt tttaaaacgt gttgcaacaa aactttctaa agtatgtaat gacttaagac
     1021 ttttaagtag tggtccaaaa tgtggtctta atgagattaa tcttccaaaa atgcaaccag
     1081 gtagttctat catgccaggt aaggtaaatc ctgttattcc tgaagtagtt aatcaagttt
     1141 gttattttgt tattggagca gacgtaactg taacttttgc ttgtgagggt ggacaattgc
     1201 aacttaatgt ttttgaacca gttgtagcat atagcttatt taattctgtt gtaatgctag
     1261 aaaaagcaat gtatacttta gctgataaat gtatagatgg tattaccgca aatgaaaaaa
     1321 tttgttcaga ctttgtctat aattcagtag gtatagtaac agctttaaat ccttatattg
     1381 gttatgaaaa ttcagcttct atagctaaag aggcaatgaa cactggaaaa agagtggctg
     1441 atattgcgct tgaaagaggg cttttaagta aagaacaaat tgatgaaatt ttaactccat
     1501 caaatatgct aaatcctcac atggaagcta aaaaatagca ttttaggatt taatatggat
     1561 ataatgataa ttttgcaagt aatcgtcctt cttggggcga tttttatcgg tattcgccta
     1621 ggcggcattg ctataggtta tgctggagga ttaggtgtag ttatactagg acttgtttta
     1681 ggtatgaaac ctggtaatat tccttgggat gttattttaa ttattgctgc agctattgca
     1741 gcaatttctg ctatgcaaca agcaggtgga cttgattata tggtaagggt gacagaaaaa
     1801 attttaagat caagccctaa atttataaat tatttagctc cagcttgtgg atggttgctt
     1861 acaatcttag caggaacagg aaatgcagta ttttctttaa tgcctgttgt agttgatgtt
     1921 gcaaaatctc aaaacataaa acctagtgtt ccactttcat taatggttgt ttcttcgcaa
     1981 attggaatca ctgcttctcc tgtaagtgca gctgtggttt atatgagcgg agttttagag
     2041 ccacttggat ggaattatcc aactttaatt ggaatttgga ttagcacaac ttttgtagct
     2101 tgtatgcttg cagcttttat agtgagttta atcactccta tggatttgag taaggatagt
     2161 gtttatcaag aacgattaaa agcaggactt gtaaaggatg caggagctgt tttgcatggc
     2221 gaagataaac caggtgctaa actttcagtg gtaattttct tgatcactgt tttggcagtt
     2281 gtactttatg caaccgcaat ttcaagtaat attaaatgga ttgatcctgt tgtggttcca
     2341 agagatgcag ctattatgag ctttttactt actgcagcaa ctttgatcac ttggctttgt
     2401 aaagttgaac caggtaaaat tcttgacact agtgtattta aaagcggtat gactgcttgt
     2461 gtttgtgttt ttggtgtagc atggcttgga aatacttttg ttgcaggaca cgaagcttct
     2521 gtcaaagaag tagcaggcga ctgggttaaa caaacccctg ctatgttagc agttgcattt
     2581 ttctttgcaa gtatgctttt atattcccaa gcagcaaccg caaaggccat tgtacctgta
     2641 attatcactg ctttaggaat ttcagcagca aatccgcatg attcttatat gcttgtagct
     2701 tgttttgcag cagtttcggc actttttgtg cttccaactt atccaacctt gcttggtgca
     2761 gtgcaaatgg atgatacagg aacgactaga attggtaaat ttatatttaa tcactcattc
     2821 tttataccag gggttttagc tattgcaatt gctgtagtat taggctttgt attagctcct
     2881 atgtttattt aaatcaaacc ctaggttttt ctcctagggt taaatttttt tcattagttt
     2941 ttaagtatat actacgctat aatattcatt ttcaattttc tttaagaaag gaatttaatg
     3001 aagataaaag ttgggttgat tttttcaggt attgtttgcc tttttttaac agcttgtgtt
     3061 aatcaggtta aacaaaatac aacatttgaa aatactttaa cacaaaaata ttgtggtgat
     3121 gattttttca atcaaaattt agaaaaaatt aaaaaaaatg atgatgtcat ttatacagga
     3181 ttaaatgcag gtttgattgc tagaaattgt ggtgatttta ataaaagtaa tgtatttttt
     3241 gatgctgtag aagaatctta taaatatgat gtggatttag aaaatgtaag ccctaaagca
     3301 gctaaattta ttggtacaac cttgcttaat gataatatag tagattatga tggttcttta
     3361 tatgaaagaa ttatggttaa tatatataaa gctctaaact atatggaaga agatgattat
     3421 gaaaatgcaa gagttgagtt taatcgtgct ttaatgcgtc aagataaggc aaaagaatat
     3481 tttgctaaag aaattgaaaa aaatcgtgct gatttagata aggcaaaaga agataaaaat
     3541 tatgataaaa atatgaatga aaattcaaaa gttatagaag agcaatatga caacttattt
     3601 aaagaatttg atacaacaaa aaatttcata aatccttatg cgacttatct tgcttcaata
     3661 tttttcttta tggataaaga ttatagaaaa gctgcagatt tatttagaga agtagctatt
     3721 atttatccaa aaaacaaaac tatcaaaaaa gaggctaaaa tttttaaaga atatgccaca
     3781 aaaataaaag tcaaaaaagc taaaaaatat gtttttgtag tttatgaaaa tggatttggt
     3841 gtagttaagg atgaatttgc tttaacctta ccttttatag tggataaaaa aattattagc
     3901 acaaatattg ctttacaaac cttgaaaaaa agggaagctt cttttgcaaa tttaaatata
     3961 aatggtcaaa atacaaatga ttttgtagat ttagacaata ttgtcgctac tgaatttaaa
     4021 ataaatatgc ctgcaatgat tgctaaagcc ttagctcaaa ctataattaa aaccacttta
     4081 aatgtagctg ttgcaaataa tgactctaca ggtggatggc taagtcttgc aacagcagta
     4141 gcaactgctg caaccaataa agctgatgtg cgttcttgga gaggtttacc aaaaagtatt
     4201 gctatagcaa caatagaaaa cgacggaaat ttagaaatca aagatccaca aggcaatatt
     4261 ttgtttcaaa aatcattaga taaaaataaa aatgttcttg tgatagtgcg ttcttttgct
     4321 ccgtatttag ccgcaagtgt tgctatcatg aaaaaataag gctaaaagat gaaaaaaatt
     4381 attttattta ttttaatgtt tttacttagt gcttgtgcac caagttatca aataaattca
     4441 aatcaaaata ctgtaatttt aggttcaaat ttaccaaaaa gtttagtaaa acaatttcaa
     4501 aagcgtataa atagcaatgg ttatttagaa tttgaagtga ttttacgcag tacttttgct
     4561 aaagatgtaa tttataaagt agattggtta gataaagatg gttttgtgtt aagagatgtt
     4621 ttaaatgagg actatcaagc ccttagaatt ccagcaggac aagaggtgat tcttcgtaaa
     4681 tttgcatctg atataagagc gaaggatttt aggctagaaa ttaaagtaaa aaattaatct
     4741 cattttagga aggataaatc atgaaaaaaa caaaaatttt aggaacagct cttattggag
     4801 ctttgctttt tagtggttgt gcgcaaacag cttatacaga tggaaaggca agtcaggtga
     4861 aaaaaggcga tgctttaacc ttgggtcttg atagacaaga ttttgaaagt gcagctgaaa
     4921 ctatgataaa tagtatgtta agcgatcctg cttttgcaaa tattaaacca ggtacaagaa
     4981 aggttattgc tattggtagg gttgtgaatg ataccccaca aagaatcgat actgaaaaac
     5041 tcaccgcaaa aatcacttct gcattaagaa aatcaggtaa atttgttcta acttcagcag
     5101 ttgctgcagg tggagcactt gatagcatga gtgaagatgt aagagaatta agagataatg
     5161 atgagtttaa tcaaaaaacc atagcaaaaa aagggacatt ggtatcgcct gatttttctc
     5221 ttgcgggtaa aattagacaa gataatgtaa aacttagcaa tggtaaaact caagtagaat
     5281 actttttctt attaagactt actgatttaa catcaggttt agtttattgg gaagatgaac
     5341 aaactattga taaaaccggt tctagtaaat cagttacttg gtaaaataaa aattaattta
     5401 tgaataaaat tttttagctc aagtgtttag cttgggcttt ttttatgatt tttaaaagga
     5461 tacgaaatga aaaaaatatt atttatcggc tctttagtta tggcaagttt actttatgca
     5521 caaggttccc agcctgtaga aattacacaa caagatataa atattcaaaa tgaaatgtct
     5581 gacgcaagta ctaaggatat taccccaaaa tcaattgaag atttttttga agaatttgcg
     5641 gataatttcg gtatagaata tggtataacc aaagatggaa aaacttttta tacaggaaaa
     5701 ggtgctgttg ctgtaaatga tactgatcca caatttgcac aagctttaca aaatgcttat
     5761 caaaaagcaa tgttaaattt gcaaagcgaa tttataagag atgcttttgg aagaattgct
     5821 acaagcagga ttcaaaatta tgaagcagat aattctacga atgctaagga atttgatgaa
     5881 ttgccaaaag gtgataaggt tgatcaaatt ttaaataaac ttacacaatt agctggtgct
     5941 cagcttgata aggcattaaa agatttaggt atagatacaa attctttaag cgaagacaga
     6001 aaaaagactt tattaaagca agaatttctt aataaaacta tgacaaatgc cataggttct
     6061 atgagtggac ttgttcctgt gcaaactata gttacacaaa gaagaggtga gtatgatgta
     6121 ggtgttattg ctgttatttc caataaaact cgccaattag caaaagatat ggcactagca
     6181 agacagagtg ctattaaggg taaaggcaag gcaataagtg agtatctgcc aaaagataca
     6241 aaaggctttt taaatgaata tggaattcgc ttagtttatg atgaaaatgg tgcacctatt
     6301 attttaagtt atggaaactg gggttatgta gcagatccta gcaatgctaa aaaaacaaat
     6361 attttagaag atagagccaa agaaacagca cttactatgg ctgatgctgc tattatagag
     6421 tttattaata caaatttaag tcttaaagat gaaagaacaa ctggtgatac ttacgaggaa
     6481 atcatcaaac aaagtattaa tgttaatgat agttccactc aagaacaaac tcaaaacata
     6541 acaaatatta ttgacaaagt aaatagtaaa ataaaagcaa gcgcaagcgg taaaattcgt
     6601 ggtattcgta ctcttaaaaa atggagctat acaagtgaaa atggtattga acatgtagga
     6661 gctgtgagat tttattctta tgaaaattta gctaacacaa atgaggcttt aaattcaaag
     6721 tcaaatgcaa caaaaaatga agctaaaaaa tcttctagca tacaaagaag ttctaatgtt
     6781 gtaaatagta tggatgattt ttaaaggtaa aagatgaaaa taattaaaat tcttttttta
     6841 ggcttatttt taagcctaag tcttaatgct aaagttataa ccacaacttc aacaaaatca
     6901 agcacaggtg aaggcacagg cttgactagg gaagatgcga taaacaatgc cattatagag
     6961 gctataggaa aaatgagcgg agtaagcatc aattctctta agaaatctaa tactagcgtt
     7021 tcaactgata attcaggttc aaatatacaa gataattaca gcgagcaaat ttcaaaagcc
     7081 accaaaggta gagctgatac ttatgaaatc aatagtgttg aacaagatgc aaatggtaaa
     7141 tatgcagcta atgtaacgat ttttaaaacc acaacaacaa aaaagtatca agctccaggt
     7201 ttaagtgcag ataatagaag aagtattact gtttttgatt ctactccaga tgctgcaaaa
     7261 agaggtatag gctcagcttt gcaacaaaaa atcatttctg atttattgca aagtcgtaaa
     7321 tttaatgttt tagaccgtga ttctagtggc tattatgaaa tggaaaaagc tttaatcaaa
     7381 agtggcgacg cagctagcga tgaagtttat aaacttaaaa atgtgttagc aacagattat
     7441 attttattgt tttctatttc aggacttgaa ggtaaacaaa aaacaagcaa tttaacagga
     7501 aaaagcaaaa ctgaaattga agttatcgta gattatcgtg tgcttttatt tgctacaaga
     7561 caaattaaat tttctaatac tttaagtatg aaagtcaatc ttaaagacaa tagtcttagt
     7621 gccaatgaag ctgcgctcaa acaaattgca aatcgtattg caggagatat tttaaatgca
     7681 atttatcctt tgaaagttgc aagcgttgaa aacaatgaag tagtattttc tcaaagctta
     7741 aatcaaggtg atgtttatga atgttttgct cttgggaagg ttataaaaga tacttataca
     7801 aaagaaaata caggaagagc agaaagcaaa acaggaagta ttgaaatcac tcgcacaagc
     7861 cctaaacttt cttatgcaaa aatcacagaa ggtagtgtaa aagtgggcga tatttgtaga
     7921 cctttaattg gtagcaatag tggaaatggc tacactatag gtcgtgatgc aaattatcaa
     7981 acccaagaag gtggcggagt aaatctaggc ttttaaattt ttagagtttg atttttctca
     8041 aactctaaat cctttcttaa attcatcaaa aattaaagaa aaattttgta aaatcgaaat
     8101 tttattaaac cactaaagct tttaaatccg ttattgcggt gctttatggt actaccaatt
     8161 tataaggaaa agcaatgtat gctattatca aacacagcgg aaagcaatac aaagtaagtg
     8221 ttggcgatga gctaaaacta gatcactttg aagctgaaag caaagcaagt attgaagtaa
     8281 gcgaagttct tgctatcaat gataaagaat taaaggtagg tgcgcctttc gtagcaggtg
     8341 caaaagttgt tttggaagtg atcaatcacg gaaaagataa aaaagttgtg atttacaaaa
     8401 aaagacgcag aaaagattct aaactcaaac gcggttttag aagacaattt actcgcgttg
     8461 tagtaaaaga tatcaaagct taaggagtaa agaatggcac acaagaaagg tcaaggttca
     8521 actcaaaata accgcgattc tataggtcgt cgtttaggtg ttaaaaaatt tggtggcgag
     8581 tttgttagag ctggaaatat catcatccgc caaagaggaa ctgcaactca tgcaggtaac
     8641 aatgtaggta tgggaaaaga tcatactatc tttgctttga ttgatggttt tgtaaaattc
     8701 gaaagaaaag acaaagatag aaaaaaagtt tctgtatatc ctgcataagt ttttaggacg
     8761 ctttttagcg tcttgaaaac tttaaattta taaatttaac ttcttttatt tactcaaatt
     8821 tagctttata aatttaaagt caaaggcaat ttaaatgttt attgatagtg ttaaaattac
     8881 tttagcttca ggcgatggtg gtaaaggtgc tgtaagtttt cgtcgtgaaa aacatgttcc
     8941 acttggtggc cctgatgggg gagatggtgg aaatggtggt gatattattt tcgtatgtga
     9001 taataatacc cacactcttg taaatttcaa aggcaaaaga gaattacgcg cacaaaatgg
     9061 tgctggtgga atgggacgca ataaaaatgg caaaaaaggt gaaaatttag aacttatagt
     9121 gcctgaagga acgcaagtta tcgatgcaca aactaatgaa attttactcg atcttaccaa
     9181 agaaggacaa agagagcttt ttttaaaagg tggaaaaggg ggacttggca acactcattt
     9241 taaacacgcc accaatcaac gtcctgatta cgcacaacct ggtataaaag gagaaagtcg
     9301 cttagtcaga cttgagctta aacttatcgc cgatgtagga cttgtaggtt ttccaaatgt
     9361 aggaaaatct acccttataa gcgttgtttc aaatgcaaaa cctgaaattg caaattatga
     9421 atttactacc cttactccaa aacttggact tgtggatgta gatgagtata attcctttgt
     9481 aatggctgat attccaggga ttatcgaagg agcaagtggg ggcaaaggct taggacttgc
     9541 ttttttaaag cacatagaaa gaacgagctt tttgcttttt gtactagatc ctatgagaga
     9601 aatgccttta aaagaacaat ttatagtact aagaaaagaa cttgaaaaat tttccaatga
     9661 actttttggg cgtaaatttg gcatcatgat ttcaaaaagt gatagtatta atttaggaga
     9721 agaatttgcc gagcaaattg ctttaaacat taatgagtta gaaaattatc tcaaagaaat
     9781 aaataaccca caaagctttt taatcaaagt ctcaagcctt gaaaaaacag gacttaaaga
     9841 acttaaattc atgcttttag aagaaattaa aactttaaga aataacaaat aaaaatttta
     9901 acaatctagg aagtgtttta tattaaaaat ttcaaacact ccctattttt tcaaaaaata
     9961 actagtttat atgaaatttt ggctaaaatt ataaaaattt ttcaaggaat aagcatgaaa
    10021 agaatagttg ttaaagtggg ttctcatgtg attagcgaag aaaacacttt aagttttgag
    10081 cgtcttaaaa atttagtcgc atttttagct aaactcatgg aaaaatatga agtaatttta
    10141 gtaacctcgg cggctatttc ggcaggacac accaaactag atatcgatag aaaaaacctt
    10201 attaataaac aagttttagc cgctattgga caaccttttt taatcagtgt ttataacgag
    10261 cttttagcca aatttaacaa actaggcgga caaattttac ttacaggcaa ggattttgac
    10321 tctagaaaag ctaccaaaca cgcaaaaaat gctatcgata tgatgataaa tttaggaatt
    10381 ttgcctatta tcaatgaaaa tgacgctaca gctatagaag aaattgtctt tggtgataat
    10441 gatagtttaa gtgcttatgc tacgcatttt tttgatgcgg atttgcttgt gattttaagc
    10501 gatattgatg gattttacga taaaaatcct agtgaattta gtgatgcaaa gcgtttagaa
    10561 aaaatcactc atattaaaga agaatggcta caagcaacca taaaaacagg tagtgagcac
    10621 ggaacaggtg gtatagtaac caaacttaag gcagctaaat ttttacttga acacaataaa
    10681 aaaatgtttt tagcaagtgg ctttgattta agtgtggcaa agacattttt attagaagat
    10741 aaacaaatag gtggaacttt gtttgagtga ttaatttatt aaattctctt ttaaaatcaa
    10801 ataagctata attaaaactt ttaatttcac acaaagcgaa aaaatgaaaa aaattatttt
    10861 tatgggcact ccatcttacg caacttgtat tttaaaagca ctagtagaaa atgaaaattt
    10921 taaactcgta gcacttttta ctcagcctga taaagccgta ggtagaaagc aaattttaac
    10981 tccaagtgat actaaggctt ttttaagtca aaattatcct agtattccta tttttactcc
    11041 aagttcttta aaagataaaa atattataag agagattagg gatttaaatc ctgattttat
    11101 cgtggttgct gcctatggaa aaattttacc taaagtcatt ttggatttag cgccttgtgt
    11161 gaatttgcac gcttctttac ttccaaaata ccgtggtgcc agtccgatcc aaagtgcaat
    11221 tttaaataaa gatgaaaaaa gtggagtttg caccatgctc atggaagaag ggcttgacac
    11281 aggtgctata cttgaaagct tagaatgtga tataaaagat aaaaattcaa gtgaagtttt
    11341 tgaactttta gcaaatttgg ccgctaagct gatcctctct actcttttaa attttgataa
    11401 aatcacccct aaaaaacaag aggaaagtct agcaacgctt tgtagaaaaa tcaaaaaaga
    11461 agatgggctt ataaatttgc aaaatgcaag agaactttat caaaaatatc tagctttcac
    11521 cccttggcct ggagttttct tggaaaatgg acttaaattc ttagaacttg aacttgtgga
    11581 tgaattaaaa caaaatgcta agatgggtga aattttagaa ttagaaaaag aaagtttttt
    11641 gcttgcttgc aaacaaggag ttttgcgtat taaaaaactt caagaaagtg gaaaaaaagc
    11701 tcttgatggc aggacttatt taaatggaaa aaggcttaaa agtgaagata gtttgtgttg
    11761 aaagtataga ctcaactcat ctttttttat gcgagcaaat acgcaatgga aagattgatg
    11821 aaaattttgc tatttatgct ttagaacaaa caaatggagt tggaagtagg gaaaattctt
    11881 ggcaaagctc taaaggaaat ttacatcttt ctttttgtat taaagaagaa gatttaccaa
    11941 aagatttacc tttagcttct gtgagtattt attttgctta tttacttaaa gaagttttac
    12001 aagaaaaagg ttctaaaatt tggcttaaat ggcctaacga tctatattta gatgataaaa
    12061 aagctggagg agttataagt gctaaaattt caaattttat cataggcggt atgggtttaa
    12121 atcttaaatt tgcaccccaa aatacagctt tatgcgatat agaaatttcg cttaaagatt
    12181 tagtgagtga gtttttgcaa aaagtagaaa aaaaaatttt atggaagaat atttttagca
    12241 agtatatgtt agaatttgaa aaatcaagaa aatttagcgt ccatcatgaa ggtaaagttt
    12301 tttcacttga aaattctttt ttgtacgaag atggttcaat tttactaggc gataaaaggg
    12361 tgtatagttt aagatgagcg aaattattac aatagcaaat caaaaaggtg gagtaggaaa
    12421 gactacaaca gcagtaaatt tagccgcttc tttggctgtg gctgaaaaaa aagtactttt
    12481 gattgatgtt gatccacaag ctaatgcgac tacagggctt ggttttaatc gtaataatta
    12541 tgagtataat atttaccatg tttttatagg aagaaaaaag ctttcagata ttattttaaa
    12601 aacagaattg ccacaacttc atttagctcc ttcaaatata ggtcttgtag gtatagaaca
    12661 agagcttgct aaaggtgaaa ataatgagaa aaaaatgtta cttaaaaatc aaattcaaga
    12721 agtaattgat gagtatgatt ttattattat tgattctcca cctgctcttg gaagtattac
    12781 tataaatgct tttgcagcaa gtgatagcgt aattatccct atacagtgtg aattttatgc
    12841 gcttgagggt gtagctatgg ttttaaatac aattaaaatt atcaaaaaaa ctattaattc
    12901 taaactcagg gttcgtggat ttttaccgac aatgtatagc tctcaaaata atctttctaa
    12961 agatgttgta gatgatttga aacaaaattt taaaaaacaa ctttttacta ttaatggaaa
    13021 cgaagatgac tttattgtga tccctcgcaa tgtaaaactt gcagaaagtc caagttttgg
    13081 aaagcctata attctttatg atattaaatc gccaggttct gttgcttatc aaaatttggc
    13141 gtattctata ttaggataat tataatgggg ttaaataaag ataggggttt aagtagttta
    13201 atcagtgata tggatactgt ttatagcaaa gaattgggtt ttgataaaaa tcaaagcact
    13261 atgatagaaa ttgatcaaat ttcacccaat ccatttcagc caagaaagaa ttttgatcaa
    13321 gaagctttag atgagcttgc taattctatc aaagaatttg gacttattca gcctattatt
    13381 gtatttaaaa aaaataataa atttatttta attgctgggg aacgtcgctt aagagcagtg
    13441 aaagcattag gaaaaaaaga aattctagct tttattgcta atattgatga gaataaactt
    13501 agagaattgg ctcttattga aaatatacaa agagagaatt taaaccctat tgaacttgct
    13561 aattcttata aggatttgat gcaagttcat aagattactc aagagaattt agcagaactt
    13621 attcataagt ctcgtactca aataacaaat actttaagac ttctgaattt agatattaga
    13681 actcaagagt tgattgcttc tggaaaaatt tctcagggtc atgctaaagt tttggttggt
    13741 ttagatcaaa aagatgaaaa aatgttggtt gatagcataa taggtcaaaa acttaatgtt
    13801 agagatactg aaaaaatagt taaaaaaata aaaaataatg aaagcttacc taatcaagaa
    13861 tttgaagatg aaataaaaaa attaaaacaa atactaaatc gctttggatt tgactgcaaa
    13921 aataaaaata atgattttgt aattcattta gaaaatattg ataaaattaa aaaattaatc
    13981 aaaatgcttg aaaagtttta accaaaatct tagctttttt atggtaaaat agtccttcaa
    14041 aaattctaac caaggagaat tatgtttgaa gatatgcatc cttccataat gcttgctact
    14101 atagctattt ttttggctat gatagttatt ttaaatagta tgctgtataa gccgctttta
    14161 aaatttatgg atgaaagaaa tgattctata aaaaatgatg agaataaagt aaaagaaaat
    14221 tctcaagaag ttttatgtgt gaatgatgaa ttagaagtta ttcatattaa cactagagaa
    14281 gaaattcaaa aaatcaaaca aagtgctata gctgctgcta aagaagaggc agagcaaatt
    14341 cttagaagca agaaagaaga attagaaaga aaaatggcca gcttttatgc agatttagct
    14401 attcaaaaaa aagagttaca agaacattta aacatacatt tacctgagct taagcaagct
    14461 ttgcaaaata acataaagaa aatttaagag gagagaaatg agtaagttat tatttattat
    14521 atttttgcta cctttgtatg cttttggtgc atcaaacggt agtggagaat atgatattat
    14581 tccaaggact attaattttc taatttttgt gggtatattg tattattttg ttgcaactcc
    14641 atttaaaaat ttttacaaaa accgtattgt aaaaatttct tctaaacttg atgaaattca
    14701 aaaaaaactt ttagaaagta aagctaagaa attagatacg atgaaaaaac ttgaagaagc
    14761 taaggcaagt gctgctgccg ctttaattac agcaaaaaaa gaagctgaaa ttttagttca
    14821 aaatattaag aaagagactc aagatgagtt agatttactt caaaaacatt ttgaggaaca
    14881 aaaagattat gaatttagaa aaatggaaaa agaattagta tcaaatactt taaatgaaat
    14941 tttttctgat ccaaatatga cattaaaaca gagtgaaata atagaactta tgatgaagaa
    15001 ggtatcttaa atatggaaaa tataattgca agaagatatg caaaagcgat agcttcaaga
    15061 gctgatataa atgattttta tcagaatttg tgtattttaa attctgcttt tgttttgcca
    15121 aaatttaaaa atattataga atctaatgag attaaaaaag aaagaaaaat ggaatttctt
    15181 gattcttttt ttgatattaa aaattctagt tttcaaaatt ttttaagact tttgattgaa
    15241 aattcaagat tagaatgcat tcctcaaata gttaaagaac ttgaaagaca aaaagctttt
    15301 aaagaaaata tttttgttgg tattgtatat tctaaagaaa aattaagtca agaaaatctt
    15361 aaagatcttg aagtcaaact taacaaaaaa tttgatgcaa atattaaact aaataataaa
    15421 atcagtcaag atgatagtgt taaaatagaa ttagaagaat taggttatga actttctttt
    15481 tctatgaaag ctcttcaaaa taagctaaac gaatatatat tgaaaattat ctaaggagaa
    15541 aaagtaaatg aaatttaaag ctgatgagat cagttcaata atcaaagaaa gaattgaaaa
    15601 ttttgattta aatcttgaaa ttgaagaaac aggaaagatt atttctgtag ctgatggtgt
    15661 tgctaaggta tatggactta agaatattat ggctggagaa atggtagaat ttgaaaatgg
    15721 tgataaagga atggccttaa accttgaaga gtcgagtgta ggtattgtta tacttggaaa
    15781 aggagaaggt ttaaaagaag gtgcttctgt aaaaagactt aagaaattac ttaaagttcc
    15841 agtaggtgag gctttgattg gccgtgttgt aaatgcttta ggtgagccaa ttgatgctaa
    15901 aggtgtgatc aatgctaatg aatatcgttt tgttgaagaa aaagcaaaag gtattatggc
    15961 gagaaaaagt gttcatgagc ctttacatac aggaattaaa gctattgatg cgcttgtgcc
    16021 aattggtcgt ggtcaaagag agcttatcat aggtgataga caaacaggta aaactactgt
    16081 tgctgttgat actattatat ctcaaagagg tcaaggagtt atctgtatat atgtcgcaat
    16141 tggtcaaaag caaagtacag tggcacaagt ggttaaaaga ctagaagaac atggtgctat
    16201 ggaatatact attgttgtaa atgccggtgc ttcagatcct gcggctttac agtacttagc
    16261 tccatatact ggtgtaacca tgggtgaatt ttttagagac aacgcaaaac atgctttaat
    16321 tgtttatgat gatttgagca agcatgctgt agcttatcgc gaaatgtctt tgattttacg
    16381 tcgtcctcca ggtcgtgaag cttatccagg cgatgttttt taccttcatt caagattgct
    16441 tgaaagagca agcaagctaa atgatgaatt aggtgctggt tctttgacgg cattgccgat
    16501 aattgaaaca caagcaggag atgtttctgc ttatattcca actaatgtta tttcaattac
    16561 agatggacaa attttcttag aaactgattt atttaactca ggaattcgtc ctgcaattaa
    16621 tgttggttta tcagtatctc gtgtaggtgg ggctgctcaa attaaagcta caaaacaagt
    16681 ttcaggcaca ttaagacttg accttgctca atatagagag cttcaagctt ttgcacaatt
    16741 tgctagtgat ttagatgagg caagtagaaa acaacttgaa cgtggacaaa gaatggttga
    16801 actcttaaaa caaccacctt attctccgct tagcgttgaa aaacaagtag ttttaatttt
    16861 tgcaggaacc aaaggtttct tagatgatat tgctgtttct agaattaagg aatttgaaga
    16921 tggaatttat ccttttattg aggcaaaaca tccagatatt tttgagcaaa ttcgctctaa
    16981 aaaagcttta gattctgatt tggaagaaaa actagctaaa gccattaatg agtttaaagc
    17041 aaatcattta taaggtcttt tatgtctaat ttaaaagaaa ttaaaagaaa aattaaaagt
    17101 gttcataaca ctcaaaagac tacaaatgct atgaagctag tttctactgc taagttaaaa
    17161 aaagcagaag aagcagctaa aagatcaaaa atttatgcac aaaaaatcga tgaaattttg
    17221 agtgaaattt catttcagat caataaaatt gttcacaatg aagatgatgt gcgtttatct
    17281 ttgtttcata aaaaagaaca aattaaaacc gtagatttaa tatttatcac tgcagataaa
    17341 ggcttatgcg gtggttttaa tattaagact ttaaaaacag taagtgaaat gctaaaagaa
    17401 tatgaagcaa aaaatattaa tattcgtctt agagctatag gtaaaactgg gattgaatat
    17461 tttaattttc aaaaaataga attgttagag aaatatttcc atcttagttc tagtcctgat
    17521 tatgagaaag catgtgaagt aattcatgct gctgtagatg attttttaaa tggaaataca
    17581 gatgaagtga ttttagttca taatggttat aaaaatatga ttacccaaga acttaaaatt
    17641 aatcatctta ttccagttga gccaaagagt attgaacaga ctcataattc tcttttagag
    17701 cttgaaccgg aaggaactga gcttttagaa gatttaatga aaacgtattt tgagtataat
    17761 atgtattatg cgttaatcga ttctttggcg gcagagcata gcgcaagaat gcaagctatg
    17821 gataatgcaa ctaataacgc aaaggcaaga gtgaaacaac taaatttagc ttataacaaa
    17881 gcaagacaag aatccattac tactgagctt atagagatta tcagtggtgt tgaatcaatg
    17941 aaatagtaaa attttaagga gaagataaat aatgcaagga tttatttcac aggtattagg
    18001 tccggttgtt gatgtagatt ttaacgacta tttacctcaa attaatgaag caattgttgt
    18061 aaattttgaa agcgaaggaa aaaaacataa acttgtttta gaagtagcag ctcatttagg
    18121 agataataga gttagaacta ttgctatgga tatgacagat ggtttggtaa ggggattaaa
    18181 agctgaggct ttaggtgctc ctattagtgt tcctgttggt gagaaagttt taggaagaat
    18241 tttcaatgtt actggagatt tgatcgatga aggtgaagaa atttcttttg ataaaaaatg
    18301 ggcaattcat agagatccac cagcttttga agatcaaagc acaaaaagtg agatttttga
    18361 aacagggatt aaagttgtag atttacttgc tccttatgca aaaggtggta aagtaggtct
    18421 ttttggtggt gcaggtgttg gtaaaactgt tattattatg gagcttattc acaatgttgc
    18481 atttaagcat agcggctatt ctgtatttgc aggtgtgggt gagagaactc gtgaaggaaa
    18541 tgacctttat aatgaaatga aagaaagtaa tgttttagac aaagttgctc tatgttatgg
    18601 acaaatgaat gaaccaccag gggcaagaaa tcgtattgct ttaacaggtt taacaatggc
    18661 tgagtatttt agagatgaaa tgggtcttga tgtgcttatg tttattgata atatctttag
    18721 attttcacaa tcaggttctg aaatgtcagc acttttagga agaattccat cagctgtggg
    18781 ttatcaacca accttagcaa gtgaaatggg taaattccaa gaaagaatta cttcaactaa
    18841 aaaaggctca atcacttcag ttcaagctgt ttacgttcca gctgatgact taaccgaccc
    18901 agctccagca actgtttttg ctcacttaga tgctacaacg gttttaaata gagctattgc
    18961 tgaaaagggt atttatcctg cagttgaccc acttgactca acttcaagaa tgcttgaccc
    19021 aaatatcatt ggagaagaac attataaagt tgctcgtggt gttcaatcag tgcttcaaaa
    19081 atacaaagat ttacaagata tcatcgccat tttaggtatg gatgagctta gcgaagagga
    19141 taaacttgta gttgaaagag caagaaagat tgaaaaattc ttatcacaac catttttcgt
    19201 tgcagaagtt ttcacaggta gcccaggaaa atatataagc cttgaagata caatagcagg
    19261 atttaaggga attttagaag gtaaatatga tcatttacca gaaaatgctt tctatatggt
    19321 tggaaatata gatgaagcta ttgcaaaagc ggataaatta aaaggttaat ttatgaacga
    19381 tttgattaat ttcgagatag ttacgccttt gggtgtaatc tatcaaggag aagtaaaatc
    19441 tgttacttta ccgggtagtg aaggagaatt tggcgtgctt aaaggacatg ctgctttggt
    19501 ttcttcttta aaatctggag taattgatat tgaaaaagct gatttaaacc atgaattaat
    19561 tgctattgat gctggacatg caaaggtaga tgaagataag atttgcgtgt tagcaaaggg
    19621 tgcggtttgg gtttgtggaa gtgatgaaag tgagattgaa aaaaatcttg ctcaagcaaa
    19681 agatttgatt aaatctatga gttctgataa tgcagcttta gcagcaactt tttcaaaact
    19741 tgataatgca aggatgcatt aatgaatttt gaagctatat ttcatttttt caatagttca
    19801 agtattatta cttatatagt tttattatgg ctttctttat attttatttt agcatttagt
    19861 attttgtttg ctagattgac ttatttggct acatggagaa acaaggagaa agaaagttta
    19921 gaaactttgc tcttgggtga gaaggattta agtcgtactg attcgatttt aagaaaatgt
    19981 aatgatacaa cttcaaatca tttagaaatc tataaaaatt tagcaagtcg ccgcgcttct
    20041 gctggactta cttggcttag tattattgct tcaacttcac cttttatagg tctttttggg
    20101 acagttattt ctatacttga aacttttggt gggcttggaa ctcaaaattc tttaagtctc
    20161 atagctccta aaatcagtga ggctttagtt gctacaggtt gtggtatttt agtagcaatt
    20221 cctgcttata catttcatct catcattaaa agaaaagctt ttgaactttt aagcattatt
    20281 gatagcgaga ttaaagttat aagttcgagt aaataaggtt aaaaatgcca tttgatgatg
    20341 aaaaacctga acttaatatc acacctttag tagatattat gcttgtattg cttgcgattt
    20401 taatggtaac agctccaagc attacttatg aagaaaaaat taatcttcca caaggtagtc
    20461 aaaaaaatac tagcgctcca actgttaaga gtttaattat tagtattaat gcaaaaaaag
    20521 aaattttttt aaatcaagaa aaatacgatt ttataagttt tgctgataat cttgctcaaa
    20581 gaaaagcaca atttaatacc gaagatccgg tttttatacg cgctgataaa agcttaaaat
    20641 atgacgatgt tatttcagtc ttaagaagtg taaaaaattt aggatttaat aaagttgctt
    20701 tacagactga ataatcatga aaaattatgg tttgagtaat ttaaattcgt ttttacttgc
    20761 tttagcaata tatgttggta tagtaattct tgtttttttt agacttgtaa gcgaggttga
    20821 acccgctata caatataccg atataaaaga tagttttgta gatattgaac ttgctgaacc
    20881 atcaaaacaa gttattactc aaagcaacac tcctaaagaa atacaaaaat caacagagca
    20941 aattgatata gaaaagcttt ttgctcagac tacaaataaa acagttaaaa ccgaagatat
    21001 tgaccaaaag gcaagtaatt ttaatgagct ttttggaaat attaaagaaa tacaagaaga
    21061 aaagactaca aaaattcaat caagtactaa atcaggaatt tctagtgccc caaaacctca
    21121 agcttctgaa cttgtaaaac aacttaatga tagcttgctt caagaagaaa gttcaacaca
    21181 aggtgaaagt acaaaggcac aaaaaattgg aatttatgat gaatttttag ggaaagtcgt
    21241 gcgtattatc actcaaagat ggactcagta ttatccaaat agtgaaaaaa tttctgttaa
    21301 ggtaaaaatt tttattgatg aaaatggaaa atttggctat acttcagttg aaaaaagtgg
    21361 gaatccttta tatgatgcta aagtggctga atttttagaa agtcaaaaag gtaaatttat
    21421 tacttatcct ccgcaaaata aaaatataag cattaccatg aatttaagag atgaagcaaa
    21481 agttaaaaat gattaggaga acaaaatgaa aaaaattgta gcaatttttt tagtcttttt
    21541 aggaagtctt tgggcagaag atccggttat tgatgttgtt aattctggtg tggttttacc
    21601 aaagattatc gttaaagata attcaaattt aagtgatgag aatttaaaga aaagctttta
    21661 taatatcatt gtgaatgatt tgaaagtaag ttcaaacttt gaagttgttg ctaatgcaac
    21721 tgagacaagt aattatactt ttgaatacac tttaaataaa aatggtaaca ctttgagttt
    21781 aaatgtaaaa ataaaagctg gcggttctga taagtcagag caaacttata ctttaaatgg
    21841 tttagagcaa tatccatttt tggcacataa aagcgtcaaa gcttctgtaa atgcgttagg
    21901 acttgcacct gttgattgga tggatcataa aattttgatc gcgagaaatt ctagctctaa
    21961 aaaaagtcaa attattatgg ctgattatac tttaacttat caaaaagtta ttgttgatgg
    22021 tgggcttaat ttatttccaa aatggggaaa taaagaacaa actctatttt attatacagc
    22081 ttatgatcat gataagccaa ctttataccg ttatgattta aataccaata aagctagtaa
    22141 aattttatca agtggcggta tggttgtagc aagtgatgtg agtgtagatg gaagtaaact
    22201 acttgttacc atggctccaa aagatcagcc tgatgtttat ttatatgact taaataccaa
    22261 aaatctaaca caattaacta attattctgg tattgatgtt aatggaaatt ttattggctc
    22321 agatgatagt aaagtggtat ttgtaagcga tcgtttagga tatcctaata tttttatgca
    22381 agatttaaat agcaatagtg ctgaacaagt tgtttttcat ggtagaaaca attcggctgt
    22441 ttcgacttat aaagattttt tggtttattc aagtcgtgaa ccaaatcaag caggtgtttt
    22501 taatatttat ttgatgtcaa ttaatagtga ttatattcgt caacttacag caaatggaaa
    22561 aaatttattt ccaagatttt ctagtgatgg tggaagtata gtatttatca aatatttagg
    22621 tgcgcaaagt gctttgggtg ttattcgtgt aaatgcaaat aagacttttt attttcctct
    22681 tagggttgga aaaattcaat caattgattg gtaaaaattt caattttagg ttaaaat
//
LOCUS       DBBXPZ010000022        21549 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.022, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000022 DBBXPZ010000000
VERSION     DBBXPZ010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21549)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21549)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21549
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.022"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            14..511
                     /gene="pal"
                     /locus_tag="ACJFD7_000676"
     CDS             14..511
                     /gene="pal"
                     /locus_tag="ACJFD7_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HGG0859516.1"
                     /translation="MKKILFTSIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGW
                     DIDSKISQLNDTLNKVYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEW
                     GTDEYNQALGLKRAKAVKEALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAE
                     FKLSR"
     gene            515..1462
                     /locus_tag="ACJFD7_000677"
     CDS             515..1462
                     /locus_tag="ACJFD7_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HGG0859517.1"
                     /translation="MKKIFTVALLGATLLYAESSAFGAGDITSNSSYGLTSNEKLFKE
                     KLDNLNNENIQTNARINEINERIEGLQSTLEGINSQYAKSNSRLSQVEENNQNIENNF
                     TSEIQKLKAYVEESRKIQEANNKQVKKVLAELSSLVDAINANYVSKNELNDANLSVKT
                     ITPSVVVSTTDSNSTIENNNTQNTQDDKAKQIDESWKKKKNNEILELAIKDVDKNAFE
                     DSKAKLNFLITKQYKPARANFWLGEIEYKQKNYNNAIVYYKKSSSLSTKGDYFPKLLY
                     HTAISLDKTGDTKTANGFYKALKTNYPNSPEAKASPNRK"
     gene            1477..2046
                     /locus_tag="ACJFD7_000678"
     CDS             1477..2046
                     /locus_tag="ACJFD7_000678"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HGG0859518.1"
                     /translation="MAIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILE
                     SLEEEVMKLDYPSNADVVIKKEKGLGEYDENAVQTLPKEQFAGIDLKVGMELFGEGEN
                     GETVRVTVKEIGENDVTIDYNHPYAGRDLLFSLNIVDARAASEDEILTGIIAGSHSCG
                     CGSGHGHDHHHGHGHGGGGCCGGGGCGCH"
     gene            2094..2966
                     /locus_tag="ACJFD7_000679"
     CDS             2094..2966
                     /locus_tag="ACJFD7_000679"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HGG0859519.1"
                     /translation="MGKDFYENSIKAKELLQNASDFCKIDFKHLLFEENEKLNQSEFT
                     QPAIVLNSLMAYSVLLEKKPDLSSKFALGHSLGEFSALAVNGAFDFLEALSLVNKRGL
                     FMQEDCAKVEAGMMVVLGLDDEKVEELCQKAQKENKQIFAANYNCDGQIVVAGLKPDL
                     ASYESVFKEAGAKRAMLLNMSVASHCPLLENASAKLCVELEKVLKPNFKAVLSNANAK
                     IYTSKEEALELLKAQLISPVLYKQSIKACENEVDYFIEFGASVLKGLNKKITSKETYA
                     LTNMNDIDEFLKVV"
     gene            2963..3652
                     /gene="pfs"
                     /locus_tag="ACJFD7_000680"
     CDS             2963..3652
                     /gene="pfs"
                     /locus_tag="ACJFD7_000680"
                     /EC_number="3.2.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxyfutalosine nucleosidase"
                     /protein_id="HGG0859520.1"
                     /translation="MMKIAILGAMSEEITPLLETLKDYTKIEHANNTYYFAKYKNHEL
                     VLAYSKIGKVNSTLSASVMIEKFGAQALLFTGVAGAFNPELEIGDLLYATKLAQYDLD
                     ITAFGHPLGFVPGNEIFIKTDEKLNNLALEVAKELNIKLRAGIIATGDEFICDEAKKA
                     KIREIFNADACEMEGASVALVCDALKVPCFILRAMSDKAGEKAEFDFDEFVINSAKIS
                     ANFVLKMCEKL"
     gene            3649..4401
                     /locus_tag="ACJFD7_000681"
     CDS             3649..4401
                     /locus_tag="ACJFD7_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine biosynthesis TtcA family
                     protein"
                     /protein_id="HGG0859521.1"
                     /translation="MINLSKKLIRQVAQANAKFGLIKDGDRVLLGLSGGKDSLALAHL
                     LNRMQAHAPFKFELEAVTLSYGMGEDYSHLHAHCEEHGIKHSVLDSNIYEVSGDTIRE
                     NSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDAAESFFMNFIYNGALRTLAPIY
                     QSKRGITVIRPLIFVRERQLRDNATQNELSVIGNEFCPGMKLNEKNVKFPHAREEAKQ
                     LLANLEKDHPKLFTSLKTAFANLHLASKGIKA"
     gene            4398..4919
                     /locus_tag="ACJFD7_000682"
     CDS             4398..4919
                     /locus_tag="ACJFD7_000682"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HGG0859522.1"
                     /translation="MKKAFVLVDYQNDFIDGSLGFDKALKIKENILKALNQIDFNNTH
                     LLLTYDTHDEHYLQSKEGLNLPVKHCIKESLGWQMPKEFEPFLQKAHKIFYKNTFGSL
                     ELANFIQKSDYEELHFAGLVSHICVFCNIILAFGAKPNARIILHQNLSASFDENLEKS
                     AFDILRAYGIEIV"
     gene            4919..5533
                     /gene="recO"
                     /locus_tag="ACJFD7_000683"
     CDS             4919..5533
                     /gene="recO"
                     /locus_tag="ACJFD7_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecO"
                     /protein_id="HGG0859523.1"
                     /translation="MQGFIFHTQKVKDEDLIVYILSPKMLIKAYRFYGLRHSSILSGY
                     KIDFALEENPGFLPRLKDVLHLGFLWIMQRDKMLIWQEFIRLLYRHLKDVEELDSFYF
                     DLLDECVKRFEKQNPKRVIVDAYLKILEFEGRLHKDFFCFACDEKIQNSITLLRAFLP
                     SHSQCALGFEFEEKKLKQFYSSKNCAIFDDEEIENLYHLIKEGL"
     gene            5530..5937
                     /gene="ybeY"
                     /locus_tag="ACJFD7_000684"
     CDS             5530..5937
                     /gene="ybeY"
                     /locus_tag="ACJFD7_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HGG0859524.1"
                     /translation="MILSDEKCDFLESIASFLSPKDVELVFVDSKEMQEINLEQRKQD
                     KTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGF
                     DHENDNGEMREKEKELIEHFNLPKSLIVRTLED"
     gene            6061..6750
                     /locus_tag="ACJFD7_000685"
     CDS             6061..6750
                     /locus_tag="ACJFD7_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859525.1"
                     /translation="MIVFPLSSFNRYFGNNPLQTLTKIRDESIENGNPELTKKQREEL
                     GNDLIDLYKISKKFSDKIELVEGSIEDKLRNNELPESEVKNLFQWMDENAKHPRWMHI
                     DGVSYDEAYVKIFHTSKSIDEFKEKYLELQKKYFVDFNNIDSSQKKLQETSEEDKKAF
                     KPIQVESKSETYKDDNKMNELLRKLLETKFGTSDELEILFGMNFSNDNAGEFNKILSQ
                     NTSAKIIDIKA"
     gene            complement(6774..7700)
                     /locus_tag="ACJFD7_000686"
     CDS             complement(6774..7700)
                     /locus_tag="ACJFD7_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase"
                     /protein_id="HGG0859526.1"
                     /translation="MIDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNAL
                     VYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNK
                     VVKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGV
                     DFVSIHGRTRKQLYSGKADYESIANAKASVKIPVIANGDINAQNAKEVYKITKCDGLM
                     IGRASVGNPWIFYEIKSGKSVDEKLKKEIILTHFDEMIKHYKDQGVSIFRKHLHEYSK
                     GHKDASAFRDEVNRIDNTEKMRKKIEEFFSLA"
     gene            complement(7697..8683)
                     /locus_tag="ACJFD7_000687"
     CDS             complement(7697..8683)
                     /locus_tag="ACJFD7_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859527.1"
                     /translation="MKIKLFLLASFIYIALIFAFAWHLELGSYTLNISTYTFELPIMI
                     WLVIPLFIYMILAILHIAFYGFLRYLKFKHFFKDAAKFEAYTQDLLLEKDLKTTFQTK
                     EFRSVAQLFKTIKTHEKIPHSNKINEILDLIDGLNKNEFFNLSKFKLENNNVLYLQNE
                     KNHLKNDANYAYNKLKNLNEIKDEFEEIAFNTLIEKASYEQIKNVKIPKKPSEVLTLI
                     KRFKEGNLELSVAEYEVLLSHNILSEKDYLNAAKLSTKLLNPDAILGIFNKIKNEKSE
                     ALRAYLYLLAEFGLLDELREQIHNDDKKFNDFKAFLALREKNIKIDLNQLIQ"
     gene            complement(8673..9035)
                     /gene="dksA"
                     /locus_tag="ACJFD7_000688"
     CDS             complement(8673..9035)
                     /gene="dksA"
                     /locus_tag="ACJFD7_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK suppressor DksA"
                     /protein_id="HGG0859528.1"
                     /translation="MKKNEIQNFKNILEERKKAILENLQSNSNEIEALHNSVPSDSVD
                     FSVIETGSQIDFAISTNLKEELIEIEDSLDKIKNGTYGICESCDDEIDSQRLKVKPHA
                     RYCITCRQIAEQGKKHEN"
     gene            complement(9047..9496)
                     /locus_tag="ACJFD7_000689"
     CDS             complement(9047..9496)
                     /locus_tag="ACJFD7_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HGG0859529.1"
                     /translation="MQVNIFCIQKSDEFKTCSEKYSKLISKYATLKEINVFNKKIALA
                     QNLNAIEAKKSYEEAFMPYKKGYCIALDEKGKDLTSIEFAKLIQDKNELSFFIGGAYG
                     LREEFNQSLDFRLSLSKLTLAHQFVKTLLLEQIYRAFCINNNHPYHK"
     gene            complement(9498..10340)
                     /gene="accD"
                     /locus_tag="ACJFD7_000690"
     CDS             complement(9498..10340)
                     /gene="accD"
                     /locus_tag="ACJFD7_000690"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HGG0859530.1"
                     /translation="MNFADIFSKIRRQQPSIKEAPNHWVKCQNCHALMYYKEIESCFN
                     VCPKCNYHMRISADERIKLLSDEGSFIEYDANLEAIDPLKFVDSKSYKKRLSEGESKT
                     GRKSSVISGECEVNGLKTQLVVFDFSFMGGSLGSVEGEKIVRAIQRAITSKTSLVIVS
                     ASGGARMQESTYSLMQMSKTSAALKLLSKEKLPYISILTDPTMGGVSASFAWLGDLII
                     AEPEALVGFAGARVIKQTIGADLPEGFQKAEFLLEHGLIDAIVERGEQKQYLSDVLKF
                     FSGK"
     gene            complement(10349..11071)
                     /locus_tag="ACJFD7_000691"
     CDS             complement(10349..11071)
                     /locus_tag="ACJFD7_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HGG0859531.1"
                     /translation="MKEFLDACLNANLQIRKYLNNIPQNDLKLCSKLGYDKNQGYELD
                     LKCEQIFIKYLSCFGQIFSEESGLIGKASPKQMILDPLDGSSNFVSKIPFYGTSIALM
                     EKDQAKSAFVCNLVSQEIFAFKNNQAFKSNLSDPKYSPLTPNLFPKIGIVEKISFYPE
                     LLDFLTKNQLKFRSLGATALSLAYASYFSFVLILGKTRIFDTAAALAIHQNLYIEKNE
                     NFLLLSQDKKIFDIILEFLKNN"
     gene            complement(11071..13290)
                     /gene="bamA"
                     /locus_tag="ACJFD7_000692"
     CDS             complement(11071..13290)
                     /gene="bamA"
                     /locus_tag="ACJFD7_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_process: GO:0071709 - membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HGG0859532.1"
                     /translation="MKKHLISICALVAMANAATIKNIKFIGLNHLSNTSAINIAGLKI
                     GEEINPAKINTAILNLYKQNYFENIAVENNNGILEIIVTEKPTIAKVSITGIASNDRK
                     QVESILGIKRGTLLDEGSIKEAIERIKAYYEAKSYFDTIVEYKKKTLENTDGLELEFI
                     VNRGENIIIDNVHLSGAKKFSYSDIEPAVVNKEKEFMGWMWGRNDGKLKVFELSNDSS
                     RIADEYMKKGYLDVQVSSPYLKTYTDTYQANLTYFIKEGKPYKIKSISIENPLFDDKQ
                     NAQTVKDLRSSAGKTINIEDIRKDVKTIETQSADLGYAFVEVYPDIQKNDQTQEATVV
                     FKVIPHDKVYIRNVIISGNSRTVDRVIRRELYITEGNLYNRTDLSESKNALKRTSYFD
                     DVNIKEEKVDDTHIDLIVDVKEASTGAISGGIGYGSSDGILLNASLSDTNIFGSGIKS
                     SVSVDKSDDTLSGRISLVNPRVLDSQYSLGGTLYSNDYEWDNYSEKNYGFDITVGRQF
                     ARYYNVSLTYNLEQSDIYHLSPTLLRTGYELGKSIKSSITPAITFNNTDDYYLPRSGI
                     IASTSLEYAGLGGDQEFISSSSKFNFYQGLQDYIGYDLIYRYKASFYKVWDEGYLPIN
                     QRIYLGGIRSIRGFESRTVSPKNQWGDEIGGTIAFANSVELSFPLIDRIKLRGSVFFD
                     YGMIGRKNLDEIKRMSTGIGIEWITPIGPLQLVFAKPLNDKKGDDTNSFEFNLGTRF"
     gene            13367..14194
                     /locus_tag="ACJFD7_000693"
     CDS             13367..14194
                     /locus_tag="ACJFD7_000693"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004665 - prephenate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_function: GO:0008977 - prephenate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_process: GO:0006571 - tyrosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HGG0859533.1"
                     /translation="MKIAIIGLGLMGGSLGLCLKENKLISCVYGMDLSKENEKDALQL
                     GLIHELIEFKDLALCDMIFVATPVDAIIEILQKLVDLPSNVTIIELGSTKRKIIESLP
                     KNLIKQTLFAHPMTGTENSGPKAAFKELYKDAVCVLCDSEIADDLHQKRAVEIFSHLG
                     MKIVFMDSKAHDHHAAIISHLPHVISFSLANFVMKEEDKRNIVHLAGGSFKGMSRIAK
                     SSPQMWESIFLQNKDNLLSSIDFFQQELERCKQMIQLDKNDELREWMKQANTLREIL"
     gene            14274..15647
                     /locus_tag="ACJFD7_000694"
     CDS             14274..15647
                     /locus_tag="ACJFD7_000694"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HGG0859534.1"
                     /translation="MAKRKGKTYLSVLILVLIAILIFFISRLSIFEKNPPQILMPDVV
                     YTDLKKPILVHIKDDESSIKNVQIILHKDDNTSAMVIADEKISNLKDITLQVALPKFG
                     YKENVKSFVLEAIAKDSSFWNFFSGNEARKQIAVLVDNTAPKINIISNSYQIEQGGAG
                     AVVFKADDANLDKVYIETNKGKIFKATPYVKEGYYAALIAWDARDEEFRAFVIATDKA
                     GNISKERIRYYFVNRKYRVSNINLTDKFLDGKIENLANQYAPKDNNLNRYEKFKFVNE
                     TLRNSNEKLIHEITSKVPEEKIDNFDLNLFLPLKNGMKVADFADHRYYSYNGQFVSDS
                     YHMGLDLASVAQAPIISNNAGKVVFAAENGIYGLNLIVYHGFGVYSLYGHCSSKNVDL
                     DEMINKQSIIGKTGTSGLALGDHLHFGVLVQGVETRPEQWQDKKWIENNIYNVLNDGK
                     KIILGKN"
     gene            15647..16531
                     /gene="lpxC"
                     /locus_tag="ACJFD7_000695"
     CDS             15647..16531
                     /gene="lpxC"
                     /locus_tag="ACJFD7_000695"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HGG0859535.1"
                     /translation="MKQLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVFFRSDLN
                     ASYKASPENVINTQMATVLGDERGFISTIEHLMSAINAYGIDNVRIVLNANEAPVMDG
                     SSISFCMMLDEAGVKELDVPKKIMVIKKPIEVRDGNKFVRLTPTKEPRINYTIKFDNA
                     VIGEQSYNFEFSKKNYIENIARARTFGFLKDVQALRSMNLALGGSLENTIVVDENRIL
                     NPEGLRFKDEFVRHKILDAIGDLTLLGYRVFGDYTSYAGSHHLNHLLTKEVLKDKDAY
                     EIVSLEKTTQKAYEKVFA"
     gene            16570..16971
                     /locus_tag="ACJFD7_000696"
     CDS             16570..16971
                     /locus_tag="ACJFD7_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine biosynthesis
                     protein TsaB"
                     /protein_id="HGG0859536.1"
                     /translation="MIGIYQDDKLIKTYKSEEKASEFLPKILDELLKEYDFTSLIYAN
                     GPGSYMGIKISYVSLSTLSIVKNIPLFAVSAFELNGYKPISANKNFCFVYKEGEICLE
                     QNIPAEFFLPKNLQELKLNNDNLPFYFLDAI"
     gene            16980..17858
                     /gene="thrB"
                     /locus_tag="ACJFD7_000697"
     CDS             16980..17858
                     /gene="thrB"
                     /locus_tag="ACJFD7_000697"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HGG0859537.1"
                     /translation="MKILVPATSANLGPGFDCLGLSLKLFNETQIQKSGVFSISIGGE
                     GSDNIFLKKNNIFVNIFYEIYEKLSGKKDNFRFIFQNNIPLSRGLGSSSAVIVGAIAS
                     AYYMSGFKVEKERILDEALIYENHPDNIAPATLGGFVCSLVEKNKVYSIKKEIDKDLA
                     AVVVIPNLAMSTEQSRQALAKNLSFNDAVFNLSHASFLTACFLEKKYEFLKFASQDKL
                     HEINRMKNLPELFEVQKFALENKALMSTLSGSGSSFFSLAFKDDALALAKKIQTKFKD
                     FRVQYLEFDDNGFEIC"
     gene            17883..18140
                     /locus_tag="ACJFD7_000698"
     CDS             17883..18140
                     /locus_tag="ACJFD7_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HGG0859538.1"
                     /translation="MKKHIPIRMCIVCKNRFEQNMLFRFKVVLGDIVPKAEHGRSGYL
                     CQNCIEREDKVLQKAFSKICKNLNTKITQQGLKEIFLNGKD"
     gene            18127..20742
                     /gene="infB"
                     /locus_tag="ACJFD7_000699"
     CDS             18127..20742
                     /gene="infB"
                     /locus_tag="ACJFD7_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HGG0859539.1"
                     /translation="MAKIRIHEIAKELGYDSKEIIEKANELGLGIKTASNAVEPEIAA
                     AIYEYIQTREIPEAFKKNIKTPTAKKPKKENIKEQEKLNESEKKEPKKEEKLKQEVKK
                     EELKIEKENAKEEEKQEIIDAHKPQSLASATLAKRRGLVIVKKKKDEEEIQVKKEEVK
                     NSNDISINNEERLSLKTMFSNADESLKKKKKEKKSFVASKKESTEKMNFLDEHDFGDI
                     SLDDEDEVVLPDFSVKEQEKPQNINKKQPNFIRQAVGNSAGFGLEGGIQRRSRKKPSK
                     KIEKKEVEEVGSVAISKEIRVYEFADKIGKSTSEVISKLFMLGMMTTKNDFLDEDAIE
                     ILAAEFGIEINIINEADEFDYVKDYEEETDEKDLVTRAPVITIMGHVDHGKTSLLDYI
                     RKSRVASGEAGGITQHVGAYMVEKNGRKITFIDTPGHEAFTAMRARGASITDIVIIVV
                     AADDGVKPQTKEAINHAKAAGVPIIIAINKMDKEAANPDMVKTQLAEMEIMPVEWGGS
                     YEFVGVSAKTGMGIEDLLEIVLLQADILELKANPKSFAKASIIESSVQKGRGAVATII
                     VQNGTLTVGSTVVAGEAYGKVRAMSDDQGKALKEIKPGECGVIVGLSEVADAGEILIA
                     VKTDKEAREYANKRHEYNRQKELSKSTKVSIDELGAKIKEGNLKALPVILKADVQGSL
                     EALKASLEKLRNDEIKVNIIHSGVGGITQSDIELASASENSIVLGFNIRPTGEVKERA
                     KDKGVEIKTYNVIYNLLDDVKALLGGMMSPIISEEQLGQAEIRQVINVPKIGQIAGCM
                     VTEGVINRGAKIRLIRDGVVVYEGNVSSLKRFKDDAKEVAKGYECGVGIEGCDDMRVG
                     DYIESYKEVEEQASL"
     gene            20739..21101
                     /gene="rbfA"
                     /locus_tag="ACJFD7_000700"
     CDS             20739..21101
                     /gene="rbfA"
                     /locus_tag="ACJFD7_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HGG0859540.1"
                     /translation="MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKG
                     RYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEY
                     QNHMDALFEKIKKDKNES"
     gene            21091..21513
                     /gene="rimP"
                     /locus_tag="ACJFD7_000701"
     CDS             21091..21513
                     /gene="rimP"
                     /locus_tag="ACJFD7_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HGG0859541.1"
                     /translation="MNLEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCA
                     RLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAKSIGELVKIATNEKEKFE
                     AKIIAVDDENIILENLETQEKTTINFNDIKKARTFIIW"
BASE COUNT         7645 a         2873 c         3807 g         7224 t
ORIGIN      
        1 tgaaaggtca taaatgaaaa aaattctttt tacttcaatc gcagctcttg cagttgttat
       61 tagtggttgt agcacaaaaa gcactagcgt aagcggtgat agtagtgttg attcaaatcg
      121 tggttcaggt ggaagtgatg gttgggatat tgattcaaaa atttctcaac ttaatgatac
      181 tttaaataaa gtatattttg attttgataa attcaacatt cgtcctgata tgcaaaatgt
      241 tgtaagcaca aatgctaata tttttaacac tgaagtaagc ggtgtaagta ttactgttga
      301 aggaaactgc gatgagtggg gaaccgatga atataaccaa gctctaggtt taaaaagagc
      361 aaaagctgta aaagaagctt taatcgctaa aggtgtaaat gctgatagaa ttgctgttaa
      421 aagctatgga gaaacaaatc ctgtgtgtac tgaaaaaact aaagcttgcg atgcgcaaaa
      481 cagacgtgct gaatttaaat tatcaagata attaatgaaa aaaatattca cagtagctct
      541 tcttggagct actttacttt atgcagaaag ctcagctttt ggtgcaggag atataacaag
      601 caattcttct tatggtttaa cttcaaatga aaaattattt aaagaaaagt tagataattt
      661 aaataatgaa aatatacaaa caaatgctag aattaatgaa attaacgaaa gaatcgaggg
      721 tttacaaagc actttagaag gtataaattc tcaatatgct aaatcaaatt ctagattaag
      781 tcaagttgaa gagaataatc aaaatattga aaataatttt actagtgaaa ttcaaaaatt
      841 aaaggcttat gttgaagaaa gtagaaaaat tcaagaagct aataataagc aagtaaaaaa
      901 agttttagcc gaacttagtt ctttagtaga tgctattaat gcaaattatg tttctaaaaa
      961 cgaattaaat gatgcaaatt taagcgttaa aactattaca cctagtgttg ttgtttcaac
     1021 tacagattca aatagtacca ttgaaaacaa taatactcaa aatacccaag atgataaagc
     1081 aaaacaaatt gatgaatctt ggaaaaagaa aaaaaataat gaaattttag aattagcgat
     1141 aaaagatgtt gataaaaatg cttttgaaga ttccaaagca aaattaaatt ttctcataac
     1201 aaagcagtat aaacctgcaa gagcaaattt ttggttaggg gagatcgagt ataaacaaaa
     1261 aaattataac aatgctattg tttattataa aaaaagttct tctttgagta caaaaggaga
     1321 ttatttccca aaacttttat atcatactgc catttcattg gataaaacag gtgatacaaa
     1381 aacagcaaat ggtttttata aagctttaaa aactaattat ccaaattcac ccgaagcaaa
     1441 agcttcacct aatagaaaat aaattaagga gataaaatgg ctatagaaaa aaatagtgta
     1501 gtttcaatgt tttatgagtt aaaagatgca aatacaaatg aagttttaga atcaaattta
     1561 tattctcaac ctatttcttt tattttgggt aaaggtcaga ttttagaaag cttagaagaa
     1621 gaagtgatga agcttgatta ccctagcaat gctgatgtgg taattaaaaa agaaaaaggt
     1681 ttaggcgaat acgatgaaaa tgcggttcaa actttaccaa aagagcaatt tgcaggtatt
     1741 gatttaaaag taggtatgga gctttttggc gaaggtgaaa atggcgaaac cgttcgtgta
     1801 actgtaaaag aaattggtga aaatgatgtg acaattgatt ataatcatcc ttatgcaggt
     1861 cgtgatttgc ttttttcttt aaatatcgta gatgctagag ctgcgagtga agatgaaatt
     1921 cttacaggta ttatcgcagg aagtcatagt tgtggttgtg gaagcggaca tggacacgat
     1981 catcatcacg gacatggaca tggtggcggc ggttgctgtg gtggcggcgg ttgcggttgt
     2041 cattaatgaa tgctgcgttt atatttccag gtcaaggctc tcaaagtctt ggcatgggaa
     2101 aagattttta tgaaaactct ataaaagcca aagaactcct tcaaaacgca agtgattttt
     2161 gtaagattga ttttaaacat ttgctttttg aagaaaacga aaaactcaat caaagtgaat
     2221 ttactcaacc cgccatcgtt ttaaattcct taatggctta tagtgtttta cttgaaaaaa
     2281 aacctgattt aagttcgaaa tttgctttag ggcattcttt gggagaattt tcagccttag
     2341 ctgtcaatgg tgcttttgat tttttagagg ctctttcttt ggtcaataaa agagggcttt
     2401 tcatgcaaga agattgtgca aaagttgaag caggtatgat ggtggttttg gggcttgatg
     2461 atgaaaaggt tgaagagctt tgtcaaaaag cacaaaaaga aaacaagcaa attttcgctg
     2521 caaattataa ctgcgatgga caaatcgttg tagcaggttt aaaacctgat ttagcaagtt
     2581 atgaaagtgt atttaaagaa gcaggagcta aaagagctat gcttttaaat atgagcgtgg
     2641 caagtcattg tcctcttttg gaaaatgctt cagctaagct ttgtgtggag cttgaaaagg
     2701 tattaaaacc aaattttaaa gccgtgcttt ctaatgcaaa tgccaaaatt tatacaagca
     2761 aagaagaagc ccttgagctt ttaaaagcac aacttatctc tcctgtgctt tataaacaaa
     2821 gcattaaggc atgtgaaaat gaagtagatt atttcataga atttggcgca agtgtgctta
     2881 agggtttgaa taaaaaaatc acttcaaaag aaacttatgc tttaacaaat atgaatgata
     2941 ttgatgaatt tttaaaggtt gtatgatgaa aatagcaatt ttaggagcca tgagtgaaga
     3001 aatcactcct ttacttgaaa cacttaaaga ttatacgaaa atagaacacg ctaacaatac
     3061 ttattatttt gcaaagtata aaaaccatga acttgtttta gcgtattcta aaattggcaa
     3121 ggtaaattct actcttagtg ctagtgtgat gatagaaaaa tttggcgcac aagctttgct
     3181 ttttacagga gttgcaggtg cttttaatcc tgaacttgaa attggcgatt tgctttatgc
     3241 aacaaaatta gctcaatacg atcttgatat tactgctttt ggacatcctt tgggttttgt
     3301 tccaggtaat gaaattttta tcaaaaccga tgagaaatta aacaatcttg ctttagaagt
     3361 tgctaaggaa ttaaatatca aacttcgtgc aggcattatt gcaacgggtg atgagtttat
     3421 ttgcgatgaa gcaaaaaaag caaaaattag agaaattttc aatgcggatg cttgtgaaat
     3481 ggaaggcgca agtgtggctt tggtttgtga tgctttaaag gtgccttgtt ttatcttaag
     3541 agctatgagt gataaagcag gggaaaaggc tgaatttgat tttgatgagt ttgtgatcaa
     3601 ttcagctaaa atttcagcca attttgtgct taaaatgtgc gagaaattat gataaatctt
     3661 agcaaaaaac tcatacgcca agttgcacaa gctaatgcta aatttggact tattaaagat
     3721 ggagataggg ttcttttagg gcttagtggc gggaaagatt ctttggcttt agcccatctt
     3781 ttaaatcgta tgcaagctca cgctcctttt aaatttgaac ttgaagcggt aactttgagt
     3841 tatggcatgg gcgaggatta ttctcatctt catgcacatt gtgaagaaca tggcattaaa
     3901 catagcgtac ttgattcaaa tatttatgaa gtttcaggcg ataccataag agaaaattca
     3961 agtttttgta gttatttttc gagaatgcgt cgtggagctt tatatactta cgcccttgaa
     4021 aaaggtttta acaagcttgc tatagctcat catttggatg atgcagcaga aagctttttt
     4081 atgaatttta tttataatgg agctttaaga accttagcgc ctatttatca aagcaaacgc
     4141 ggtataactg tgatacgccc tttgattttt gtgcgagaaa gacagcttag ggataatgct
     4201 acgcaaaatg aacttagcgt gataggaaat gaattttgtc ctggtatgaa actcaacgaa
     4261 aaaaatgtaa aatttccaca cgctagagaa gaagctaaac agcttttagc aaatttagaa
     4321 aaagatcatc ctaagctttt tacaagttta aaaaccgctt ttgccaattt acacttggct
     4381 tcaaaaggca taaaagcatg aaaaaagctt ttgttttagt ggattatcaa aatgatttta
     4441 ttgatggaag tttaggtttt gataaggctt taaaaatcaa agaaaatatt cttaaagcct
     4501 taaatcaaat cgattttaat aacacgcatt tacttttaac ctatgatacg cacgatgaac
     4561 attatctaca aagcaaagaa ggtttaaatt tacctgtaaa acattgcatt aaagagagtt
     4621 taggttggca aatgccaaag gaatttgaac cttttttaca aaaagctcat aaaatttttt
     4681 ataaaaatac ttttggtagc ttagaattag ctaatttcat acaaaaaagt gattatgaag
     4741 aacttcattt tgcagggctt gtttctcata tttgtgtgtt ttgtaatatc attttagctt
     4801 ttggtgctaa gcctaatgca aggataattt tacaccaaaa tttaagtgca agttttgatg
     4861 aaaatttaga aaaatccgct tttgatatac ttagggctta tggtattgaa attgtttaat
     4921 gcaaggcttt atatttcata ctcaaaaagt taaagatgag gatttgatcg tttatatttt
     4981 aagtcctaaa atgcttatta aggcttatcg tttttatgga cttagacatt ctagtatttt
     5041 aagcggctat aaaatcgatt ttgctttaga agaaaatcct ggttttttac caagacttaa
     5101 agatgtattg catttgggat ttttatggat tatgcaaagg gataaaatgc ttatttggca
     5161 agagtttatc cgtcttttat ataggcattt aaaagatgta gaagagcttg atagttttta
     5221 ttttgattta cttgatgagt gtgtgaaaag gtttgaaaaa caaaatccaa agcgtgttat
     5281 tgttgatgct tatttaaaaa ttttggaatt tgaaggaaga ttgcataaag attttttttg
     5341 ttttgcctgt gatgagaaaa ttcaaaattc cattacattg ctaagggctt ttttaccttc
     5401 gcattctcaa tgtgctttag gatttgagtt tgaagagaaa aaactaaaac aattttatag
     5461 tagtaaaaat tgtgcgattt ttgatgatga agaaatagaa aatttatatc atttgattaa
     5521 ggaaggttta tgatattaag tgatgaaaaa tgtgattttt tagaatctat agcaagtttt
     5581 ttaagtccta aagatgtgga gcttgtcttt gtggatagta aagaaatgca agaaattaac
     5641 ttagagcaaa gaaaacaaga taaaaccact gatgtacttt cttttccact tgaaaatatc
     5701 gatgagagtt tgcctttggg ttctgttgtg atcaatgtgg atttggcaaa agaaaaggct
     5761 aaagagttag ggcatagcta tgaagaagaa ataagcttgc tttttatcca cgctatgctt
     5821 catttgttag gttttgatca tgaaaatgat aatggagaaa tgagagaaaa agagaaagaa
     5881 cttatagagc attttaattt acctaaaagt ttgattgtaa ggactttgga agattaagta
     5941 agattttttt caagggctag aagacttgcg ctttatattt taaatatatg agtaaaaata
     6001 ttaaaaaaaa tcatttttgc cgatttactt tagaataaaa tttattccaa ggtgataaag
     6061 atgatagtat ttcctctaag ctcttttaat agatattttg gaaacaatcc tttgcaaaca
     6121 cttaccaaaa taagagatga aagtattgaa aatggaaatc ccgagcttac aaaaaaacaa
     6181 agagaagaat taggtaatga tttgatagat ttgtataaga tttctaaaaa attcagcgat
     6241 aaaatagaat tagtcgaggg ttcaatagaa gataagctta gaaacaatga attaccagaa
     6301 tcagaagtta aaaatttatt tcaatggatg gatgaaaatg ctaaacaccc tcgttggatg
     6361 catattgatg gcgtgagtta tgatgaagct tatgttaaaa tttttcacac aagcaaaagt
     6421 atagatgaat ttaaagaaaa atatcttgag cttcaaaaaa aatattttgt tgattttaac
     6481 aatattgatt catcgcagaa aaaactgcaa gaaacttcag aagaagacaa aaaagctttc
     6541 aaacctatac aagtagaaag taaaagcgaa acctacaaag atgataataa aatgaatgag
     6601 cttttaagaa aactactaga aactaaattt ggcacaagcg atgagctaga aattcttttt
     6661 ggtatgaatt ttagcaatga taatgcaggg gaatttaata aaattctttc tcaaaacact
     6721 tcagcaaaaa ttatagatat taaggcttaa ggttttttaa ttataaaaat cgattaagct
     6781 aaactaaaaa attcttctat tttttttcgc attttttctg tattgtcgat acgattgact
     6841 tcatctctaa aggctgaagc gtctttgtgt cctttagaat actcgtgtaa atgcttgcga
     6901 aatatactta cgccttgatc tttgtagtgt tttatcattt catcaaaatg agtgagtatg
     6961 atttcttttt tgagtttttc atctacactt ttaccgcttt tgatttcata aaatatccaa
     7021 ggatttccta cgcttgcacg ccctatcatg agtccatcac attttgtgat tttataaact
     7081 tctttagcgt tttgtgcgtt aatatcgcca tttgcaatca caggaatttt cacgcttgct
     7141 ttagcattgg caatggattc ataatcggct tttccgctat aaagctgttt tcttgtgcgt
     7201 ccatgaatac ttacaaaatc cacccccaag ctttcgcaaa ttttagccat tttttcagga
     7261 tatttttcat taaatcctag tcgaaatttc acacttgtaa ggcttttttt attgttttct
     7321 ttaatcactc ctacaagatt tttaaaaagc tctaaatttt ctagcaaagc actgccagca
     7381 cattgtttaa caactttatt tacaggacaa ccgcaattaa aatcgatccc atctacaaaa
     7441 tccatttcat ttagcatttg cactgctttt tttagcactt ctttatctcc acctgcaatt
     7501 tggactatat agggattttc taattcagct ctttctagca tatgtaaagt tttagaactt
     7561 tcataaacta aggcattaga acttatcatt tcacttatgg taatatcagc accaaatttt
     7621 tttactacat tacgaaaagg cagatctgaa aaacctgcca taggggctaa aaacaggggt
     7681 tttttgctaa aatctatcat tgtatgagtt gatttagatc gattttgata tttttttcac
     7741 gcaaggctaa aaaggcttta aaatcattaa attttttatc atcattgtga atttgttctc
     7801 ttaactcatc taaaagtcca aattcagcca aaagatataa atatgctctt aaagcttcgc
     7861 ttttttcatt tttaattttg ttaaaaattc ctaaaatagc atcaggattt aaaagtttag
     7921 tacttagttt tgctgcgtta agatagtctt tttcgcttaa tatgttgtgt gaaagtaaaa
     7981 cttcatattc tgctacacta agttctaaat ttccttcttt aaaacgcttg ataagtgtga
     8041 gaacttcaga aggcttttta gggattttta catttttaat ttgctcataa ctagcttttt
     8101 ctataagagt gttaaaagca atttcttcaa attcatcttt gatttcatta aggtttttaa
     8161 gtttgttata ggcataattt gcatcatttt tgagatgatt tttttcattt tgcaaatata
     8221 aaacattgtt attttcgagt ttaaatttgc taaggttaaa aaattcgttt ttatttaaac
     8281 catcaataag atctaaaatt tcattgattt tatttgagtg tggaattttt tcatgtgttt
     8341 ttatggtttt aaaaagttgt gctacagatc taaattcttt tgtttgaaaa gtggttttaa
     8401 gatctttttc aaggagtaaa tcttgagtat aagcttcaaa tttagctgca tctttaaaaa
     8461 aatgcttaaa ttttaaataa cgcaaaaatc cataaaatgc tatgtgtaaa atggctaaaa
     8521 tcatataaat aaataaagga ataacaagcc atatcataat aggtagttca aaggtataag
     8581 tgctgatatt tagagtatag cttcctagtt ctagatgcca agcaaaggca aaaataagtg
     8641 ctatataaat aaaacttgca agtaagaaga gtttaatttt catgtttttt tccttgttct
     8701 gcaatttgac ggcaagtgat acaatatctt gcgtgaggtt tgacttttag tctttgagag
     8761 tcgatttcat catcgcaaga ttcgcaaatt ccataagtgc cgtttttgat tttatctaaa
     8821 gaatcttcga tttctataag ttcttctttg agattggtgc tgatagcaaa gtcaatttga
     8881 gagcctgttt ctatgacaga aaaatctaca ctatcgcttg ggacgctatt gtgaagagct
     8941 tcgatttcat ttgaattgct ttgcaaattt tctaagatag ctttttttct ttcttctaaa
     9001 atatttttga aattttgtat ttcatttttt ttcattttaa aactttctat ttgtgataag
     9061 ggtgattgtt gttgatgcaa aatgcacgat aaatttgttc taaaagtaag gttttaacaa
     9121 attgatgtgc taaagtaagt ttgcttaatg atagtctaaa atccaaactt tgattaaatt
     9181 cttctcttaa accataagca cctcctataa aaaaacttaa ttcattttta tcttggatga
     9241 gttttgcaaa ttctatactt gtaagatctt tccctttttc atcaagagcg atacaatagc
     9301 cttttttata aggcataaaa gcttcttcat agcttttttt tgcttctatg gcatttaaat
     9361 tttgagctaa ggctattttt ttattaaaaa catttatttc ttttaaagtg gcgtatttgg
     9421 agatgagttt agagtatttc tcactacaag ttttaaattc atcacttttt tgaatacaaa
     9481 agatattaac ttgcaaatta ttttccacta aaaaatttta gtacatcgct aagatattgt
     9541 ttttgttctc ctctttcaac tatggcatct ataagtccat gttctaacaa gaactctgct
     9601 ttttgaaaac cttcaggtaa atctgctcct atagtttgtt taataactct tgcaccagca
     9661 aaacctacta aagcttcagg ttcagcgatg attaaatctc caagccaagc aaaagaagca
     9721 cttactccac ccatagtagg atcggttaaa atgctaatat aaggaagttt ttctttgcta
     9781 agaagtttaa gtgcagcact agttttgctc atttgcatca aagaataagt actttcttgc
     9841 attctagctc caccgcttgc acttacgatg acaagagaag ttttgcttgt gatagctctt
     9901 tgtatagctc taacaatttt ttctccttca acagaaccta aagatccgcc cataaaagaa
     9961 aaatcaaata caacaagttg ggtttttaaa ccattgactt cacattctcc gctgatgaca
    10021 gaactttttc tacctgtttt actttcacct tcgctaaggc gttttttata ggatttgcta
    10081 tcaacaaatt ttaaaggatc tatagcttct aaatttgcat catactcaat aaaactgcct
    10141 tcatcgctta aaagtttaat acgttcatca gctgaaattc tcatgtgata attacattta
    10201 ggacaaacat taaaacaaga ttctatttct ttataataca tcaaagcatg acaattttgg
    10261 cattttaccc agtgatttgg agcttcttta atactaggtt gttgtcttct tatttttgaa
    10321 aaaatatctg caaaattcat atattcacct aattattttt taaaaattct aagattatat
    10381 caaaaatttt tttgtcttgg cttaggagaa ggaaattttc atttttttct atatataaat
    10441 tttgatgaat tgctaaagca gctgctgtat caaaaattcg tgtttttcca agaattaata
    10501 caaaactaaa atacgaagca taagcaagac ttaaggctgt tgcacccaaa gagcgaaatt
    10561 ttaattgatt ttttgttaaa aaatcgagaa gttctggata aaatgaaatt ttttcaacta
    10621 tacctatttt aggaaataga ttaggtgtta agggtgagta ttttggatcg gaaagattag
    10681 atttaaaagc ttgattgttc ttaaaagcaa aaatttcttg actgacaaga ttgcaaacaa
    10741 aagcactttt tgcctgatct ttttccataa gagctataga agttccataa aatggtattt
    10801 tagaaacaaa atttgaactt ccatccaaag gatcaagaat catttgtttt gggctagctt
    10861 ttccgatcaa tccgctttct tcagaaaaaa tttgtccaaa acaactaaga tattttatga
    10921 aaatttgttc acattttaag tcaagctcat agccttgatt tttatcatag cctaatttag
    10981 agcaaagttt aagatcattt tgtgggatat tgtttagata cttgcgtatt tgcaaatttg
    11041 cattcaagca agcatctaaa aattctttca ttaaaagcgt gttccaagat taaattcaaa
    11101 actattagta tcatcacctt ttttatcatt aagaggtttg gcaaatacaa gttgtaaagg
    11161 tccaataggt gtaatccatt caatgcctat acctgtactc attcttttta tttcatctaa
    11221 atttttacgc cctatcatac cataatcaaa aaacacgcta ccacgaagtt tgattctatc
    11281 aatcaaagga aaactaagtt ctacggaatt ggcaaaagct atggttccgc ctatttcatc
    11341 tccccattga tttttaggac ttactgttct gctttcaaaa ccgcgtatcg atctaatacc
    11401 acctaaataa attctttggt taattggtaa ataaccttca tcccatactt tataaaaact
    11461 cgctttatag cgataaataa gatcatatcc tatatagtct tgcaaacctt gataaaagtt
    11521 aaatttagag cttgatgaaa taaattcttg atctccgcca agtccagcgt attctaaact
    11581 agttgaagca ataatacctg atcgtggcag ataataatca tctgtattgt taaaggtgat
    11641 tgctggagtt atagagcttt taatactttt gccaagttca tatcctgttc ttaaaagagt
    11701 tggacttaag tgatatatat cgctttgttc aagattataa gttaagctta cattatagta
    11761 tcttgcaaat tggcgtccaa ctgttatatc aaagccgtaa tttttttctg aataattatc
    11821 ccattcatag tcatttgaat aaagtgttcc acccagacta tattgactat caagaacgcg
    11881 tggatttacg agactaatcc ttcccgataa agtatcatcg cttttatcta cgcttacaga
    11941 gctttttatt cctgaaccaa agatatttgt atccgataaa gaagcgttaa gcaaaatacc
    12001 atcgcttgat ccatagccaa tgcctccaga aatagctcct gtagaagctt ctttaacatc
    12061 aacaatcaaa tcaatatgtg tatcatcaac tttttcttct ttgatattta catcgtcaaa
    12121 ataagaagtt ctttttaaag cattttttga ctcgcttaag tctgttctat tgtataaatt
    12181 accttctgtt atatataatt ctcggcgtat gacgcgatct acggtgcgtg aatttcctga
    12241 aataataaca tttcttatat aaactttatc gtgagggatt actttaaata caacggtggc
    12301 ttcttgagtt tgatcatttt tttgaatatc aggatagact tctacaaacg cataacccaa
    12361 atcagcactt tgtgtttcta tggttttaac atcttttcta atgtcttcga tattgatagt
    12421 tttgccagcg cttgatctta aatcttttac ggtttgtgca ttttgcttat catcaaataa
    12481 aggattttct atgcttatac ttttaatttt ataaggcttt ccttctttga taaaataagt
    12541 caaatttgct tgataagtat ctgtgtaggt tttaagataa ggggaggata cttgaacatc
    12601 taaatatcct tttttcatat attcatcagc aattcttgaa ctatcgttac taagttcaaa
    12661 aacttttaat tttccatcat tgcgtcccca catccatccc ataaattctt tttctttgtt
    12721 aacaacagca ggttctatat cagaatatga aaatttcttt gctccactta aatgaacatt
    12781 atcaataatg atattttcac cacgatttac tataaattca agctctagtc catcagtatt
    12841 ttctaaagtc ttttttttgt attctacaat agtatcaaaa taactttttg cttcataata
    12901 agctttaatg cgttcaatag cttcttttat acttccttca tcaagtagtg tacctctttt
    12961 aatccctaaa atactttcaa cttgttttct atcattggaa gctatacctg ttatactaac
    13021 ctttgctata gttggttttt cagtaactat aatttccaaa attccattgt tgttttctac
    13081 tgcaatattt tcgaaataat tttgtttata aagattaaga atagcagtgt tgatttttgc
    13141 aggatttatt tcctcgccta ttttaagccc cgcgatattt atagcgcttg tgttcgataa
    13201 atgatttaat ccgataaatt taatattttt aatggttgct gcattggcca tagcaactaa
    13261 agcacaaata ctaataagat gttttttcat tgatttttta cctaaagctt tattaaaagc
    13321 tgtataatag caaaaaaaat ttaacaaaaa aactaaggta gaaagtatga aaatagcaat
    13381 tatagggctt gggcttatgg gtggatcttt agggctttgt ttgaaagaaa ataagcttat
    13441 ttcttgtgtt tatggtatgg atttaagcaa agaaaatgaa aaagatgccc tgcaattagg
    13501 tcttattcat gagcttatag aatttaaaga tttagcttta tgtgatatga tttttgtcgc
    13561 aactcctgtt gatgctatta tagaaatttt acaaaagtta gttgatttgc cttctaatgt
    13621 aacaattata gagcttggaa gtacaaaaag aaaaattata gaaagtttgc ctaagaattt
    13681 aatcaaacaa actctttttg ctcatcctat gacaggaact gaaaattcag gtccaaaagc
    13741 agcttttaaa gagctttata aagatgcagt ttgtgttctt tgtgatagtg aaatagctga
    13801 tgatttacat caaaaaagag cggtagaaat tttttctcat ttagggatga aaattgtttt
    13861 tatggatagt aaagcccatg atcatcatgc tgctattatt tctcatttgc ctcatgttat
    13921 aagtttttct ttggcaaatt ttgtaatgaa ggaagaagat aaaagaaata ttgttcattt
    13981 agccggagga tcttttaaag gtatgagcag aattgccaaa tcatcgccac aaatgtggga
    14041 aagtattttt ttacaaaata aagataactt attaagttct attgattttt ttcaacaaga
    14101 attagagaga tgtaaacaaa tgatacaatt agacaaaaac gatgaattaa gagaatggat
    14161 gaaacaggct aataccctaa gagaaatttt ataaatttgc tagatattta ctgaaaatat
    14221 aatagaattt atattaaaag caacaaaaac attgaaaatt tttaaggaag gttatggcaa
    14281 aaagaaaagg caaaacttat ttatctgttt taattttagt tttaatagca attttgattt
    14341 tttttatttc aagattaagt atttttgaaa aaaatcctcc tcaaatttta atgccagatg
    14401 ttgtatatac tgatcttaaa aaacctattt tagtgcatat taaagatgat gaaagttcta
    14461 tcaaaaacgt acaaattata ttgcataaag acgacaatac tagtgcaatg gttatagcag
    14521 atgaaaagat ttctaattta aaagatatta ccttacaagt tgctttgcca aaatttggtt
    14581 acaaagaaaa tgtaaaatct tttgttttgg aggcgatagc taaagattct agtttttgga
    14641 atttttttag tggcaatgaa gcaagaaaac aaattgcggt attagtagat aatacggctc
    14701 caaaaatcaa tatcataagc aattcttacc aaatcgagca aggtggtgct ggggcagttg
    14761 tttttaaggc tgatgatgct aatttagata aggtgtatat agaaacaaat aaaggtaaaa
    14821 tctttaaagc cacaccttat gtaaaagaag gatattatgc ggctttgatt gcttgggatg
    14881 caagagatga ggaatttcgt gcatttgtta tcgctacgga taaagcgggc aatatttcaa
    14941 aagaacgtat aaggtattat tttgttaatc gtaaatatcg tgtttcaaat atcaatctaa
    15001 cggataaatt tttagatgga aagattgaga atttagcaaa tcagtacgct ccaaaagata
    15061 ataatctcaa tcgttatgaa aaatttaagt ttgtcaatga aactttaaga aatagcaatg
    15121 aaaaacttat ccatgaaatc acttcaaaag tacctgagga aaaaattgat aattttgatt
    15181 tgaatttatt tttacctctt aaaaatggta tgaaagtagc ggattttgct gatcataggt
    15241 attattctta taatgggcaa tttgtgagtg attcttatca tatggggctt gatctagcaa
    15301 gcgtagcaca agctcctatc ataagtaata acgcaggcaa ggttgttttt gctgctgaaa
    15361 atggaattta tggtttaaat ttaattgttt atcatggttt tggagtatat agtctttatg
    15421 ggcactgttc ttctaaaaat gttgatttag atgaaatgat taataaacaa agcattatag
    15481 gcaaaacagg aacaagtggt ttagccttag gcgatcattt gcattttgga gttttggttc
    15541 aaggggttga aacgcgtcct gaacaatggc aagataaaaa atggatagaa aataatattt
    15601 acaatgtttt aaatgatggt aaaaagataa ttttaggaaa aaattaatga aacaattaac
    15661 tttagcaaaa actgtcaaag gcgtaggtat aggacttcat aagggtgaac ccatagaaat
    15721 tactttagag cctttagaag caaatagtgg tatagtattt tttagaagtg atcttaatgc
    15781 aagctataag gcaagtcctg aaaatgtgat caatactcaa atggcaactg ttttaggaga
    15841 tgaaagaggg tttatttcta caatagagca tttaatgagt gcgattaatg cttatggaat
    15901 cgataatgta cgcattgttt taaatgcaaa tgaagctcct gttatggatg gatcaagtat
    15961 tagtttttgt atgatgcttg atgaagcagg ggtaaaagaa cttgatgtgc ctaaaaaaat
    16021 tatggtaatt aaaaagccta tagaagtaag agatggtaat aaatttgtgc gtttaactcc
    16081 tactaaagaa ccccgtatta attacacaat taaatttgac aatgctgtca taggtgaaca
    16141 aagttacaat tttgaattca gcaaaaaaaa ttatatagaa aacatagcaa gggctagaac
    16201 ttttggtttt ttaaaagatg ttcaagctct taggagtatg aatttagcac taggtggaag
    16261 tttagaaaat actatagtag tagatgaaaa tcgtatttta aatcctgagg gtttgcgttt
    16321 caaagatgag tttgtaagac ataaaatttt agatgcaatt ggagatttaa ccttacttgg
    16381 atatcgtgtt tttggagatt atacttcata tgctgggagt catcatttaa atcatttact
    16441 tactaaagaa gttttaaaag ataaagatgc ttatgaaatt gtaagccttg aaaaaacaac
    16501 ccaaaaagct tatgaaaagg tatttgcata aaaacttctc ttttacttaa tactttatct
    16561 aagcctttaa tgatcggaat ttatcaagat gataaactta taaaaactta taaaagtgaa
    16621 gaaaaagcaa gcgaattttt accaaaaatt ttagatgaat tgcttaaaga atatgatttt
    16681 acaagtttaa tctatgctaa tggtccaggt tcttatatgg ggattaaaat ttcttatgta
    16741 agtttgagta ctttaagtat agtaaaaaat attcctttat ttgcggtgag tgcttttgaa
    16801 ttaaatggct ataaacccat aagtgcaaat aaaaattttt gttttgtata taaggaaggt
    16861 gaaatttgtt tagaacaaaa tatcccagca gagttttttt taccaaaaaa tttacaagag
    16921 cttaaactaa ataatgataa tcttcccttt tattttttag atgcaattta ggatgaaatt
    16981 tgaaaatttt agttccagct acgagtgcga atttagggcc aggttttgat tgtttaggac
    17041 ttagtttaaa gctttttaat gaaactcaaa tccaaaaatc aggtgttttt agcattagta
    17101 ttggaggcga gggaagtgat aatatttttc ttaaaaaaaa caatatattt gtaaatattt
    17161 tttatgaaat ttatgaaaaa ctaagcggaa aaaaagataa ttttcgtttt atttttcaaa
    17221 ataacattcc tctttcaaga ggattaggaa gctcttcagc tgtgattgtt ggagctattg
    17281 ccagtgctta ttatatgagt ggatttaagg tagaaaaaga acgtatttta gatgaagctt
    17341 taatttatga aaaccatcca gataatatcg ctccagctac tcttggtggt tttgtgtgtt
    17401 ctttggttga aaaaaataaa gtttatagta tcaaaaaaga gattgataaa gatttagctg
    17461 ctgtggttgt gatcccaaat ttggcaatga gcacggaaca atcacgccaa gctttggcca
    17521 aaaatttaag ttttaatgat gcggttttca acctttctca tgcttcattt ttaaccgctt
    17581 gttttttgga gaaaaaatat gaatttttaa aatttgcaag tcaagataag ctccatgaaa
    17641 tcaatcgtat gaaaaactta cccgagcttt ttgaagtgca aaaatttgcc ttagaaaata
    17701 aagctttaat gagcacactt tcaggttcgg gatcgagctt tttttcttta gcttttaaag
    17761 atgacgcttt agctttggca aagaaaatac aaacaaaatt taaagatttt cgtgtgcaat
    17821 atttagaatt tgatgataat ggctttgaaa tttgctaaaa aatataaaaa aaagatataa
    17881 ttttgaaaaa acatatacca attagaatgt gcatagtgtg taaaaaccgc tttgagcaaa
    17941 atatgttatt tagatttaaa gttgttttag gagatattgt gcctaaagca gaacatggaa
    18001 gaagcggata tttatgtcaa aattgtattg agagagaaga taaagtctta caaaaagcat
    18061 tttctaaaat atgtaaaaat ttaaatacta aaattactca gcaaggactt aaggagatat
    18121 ttttaaatgg caaagattag aattcatgaa atcgcaaaag aattaggtta tgatagtaag
    18181 gaaattattg aaaaggcaaa tgaattagga cttggaatta aaacagcatc aaatgctgta
    18241 gaacctgaga ttgcggcagc tatttatgag tatatacaaa caagagaaat tccagaagct
    18301 tttaagaaaa atatcaaaac tcctacggca aaaaagccta aaaaagaaaa tataaaagaa
    18361 caagaaaagc taaatgaatc tgaaaaaaaa gaacctaaaa aagaagaaaa gcttaaacaa
    18421 gaagttaaaa aagaagaatt aaaaattgaa aaagaaaatg caaaagagga agaaaaacaa
    18481 gaaattattg atgctcataa gccacaaagc cttgctagtg caactttagc caaaagacgc
    18541 ggacttgtta ttgttaaaaa gaaaaaagac gaagaagaaa ttcaagttaa aaaagaagaa
    18601 gtaaaaaatt caaatgatat atctatcaat aatgaagagc gcttaagttt aaaaactatg
    18661 ttttcaaatg ctgatgagag tttaaagaaa aagaaaaaag aaaaaaaatc ttttgttgcg
    18721 agtaaaaaag aaagtaccga aaaaatgaat tttttagatg aacatgattt tggtgatatt
    18781 tctttagatg atgaagatga ggtagtatta cctgatttta gtgtaaaaga acaagaaaaa
    18841 ccacaaaata tcaataaaaa acaacctaat tttataagac aagctgttgg aaattctgcg
    18901 ggttttgggc ttgaaggtgg aattcaaaga agaagtcgta aaaaaccatc taaaaagatt
    18961 gaaaaaaagg aagtagaaga agtaggtagc gttgctattt ctaaagaaat tcgtgtgtat
    19021 gaattcgctg ataagatagg aaaaagcact agtgaagtga tttcaaaact tttcatgctt
    19081 ggaatgatga caacaaaaaa tgatttctta gatgaagatg cgattgaaat tttggctgct
    19141 gaatttggta tagagatcaa tatcattaac gaggctgatg agtttgatta tgtaaaagac
    19201 tatgaagaag agactgatga aaaagattta gtgactagag cacctgtgat taccatcatg
    19261 gggcatgttg atcatggtaa aacttctttg ttagattata ttagaaaatc acgcgttgca
    19321 agtggagaag cagggggtat tactcagcac gtgggtgctt atatggtaga aaaaaatgga
    19381 cgtaaaatta cttttattga tactccaggt cacgaagctt ttactgctat gcgtgcaagg
    19441 ggtgcaagta tcactgatat tgtaatcatc gttgtagccg cagatgatgg ggtaaaacca
    19501 caaactaaag aagcgataaa tcatgctaaa gcagcaggtg tgcctattat tattgctatt
    19561 aataaaatgg ataaagaagc agcaaatccc gatatggtaa aaactcaact cgcagaaatg
    19621 gaaatcatgc cagtagaatg gggcggatct tatgaatttg taggagtttc ggctaaaaca
    19681 ggaatgggga ttgaagattt gcttgaaatc gtgcttttac aagctgatat tttagaactt
    19741 aaagccaatc caaaaagttt tgctaaagca agcattatag aaagttctgt gcaaaaaggg
    19801 cgtggtgcgg tagctactat tatcgtgcaa aatggaacac ttactgtagg aagtactgtg
    19861 gttgcaggcg aggcttatgg aaaagtgcgt gcgatgagcg atgatcaagg taaagcttta
    19921 aaagaaatca aaccaggtga atgtggggtt atcgtaggac ttagtgaagt agcagatgca
    19981 ggtgaaattt taattgcagt aaaaaccgat aaagaagcaa gagaatacgc taataaacgc
    20041 cacgaataca atcgccaaaa agaacttagt aaatctacta aagttagcat tgatgagctt
    20101 ggagctaaga ttaaagaagg caatctaaaa gccttgcctg ttattttaaa agctgatgta
    20161 caaggatctt tagaagcctt aaaagcaagt ttagaaaaac ttagaaatga tgagattaaa
    20221 gtgaatatca ttcatagtgg ggtaggagga atcacgcaaa gtgatataga gcttgcaagt
    20281 gcgagtgaaa actctatagt attaggtttt aacatacgcc caacagggga agttaaagag
    20341 cgtgctaaag ataaaggcgt agaaattaaa acttataatg taatttataa tcttttagac
    20401 gatgtaaaag ccttacttgg tggtatgatg agtccgatta tttctgaaga gcaattagga
    20461 caagcagaga ttagacaagt gattaatgtg ccaaaaatcg gacaaatcgc aggttgtatg
    20521 gtaactgaag gggtgattaa ccgtggagct aaaattcgcc ttatccgtga tggagttgtg
    20581 gtttatgaag gcaatgtaag ttcactcaaa cgctttaaag atgatgctaa agaagtggca
    20641 aaaggctatg agtgtggcgt aggtatagaa gggtgtgatg atatgagagt gggtgattat
    20701 atagaaagct ataaagaagt agaggaacaa gcaagtctat gaacccaagt gagattaaaa
    20761 aactacgcac tgaaagtatc ttaaaagagc tgatccctga agctttagca aatttagatg
    20821 atgaaaattt gaaaaatttg tgtgtagtgg atgtagagtg taaaaaaggc agatacgatg
    20881 cttttgtgta tcttgataag atgtttttta atgttcatga gcaagaaaaa attttatctt
    20941 ctttaaaaaa ggcaagtaga gctttgcaaa attactgcat gagtgagcag ggttggtata
    21001 ggtgtccgaa ttttcatttt aaatttgatg atagacttga gtatcaaaac catatggatg
    21061 cactttttga aaaaataaaa aaggataaaa atgaatcttg aagccctttg caaagaagca
    21121 ggacttagtt tttatgatga tgagctagta agtgaaaatg gcagaaaaat ttatagaatt
    21181 tatgtgcaaa aagaaggcgg ggtaaatctt gatgattgtg caagacttag tgaaatttta
    21241 tcgcctattt ttgatgtaga gccacctgta aatggggagt attttttaga agtatcttca
    21301 ccaggacttg aaagaaaact tagcaagata gaacactttg ctaaaagtat aggtgaactt
    21361 gtgaagattg caaccaatga aaaagaaaaa ttcgaagcaa aaatcattgc tgtagatgat
    21421 gaaaatatca tcttagaaaa tttagaaact caagaaaaaa ctactataaa ttttaatgat
    21481 ataaaaaaag ctagaacttt cattatatgg taaaatttag ttttacttat ctttttgaat
    21541 taaagtcta
//
LOCUS       DBBXPZ010000023        20607 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.023, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000023 DBBXPZ010000000
VERSION     DBBXPZ010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20607)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20607)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20607
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.023"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..1157
                     /gene="ftsW"
                     /locus_tag="ACJFD7_000702"
     CDS             <1..1157
                     /gene="ftsW"
                     /locus_tag="ACJFD7_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HGG0859542.1"
                     /translation="DKRLFYLSCILITIGIVFSYSLTAFTVLFLDYSEFHFFIRQLFF
                     GISGILIMFFISRLDPDKALSKKIILAILIISFIFIIILPFLPSALATASGGAKRWIR
                     LGPLSISPVEFFKIGLIYFLAWSYTRRIDDSKKAIRHEALILLPYCILASIVIGYIYI
                     TQNDLGQSVISFFLILALAFFAGASKRLFAFGTLIIMMIGIMVIFSNQRRIQRIASWW
                     GNIQDAFLPMLPDWLANALRVSSNSEPYQISHSLNAIAHGGMFGEGLGLGTFKLGFLS
                     EVHTDFVLSGITEEIGLLGLGVICYIYLWMILRIFRIAGRCEAKQDFIFCSGIALLLL
                     FSFFMNAFGIISLTPLKGVAVPLLSYGGSSMWAICIGIGYVLVISKKVKL"
     gene            1154..2182
                     /gene="murG"
                     /locus_tag="ACJFD7_000703"
     CDS             1154..2182
                     /gene="murG"
                     /locus_tag="ACJFD7_000703"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050511 -
                     undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HGG0859543.1"
                     /translation="MTIALTGGGTGGHLAIVRCLLESAIKKNIECVYIGSQNGQDKAW
                     FENEVRFKEKFFLSSKGVVNQSKFDKISSLLHTLKLSKDCREIFKKYHIQAVFSVGGY
                     SAAPASFAALFSHLPLFIHEQNSKSGSLNMLLKPFATKFFSAFEKEISPYPVADKFFD
                     NARIRKELKNIIFLGGSQGASFINELALNLAPKLQEQNIKIIHQCGKNDFEKCKKHYQ
                     SLNIQADIFDFSLNLEEKMKNADLAISRAGASTLFELCANTLPTIFIPYPYAAKNHQY
                     FNAKFLQDQALCQIFMQNSINLDEFFKSILKLNLENISTRLQNITQKNGADMLIQKAL
                     FDNLTFIR"
     gene            complement(2153..3285)
                     /locus_tag="ACJFD7_000704"
                     /pseudo
     CDS             complement(2153..3285)
                     /locus_tag="ACJFD7_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344435.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(3293..4144)
                     /locus_tag="ACJFD7_000705"
     CDS             complement(3293..4144)
                     /locus_tag="ACJFD7_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HGG0859544.1"
                     /translation="MKKYVLSLALLGSLLGASELKYQEFDGFKSPESIFVDKNYVYVS
                     NVGEKLEPLAKDNDGFISKLDKNGKVLEYKFLTHLNAPKGMMEIGKTLYVVDIDVLRG
                     FDLKTKKEIFNLPIKGAIFLNDIEKLDDNTLLVSDTGTGLILKVDLKTKQYDELLKLD
                     LAKFGGPNGLYLDRKKHKLFITGYHPDGVSGGVVMAYDLNTKELSIIKNEKESYDGIV
                     PYKDGLLVSSWGNNLNGYIYNLDNVKSVKLELPLMKGPADIFIEGNILWIPKMVEGKI
                     FKVELNK"
     gene            complement(4207..5097)
                     /locus_tag="ACJFD7_000706"
     CDS             complement(4207..5097)
                     /locus_tag="ACJFD7_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HGG0859545.1"
                     /translation="MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQTDTSHSTFVNVG
                     SHLLTFVRKGYKILHTASKDYKINSYETLFLKAGSYTLSNVGLSKGVYEAYLFFFDNA
                     FLIELIYKYKDFFKLDQKFQNYEIFWVKNDKILQGILESFSPHFEENTQILDPIVSLK
                     FEEIFLHLLLNKNIYFISFLSGILKEFRLDLSQLFEYCGREFLSVNEMSNFAKLDLAT
                     FSKEFKKCFGQSPKKWLDEKRLQKAKILLKFSKKNINEIANECAFSSAAWFIERFKEK
                     YEQTPKQYQKTKNLYFLSKN"
     gene            complement(5094..5699)
                     /locus_tag="ACJFD7_000707"
     CDS             complement(5094..5699)
                     /locus_tag="ACJFD7_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HGG0859546.1"
                     /translation="MWDKKIIAISDRKCVEIDFLKQIEKLAKAKVDAIVLREKDLSEF
                     EYYDLAKEVLSICAKQKVTCFLHFFDRECLKLGHRYFHAPLSLLRKEPKLTKYFHILG
                     TSVHSKEELLEAMSYKVNYAFVGHIFESSCKMGLEPKGIDFLKSLLEFSQIPLYAIGG
                     INAQNIENFKDINVVGVCMREILMKEKDLKKYLLECRQNLR"
     gene            complement(5689..6834)
                     /gene="thiH"
                     /locus_tag="ACJFD7_000708"
     CDS             complement(5689..6834)
                     /gene="thiH"
                     /locus_tag="ACJFD7_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HGG0859547.1"
                     /translation="MQDYMQHLPHMQEIKSEILNKVLSQVQSYDESQFSAKDVKNALN
                     QTHLSIEHLKALLSSAAEDFIEELAFKSAKVKQKYFGNSISLFTPLYLSNYCNSKCVY
                     CGFQKGNKIARAKLNEAEIHEEMQAIAKSGLEEILMLTGEGREFASVEYIANACKIAR
                     EYFKVVGVEIYPMNEDEYKILHEKGCDYVTVFQETYNPLKYSKIHLAGEKRIFPYRFN
                     AQERALKAGMRGVAFAALLGIDDFRKDALATALHAHFLQQAYSHAEISISVPRLRPII
                     NNAKIHPKDVSEKRLLQVLCAYRLFLPFAGITISSRERIGFRDEVIKLGATKMSAGVS
                     VGIGEHKGEKKGDEQFEISDDRSVDEILAMLKRSNLQAVMSDSIYVG"
     gene            complement(6837..7613)
                     /locus_tag="ACJFD7_000709"
     CDS             complement(6837..7613)
                     /locus_tag="ACJFD7_000709"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990107 - thiazole synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HGG0859548.1"
                     /translation="MQENLKNDKLKIGKYEFDSRFILGSGKYSLELIKSAIEEAKAQI
                     ITLALRRANTGEIANILDYIPKNITLLPNTSGARNADEALRIARLSRELGCGELIKIE
                     VISDSRYLLPDNYETIKACELLAKEGFTPLPYMHADLYAARAMRDAGAAAIMPLAAPI
                     GSNKGLCAKEFIQILLNEIDLPIIVDAGIGSPSQACEAMQMGVSAVMVNTAIAEAKDI
                     ALMARAFSLAVNAGRAAFLAGVASVSEAKASSPLTGFLRD"
     gene            complement(7616..8419)
                     /gene="thiF"
                     /locus_tag="ACJFD7_000710"
     CDS             complement(7616..8419)
                     /gene="thiF"
                     /locus_tag="ACJFD7_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HGG0859549.1"
                     /translation="MMRVKFNGKELDTDFKTSLEFFENISKNENDVWIINGFATKENI
                     ALNENDELFCIEKNTLPPKDALDAMMRARHTPKLHDKLKNGRVAVCGLGGLGSHIAIN
                     LARSGVGYLKLIDFDVIEPSNLNRQAYRVSDLGKFKTEALKEQISEINPYISVEICTL
                     KIDEDNLKSLFKDIDIVCEAFDSAIAKAMIAQNFHRFYKDSVLICASGLAGYGDSNSI
                     QTRKIAKNFYVCGDLVNGAKVGNGLMAPRVNICAGHQSNLVLELLANKE"
     gene            complement(8416..8607)
                     /gene="thiS"
                     /locus_tag="ACJFD7_000711"
     CDS             complement(8416..8607)
                     /gene="thiS"
                     /locus_tag="ACJFD7_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HGG0859550.1"
                     /translation="MIINGQKLELKELKFMDFIKEKGLKIELIALELNGEIIPKSEFE
                     NLILKENDKAEIVSFVGGG"
     gene            complement(8617..9714)
                     /gene="dapE"
                     /locus_tag="ACJFD7_000712"
     CDS             complement(8617..9714)
                     /gene="dapE"
                     /locus_tag="ACJFD7_000712"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009014 - succinyl-diaminopimelate
                     desuccinylase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HGG0859551.1"
                     /translation="MNAKEFLIELLKFKSVTPNDDGALNFIAMELSDFEAFFIEKEGI
                     KNLLLTKKFKDEGEHLAFGGHVDVVPAGEGWSNNAFAPVEKEGFIYARGAQDMKSGVA
                     AFVDAAKNADFKGARLSLILTSDEEGEAIYGTKAILEWMQERDMLPDYAVVAEPTCVK
                     KIGDSIKIGRRGSINGKLLIRGKQGHAAYPEKCINPVHDFAPVLKLLAGFDLDPGSAE
                     FSPSKIVITDIRGGMGVCNVTPNDLKLMFNVRNSPDTSLEDVKSYVEKICHGLNYELE
                     LKQSSEAFLTNIDNKIVQKMNESVQKITHEVPELNTKGGTSDARYFAKYGVKVVEFGV
                     CNDRIHAIDERVSIEEFEKLCLVFKDLIENF"
     gene            complement(9718..10317)
                     /locus_tag="ACJFD7_000713"
     CDS             complement(9718..10317)
                     /locus_tag="ACJFD7_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HGG0859552.1"
                     /translation="MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGA
                     FSIDMLYLFLLQFGLLNFLDNVIFMRSLAIFGFCFLTYMAYLMLRKKKESLNLEHKEF
                     KESLLKSYIKGAFLNGSNPFVIGFWLSAASVVLSSNHAYLMTLGLVVAILFWVSALAF
                     VVARYSHVFSAKVVFIINIISAIIIEYFALNLLYKTFIG"
     gene            complement(10310..11011)
                     /locus_tag="ACJFD7_000714"
     CDS             complement(10310..11011)
                     /locus_tag="ACJFD7_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HGG0859553.1"
                     /translation="MKNIMILSGAGLSAPSGLKTFRDNDGLWEEYDVMEVCSATGFRK
                     NPKKVLDFYDARRAQLQNVKPNHAHEKIAQLKEKWGKNLFVITQNVDDLLERAGCKDV
                     VHLHGFLPELRCLKCEEIFNIGYEKITDKQCPKCKSKDLRHNIVMFEEQAPAYATLYS
                     LLNQTSLFISVGTSGAVLPVGRYASMCEKSILNIYEKDANLEWYFDKIYIEDIISAID
                     KIALDIENFMKDGNV"
     gene            complement(11054..15148)
                     /locus_tag="ACJFD7_000715"
     CDS             complement(11054..15148)
                     /locus_tag="ACJFD7_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HGG0859554.1"
                     /translation="MITKDNLKQVLENLGFKNKNENYVKTINNYTLLIDYKNQSINYP
                     KEIKIHDKTTSNFSHPENFVVFECVHRLLEKGYKAEHLELEPKWNLGRDKKGGKADIL
                     VKDNENNPYLIIECKTTDSKNSEFIKEWNRMQEDGGQLFSYFQQEKGVKYLCLYTSDF
                     SDKLEYKNYIIQAYDNEEYLKEKELQNSYKKSNNNIELFKTWKESYELQYFKQGIFEA
                     NVNAYKILEITPTFDNLKELKEEGKYHEFAKILRKHNISGKENTFDKLVNIFLCKIYD
                     ETFNKNNLKFGYFGVMADTYANMQDRLMWLYKEAMKEFLGEKITFVSNEDIEKDFKQL
                     KIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLTQNS
                     TNQFLGNLFELFLQKGMKQDEGQFFTPIQICEFIMYSLPLQEMLNKSSKALRVIDYAC
                     GAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQNEINILY
                     ADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSVKGFLETLSDKSKNTYKLF
                     NDDINIETNNSIECFFCERANQILNDNAKAAIILPSSILNKDSIYKNTREILFQNFDF
                     IAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAENLKDNESF
                     YQDYLSAYCDFRKFDKELYSNFLNGNLDSKLAELEAFKDYRNAFRQTSDYKKLKESKI
                     YKESKDKQDLEDKAFLAYAQAIEKDKLLYFCLSLNQEVLIIKSPSDIKEQKKFLGYEW
                     SNRKGDEGLKELHEPYLSPLFERGNPQNETKLNTLIYKSFLNTLDVIPQELQTYATKA
                     RLVNMIDFEKVEFNKVISLNPSNSTQSEMSNPFINSKFELVRLKDFVLDIQTAKRPSG
                     GVGKYENGALSLGGEHIDNKSGYIKLDNPKYVPIEFYESFALQDKGIVKQFDILICKD
                     GALTGKIAMVRNEFIRKSAMINEHIFLLRCDNIAKQKYLFYILHSYSGQQALKSKITG
                     SAQGGINKTNLESILIPNADFEIQKQIVAECEKVEEQYNAIRMSVEEYQNLIKAILQK
                     CGIIDDGGGYELNSILENLQKLESKLDFNLLLSLIEEQISHSEVLVEETQSKERKQDF
                     NAFKNFSKTIQELLQTLSTPPKDGWKRISLKNEQYMELNPSKKEISKLDENMLVSFIE
                     MASVSDKGYIQSKIDRSLNEVRKGYTYFIENDILIAKITPCMENGKCAIAKNLTNNIG
                     FGSTEFHIFRAKTGLDSSFLFYNLNQQNIREKAALAMTGASGHKRVPISFYENLTISL
                     PPLEIQEKIVQNIELVEQQIDFLNLKLEFLEKEKEKILQKYLFS"
     gene            complement(15157..17367)
                     /locus_tag="ACJFD7_000716"
     CDS             complement(15157..17367)
                     /locus_tag="ACJFD7_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA];
                     GO_function: GO:0030983 - mismatched DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HGG0859555.1"
                     /translation="MMNDTKEELISKLDLNSYLEEFKALFARDKEIFLQGDSNLHFKR
                     IHELCDVEFPTIPELSNLDKALVHLSKQGILHLDEIFEFVKIFRYFEKLKKIKLGTNL
                     DSWLQKIEFVSGALELCLNFDEKGELKESLDERLVNLNAALRLKNESIIAEFKKFCYT
                     KALMPYLIDTQIHLINNLEALLVRGGFNHAIKAKIIGRSNGGGFYIVPLSVENLQNDI
                     EKIKNQKEEIYYEYAKNFSAFLAKNLPFLKFINTAFDLFDHYSARVLLAKKRDFEFVL
                     CDQSTDLVLKNFAHPALKNPKSVSLEFKKQVLIITGVNAGGKSMLLKSMLSAAFLAKH
                     LLPMHIKASESKIGTFKEFDAIIEDPQNVKNDISTFAGRMLHFSRLFSRKNLLLGIDE
                     IELGTDFEEAACLYSVLISKLIANNLKIIITTHHKRLAMLLAKNEQVELIAALYDEEL
                     SRPKYEFLKGTIGKSYAFETALRYQIPPNLVSEAKKLYGEDKENLEELVGKNINLELE
                     LKAKLENVEKKEQKVDEILLSLKEQKEKNEQEFRTSLRNLEFKFHKAIEEAKKTIQLK
                     DIKDKQRSLNKANELKKEIILPSMEQNEELRVGDFVKYEKIKGKIISISKNDAMVESD
                     GIKLRVPLKLLKKSTPTSKISPKTSISVAKPTNLSVSLDLHGLRSDEAISRLDKFISD
                     ALLAGFDEVLVYHGIGAGKLAFAVREFLKTHKSVKGFNDAPINQGGFGAKVVRL"
     gene            complement(17357..17707)
                     /locus_tag="ACJFD7_000717"
     CDS             complement(17357..17707)
                     /locus_tag="ACJFD7_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859556.1"
                     /translation="MSRFFLYFLIILILALITFALREKLGKKTKPFFGILLVIFIVLA
                     VFFEFENTQKSHLRTDIIVAFNQNKNILCKDINVSKAYFNYEFGTGSFISKDNNQSFN
                     SLIIDIKDCRLNDE"
     gene            complement(17700..18998)
                     /gene="murC"
                     /locus_tag="ACJFD7_000718"
     CDS             complement(17700..18998)
                     /gene="murC"
                     /locus_tag="ACJFD7_000718"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008763 - UDP-N-acetylmuramate-L-alanine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HGG0859557.1"
                     /translation="MMQNIHFIGIGGIGISALARFLKEKGFKISGSDLKESKITKELE
                     KEGVKVSIPHHKDNILNKDLVIYSAAIKEENPEFKYAKELGIKCLSRKEALPLILEDK
                     RVFAVAGAHGKSTTSSILASLVDDASVIIGAILKEFGSNMIYKESQNLVFEADESDSS
                     FLNSNPYLAIVTNAEAEHLDHYGNEVSKLHHAYTQFLDTAKIRVINAEDEFLKNYKNE
                     SIKLYPSKDIKNCTMCIENFKPFTSFELKDWGEFKVFGMGYHLALDASLAILAALNFL
                     DIETIRTRLKNYQGIKKRFDILHADENLVLIDDYGHHPTEIKATLSAAQEYAKLGRYK
                     KITAIFEPHRYTRLATNLKEFAKAFEGVDELVILPVYAAGEEPIELDLKAVFPKALFV
                     EDIKREGKFLVASKGQVFEEGLIIGFGAGDISNKLRQKNE"
     gene            complement(19062..>20607)
                     /locus_tag="ACJFD7_000719"
     CDS             complement(19062..>20607)
                     /locus_tag="ACJFD7_000719"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HGG0859558.1"
                     /translation="YHDYPILKILALMLIFGVFVFFLNLKILNLKLKPVNLRLFPLIA
                     LNLILIIVYVIALRGPFKHVAINVQNYSFSEYSVVNDTMLNPIMAFSWALKQYKEEAA
                     LKVITPLKAQELKEKLFDYLHQSPINLKAEKNHPSVFVNLMESFGLNLADFTNTEHNF
                     LGSLDKHFKQDFLFKRFLSSSNGTIPSFANLFFVSPFSNISTSKFQKTYLDLTPIAVY
                     KKAGYKVIFVSAGNGSWQNIKNYLSILGVDEIIDENILMKEYNGAKDSENGYGIADEF
                     LYKKVYDLLQKNPHKTLIIALTISNHPPYKIPQNDLPKLQNIPQTLLNMLPYEKDKQD
                     NIIKAYTYANNEFGKFLDKVKQSPFKNSVIIAATGDHRVREMSIDLNSQKAFAYSVPF
                     YLYIPKDLQDNIYYDKDRVGSHKDIFPTLYALSLNNVKYLSVGGRNMLARPSDEKLEF
                     GINDAVWIDKKGIYSGGKGYYFESNDTLKDMNKAFNLDGYTKDFDKFYRELNLYQLAE
                     RLGISK"
BASE COUNT         6860 a         3705 c         2603 g         7439 t
ORIGIN      
        1 ctgataaaag attattttat ttaagttgta ttttaatcac cataggaata gtattttcat
       61 actctcttac agcttttact gttctttttc ttgactatag cgagtttcat ttttttattc
      121 gtcagctttt ttttggaatt agtggcatac ttataatgtt ttttatttct cgattggatc
      181 ctgataaagc actttctaaa aaaattattt tagctatttt gattatttct tttatcttta
      241 tcatcatttt gccattttta ccttctgcat tagcaacagc tagcggagga gctaaacgct
      301 ggatacgctt aggcccactc tctatctctc ctgtggaatt ttttaaaata ggattgattt
      361 attttttagc atggagctat acaaggcgta ttgatgatag taaaaaagct atcagacacg
      421 aggctttaat tcttctgcct tattgtatct tagcttctat agttatagga tatatttata
      481 tcactcaaaa cgatttagga caaagtgtaa tttctttctt tttgattcta gctttagctt
      541 tttttgcagg agctagtaaa agactttttg cttttggaac tttaatcatt atgatgatag
      601 gtataatggt aatttttagc aaccaaagaa gaattcaaag aatcgcttct tggtggggaa
      661 atatacaaga tgctttttta cctatgcttc ctgattggct ggcaaatgct ttaagagtaa
      721 gtagcaacag cgagccttat caaatttcac actctttaaa tgctatagcc catggaggaa
      781 tgtttggcga aggcttagga cttggaactt ttaaattagg ctttttaagt gaagtgcata
      841 ctgactttgt tctttcagga attactgaag aaataggact cttaggtctt ggggttattt
      901 gctatattta tctttggatg attttaagaa tttttagaat tgcaggaaga tgtgaagcta
      961 aacaagattt tattttttgt tcaggcatag ccttactttt acttttttct ttctttatga
     1021 atgcttttgg tattatttct cttactccac taaaaggtgt agcggttcca cttttaagct
     1081 atggaggaag ttcaatgtgg gcaatttgca taggcatagg atatgtatta gtgatttcaa
     1141 aaaaggttaa attatgacaa tagctttaac aggtggtgga actggaggac atttggccat
     1201 agtgcgttgc ttattagaaa gtgcgattaa aaaaaatata gaatgtgtat acataggcag
     1261 tcaaaatggt caagataaag cttggtttga aaatgaagta cgctttaagg aaaaattttt
     1321 tttaagctct aaaggagtgg ttaatcaaag caaatttgac aaaatcagtt ctttactcca
     1381 caccttaaaa ctctccaaag attgtagaga aatttttaaa aaataccaca tccaagccgt
     1441 ttttagtgta ggtggataca gtgcagctcc tgcatctttt gcggctttat tctcacattt
     1501 gcctcttttt atacatgaac aaaattcaaa aagcggctct ttaaatatgc ttttaaaacc
     1561 tttcgctaca aaatttttta gcgcctttga aaaagaaatt agcccttatc ctgtagcaga
     1621 taaatttttt gataatgcta ggattcgcaa agaattaaaa aatattattt tcttaggagg
     1681 atcacaagga gctagcttta taaacgaact agctttaaat ttagcaccaa aacttcaaga
     1741 acaaaatatc aaaatcattc atcaatgtgg aaaaaatgat tttgaaaagt gcaaaaaaca
     1801 ttatcaaagc ttaaatatcc aagctgatat ttttgatttt agtttaaatt tggaagaaaa
     1861 aatgaaaaat gcagatctag ctatatcaag agcaggtgca agtactcttt ttgaactttg
     1921 tgctaatact ttgcccacta tttttatacc ttatccttat gcagctaaaa atcatcaata
     1981 ctttaatgct aaatttttac aagatcaagc tttatgtcaa atttttatgc aaaactctat
     2041 taatcttgat gaatttttta agtcaatatt aaaactaaat ctagaaaata tttctacaag
     2101 attgcaaaat ataacccaaa aaaatggcgc agatatgcta atccaaaaag ctttatttga
     2161 taatttgact tttataagat aaatatccaa agatatttac taaaattcca acaaaaacta
     2221 acatcaaaat agcaaatgaa aaattttcaa atttgtcatg caaaaaacct ataatccatt
     2281 gtccttgtgc tgcaattaaa tatccaaaac cctgagctaa agcagaaagt ctcgctgcta
     2341 tttgagcatt agagcttttt tgtgcaataa aaagcaacgc aatgccaaaa actccacccc
     2401 atggaaaacc catgataaaa gcactgataa taatagaaat tttactatca aaaataaaga
     2461 gcataccaaa agcgatcaca tacatactgc acaaacctgc tatgtaaaaa gtatgtaaat
     2521 tttgtcttaa ttttcctaaa agtaaagggc caaaaagaga cactggagct gcaacaagtt
     2581 gagcaaataa accatacttg tagaaaattc tttatcaaat cctttttcta caacaatttg
     2641 aacataccaa aaaaacaaag aataagctaa aaaactttga aatcccataa aaagagtaat
     2701 tttctaagtt gttaaattta taaaaagatt gattttttta tgagcttttt tcttaatacg
     2761 aaaaaatcta ccatttttag cttgaggata gtaaactact aaagctacaa aagaaaaaat
     2821 agcccagaaa aacaaaggta tagctaaagc aatacctata atcgaagaaa tactcaaaac
     2881 aagactataa attcccatta tacttgccat tttttttgga aatttttctt taataaaact
     2941 aggaagtaaa acatttgcaa ttgctatacc acagcccatt gctaacattc ctaaaaataa
     3001 gccatataca ccaaaataag aacgaataat ttcgcctaaa aaaattaaaa aaattccaaa
     3061 aacaatagca cgaataggag aaaaataccc cacaataaaa gaaatacctc caaaagctat
     3121 caaaggaaga cttgtaagta tgcctgctac ggttgagttt aaataatact tatctttaat
     3181 aatatcaata ataggcccca ctgcagtaat tggggctcta agattaaaag ctacaataat
     3241 aacaataata acattaatcc aaaatatctt tttaaaagaa gccataaaag ccttatttgt
     3301 taagttctac tttgaatatt ttaccttcta ccatcttagg aatccataaa atattacctt
     3361 caataaatat atctgcagga cctttcatca aaggaagttc aagttttaca gatttaacat
     3421 tatctaaatt ataaatatat ccatttagat tatttcccca agaacttacc aataaaccat
     3481 ctttataagg aactattcca tcataagatt ctttttcatt tttaattata ctaagttctt
     3541 ttgtatttaa atcataagcc attacaacac cgccacttac accatcagga tgataaccag
     3601 ttataaaaag cttatgtttt tttctatcta gatataaccc atttggaccg ccaaattttg
     3661 ctaaatcaag ttttaataat tcatcatatt gcttagtttt taaatcaacc tttaaaataa
     3721 gccctgtgcc agtatcgcta accaaaagcg tattgtcgtc taatttttct atgtcattta
     3781 aaaagattgc acctttaata ggtaaattaa aaatttcttt tttagtttta agatcaaaac
     3841 cgcgtaaaac atcgatatct accacataaa gagtttttcc aatctccatc atgccttttg
     3901 gtgcattaag atgggttaaa aatttatatt ctagcacttt gccattttta tcaagcttag
     3961 aaataaatcc atcattatct ttcgccaaag gttcaagttt ttctcctaca ttagatacat
     4021 aaacatagtt tttatctaca aaaatacttt cagggctttt aaaaccatca aattcttgat
     4081 attttaattc acttgcacca agcaaacttc caagaagcgc taaacttaaa acatattttt
     4141 tcatattttc tcctttattt aaaaatattt tcattgaatt atatttattt agataaaaaa
     4201 aatgtgctag ttttttgata aaaaatacaa gttttttgtt ttttgatatt gcttaggagt
     4261 ttgctcatat ttctctttaa atctttcaat aaaccaagct gccgaagaaa aagcgcactc
     4321 attagctatt tcattgatat tttttttaga aaatttaagt aaaatctttg ctttttgcaa
     4381 ccttttttca tctaaccatt ttttaggact ttgtccaaaa catttcttaa attctttaga
     4441 aaaagttgct aaatctaatt tcgcaaaatt agacatttca tttacgctta aaaattctct
     4501 accacaatac tcaaaaagtt gggaaagatc aaggcgaaat tcttttaaaa ttcctgataa
     4561 aaaactaata aaataaatat tcttatttaa aagcaaatgt aaaaaaatct cttcaaattt
     4621 caaactcact ataggatcta aaatttgcgt attttcttca aaatgcggtg aaaaactttc
     4681 caaaattcct tgcaaaatct tatcattttt tacccaaaaa atttcatagt tttgaaactt
     4741 ttgatctagt ttaaaaaaat ctttatactt ataaataagc tcaattaaaa atgcattgtc
     4801 aaaaaaaaat aaataagctt cataaactcc tttactaagt cctacattgc ttaaagtata
     4861 gctcccagct tttaaaaaca aagtttcata agagttaatc ttataatctt ttgatgcagt
     4921 atgtaaaatt ttatatcctt tgcgaacaaa agttaaaaga tgacttccta cattaacaaa
     4981 agtagaatgc gaagtatccg tttgtgtata tttagcaaaa gtgcaagatt taattttttt
     5041 ataattgaca ccttttaatt gctttaaatc ttctggtaaa gaaagaattt tattcatcgt
     5101 aaattttgcc tacattctaa aagatacttt ttaagatctt tttctttcat taaaatttca
     5161 cgcatgcaaa cacctactac atttatatct ttaaaatttt ctatattttg agcattgata
     5221 ccgcctatag cataaagtgg aatttgacta aattcaagca aggattttaa aaaatcaatc
     5281 cctttaggtt ctaaacccat cttgcaagaa ctttcaaaaa tatgccctac aaaagcataa
     5341 tttaccttat agctcatcgc ctctaaaagc tcttctttgc tatggactga agtaccaagt
     5401 atatgaaaat attttgttaa tttaggttct tttcttagca aagaaagcgg tgcgtgaaaa
     5461 taacgatgtc ccaattttaa acactcccta tcaaaaaaat gcaaaaaaca agtcactttt
     5521 tgctttgcgc aaatgcttaa aacttctttt gctaagtcat aatactcaaa ttcgcttaaa
     5581 tctttttctc ttaaaactat agcatctacc ttagccttag caagtttttc aatctgcttt
     5641 aaaaagtcta tttctacaca ttttctatcg cttatggcga tgattttttt atcccacata
     5701 gatactatcg ctcatcacag cttgtaaatt ggatctttta agcatagcta aaatttcatc
     5761 tacgcttcta tcatctgaaa tttcaaactg ctcatcaccc tttttctcac ccttatgctc
     5821 acctataccc acactcactc ctgcactcat tttagtagca ccaagcttaa taacctcatc
     5881 tctaaaacct attctttcac gacttgaaat ggtaatgccc gcaaaaggca aaaagagtct
     5941 ataagcacaa agtacttgca aaaggcgttt ttcactcaca tctttaggat ggattttagc
     6001 attattgata ataggcctta aacgtggtac tgaaatagaa atttcagcat gcgaataagc
     6061 ttgttgtaaa aaatgtgcat gaagcgccgt agcaagagcg tcttttctaa aatcatctat
     6121 acccaaaagt gccgcaaaag ccactccacg catacccgct tttaaagctc tttcttgagc
     6181 attaaagcga taaggaaaaa tgcgtttttc accagctaaa tgaattttag aatattttag
     6241 aggattgtaa gtttcttgaa aaacagtcac ataatcacaa cccttttcat gcaaaatttt
     6301 atattcatct tcattcatag gataaatttc aacacctaca accttaaaat actctctagc
     6361 aatcttgcaa gcatttgcta tatattctac acttgcaaac tccctaccct cacctgttag
     6421 cattaaaatt tcttctaaac cacttttagc aatggcttgc atttcttcgt gaatttcagc
     6481 ttcatttagc ttagctcttg cgattttatt gcctttttga aaaccacaat aaacacattt
     6541 agaattacaa taatttgaca aataaagtgg ggtaaaaaga gagatagaat ttccaaaata
     6601 tttttgcttg actttagcgg atttaaaggc taattcttct atgaaatctt ctgctgcact
     6661 tgaaagcaag gcttttaaat gctctatgct taaatgtgtt tgatttaaag catttttaac
     6721 atctttagcg ctaaattgac tctcatcata gctttgaact tgacttaaaa ccttatttaa
     6781 aatttcgctt tttatttcct gcatgtgagg taaatgctgc atataatctt gcataatcaa
     6841 tcccttaaaa agcctgttaa tggagaactt gctttagctt cactcacact tgccacacct
     6901 gctaaaaaag ccgctcttcc cgcatttact gccaaagaaa aagctctagc catcaaggct
     6961 atatctttag cttcagctat ggctgtattt accatcactg cacttactcc catttgcata
     7021 gcttcacaag cttgtgaagg acttccaata cccgcatcta caatgatagg caaatcaatt
     7081 tcattaagca aaatttgtat aaattcctta gcacataaac ctttattact cccaataggc
     7141 gctgctaaag gcatgatagc cgcagctcca gcatcacgca tagctctagc tgcgtaaaga
     7201 tcagcatgca tgtaaggtag gggcgtaaaa ccctctttag ctaaaagctc acaagcttta
     7261 atcgtttcat aattatcagg cagcaaatac ctactatcgc ttatcacttc tattttgata
     7321 agttctccac aaccaagctc tcttgaaagc cttgcaatgc gtaaggcttc atcggcgttt
     7381 cttgcgcctg aagtgttggg caaaagtgtg atatttttag ggatataatc aagtatatta
     7441 gcaatttccc ctgtatttgc acggcgtaag gctagagtga taatctgtgc tttagcttct
     7501 tctatagctg attttataag ctctagcgaa tattttccag aacctaaaat aaatcttgaa
     7561 tcaaactcgt atttgcctat ttttaattta tcgtttttta aattttcttg catttttact
     7621 ccttatttgc taaaagctct aaaacaaggt tactttgatg tcctgcgcaa atatttaccc
     7681 ttggcgccat aagtccattt cccaccttag caccatttac caaatccccg cacacataga
     7741 aatttttagc aatttttctt gtttgtatgc tgttgctatc accatagccc gcaagccctg
     7801 aagcacagat taaaacacta tctttgtaaa atctatgaaa attttgcgct atcatcgctt
     7861 ttgcgatagc actatcaaag gcttcacaaa ctatatctat atctttaaac aaagatttta
     7921 aattatcctc atcgattttt aaggtacaaa tttcaacgct gatataagga ttaatttcgc
     7981 taatttgctc ttttaaagct tcggttttaa acttgcccaa atcacttaca cgataagcct
     8041 gacgatttaa attactaggc tcaatcacat caaaatcaat caactttaaa taccccactc
     8101 cacttcttgc caaatttatc gctatatgtg atccaagtcc gcctaaacca cacaccgcca
     8161 cgcgcccatt tttaagttta tcgtgaagct ttggtgtatg tcttgctctc atcatagcat
     8221 ctagtgcgtc ttttggaggt aaagtatttt tttctataca aaaaagctca tcattttcat
     8281 ttaaagcgat attctctttt gttgcaaaac cattgataat ccatacatca ttttcatttt
     8341 tgctgatatt ttcaaaaaat tccaaacttg ttttaaagtc tgtatcaagt tctttgccat
     8401 tgaattttac tctcatcatc cacctcctac aaaacttacg atttcagctt tatcgttttc
     8461 ttttaaaatc aaattttcaa attcactctt aggtataatc tctccattta attccaaggc
     8521 gataagttct attttcaagc ctttttcttt gataaaatcc ataaatttaa gctcttttaa
     8581 ctcaagcttt tgtccattga taatcattct aaacctttaa aaattttcta tcaagtcttt
     8641 aaaaacaagg caaagttttt caaattcttc tatacttact ctttcatcaa tagcgtgaat
     8701 tctatcatta caaaccccaa attccactac ctttacaccg tattttgcaa aataccttgc
     8761 atcacttgtg ccgcctttgg tattaagctc tggcacttca tgggtgattt tttgaacgct
     8821 ttcattcatt ttttgaacga ttttattatc gatatttgtc aaaaaagctt cgcttgattg
     8881 ttttagctct aactcatagt ttaaaccatg acaaattttt tctacataac tttttacatc
     8941 ttctaagctt gtatcagggg aattgcgaac attaaacata agttttaaat catttggcgt
     9001 aacattacac acccccatac ctccgcgaat atcagttata acgatttttg aaggactaaa
     9061 ttcagcactt ccaggatcaa gatcaaaacc cgctaaaagc tttaaaactg gcgcaaaatc
     9121 atgcacagga ttgatacatt tttcagggta agccgcatgc ccttgttttc cacggattaa
     9181 aagttttcca ttgatagaac cacgacgccc tattttaata ctatcgccga tttttttaac
     9241 acaggttggc tcagcaacca cagcataatc aggtagcata tctctttctt gcatccattc
     9301 taaaatagcc ttagttccat atatagcttc gccttcttca tcacttgtta aaataagact
     9361 aagtcttgct cctttaaaat ccgcattctt tgccgcatcc acaaaggctg ctactccgct
     9421 tttcatatct tgagcacccc ttgcatagat aaagccttct ttttccacag gcgcaaaagc
     9481 attattactc caaccctcgc ctgcaggcac cacatctaca tgcccaccaa aagctaaatg
     9541 ctcgccttca tctttaaatt ttttagtgag taaaaggttt ttaatacctt ctttttctat
     9601 aaaaaaagct tcaaaatcac tcagttccat agcgatgaaa tttaaagctc catcatcatt
     9661 tggcgtaaca gatttaaatt ttaaaagttc gattaaaaat tcttttgcat tcatttttta
     9721 tcctataaaa gttttatata ataaattaag agcaaaatac tctataatta tagctgaaat
     9781 tatattgatt ataaaaacaa cttttgcact aaaaacatga ctatatcttg ccaccacaaa
     9841 ggctaaagca cttacccaaa aaagtatagc cacaacaagc cctaaagtca tcaaataagc
     9901 atgattgctg cttaaaacca cacttgcagc gctaagccaa aatcctatca caaaaggatt
     9961 tgaaccattt aaaaaagctc ccttaatata acttttcaaa agactttctt taaattcttt
    10021 atgctctaaa tttaagcttt ctttcttttt tcttagcatc aaatacgcca tataagttaa
    10081 aaaacaaaaa ccaaaaatcg ccaaagaacg cataaaaatg acattgtcta aaaaatttaa
    10141 aagcccaaat tgaagcaaaa aaagataaag catatctatg ctaaatgctc caagtcctac
    10201 agctatggaa tttttaaaag cttttagcgc ataagttaaa atcaaaatat ttacaggccc
    10261 aaaaggcaca ctcactccaa aacccaaaaa aactccactt aaaaaagaat caaacattac
    10321 catctttcat aaaattttct atatcaagtg cgattttatc aatagcgctt ataatatctt
    10381 ctatatagat tttatcaaaa taccactcta aattcgcatc tttttcgtag atatttaaaa
    10441 tacttttttc gcacattgaa gcataacgcc ctacaggcaa aaccgcccca cttgtgccta
    10501 cgctgataaa aagcgaagtt tgatttagca aagaataaag cgtagcataa gcaggagctt
    10561 gctcttcaaa catgactata ttgtgtctta aatccttgct tttgcatttt gggcattgtt
    10621 tatctgtgat tttttcataa cctatattaa aaatttcttc gcattttaag cagcgaagtt
    10681 caggcaaaaa gccatgcaaa tgtactacat ctttacaccc tgcacgctct aacaaatcat
    10741 ctacattttg cgtgatgaca aaaagatttt taccccattt ttcttttaat tgtgcgattt
    10801 tttcatgagc atgatttggc tttacatttt gaagttgtgc ccttcttgca tcgtaaaaat
    10861 caagtacttt tttaggattt tttctaaaac ctgttgcaga gcaaacctcc atcacatcgt
    10921 attcttccca aagtccatca ttatctctaa aagttttaag cccacttgga gcagacaaac
    10981 ccgctccgct taatatcata atgtttttca tcgctaaacc ttataaaatt tacaaagttt
    11041 agcgaaaaat gctttaagaa aataaatatt tttgcaagat tttttctttt tctttttcta
    11101 aaaattctaa tttaagatta agaaaatcaa tttgttgttc tactaattca atgttttgaa
    11161 caattttttc ttgaatttct agcggtggga gtgagattgt aagattttca taaaaactta
    11221 taggaactct tttgtgtcca cttgctccag tcatagcaag agctgctttt tctcttatat
    11281 tttgttgatt tagattatag aataagaaac tgctatcaag ccctgttttt gctctaaaaa
    11341 tatgaaattc tgtgctacca aaacctatgt tatttgttag attttttgcg atagcacatt
    11401 taccattttc catgcaagga gtaatttttg caatcaaaat atcattttct ataaaatatg
    11461 tgtagccttt tcttacttcg tttaatgacc tatctatctt actttgaata taacccttat
    11521 ctgaaacact agccatttct ataaatgaga caagcatatt ttcatcaagt tttgatattt
    11581 cttttttgct aggattgagt tccatatatt gttcattctt taaagaaatt ctcttccagc
    11641 catcttttgg tggagttgag agagtttgta aaagctcttg tatggtttta gaaaagtttt
    11701 taaaagcatt aaaatcttgc tttctttcct tgctttgagt ttcttcaact aatacttcag
    11761 aatgactaat ttgttcttca attagcgaaa gcaaaagatt aaagtcaagt ttagattcta
    11821 atttttgcaa attttctaaa atagaattta gctcataccc ccccccatca tctataatac
    11881 cgcatttttg aagtattgcc ttgattaaat tttgatactc ttccacactc attcttattg
    11941 cgttatactg ctcttctacc ttttcacatt ctgccacgat ttgcttttga atctcaaagt
    12001 ctgcatttgg tattaaaata gattctaaat ttgttttatt gattccgcct tgagccgaac
    12061 ctgtaatttt agattttaaa gcttgttgtc cactataaga atgtaatata taaaataaat
    12121 atttttgttt tgctatatta tcacaacgca ataaaaaaat atgctcatta atcattgcag
    12181 atttcctaat aaattcatta cgcaccattg caatttttcc agttaatgca ccatctttac
    12241 atattaaaat atcaaattgt tttacaattc ctttatcttg caacgcaaaa ctttcataaa
    12301 attctattgg tacatactta ggattatcta atttgatata cccactttta ttgtctatat
    12361 gttctccacc aagactcagt gcaccgtttt catatttgcc gacaccacca ctaggacgct
    12421 ttgcggtttg aatatctaat acaaaatctt taagtcttac taactcaaat ttagaattta
    12481 taaaaggatt agacatctca ctttgcgttg aattgctagg atttaaactt ataactttat
    12541 taaattccac tttttcaaaa tctatcatat taacaagcct tgcttttgta gcataagtct
    12601 gtaattcttg cgggataaca tcaagcgtat ttaaaaaaga tttgtagatt aaagtattaa
    12661 gcttagtttc attttgcgga ttgcctcttt caaaaagtgg gctcaaataa ggctcgtgca
    12721 attcttttaa accttcatca ccttttctat tactccactc ataacctaaa aatttctttt
    12781 gttcttttat atcacttgga gattttatga ttaagacttc ttgattaaga cttaaacaaa
    12841 aataaagcaa tttatccttt tcgatcgcct gagcataagc taaaaaggct ttatcttcta
    12901 aatcttgctt atctttactt tctttataaa ttttagattc tttaagtttt ttataatcac
    12961 ttgtttgcct aaatgcattg cgataatctt taaaggcttc taactctgca agtttagaat
    13021 ctaagtttcc atttaaaaaa ttgctataaa gctctttatc aaattttcta aagtcacaat
    13081 acgcacttag ataatcttga taaaagcttt cattgtcttt taaattttca gcttctatgc
    13141 gttctttaat caaactataa tcttgagaaa taagatgatt ttcttgttta aaagtttctt
    13201 ttttgcgtaa aaataaaata atcgtatttg tccctgttgc tccaaatgtt tgattaccta
    13261 gctctacaat ggcaataaaa tcaaaatttt gaaataatat ttctcttgta tttttataaa
    13321 tagaatcttt atttaaaata gaacttggta agataatagc agctttagca ttatcattta
    13381 aaatttgatt tgctcgctcg caaaaaaagc attcgataga attatttgtt tctatgttta
    13441 tatcatcgtt gaaaagttta taagtatttt tagatttatc acttaaagtt tctaaaaatc
    13501 cttttacaga ataaggcgga tttgctataa gcaaatcaaa actatttgat tctatttgtg
    13561 gttttgcttt ttctccttct aaattatttg tatttgctaa ttcaaaagaa gcaagtgcat
    13621 cagcatataa aatattgatt tcattttgcc catacattgc acttgatacc ttagaaacct
    13681 tacttaagcg atactctttt tcaataccat aaatattttt ataatgctct ttaagctcat
    13741 cttctgttag ataacgctta agctcattgg cataggtgtt taaaaaatgt ccagcaccac
    13801 aagcataatc aatcaccctt aaagctttag agcttttgtt taacatttct tgaagcggta
    13861 aagaatacat aataaattca caaatttgaa taggggtaaa aaactgccct tcatcttgct
    13921 tcataccttt ttgtaaaaaa agttcaaaaa gattgcctaa aaattgattt gtagagtttt
    13981 gagtaagctt gtaatttgca aaaagctcta ctatttcttt taatacaagt gcatttttta
    14041 agaataattc tttattatgc acttctaaaa atgcaaaatc attatttgaa taaaatttta
    14101 attctttgat gtaattttgc attacttctt ttaaagtttt tatctttaat tgcttaaagt
    14161 ctttttctat atcttcatta gatacaaagg taattttctc tcctaagaat tctttcatag
    14221 cttctttata aagccacatt aatctatctt gcatatttgc ataagtatct gccattacac
    14281 caaaatatcc aaatttgaga ttgtttttat taaaagtttc atcatagatt ttacaaagaa
    14341 aaatatttac aagtttatca aaggtatttt ccttgcctga tatattatgc ttgcgtaaaa
    14401 tttttgcaaa ttcgtgatat ttaccttctt ctttaagttc cttaagatta tcaaaagttg
    14461 gagtaatttc taaaatttta taagcattga catttgcttc aaaaatacct tgtttaaaat
    14521 attgcagttc ataactttct ttccaagttt taaaaagttc tatattgtta ttagattttt
    14581 tataagaatt ttgcaattcc ttttctttta gatattcttc gttatcgtaa gcttgtatga
    14641 tgtaattttt atattctaac ttatcgctaa aatcacttgt ataaagacaa agatatttta
    14701 cacctttttc ttgctgaaaa taagaaaaaa gctgtccgcc atcttcttgc attctattcc
    14761 attcttttat aaattcacta tttttagaat ctgtggtttt gcattctata atcaaataag
    14821 gattgttttc attatccttt actaaaatat cagccttacc acctttttta tccctgccaa
    14881 gattccattt tggctctaac tctaaatgtt cagccttata acctttttct aaaagtctat
    14941 gcacacattc aaaaactaca aaattttcag ggtgtgaaaa attagaagta gttttatcgt
    15001 gaatttttat ttcttttgga taattaatac tttggttttt ataatctatt aaaagagtgt
    15061 aattattgat tgtttttaca taattttcat ttttattttt aaaacctaag ttttctaaaa
    15121 cttgttttaa attatctttt gtaatcattt atttccttat aatcttacca ccttagcacc
    15181 aaagccacct tgattgatcg gtgcgtcatt aaagcccttg acacttttat gagttttcaa
    15241 aaactctctt acagcaaagg caagctttcc tgctcctata ccatggtaaa ctaaaacttc
    15301 atcaaagcct gcaagcaaag catctgaaat aaatttatca agccttgaaa tagcttcatc
    15361 actcctaagc ccgtgcaaat ccaagctaac actaagatta gtcggttttg ccacactaat
    15421 gcttgttttt ggacttattt tagatgtagg agtgcttttt ttaagcagtt ttaaaggcac
    15481 acgaagtttg atcccatcac tttcaaccat agcatcgttt ttagaaatgc ttatgatttt
    15541 acccttaatt ttttcatatt ttacaaaatc ccccacacgc aattcttcgt tttgctccat
    15601 acttggcaag atgatttctt ttttaagttc attggcttta ttaagacttc tttgcttgtc
    15661 ttttatatct ttaagctgta tggttttttt agcttcttct atggctttgt gaaatttaaa
    15721 ttctaaattt ctcaaactcg tacgaaattc ttgttcattt ttttcttttt gctcttttaa
    15781 ggaaagtaaa atttcatcga ctttttgctc ttttttttcg acattttcaa gcttagcttt
    15841 tagttctaat tcaagattga tatttttacc cacaagctct tctaaatttt ctttatcctc
    15901 gccataaagc tttttagcct cgctaactaa attcggcgga atctgataac gcaaagcggt
    15961 ttcaaaggca taagattttc ctatggtgcc ttttaaaaac tcgtattttg ggcgtgaaag
    16021 ctcttcatca tataaggcag cgatgagttc aacttgttca ttctttgcta aaagcatggc
    16081 aaggcgtttg tggtgtgtag taatgatgat tttaagatta ttagctatga gttttgaaat
    16141 taacacacta tacaaacaag ccgcttcttc aaaatctgtt ccaagctcta tttcatcgat
    16201 acctaaaagc aaatttttcc tagaaaaaag tctagaaaaa tgcaacattc ttcctgcaaa
    16261 agttgaaatg tcgtttttaa cattttgcgg atcttctatg atggcatcaa attctttaaa
    16321 agtaccgatt ttactttcac ttgcttttat atgcataggc aaaagatgtt tagctaaaaa
    16381 tgctgcgctt agcatggatt ttaaaagcat ggattttccg cctgcattta cccctgtgat
    16441 gattaaaact tgttttttaa attccaaact cacgcttttt ggatttttta aggcaggatg
    16501 agcgaaattt ttaagcacta aatccgtact ttgatcacac aaaacaaatt caaaatccct
    16561 ttttttagca agcaaaaccc tagcactata atgatcaaaa agatcaaagg ctgtattgat
    16621 aaattttaaa aaaggtaggt tttttgctaa aaaagctgag aaatttttag cgtattcata
    16681 ataaatttct tctttttgat ttttgatttt ttctatatca ttttgcaaat tttcaacact
    16741 taaaggcacg atataaaagc caccgccatt acttctgcct atgatttttg ctttaatagc
    16801 gtgattaaac ccgcctctta caagcaaggc ttcaagattg tttataagat ggatttgtgt
    16861 atcgataaga taaggcatca aagcttttgt ataacaaaat ttcttaaact cagctattat
    16921 gctttcgttt ttcaatctta aagcggcatt aagatttaca agtctttcat ctaaactttc
    16981 ttttaattct cctttctcat cgaaattcaa acaaagctcc aaagccccgc taacaaattc
    17041 tatcttttgt agccaagagt ctaaatttgt tcctagtttt atttttttta acttttcaaa
    17101 ataacgaaaa atttttacaa attcaaaaat ttcatctaaa tgtaaaattc cttgcttact
    17161 taaatgaacc aaggctttat caagattgct aagctctggt atagtaggaa attccacgtc
    17221 gcaaagctca tgtatacgtt taaaatgaag attagaatct ccttgcaaaa aaatctcctt
    17281 atctcttgca aaaagggctt taaactcttc taaatagctg tttaaatcaa gctttgagat
    17341 caattcttct tttgtatcat tcatcattta acctacaatc tttaatatct atgattaaag
    17401 aattaaaact ttgattatta tcctttgaaa taaaacttcc tgtaccaaat tcataattaa
    17461 aatacgcctt agaaacattg atatctttac ataaaatatt tttattttga ttaaaagcta
    17521 cgataatatc tgttcttaaa tgactttttt gcgtgttttc aaattcaaaa aatactgcta
    17581 aaacaataaa aatcacaagc aaaataccaa aaaaaggttt agtttttttg cctaattttt
    17641 cacgcaaagc aaaagtgatt aaggctaaaa ttaaaataat taaaaaatat aaaaaaaacc
    17701 tactcatttt tttgccttaa tttattactg atatctcctg caccaaaacc tataataagc
    17761 ccttcttcaa aaacttgccc cttagaagcc accaaaaatt taccctctct tttgatatct
    17821 tctacaaata aagccttagg aaaaaccgct tttaaatcaa gttctatagg ctcttctcct
    17881 gcagcataaa caggtaaaat tacaagctcg tctacacctt caaaagcctt tgcaaattcc
    17941 tttaaatttg tagccaaacg cgtgtagcgg tgaggttcaa aaatggctgt aattttttta
    18001 tatctaccta attttgcgta ttcttgtgct gcgcttaaag tcgcttttat ttcggtggga
    18061 tgatgaccat aatcatcgat taaaaccaaa ttttcatcag catgtaaaat atcaaaacgc
    18121 tttttaatac cttgataatt tttaagccta gttcttatcg tttctatatc taagaaattt
    18181 aaagccgcca aaatcgccaa agacgcatca agggctaaat gatatcccat gccaaaaacc
    18241 ttaaattcac cccaatcttt caactcaaag cttgtaaaag gtttgaaatt ttctatacac
    18301 atggtgcagt ttttgatatc tttgctcgga taaagcttga ttgactcatt tttataattt
    18361 ttcaaaaact catcttcagc attaatcacg cgaattttag ccgtgtctaa aaactgcgta
    18421 taagcatgat ggagttttga aacttcatta ccataatgat ctaaatgctc tgcttccgca
    18481 ttggtaacta tagccaaata aggatttgaa tttaaaaaag aactatcgct ctcatcagct
    18541 tcaaaaacaa gattttggct ttctttataa atcatatttg aaccaaattc ttttaaaatc
    18601 gctccgatga tcacagaagc atcatcaacc aaagaagcta aaatacttga agttgtgctt
    18661 tttccatgtg ctcctgcaac tgcaaaaaca cgcttatctt ctaaaataag aggtaaggcc
    18721 tccttgcgtg aaaggcattt aatgcctaat tctttagcgt atttaaattc aggattttct
    18781 tctttgatag ccgcagaata aataactaaa tctttattta aaatattgtc tttatgatga
    18841 gggatactga ccttaacccc ttctttttct agttctttag tgattttact ttctttaaga
    18901 tcactcccgc taatcttaaa gcctttttct tttaaaaatc ttgctaaagc ggaaattcct
    18961 ataccgccta tgccgataaa atggatattt tgcatcattt aaacctttat actttaaagg
    19021 ctaaatttta gcactttttt actaaaaaga aaatataaat cctattttga aatgcctaaa
    19081 cgctcggcta attgatataa atttaactct ctataaaatt tatcaaagtc tttagtataa
    19141 ccatcaaggt taaaagcttt attcatatct tttaaagtat cattactttc aaaataatac
    19201 cctttaccgc cactataaat acctttttta tcaatccata cagcatcgtt gatcccaaat
    19261 tctaatttct catcacttgg tcttgctaac atatttcttc cgcctacgct taaatacttg
    19321 acattattta aacttaaagc ataaagagtt ggaaaaatat ctttatgaga tcctacacga
    19381 tctttatcat aataaatatt atcttgcaaa tccttaggaa tataaagata aaaaggtaca
    19441 ctataagcaa aagctttttg ggaatttaaa tctatactca tttcgcgtac tctatgatct
    19501 ccagttgctg ctataataac actattctta aatggacttt gttttacttt atctagaaat
    19561 tttccaaatt cattatttgc ataagtataa gctttgataa tattatcttg tttatctttt
    19621 tcataaggaa gcatattaag caaagtttgt ggaatgtttt gtaattttgg caaatcattt
    19681 tgtggaattt tataaggtgg atgattggat atggtaagag caattataag ggttttatgt
    19741 ggattttttt gaagcaagtc ataaactttt ttatataaaa actcatcagc tatcccataa
    19801 ccattttcac tatcttttgc tccattatac tctttcatta aaatattttc atctataatc
    19861 tcatctactc ccaaaatact gagataattt ttaatatttt gccaagatcc attacctgca
    19921 cttacaaaaa tcaccttata tcctgctttc ttataaacag caataggtgt taaatccaaa
    19981 taagttttct gaaatttact tgtagaaata ttagaaaatg gacttacaaa aaataagttt
    20041 gcaaaacttg gtatagttcc attactagaa ctcaaaaagc gtttgaataa aaaatcttgc
    20101 ttaaaatgtt tatctaatga acctaaaaaa ttatgttctg tatttgtaaa atcagccaaa
    20161 ttaagcccaa aactttccat taagttaaca aatacactag gatgattctt ttcagctttt
    20221 agatttatag gactttgatg caaataatca aaaagttttt ctttaagttc ttgtgctttc
    20281 aaaggtgtga taaccttcaa agccgcttct tctttatatt gttttaaagc ccaagaaaat
    20341 gccataattg gatttaacat tgtatcattt acaacactat actcactaaa agaataattt
    20401 tgtacattta tagccacatg cttaaagggg ccccttaagg ctataacata aacaataatt
    20461 aatattaaat ttaaagctat caagggaaat aatcttaaat taacaggttt tagctttaaa
    20521 tttaatattt tcaaatttaa aaaaaataca aaaactccaa aaatcaacat taaagctaaa
    20581 atttttaaaa ttggataatc atgataa
//
LOCUS       DBBXPZ010000024        20294 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.024, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000024 DBBXPZ010000000
VERSION     DBBXPZ010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20294)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20294)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20294
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.024"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..2337
                     /locus_tag="ACJFD7_000720"
     CDS             <1..2337
                     /locus_tag="ACJFD7_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HGG0859559.1"
                     /translation="ELEIFKKNLSSYTQSCRKFFLKQGAFSLYHSKNMDNFIKKAYDI
                     VLKDYFDDFSPPGDNIPFCVLASKAYANNSLCFNESISLIFVYKDIKAFHLKPMIKAF
                     IEILNDAHLQIDSVILEFNGLYNASNELKTSIIQTRFICGSRILFKGIKTKFESILKE
                     NKNDFAKLLLENFKEFDIPFIKQEFNILKDFGGLNHLRSLESLLVLFKTSPKNYALNF
                     IDEKNLSELRLAGDFLLSLKSAMNLLSAKDEDEFLLINVHDLSELMYKKAKKHFGANE
                     LLVQKALQSMHTIGFYTHFLAKQIQDGLNHTLKQEYKFKTLVEVLEYLLKLEDKQVIF
                     DLHLVFALRRLKYGKKDIEKALILFEKIFYKRHSFCVLKLLLDSGILKDLCKPFWTVR
                     FLSDEEGNYSFDEQVFLMLSEFEKYEDELETLQKLKTYEKMILKLVILLSAIESENEI
                     SLAGIYRAYCSKFDLKNEILEWGLKIFKNNNALKDLVEKEDIYNPIVVSSLVSKLENL
                     ENLELLYTLTWLKAKALNYNAFYFRVLDKLLENAKQGFEDENLLEESARRVKKELTLK
                     RSKIFLEQDEILQDKIIHIKSNLFIIKNTFEDIVMISKLAKENDFKFWFSNETNLSLQ
                     IVAPLHFNIAIILSSLTNLNLIFMNFFELFDDKIYLRFEYDNIISDEQKLKLCELLNS
                     NLSGFNLKKIKKPIIKKEELKLDLNYSKMYAKLGLNTKDQQGLMAYLMNVFNELELVL
                     CAAKIQTIRQRTRNIFIFQKNEKLEHSEQKLVNLLISE"
     gene            2342..4138
                     /gene="glmS"
                     /locus_tag="ACJFD7_000721"
     CDS             2342..4138
                     /gene="glmS"
                     /locus_tag="ACJFD7_000721"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:1901137 - carbohydrate derivative
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HGG0859560.1"
                     /translation="MCGIVGYIGNNEKKQIILNGLKELEYRGYDSAGMAVMQEGELSF
                     FKAVGKLENLANKCTDFESQGYGFAVGHTRWATHGKPTEINAHPHLGQYSCVIHNGII
                     ENYKEIKDKLEKEGVSFLSQTDTEVIVQLFEFYARNLGVFEAWQKTIKELRGAFATLL
                     VTKKDPNHVYFAKNAAPLIIGKNANKEWYFSSGDAPLIGSCDEVMYLEDLSLGYASKD
                     ELVVYENDILKSLCFSKLSGDKAYAKKDGFRFFMEKEIYEQSRVMSEVLMGRIQGDEV
                     VFDELNNEDLSQVDEITLCACGTSYHAAMASAYLFERIAKVKAKVEIASEFRYREAII
                     KKDSLFIVISQSGETADTLEALKIAKEQGAKTFAICNVDNSNIVRLAHLSLLTRAGIE
                     KGVASTKAFATQVLTLWMLAIFMAQKRNLNVSAEIKALLHTPNCVSVKQALHEKIHRL
                     SKRYLDGHGFFFIGRDVFYPLALEGALKLKELSYLHAEGYPAGEMKHGPIALADSKLY
                     TIALMPKHMLYEKTKSNVEELIARDSTVLSISPLEFDLSDDFIKTNEQDHYMCEFFEM
                     MVITQLLAMEISIRLGNDVDMPRNLAKSVTVE"
     gene            4141..7266
                     /locus_tag="ACJFD7_000722"
     CDS             4141..7266
                     /locus_tag="ACJFD7_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HGG0859561.1"
                     /translation="MKKFFCLTLVCKLFALSEFELHHIDKVHKLGYSGDTIIIGVADD
                     AFNQDHISLKDKILKSTYPTDTAGKQLIPDLKKSTHGSHVAGIAVGAKIGDSKPYGVA
                     YGAKFYGAGVFPNGSYTQIPDIYNFFKDVSIINNSWGINFYPYFNLKASNSGLVDCTQ
                     TNQGTSYNICNTPLEYVMKADKVANDMMRLSKDKGVLNVFAAGNEGILSPALHAILPS
                     YDESLRAWLAVGALDANEITLESDGTLIIKSQGLADFSNGFKGATNFSLVAAGVNINN
                     VDSSTNDKFTKKSGTSMAAPMVSGTAALVKQNFPFLDGKQIADILLSTANKNYKAPKF
                     TVKQVTDGTNQPKFLIVYISQDPPRIEDEIKRDLKQLYNGIQVQVNGQWIDYSDYIWD
                     NRDSAQSQKLNTSTISSINGVVRVEKEELFGQGILDAQKALKGLSILDANRLSDQDVL
                     KYEQEPNTAYYTINTAGYDAEFSNDISQRKWDESTHLSSAINKPTHLANLNIGLSKEG
                     EGILIISGQNTYEGATLIKQGELKLKGKVKNNAYVEQKAILSGNGIVGQNLNNKGIVR
                     PGNEDLNDLTVQGTYTQEGVDSKLQLDFGNYKNSKLIAKTYDIKSGNLEYIPLPKYYI
                     LNKPVKINLGDLEKSLSSFNHVLIQNTYALNFDFILSDDLVSINKTLIKPNLKPNAYE
                     IPNTSLGNALRQLRSRADLSQTYQEFFASLDNGIDVKTKLNRIEGSGYLSTFSNHNQS
                     NLMQNNMLFTLHPLNINNFAQNNNILLASTYLPRIFSNEEYFWHLTPSYKYYKDKDFS
                     GQKTGANISLGENFSSGFLAYALSLSSAKFNFNNGSDLKSYNMDLLLNYNHDLDFIKI
                     LSGLGIGVGFNTLNRFVVEQPIEGKYKTLQTSAQLGVTKDIILGQDFIFNPLMYFTHS
                     FFYQEDFKENKSPFAKNYESLKHHSINANLGFNLAKNIEQDDYQASFSTFVIFEKRIY
                     GRTLENKASFVDFPITFIQKYKLKDNILSQGFNSEFLYKNNVFWQFMLMNRFSHNAYE
                     LHLMSSVGKRF"
     gene            7322..8713
                     /gene="fumC"
                     /locus_tag="ACJFD7_000723"
     CDS             7322..8713
                     /gene="fumC"
                     /locus_tag="ACJFD7_000723"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045239 - tricarboxylic acid cycle
                     heteromeric enzyme complex [Evidence IEA];
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006106 - fumarate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HGG0859562.1"
                     /translation="MEYRVEHDTMGEVKVPNDKYWGAQTERSFENFKIGCEKMPKVLI
                     YAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSN
                     MNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLI
                     PALDELIATFEKKVKEFDGIIKIGRTHLQDATPLTLAQEFSGYLSMLLHSKEQIIASL
                     PTLRELAIGGTAVGTGLNAHPELSQKVSEELTQLIGTKFVSSPNKFHALTSHDAINFT
                     HGAMKGLAANLMKIANDIRWLASGPRCGLGELIIPENEPGSSIMPGKVNPTQCEAVTM
                     VAVQVMGNDAAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEP
                     NRAKIDHNLHNSLMLVTALNPHIGYENAAKVAKNAHKKGISLKESAMELGLVSEEDFN
                     KFVDPTKMIGSKA"
     gene            complement(8743..9786)
                     /locus_tag="ACJFD7_000724"
     CDS             complement(8743..9786)
                     /locus_tag="ACJFD7_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HGG0859563.1"
                     /translation="MQNGKFFLISFILVILFLLLYLFKGFLLVIIIASLMAVATSNIN
                     AKFLNLTKGHKFLASILTTACMVLLFFAPFVYAMIELAKALKNFDINLVTQTLDYVKN
                     YQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYASSFTKSGAKFLIDMVLICVFYF
                     FANLYGTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGLITI
                     FYGYDGILMGVIFAVSSLIPAIGGALIYMPVSLYEFASNNLNSALVIFIYSVIVISFI
                     ADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILTFFVST
                     LRMYVILKDKNLI"
     gene            complement(9790..10797)
                     /gene="ruvB"
                     /locus_tag="ACJFD7_000725"
     CDS             complement(9790..10797)
                     /gene="ruvB"
                     /locus_tag="ACJFD7_000725"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HGG0859564.1"
                     /translation="MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFITA
                     AKKRNECLDHILFSGPAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLS
                     EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
                     AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR
                     IALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKP
                     IGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSYSALKLNYEKTLFE
                     E"
     gene            10888..11298
                     /locus_tag="ACJFD7_000726"
     CDS             10888..11298
                     /locus_tag="ACJFD7_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase"
                     /protein_id="HGG0859565.1"
                     /translation="MGILTKLELDYEIDDIEKFLQFFRTMCDRFEPLIIKLGSDSVRY
                     KEAIKELETLAHNTAWAARRLNLEEVTDFCVFCEEMMAQANRFNGPASDEFTDWMLLM
                     SDQFEKYCRSYENDDSVLAVFNPLIVNVPNIISK"
     gene            11299..11657
                     /gene="ssrA"
                     /locus_tag="ACJFD7_000727"
     tmRNA           11299..11657
                     /gene="ssrA"
                     /locus_tag="ACJFD7_000727"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            11713..12285
                     /locus_tag="ACJFD7_000728"
     CDS             11713..12285
                     /locus_tag="ACJFD7_000728"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859566.1"
                     /translation="MKLRMIYYRERWHIKRDLYDWWLRKIKEGASVGHRYSCLCVLAS
                     YAVKCDIPEDELFTDAFSLLQFLDDMSDDEHNRFTKRDIMDAMQFYQENYVTYSRSEA
                     ERVSAIPMPANKRNYQKQADHLEKARAIRDIRMKRQDRDWREGNGRPKGSGEKSKIVE
                     EWQRQHPDGKKADCIRETGLSKPTVYKWWK"
     gene            12816..14735
                     /gene="tet(O)"
                     /locus_tag="ACJFD7_000729"
     CDS             12816..14735
                     /gene="tet(O)"
                     /locus_tag="ACJFD7_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance ribosomal protection
                     protein Tet(O)"
                     /protein_id="HGG0859567.1"
                     /translation="MKIINLGILAHVDAGKTTLTESLLYTSGAIAELGSVDEGTTRTD
                     TMNLERQRGITIQTAVTSFQWEDVKVNIIDTPGHMDFLAEVYRSLSVLDGAVLLVSAK
                     DGIQAQTRILFHALQIMKIPTIFFINKIDQEGIDLPMVYREMKAKLSSEIIVKQKVGQ
                     HPHINVTDNDDMEQWDAVIMGNDELLEKYMSGKPFKMSELEQEENRRFQNGTLFPVYH
                     GSAKNNLGIRQLIEVIASKFYSSTPEGQSELCGQVFKIEYSEKRRRFVYVRIYSGTLH
                     LRDVIRISEKEKIKITEMCVPTNGELYSSDTACSGDIVILPNDVLQLNSILGNEILLP
                     QRKFIENPLPMLQTTIAVKKSEQREILLGALTEISDGDPLLKYYVDTTTHEIILSFLG
                     NVQMEVICAILEEKYHVEAEIKEPTVIYMERPLRKAEYTIHIEVPPNPFWASVGLSIE
                     PLPIGSGVQYESRVSLGYLNQSFQNAVMEGVLYGCEQGLYGWKVTDCKICFEYGLYYS
                     PVSTPADFRLLSPIVLEQALKKAGTELLEPYLHFEIYAPQEYLSRAYHDAPRYCADIV
                     STQIKNDEVILKGEIPARCIQEYRNDLTCFTNGQGVCLTELKGYQPAIGKFICQPRRP
                     NSRIDKVRHMFHKLA"
     gene            14787..14960
                     /locus_tag="ACJFD7_000730"
     CDS             14787..14960
                     /locus_tag="ACJFD7_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich KTR domain-containing protein"
                     /protein_id="HGG0859568.1"
                     /translation="MMKCEWILCPVCGSKTRNKIRKDTVLENYPLYCPKCRQERLIKV
                     DNLKITVIKEPDA"
     gene            15714..17999
                     /locus_tag="ACJFD7_000731"
     CDS             15714..17999
                     /locus_tag="ACJFD7_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002821824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HGG0859569.1"
                     /translation="MKKNASSKILLSLGVATLLYSSAFAQEQNINLTESSDIGKYFEE
                     NGKDINLKNPDDYKGKDLSITMGVWDLPNDDYDNADYRLNIDIGKNNTLSFTHNNGEN
                     PAYVTNLNATAQEVKTTDIVLQAFAPSVINGNLTMTSSGSEAITEDEKKGSGIILYNG
                     TVEGKSANGSLTINGNFTADKTLFATYGNFVKVNGTANLTNSNFGLIKRSYTDLEANN
                     VVMVQAKDFNKDILEEKSNNNAGALLVKFLNDYVSTDLHGKDVIETGAVIDISDEDEY
                     GDGKKGLVDYKLSVQNCGGNKCLVVNGGATAAAKDKLTQLKVDINAIDKLLKNEFDSS
                     QDEEWKQAKEALEKQKTELEKLQQEAMQNGGKIDDEKYIDLVNKNLNLNLSANDKASI
                     LALRSITEQLGSIGADLASREGVKLALDIKKDTDNTGKSVSNLNSASSAVNTTMNISN
                     DVSIGSRVAMLNNPFGTYASKMNGLKFAALDSDMRPSYVNEYTNSVWANAFGGANIID
                     GDSGAMYGATIGVDKQANDDVLWGAYFTYANAKIKDNNLEQKSDNFQLGMYSTINIAP
                     QWELNLKAYAQVSPTKQDNVQTDGAYNSDYTSKFLGLSANAGRVFDFSDNTLFIKPFA
                     GVNYYFSYTPSHTENGAIAKDIDSMKNNSVSVEVGAEFRKYMNENSYIFVTPKIEQFV
                     INSGDDYTANLAVNNAFFTSVEANNKKKTYGQIIVGGNVDFTNQLSMNLGFGAKQILA
                     GRVDSKNETYLSGQVGLKYKF"
     gene            complement(18139..20247)
                     /locus_tag="ACJFD7_000732"
     CDS             complement(18139..20247)
                     /locus_tag="ACJFD7_000732"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HGG0859570.1"
                     /translation="MQLKKEKLMQTSPDMFINRELSWLRFNSRVLDQCSKNLPLLEKL
                     KFIAIYCTNLDEFYMIRVAGLKQLFSAGVNASSSDEMTPLQQLKAIRKYLHQEKELLE
                     RYFNEITSELEKENLFIKHYENLDENLKQKCDEYFFSNIFPVIVPIAVDATHPFPHLN
                     NLSFSLAVKICDKAHPELVKFGMIRIPRVLPRFYEVSANIYVPIESIVHQHAEEIFPG
                     YKLLASAAFRVTRNADMVIEEEEADDFMMILEQGLKLRRKGAFVRLQIQKDADEQIVE
                     FLNTHMKIFHKDVYEYSILLNLPSLWQIAGNKTFTHLLSPLYTPKTLPPFDENLSIFD
                     AVEKEDILIIQPFESFDPVYKFIKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASD
                     GKQVTVMVELKARFDEENNLHWAKALENAGAHVIYGITGFKVHAKVSQVIRKQGDKLK
                     FYMHLSTGNYNASSAKIYTDVSYFTSKAEFARDTTSFFHILSGFSKNRRLQTLSMSPN
                     QIKEKVLEMIRIETSKKNEGVIVAKMNSLVDSDIIQALYEASMEGVQIDLIIRGICCL
                     KPDEEYSKNIRVRSIIGKYLEHARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIY
                     DERNKAKLAQFLRLQLSDNVLAYELKNNGEYEKIPSSEKIIDSQQTLEEYVSKIYKTL
                     KKDTDQSRATHLASKLFKEN"
BASE COUNT         6986 a         2898 c         3766 g         6644 t
ORIGIN      
        1 gaattggaaa tttttaaaaa aaatcttagt tcctataccc aaagttgtag aaaatttttt
       61 cttaagcaag gggcgtttag cttatatcat tctaaaaata tggataattt cataaaaaaa
      121 gcttatgata tagttcttaa agattatttt gatgattttt cacctccagg tgataatatc
      181 cctttttgtg ttttagcaag caaagcatat gcaaataata gtctttgttt taatgaaagt
      241 atttctttga tttttgttta taaagatatt aaggcttttc atttaaaacc tatgattaag
      301 gcttttatcg aaattttaaa tgatgcgcat ttgcaaattg actctgttat cttagaattt
      361 aacggacttt ataatgctag caatgagctt aagacttcta taatacaaac tcgtttcata
      421 tgtggttcta ggattttatt taaagggatt aagacaaaat ttgagagtat tttaaaagaa
      481 aataaaaatg attttgccaa gcttttgcta gaaaatttta aagaatttga tattccattt
      541 ataaagcagg aatttaatat cttaaaagat tttggcggat taaatcattt aagatcctta
      601 gagagtttgc ttgttctttt taagacttct ccaaaaaatt atgctttaaa ttttatagat
      661 gaaaaaaatt taagcgagtt gcgtttagct ggagattttt tactttcttt aaaatcagcg
      721 atgaatttat taagtgctaa agatgaggat gagtttttac ttattaatgt tcatgatttg
      781 agtgaattaa tgtataaaaa agctaaaaaa cattttggag caaatgagtt gttggttcaa
      841 aaggctttac aaagtatgca tactataggt ttttatacac actttttagc aaagcaaatt
      901 caagatggat taaatcatac tcttaaacaa gaatataaat ttaaaactct tgtggaagtt
      961 ttagaatact tattaaaact tgaagataaa caggttattt tcgatcttca cttggttttt
     1021 gccctaagaa gattgaaata cggtaaaaaa gatatagaaa aagctttaat actttttgag
     1081 aaaatttttt ataaaaggca tagtttttgt gttttaaaac ttttgcttga tagtggaatt
     1141 ttaaaagatt tatgcaagcc tttttggaca gttcgttttt taagcgatga agaaggaaat
     1201 tatagttttg atgagcaagt ttttcttatg ttaagtgaat ttgaaaaata cgaagatgag
     1261 cttgagacac tccaaaaact taaaacttat gaaaaaatga ttttaaagct tgtgatactt
     1321 ttaagtgcta tagaaagtga aaatgaaatt tctttagcag gcatatatag agcgtattgc
     1381 tccaaatttg atttaaagaa tgaaatttta gaatggggtc ttaaaatatt taaaaacaat
     1441 aatgccttaa aagatcttgt agaaaaagaa gatatataca atcctattgt tgtaagtagt
     1501 ttggtttcta agctagaaaa tttagaaaat ttagagcttt tatatacttt aacttggcta
     1561 aaggctaagg ctttaaatta taatgctttt tattttagag ttcttgataa acttttagaa
     1621 aatgcaaaac aaggttttga agatgaaaat ctacttgaag aaagtgcaag aagggtaaaa
     1681 aaagaattaa cacttaaaag aagtaagatt tttttagagc aagatgaaat tttgcaggat
     1741 aaaatcatac atatcaaatc aaatcttttt attataaaaa atacttttga agatattgtt
     1801 atgatttcta aattagccaa agaaaatgat tttaaatttt ggtttagtaa tgaaacaaat
     1861 cttagtttgc aaattgttgc accacttcat tttaatattg ccattatttt aagttcttta
     1921 acaaatttaa atcttatttt catgaatttt tttgaacttt ttgatgataa aatttattta
     1981 aggtttgaat atgataatat tatcagtgat gagcaaaaac taaaactttg tgagctttta
     2041 aattcaaatc tttctggttt taatttgaaa aaaattaaaa agccaatcat taaaaaagag
     2101 gagttaaaat tagacttaaa ctattctaaa atgtatgcca aattaggtct taatactaaa
     2161 gatcagcagg gtttaatggc gtatttgatg aatgttttta atgaacttga acttgtttta
     2221 tgtgcagcaa aaattcaaac cataagacaa aggacgcgta atatttttat ttttcaaaag
     2281 aatgaaaaat tagaacatag cgagcaaaag ttagttaatt tattaataag tgagtaaaaa
     2341 aatgtgtgga atcgtaggct atataggaaa taatgaaaaa aaacaaatta tactaaatgg
     2401 acttaaagaa ttagaatatc gtggctatga tagtgcgggt atggcagtga tgcaagaagg
     2461 cgaacttagt ttttttaaag ctgtaggaaa gcttgaaaat ttggcgaata aatgcacaga
     2521 ttttgaaagt caaggttatg gttttgctgt aggtcataca agatgggcaa cccatggtaa
     2581 acctactgaa atcaacgcac accctcattt aggacagtat tcttgcgtga ttcacaatgg
     2641 tattatagaa aattataaag aaattaaaga taaacttgaa aaagaaggcg tgagtttttt
     2701 aagtcaaaca gatacagaag tgattgttca gctttttgaa ttttatgcaa gaaatttggg
     2761 agtttttgaa gcttggcaaa aaaccatcaa agaacttcgc ggtgcttttg ctactttgtt
     2821 agtaacaaaa aaagatccca atcatgtgta ttttgcaaaa aatgctgctc ctttgattat
     2881 cggtaaaaat gcaaataaag aatggtattt ttcttcaggt gatgcgcctt tgataggaag
     2941 ttgtgatgag gtaatgtatc ttgaagattt aagcttggga tacgcgagta aagatgagct
     3001 tgtcgtttat gaaaatgata ttttaaaatc actttgtttt tctaagcttt caggtgataa
     3061 ggcttatgca aaaaaagacg gctttcgttt ttttatggaa aaagaaattt atgaacaaag
     3121 tcgcgtgatg agtgaagttt taatggggcg tattcaaggc gatgaagtcg tttttgatga
     3181 gctaaacaat gaagatttaa gtcaagtaga tgaaatcacg ctttgtgctt gtggaacaag
     3241 ctatcatgct gcaatggcaa gtgcttattt gtttgaaaga attgctaaag ttaaagctaa
     3301 agtagaaatt gcaagtgaat ttcgataccg tgaagcaatt ataaaaaaag attctttatt
     3361 tatcgttatt tctcaaagtg gagaaacagc agacacttta gaggctttaa agattgcaaa
     3421 agagcagggt gctaagactt ttgcaatttg caatgtggat aattctaata tagtgcgttt
     3481 agcacatcta agtcttttaa ctcgtgcggg catagaaaaa ggagttgctt caactaaagc
     3541 ttttgctact caggttttaa cactttggat gcttgctatt tttatggcac aaaaaagaaa
     3601 tttaaatgtt tctgctgaaa ttaaagcact tttgcatact ccaaattgcg tgagtgtaaa
     3661 acaggcttta catgaaaaaa ttcatcgttt atccaagcgt tatttagatg gacatggctt
     3721 tttctttata ggcagagatg tgttttatcc tttggcttta gaaggagctt tgaaacttaa
     3781 agaattatct tatcttcacg ctgagggtta tcctgcagga gagatgaaac atggccctat
     3841 tgctttggct gattctaagc tttatactat agctttaatg ccaaagcaca tgctttatga
     3901 aaaaacaaaa tcaaatgttg aagagcttat tgctagggat tctacagtgc ttagcatttc
     3961 acctttagaa tttgatttaa gtgatgattt tataaaaacc aatgagcaag atcattatat
     4021 gtgtgaattt tttgaaatga tggtcattac tcaacttttg gcgatggaaa tttccataag
     4081 acttggcaat gatgtggata tgccaagaaa tttggctaaa agcgtaacgg tagaatagaa
     4141 atgaaaaaat ttttttgttt aactttagtt tgtaaacttt ttgctttaag cgaatttgaa
     4201 cttcatcata ttgataaagt acataagcta gggtatagtg gagatactat tataataggt
     4261 gtagccgatg atgcttttaa tcaagatcat attagtttaa aggataagat tttaaagtct
     4321 acttatccta ctgatacagc tgggaaacag cttatacctg atttgaaaaa atcaacacac
     4381 ggaagtcatg tagcaggtat agctgttgga gcaaagatag gcgatagcaa accttatgga
     4441 gtggcttatg gggcaaaatt ttatggagct ggggtgtttc caaatggctc ttacactcaa
     4501 attcctgata tttataattt tttcaaagat gtgagtatta ttaataatag ctggggtatt
     4561 aatttttatc cttattttaa tcttaaggct tcaaattctg gattagtaga ttgtactcaa
     4621 actaatcaag ggacaagcta taatatctgt aatactcctt tggaatatgt tatgaaagca
     4681 gataaggttg ctaatgatat gatgaggctt agcaaggaca agggagtatt aaatgtattt
     4741 gctgctggta atgaaggaat tcttagccct gctttgcatg cgattttacc aagttatgat
     4801 gaatctttaa gagcttggtt ggctgttgga gctttggatg caaatgagat tactttagaa
     4861 tcagatggga ctttaataat taaaagtcaa ggtttggctg attttagtaa tggttttaag
     4921 ggagctacga atttttcttt agttgctgct ggagtaaata ttaataatgt tgattcaagc
     4981 actaatgata agtttacaaa aaaaagtgga acttctatgg cagcacctat ggtaagtgga
     5041 acagcggcac tggtcaagca aaatttcccc tttttggatg gtaagcaaat tgctgatata
     5101 ctgttaagta cagcaaataa aaattataag gctccaaaat ttactgttaa acaagtaacc
     5161 gatggaacaa atcaacctaa atttcttatt gtgtatattt cgcaagatcc acctaggata
     5221 gaagatgaaa taaaacggga tttaaaacag ctttacaatg gaatacaagt tcaagttaat
     5281 ggacaatgga ttgattatag tgattatatt tgggataata gagatagtgc gcagtcacaa
     5341 aaacttaata cttctactat tagttctatt aatggagtag ttagagttga gaaagaagaa
     5401 ttatttggac aaggaatttt agatgcacaa aaggcgttaa aaggactgag tattttagat
     5461 gcaaacagac tcagtgatca ggatgtatta aaatatgagc aagaacctaa tacagcttat
     5521 tatactataa acactgcagg ttatgatgct gaattttcta atgatattag tcaaagaaaa
     5581 tgggatgaaa gtactcattt atcaagtgct attaataaac ctacacattt agctaatctt
     5641 aacataggat tatctaaaga aggtgaaggt attttgatta tcagtggtca aaatacttat
     5701 gagggtgcaa ctttaatcaa acaaggagaa ttaaagctta aaggaaaagt taaaaataat
     5761 gcttatgtag aacaaaaagc aatattaagc ggtaatggta ttgtagggca aaatttaaac
     5821 aataaaggca tagttagacc tggaaatgaa gatttgaatg atttaaccgt gcaaggaact
     5881 tatactcaag aaggagttga ctctaaattg caacttgatt ttggtaatta taaaaattct
     5941 aaactgattg caaaaactta tgatattaag agcgggaatt tagaatatat tcctttacct
     6001 aaatactata tcttaaataa gccagtgaaa attaatttag gagatttgga aaaaagttta
     6061 tcatctttta atcatgtttt gatacaaaat acctatgctt taaattttga ttttatttta
     6121 agtgatgatt tagtgagtat taataaaacc ttaataaaac ctaatttaaa gccaaatgcc
     6181 tacgaaattc ctaatacaag cttgggaaat gctttaagac aattgcgatc tagggcagac
     6241 ttgagtcaga cttatcagga attttttgct tctttagata atggaataga tgtaaagact
     6301 aaattaaata gaatagaagg ttcagggtat ttaagcactt ttagtaatca taatcaatct
     6361 aatttaatgc aaaataatat gttatttacc cttcatcctc ttaatattaa taattttgca
     6421 caaaacaata atatcttact tgctagtact tatttaccta gaatttttag caatgaagaa
     6481 tatttttggc atcttactcc aagttataaa tactataaag ataaagattt ttcaggtcaa
     6541 aaaacaggtg ctaatatctc tttaggagaa aatttctcat caggcttttt agcttatgct
     6601 ttatctcttt ctagcgctaa atttaatttt aataatggta gtgatttgaa gagttataac
     6661 atggatttat tgcttaatta taaccatgat ttagatttta taaaaatatt aagcggatta
     6721 ggtataggtg taggatttaa tactcttaat cgttttgtag tagagcagcc aattgaaggc
     6781 aaatataaaa cattgcaaac ttcagcccag cttggtgtaa ctaaagatat tattttaggt
     6841 caagatttta tttttaatcc tttaatgtat tttacacata gtttttttta tcaagaagat
     6901 tttaaagaaa ataaaagtcc ttttgctaaa aattatgaaa gtttaaaaca tcatagcata
     6961 aatgcaaatt taggttttaa tcttgctaaa aatatagagc aagatgatta tcaagcttct
     7021 ttttctactt ttgtaatttt tgaaaaaaga atttatggaa gaactttaga aaataaggct
     7081 agttttgttg attttcctat tacttttatt caaaaatata aattaaaaga taatatttta
     7141 agtcaaggtt ttaattcaga atttttatat aaaaacaatg tattttggca gtttatgtta
     7201 atgaatagat tttctcataa tgcctatgaa ttgcatttaa tgagttcagt aggaaaacgt
     7261 ttttgaaagt atttattttt ttagcttata ataaataaaa ttttaatcaa aggaaaaaat
     7321 tatggaatac agagttgaac atgatactat gggtgaagtt aaggtcccaa atgataaata
     7381 ttggggagct caaactgaaa gaagttttga aaatttcaaa attggttgtg agaaaatgcc
     7441 aaaggtttta atctatgctt ttgcaaatct taaaaaatct ttagctttag tcaataacaa
     7501 acttggcaaa cttgatgatg ctaagaaaaa tgctatagtt caagcttgcg atgagattat
     7561 cgcaggtaaa tttgatgata attttccact tgcgatttgg caaacaggtt caggcacgca
     7621 aagcaatatg aatatgaatg aagttattgc aaatcgtgct actgaaatca tgggcgggga
     7681 ttttcgcaaa gaaaagcttg tgcatccaaa tgatcatgtt aatatgagtc aaagttcaaa
     7741 tgatactttt ccaacagcta tgagtatagt tgcagttgag caagtagaga aaaagcttat
     7801 ccctgcactt gatgagctta ttgcaacttt tgaaaaaaaa gtaaaagaat ttgatggcat
     7861 tattaagata ggtcgcacgc atttacaaga tgctactcca cttactctag cacaagaatt
     7921 tagtggatat ctttctatgc ttttacattc aaaagagcaa atcatcgctt ctttaccaac
     7981 tttaagagaa cttgccatag gaggaaccgc agtaggaaca gggcttaatg cacatccaga
     8041 attaagccaa aaagtaagtg aagagctaac tcaacttata ggtacaaaat ttgtttcaag
     8101 tccaaataaa tttcatgctt taacaagtca tgatgcgatt aattttactc atggagcgat
     8161 gaaaggtttg gctgcaaatt taatgaaaat tgcaaatgat attagatggc tagcttcagg
     8221 tccaagatgc ggtcttggtg agcttatcat ccctgaaaat gagccaggaa gttcgattat
     8281 gccaggtaag gtaaatccta cccagtgcga agctgttact atggttgctg tacaagtgat
     8341 gggaaatgat gcagctatcg gatttgcagc aagtcaagga aattttgaac ttaatgtgtt
     8401 taagcctgtg attatttata atttcttgca aagtcttgat ttgttggctg attctatgca
     8461 ttcattcaat atccattgtg ctgtaggcat agaaccaaat cgtgcaaaaa tcgatcataa
     8521 tcttcataat tctttaatgc tagttaccgc tctaaatcca cacataggtt atgaaaacgc
     8581 tgctaaagta gccaaaaatg cccataaaaa aggtatttct ttaaaagaaa gcgcaatgga
     8641 gcttggtttg gttagcgaag aagatttcaa taaatttgtt gatcctacta aaatgatagg
     8701 ctcaaaagcc tagaacatca aacttgcctt ttttaaggca agttaaatta aattcttatc
     8761 ttttaaaatc acatacattc ttaaagttga tacaaaaaag gttaaaatcg caggacctaa
     8821 tataataccc caaaaaccaa aggtagaaat tcctgctatc atagccaaga aaattaaaag
     8881 ttcattgatt ttagtagggg tttttacaag ttttttgttg atccatttga tgattaaagg
     8941 tttgattaaa gtatctgcta taaaagaaat tacaattaca gaataaataa aaataacaag
     9001 agctgagtta agattgtttg aggcaaattc ataaagactt acaggcatat aaattaaagc
     9061 acctcctata gcaggtatga gagaacttac agcaaaaatt actcccatta aaattccatc
     9121 ataaccataa aatattgtga ttaaaccaaa aagcgcacct tgaaatatcg ctacaatcac
     9181 catagagtaa agtacaacag ccataacatt acccacttcg cttaaaacat catcaagttc
     9241 ttttttatca ataggaatga tggatttaag atagataaca agttctgttc catatagatt
     9301 tgcaaagaaa taaaatacgc aaattaaaac catatctata agaaatttag ctcctgattt
     9361 tgtaaaactt gaagcataac ttagaatttg tttagaaata ctatttaaat ctatagaagc
     9421 taaaaattct ttgattttag gttctaaaaa attaaagctt tcaggcaagg tgaattgata
     9481 gtttttgaca taatcaagtg tttgtgtaac taaattaata tcaaaattct ttaaagcttt
     9541 ggcaagttct atcatggcat aaacaaaagg tgcaaagaaa agcaaaacca tacaagctgt
     9601 tgtaagaatg gaagctaaaa atttatgtcc tttggtaaga tttaaaaatt ttgcattgat
     9661 gtttgaggta gctaccgcca ttaaactagc tatgataatt acaagtaaaa aacctttaaa
     9721 aaggtaaagt aaaagaaata aaataactaa aataaagctt ataagaaaga attttccatt
     9781 ttgcaaaatt tactcctcaa ataaagtttt ttcatagttt agttttaaag cactataact
     9841 ttttgcactt gctatacgcc cttttgcagt gcgttctata tagccattag ctagtaaata
     9901 aggctcgatt acatcttcta tggtattttc atcttcactt aaagccgcag caatgcttgc
     9961 aagtccgata ggtttttgtt tagcagcagt taaaagttca agatatctta aatccatcgc
    10021 atcaaaacca agctcattca ctcctaaaga atttaaggcc tcattagccc ttttttctgt
    10081 gataatctct tcatcattaa catcagcaaa atctcttacc ctttttaaaa gccttagggc
    10141 tattctaggg gttgaacgac ttcttttagc gatctcaagt gcggcttttt cttcgcaagt
    10201 tttattaagt tttaaagctg ctttttgcaa gatgagagca agttcgctat ctttgtaaaa
    10261 ttctaatcta aattgcatac caaaacgatc tcgcaaagga ttactaagca tacctgcacg
    10321 cgttgtagct cctataagag taaattttgg taaatcgatt tttatggttt gagcagctgg
    10381 accactacct atgataatat caaggcggta atcctccatt gcagggtaaa gcacttcttc
    10441 gatagcaggg cttaagcgat gaatttcatc aataaaaagt atatcccctt cgctaagatt
    10501 ggttaaaata gcggctaaat ccccgctttt ttctatcata ggagcggccg ttgttttgat
    10561 atttgcaccc atttcatagg agatgatatt agctagtgtt gtttttccaa gtcctgcagg
    10621 accactaaaa agtatatgat ctaaacattc attgcgtttt ttggctgcag ttataaagat
    10681 atttaaattt tttttaatgc tttcttgacc tatataacca tcaaaatttg aaggacgtaa
    10741 cgaagtttcg taagtttcat caaaggagta tttttctatt tctactattc tatccatatc
    10801 tttgcttata ttttggaaaa attaaaataa gattttagct aaaatttgct agaatttaca
    10861 ttaaacttta atgattatgg tttaaaaatg ggaattttaa caaaattaga attagattat
    10921 gaaattgacg atatagaaaa atttttacaa ttttttagaa ccatgtgcga taggtttgaa
    10981 cctttaatca tcaagcttgg aagcgatagc gtgcgttata aagaggctat aaaagagctt
    11041 gaaactttag cacacaatac cgcttgggca gcaagacgtt taaatcttga agaagtgact
    11101 gatttttgtg tattttgtga agagatgatg gcgcaagcaa atcgctttaa cgggcctgct
    11161 agtgatgaat ttacggattg gatgcttttg atgagtgatc aatttgaaaa atattgtcgt
    11221 tcgtatgaaa atgatgattc tgttttagcg gtttttaatc ctttaattgt taatgttcca
    11281 aatattattt ctaaataagg gagcgacttg gcttcgacag gagtaagtct gcttagatgg
    11341 catgtcgctt tgggcaaagc gtaaaaagcc caaataaaat taaacgcaaa caacgttaaa
    11401 ttcgctcctg cttacgctaa agctgcgtaa gttcagttga gcctgaaatt taagtcatac
    11461 tatctagctt aattttcggt catttttgat agtgtagcct tgcgtttgac aagcgttgag
    11521 gtgaaataaa gtcttagcct tgcttttgag ttttggaaga tgagcgaagt agggtgaagt
    11581 agtcatcttt gctaagcatg tagaggtctt tgtgggatta tttttggaca ggggttcgat
    11641 tcccctcgct tccaccatca cgctaatttt aagtaaatca taagtttatt tcaaattttt
    11701 agaatttttt atatgaagtt aagaatgatt tattaccgtg agcgttggca tatcaaaagg
    11761 gacttatatg attggtggct gcggaaaata aaagagggag cttctgtagg gcatagatac
    11821 agctgccttt gcgttttggc gtcctatgcc gttaagtgcg atattccgga agatgagctt
    11881 tttacggacg ctttttccct attgcagttt cttgatgata tgtcagatga tgagcataac
    11941 cgttttacta agcgtgatat aatggacgct atgcagtttt atcaagaaaa ttatgtcaca
    12001 tatagtcgaa gtgaagcgga aagagtatcg gctattccta tgccagcgaa taaaaggaat
    12061 taccaaaaac aggctgatca cttagaaaaa gcaagggcaa ttcgtgatat tcgtatgaaa
    12121 agacaggata gggattggag agagggaaat ggtagaccaa aaggcagcgg agaaaagtcg
    12181 aagattgtcg aagaatggca gcgtcagcac ccggacggaa agaaagcaga ctgcatacgg
    12241 gagacaggat tgagcaagcc cacagtttac aagtggtgga agtagggcat acttgaaatg
    12301 ccgaaaggca tatggtataa tgccagtagg cgaaaatgac agaagtgctc atgtggcaca
    12361 gcaaaaagcc ccggaggtcg caactccggg gcttttctat tccgttctgg gtgggtggct
    12421 taatcccaag gctggctacc agttattctt ctccgtccaa ccatttgcag atgtagtagg
    12481 caactacact tgccaaaaca gagagaaaaa atgacagaag ttcactcatg cggttcaccc
    12541 cctttctcta cctgtctggg ggcggtagcg tcgttcatta tatcacaggg gcagaaatgc
    12601 cacaagaagc catttcccct tgtttatcat caaagccata aggaaaagag tgtcaagggc
    12661 ggtcatagac cgcagcgttt acccttgata ctcttttttg ttggctataa tgccggaggg
    12721 gaaaacggct attggagtta tttacccagt gataggagta tttatcactg ggtattttta
    12781 tgcccttttt tgggtgttga taggaggaaa atcacatgaa aataattaac ttaggcattc
    12841 tggctcacgt tgacgcagga aagacaacat taacggaaag tttattgtat accagtggtg
    12901 caattgcaga actagggagc gtagatgaag gcacaacaag gacagataca atgaatttgg
    12961 agcgtcaaag gggaatcact atccagacag cagtgacatc ttttcagtgg gaggatgtaa
    13021 aagtcaacat tatagatacg ccaggccata tggatttttt ggcggaagta taccgttctt
    13081 tatccgtatt agacggagca gtattattag tttctgcaaa ggatggcata caggcacaga
    13141 cccgtatact gtttcatgca ctacagataa tgaagattcc gacaattttt ttcatcaata
    13201 aaattgacca agaggggatt gatttgccaa tggtatatcg ggaaatgaaa gcaaagcttt
    13261 cttcggaaat tatagtgaag caaaaggttg ggcagcatcc ccatataaat gtaacggaca
    13321 atgacgatat ggaacagtgg gatgcggtaa ttatgggaaa cgatgaacta ttagagaaat
    13381 atatgtcagg gaaaccgttt aaaatgtcag aactggaaca ggaagaaaac aggagattcc
    13441 aaaacggaac gttatttccc gtttatcacg gaagcgctaa aaacaatctg gggattcggc
    13501 agcttataga agtaattgcc agtaaatttt attcatcaac gcctgaaggt caatctgaac
    13561 tatgcgggca ggtttttaag attgaatatt cagagaaaag gcggcgtttt gtttatgtgc
    13621 gtatatatag cggaacattg catttgaggg atgttattag aatatctgaa aaagagaaaa
    13681 taaaaatcac agagatgtgt gttccgacaa acggtgaatt atattcatcc gatacagcct
    13741 gctctggtga tattgtaatt ttaccaaatg atgttttgca gctaaacagt attttgggga
    13801 acgaaatact gttgccgcag agaaaattta ttgaaaatcc tctccctatg ctccaaacaa
    13861 cgattgcagt aaagaaatct gaacagcggg aaatattgct tggggcactt acagaaattt
    13921 cagatggcga ccctctttta aaatattatg tggatactac aacgcatgag attatacttt
    13981 cttttttggg gaatgtgcag atggaagtca tttgtgccat ccttgaggaa aaatatcatg
    14041 tggaggcaga aataaaagag cctactgtta tatatatgga aagaccgctt agaaaagcag
    14101 aatataccat ccacatagaa gtcccgccaa atcctttctg ggcttctgtc gggttgtcca
    14161 tagagccgct ccctattgga agcggagtgc agtatgaaag cagagtttca cttggatatt
    14221 taaatcaatc gttccaaaat gcggttatgg agggggttct ttatggctgc gagcaggggc
    14281 tgtatggatg gaaagtgaca gactgtaaaa tctgttttga atatggattg tattatagtc
    14341 ctgtaagtac ccccgcagac tttcggctgc tttcccctat cgtattggag caggctttaa
    14401 aaaaagcagg gacagaacta ttagagccat atctccactt tgaaatttat gcaccgcagg
    14461 aatatctctc acgggcgtat catgatgctc caaggtattg tgcagatatt gtaagtactc
    14521 agataaagaa tgacgaggtc attctgaaag gagaaatccc tgctagatgt attcaagaat
    14581 acaggaacga tttaacttgt ttcacaaatg ggcagggagt ctgcttgaca gagttaaaag
    14641 gataccagcc agctattggt aaatttattt gccaaccccg ccgcccgaat agccgtatag
    14701 ataaggttcg gcatatgttc cacaagttag cttaacagct tgcaaaagtc atataaaatg
    14761 agatttgaaa ggattagaga ctaattatga tgaaatgcga atggatattg tgtcctgttt
    14821 gtgggagcaa aacccgtaat aaaattagga aggacactgt tttggagaat tatccccttt
    14881 attgtccaaa atgcagacaa gaaagattga ttaaagttga caacttgaag ataactgtca
    14941 tcaaagagcc agacgcttaa gacgcagagc cgatgaaatt gtggaacaat tcacgaatca
    15001 tcggctcttt ttgtttcgta tttgaaagaa caaactcacc aaataaaaaa aacgatattc
    15061 gggtgggtta ttttgttata ccctaaatta ccctctgaat ttgtttttaa atttggaggg
    15121 atttttttat gtcctttttt cgggcagtta tctatctgct catacgaagc aaaatttatc
    15181 aatacatagc atatcagaga acggcaggaa accagttaaa aaaatttctg ccagtgcaac
    15241 ggtacttctc accttgaaag tagaagtaca atctccatac aatagaatta ctatttccta
    15301 taaccgtaaa ggtcacagag cctttgcggt ttttcttttg tcgatttttg ttggaaagtg
    15361 ccgtagggct gtttctgata tgcggtgtcg ttctccgcct ctccatctgg attttttaca
    15421 tttcaaaaat tcagatggga ggtatttatg gtgaaatatg caccaagaaa ggtatatatc
    15481 agagaaagtg gcggctatgt ggaattatcc tacacggagt tctgccgttg cagggaatcc
    15541 gaccagacct tgaagcacag ggggaagtaa cggaacggac ggacagccct taaaattttg
    15601 atatattggg ttttataatt tttcattaaa aatttatagt tttattttta agcttatttt
    15661 tagggggggg gtataattat tccttcagtt taaatttatt gaaggagaaa cttatgaaga
    15721 aaaatgcttc gagcaagata ttgctaagtt taggtgtagc aactttgctt tattcgagtg
    15781 cttttgcaca agaacaaaat attaatctta cagagtcttc agatatagga aaatattttg
    15841 aagaaaatgg taaggatatc aatcttaaaa atcctgatga ttacaaagga aaagatttaa
    15901 gtatcacaat gggtgtttgg gatttaccaa acgatgatta tgataacgct gattatcgat
    15961 tgaacattga tatcggtaaa aacaatactt taagctttac acacaataat ggcgaaaatc
    16021 ctgcttatgt aacaaatcta aacgctactg ctcaagaggt taaaacaaca gatatagttt
    16081 tacaagcttt tgcaccttcg gtgattaatg gaaatttaac tatgactagc tcagggagtg
    16141 aagccattac cgaagatgaa aaaaaaggct caggtataat tctttataat ggaacagttg
    16201 aaggaaaaag tgctaatggt agcttaacta taaatggaaa ttttactgcc gataaaaccc
    16261 tttttgctac ttatggaaat tttgttaagg taaatggaac tgcaaatctt acaaattcaa
    16321 attttggact tatcaaacgc tcttatacag acttagaagc aaataatgta gtaatggttc
    16381 aagctaaaga ttttaacaaa gatatcttag aagaaaaatc aaataataac gcaggtgcat
    16441 tacttgtaaa atttttaaat gattatgttt caactgatct tcatggcaaa gatgttatag
    16501 aaacaggagc tgttatagat attagcgatg aagatgaata cggcgatgga aaaaaaggct
    16561 tagtagatta taaacttagc gttcaaaact gcggtggcaa taaatgcttg gtagttaatg
    16621 gaggtgctac tgcagcagct aaagataaac tcacgcaact taaagtagat ataaatgcta
    16681 tcgataaatt gcttaaaaat gaatttgatt ctagtcaaga tgaagaatgg aaacaagcaa
    16741 aagaagctct tgaaaaacaa aaaaccgaac ttgaaaaact tcaacaagaa gctatgcaaa
    16801 acggcggtaa aatcgatgat gaaaaataca ttgatttagt aaataaaaac ttaaatttaa
    16861 atcttagtgc taatgataaa gcttctatcc tagcacttcg ttctatcaca gaacaattag
    16921 gaagtatagg agcagattta gcaagtagag aaggtgtaaa actagcttta gatatcaaaa
    16981 aagacacaga caacacaggt aaatctgtat ctaatctaaa ttcagcttct agtgcagtta
    17041 ataccactat gaatatttct aatgatgttt ctataggttc tcgtgtagca atgctaaaca
    17101 atccttttgg aacttatgct tctaaaatga atggtcttaa atttgctgct ttagatagtg
    17161 atatgagacc aagctatgta aatgaatata ccaatagtgt ttgggctaat gcttttggtg
    17221 gtgctaacat tatcgatgga gatagtggtg caatgtatgg tgctactata ggtgtagata
    17281 aacaagctaa tgatgatgtt ttatggggtg cttattttac ttatgcaaac gctaaaatca
    17341 aagacaataa tttagaacaa aaaagcgata acttccaatt aggtatgtat tctactatca
    17401 atatagctcc acaatgggaa cttaatctta aagcttatgc tcaagtttct ccaactaaac
    17461 aagacaatgt tcaaacagat ggtgcatata actcagatta tacaagcaaa ttcttaggac
    17521 ttagcgctaa tgcaggtcgt gtgtttgact ttagtgataa tactttattt attaaacctt
    17581 ttgcgggagt aaattattat tttagttata ctccatctca tacagaaaat ggtgctattg
    17641 ctaaagatat tgattctatg aaaaacaatt ctgtaagtgt tgaagtgggt gctgaattta
    17701 gaaaatatat gaatgaaaac tcttatattt ttgtaactcc aaaaatagaa caatttgtta
    17761 tcaatagtgg tgatgattac acagctaacc tagctgtaaa taatgctttc tttactagtg
    17821 tagaagctaa caacaagaaa aaaacttacg gacaaattat cgtagggggt aatgtagatt
    17881 ttacaaatca actcagtatg aatcttggct ttggtgctaa acaaatacta gcaggtagag
    17941 tagatagcaa aaatgaaact tacttaagtg gtcaagtagg acttaagtat aaattttaat
    18001 cttaaaaatc atttctaaat ctttttatag tttagaaatg attgtttatt tctatgggaa
    18061 atctcctagg gctttatctt aaagcccttt tataacaaac aagtaaataa gtctttagag
    18121 taaaaaccct aaaaactttt agttttcttt gaaaagttta gaagctaagt gcgttgcacg
    18181 actttgatct gtatcttttt taagtgtttt ataaatttta cttacatatt cttctaaggt
    18241 ttgttgagaa tctatgattt tttcagaaga aggaattttt tcatattctc cattgttttt
    18301 aagctcataa gctaaaacat tatcactaag ttgtaagcgt aaaaattgag ctaatttagc
    18361 tttatttctt tcatcatata taggagtcat aagctctaag cgacgctcta aatttcttgg
    18421 catccaatct gcgctcgata taaaataatt tggttcacta tgtttaaaat aaaatactct
    18481 agcatgttct aagtattttc ctatgatgct tctaacgcgt atgtttttgc tgtattcttc
    18541 atcaggtttt aagcaacaaa ttccgcgtat gataagatcg atttgcactc cttccatact
    18601 tgcttcataa agcgcttgta tgatatcact atccacaaga gaattcattt tagctacaat
    18661 cacaccttca tttttcttgc ttgtttcaat gcgtatcatt tctaaaactt tttctttgat
    18721 ttgatttggg ctcattgaaa gagtttgaag gcgacgattt ttactaaagc ccgataagat
    18781 gtgaaaaaag cttgtcgtat ctcttgcaaa ttctgctttg cttgtaaaat aactcacatc
    18841 agtatagatt ttagcactgc ttgcattata atttcctgtg cttaaatgca tataaaattt
    18901 aagtttatct ccttgtttgc gtatgacttg agaaacctta gcatgtactt taaaacctgt
    18961 aatgccataa ataacatgag ccccggcatt ttctaaagct ttcgcccaat gaagattatt
    19021 ttcttcatca aagcgtgctt ttaattctac catcacagtt acttgttttc catcgcttgc
    19081 agcatcaatt aaagcttgaa ctatattgga atttttttca actctataaa gtgtcattct
    19141 tatggaaatt acttcaggat ctttgcttgc ttctttaata aatttataaa ctggatcaaa
    19201 actttcaaaa ggttgtatga tgagtatatc ttctttttct acagcatcaa aaatagataa
    19261 attctcatca aaaggtggta aagttttagg cgtgtaaagt gggcttaaaa gatgtgtaaa
    19321 ggttttattt cctgcgattt gccaaaggct agggagatta agtaagatag aatattcata
    19381 aacatcttta tgaaaaattt tcatgtgagt attaaggaat tctacgattt gttcatctgc
    19441 atctttttga atttgcaatc ttacaaaagc tccttttcta cgaagtttta agccttgctc
    19501 taaaatcatc ataaaatcat cagcttcttc ctcttctatt accatatctg catttctagt
    19561 cactctaaat gctgctgaag ctaagagttt atagcctgga aaaatttctt ctgcgtgttg
    19621 atggactata ctttctatag gaacataaat atttgcactt acttcataaa aacgaggtaa
    19681 aactctcgga attctaatca ttccaaattt tacaagttca ggatgcgctt tatcgcaaat
    19741 tttaaccgct agtgaaaaag ataagttgtt taaatgcgga aaggggtgag tagcatcaac
    19801 agctattgga acaataacag gaaaaatatt ggagaaaaaa tactcatcac atttttgttt
    19861 taaattttca tctaaatttt cataatgttt tatgaaaaga ttttcttttt ctaattcact
    19921 tgtgatttca ttaaaataac gctccaaaag ctctttttct tgatgtaagt atttgcgtat
    19981 ggcttttaat tgttgtaacg gggtcatttc atcgctactg cttgcattaa ctccagctga
    20041 aaaaagttgt tttaagcctg cgacgcgtat catataaaat tcatctaaat tagtgcaata
    20101 tatagctata aattttaatt tttctaacaa gggtaaattt ttagaacatt ggtctaaaac
    20161 acgagaatta aagcgaagcc aagaaagttc gcgattgata aacatatcag gacttgtttg
    20221 cattaatttt tcctttttta gttgtatttt atcatttatt ttgaaattat tgaataaaag
    20281 ttttaaattt ttta
//
LOCUS       DBBXPZ010000025        20124 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.026, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000025 DBBXPZ010000000
VERSION     DBBXPZ010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20124)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20124)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20124
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.026"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..699
                     /locus_tag="ACJFD7_000733"
     CDS             <1..699
                     /locus_tag="ACJFD7_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0814 family flagellar-dependent secreted
                     protein"
                     /protein_id="HGG0859571.1"
                     /translation="YAINGIKSMDFNDPGNRMNITHLRDFSNSSIANIYQTPEQMKEA
                     ESLYIQSGSLIDGINGHSFGLSLEEIKNVSKGEDWQFNPDMSVYPQNEDGSYSKEALF
                     MSFLKSYGSGQPVESPKTTLNPKVEAYNRAMAKESFNGDSIALNDIMTGKVDFASLLK
                     GYAQDGWLDADIYAMEKGVAWQNTSIGYGGALFDNQFNQAKANGWKASSESINSYVGS
                     IMDRLNNLIGQTRV"
     gene            complement(757..2184)
                     /locus_tag="ACJFD7_000734"
     CDS             complement(757..2184)
                     /locus_tag="ACJFD7_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HGG0859572.1"
                     /translation="MLINTLYFINSLFFNFCIAFYLMSTLQWYSYKFKRVFFHYHKPL
                     WHLYFLFIPYFLFLAFPLYSLAYFALIHTLILYFWNKGIDKKLVFTSKVKWFFVFVFV
                     YNAIFAILALRFSFLFNLFSLPFALLSLKIYEFFTNLYYKKQAKAKLRANENLKIILI
                     TASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDTQIYIAEAGAR
                     LKGDIDEITHFLQPQISIVGEIGNAHLEYFKSVENIRSTKLEALNSKRLEKAFLHSST
                     QKEEDKLISLYDDKLSLIHSSLEGLEFKVDIENKSYDFKSQILGDFNAQNLCVCILCA
                     HYLGIKLEKIQKQVLNINSVEHRLQVLSREPKFIIDDGFNGNFKGMSTSYKLCKSYKG
                     RKVLVSPGIVEVSEEENIKLAKIINECFDLAIISAQINAEIFKKELKIKTIILKEKSQ
                     LVQTLAKETKHGDLILFSNDAPSFM"
     gene            complement(2185..2904)
                     /locus_tag="ACJFD7_000735"
     CDS             complement(2185..2904)
                     /locus_tag="ACJFD7_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HGG0859573.1"
                     /translation="MAQTQLSYKNKTYQISYEILGDLSLPQILILHGWGANKELMKQS
                     FCPFLKDFCQIYMDLAGFGNSSVEEILNTQDYANITELFLKQKKLNVCFFMGHSFGGK
                     VSTLLAKEKDTLILLSSAGILAKKSPKVRFKIRIFKILKLFGFGKFYRYFASKDGASL
                     SPMMYETFKKVVDEDFSEIFAKQKAKSLIFWGKSDEATPLYCGEKMHQFLKNSTFYPL
                     EGDHFFFLKHSAFIAQKIKEI"
     gene            complement(2906..3121)
                     /locus_tag="ACJFD7_000736"
     CDS             complement(2906..3121)
                     /locus_tag="ACJFD7_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HGG0859574.1"
                     /translation="MLSFKQDEIYTATEVVRNFSPIMEKLKKSESGKIVILKNNKFEA
                     VILSMKEFERLQNAMQLLENIYKNQKA"
     gene            complement(3181..4221)
                     /locus_tag="ACJFD7_000737"
     CDS             complement(3181..4221)
                     /locus_tag="ACJFD7_000737"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HGG0859575.1"
                     /translation="MKFAILFGGNSYEHEISIVSAVVLKKVINQNLEFIFCDEERRFY
                     HIPSEKMNSKTFSTKAYKKEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDG
                     KIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSKEKLS
                     FPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI
                     NDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEANLSEELKEKLKDSFKKIYNPLF
                     KGALIRCDFFILDNEIYLNEINPNPGSLANYLFKDFSTTLNALADQISLEKMIKISYN
                     FLHSINGQKGKL"
     gene            complement(4231..4782)
                     /gene="ruvA"
                     /locus_tag="ACJFD7_000738"
     CDS             complement(4231..4782)
                     /gene="ruvA"
                     /locus_tag="ACJFD7_000738"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HGG0859576.1"
                     /translation="MVVGIEGIITKKEPAFIIVKCASGLSYGIFISLFCSAKIQTQEK
                     HEFFITQIIKEDSNKFYGFLDKDEQKIFEMLLKVNGVGANTAMAVCSSLDVNSFYKAL
                     SLGDESMLKKVPGIGPKSAKRIIVELSDTKTKLENVSDDKSEALAALLTLGFKQEKII
                     SVLASAQATGTSELIKEALKKLG"
     gene            complement(4758..6617)
                     /locus_tag="ACJFD7_000739"
     CDS             complement(4758..6617)
                     /locus_tag="ACJFD7_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein A"
                     /protein_id="HGG0859577.1"
                     /translation="MALDEKIIAYTENPARELLSVASRTNLSLNELDFSLLAFSTQYR
                     FGDLEWEKISEKELTLFDKDEIFLKNDLQIKQEYKIEIFHGINQSKASQAVKLVANKN
                     LTKIVAQIDFTNLDFHEKLALELLQNIYKKMLKLKFLIGIRIFDFKKNLMSFCNQHKN
                     TPLNKTIQITVAQGIDPIESQDESLILTYKEKTKNYTIDEKRSGIIVVDENEVVLKHA
                     KFKQGKEGKDLNLHTLKVLAANENKVKFSCSSAFKQVEQDGYTEYIALKKGYVVQDGE
                     KFDIANELDFNGVDFKNIGIIRAGLDKNVKINIKFLSEVKDAVNSGVGIECEELNVVG
                     SVGSNTQLNATKMKIEGTTHSKAKIQAKQAYIKTHRGFVEAEILNIDLLEGGTIKAKE
                     VRIKKSLGGNIQADKIYIENLESNNSCVFFENTTIERINGDNNKFHAKIKTLDSNYDE
                     EFAILGEQISKLNHKMNKIRQYILSSKNGILSVEKKITELKNQGQNVPIQYEKALKDF
                     SLQNLELNKLQNEEKELLERKKSLQLELINLQKMLFEATFINKSGKWTDMNEIKFSLL
                     EPKEDIFYSSFVNESAKFIGIKKVIQNNQESIEIHKKLDYEEKDIAWLSASKE"
     gene            6721..8172
                     /gene="murJ"
                     /locus_tag="ACJFD7_000740"
     CDS             6721..8172
                     /gene="murJ"
                     /locus_tag="ACJFD7_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0034204 - lipid translocation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HGG0859578.1"
                     /translation="MKSLVFKNFIINALGILFSRILGLARDVLIALFLGAGLYSDIFF
                     VALKMPAFFRRIFAEGAFGQSFLPNFVKAKKKGAFCVSVMMQFSLIVFLFCLLVSFFS
                     SFFTKLFAFGFNADTIALAAPLVAINFWYLFFIFLVTFLGAILNYRQKFFITSFSAAL
                     FNLSIVIAAFFVDKNAPQNTLYYFSYATVLSGVAQLILHLLVLKNNPVIRAMALSIKF
                     KKAKAKLQGFYGNFFHGVLGSSATQFSSLLDTTIASFLMSGSISYLYYANRVFQLPLA
                     LFAIALTQVSFPKILKHLKSGQENLALKFMQRALALLSILLIASSIVGSVFALEISKL
                     LFERGNFTHEDSVITAYVLIAYLIGLLPFGLQKLFSLWLYAKFKQKTAAWIAVKSLII
                     SALCSMAFIFLIKDESLKVIAVALSSSISAFYLLGANIKEFGFKKFFALISIKICLLV
                     IVALIVFTILLILIKPYILSFFIGIFTSFKGVF"
     gene            8172..9560
                     /gene="cysS"
                     /locus_tag="ACJFD7_000741"
     CDS             8172..9560
                     /gene="cysS"
                     /locus_tag="ACJFD7_000741"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HGG0859579.1"
                     /translation="MRLLDSVTKEKIKLDKKDISIYLCGPTVYDDAHLGHARSSVCFD
                     LLRRVLLAQGNRVKFARNYTDIDDKILKKMAQSGQTLEEITEFYIKSYEEDMRVLNVL
                     DPDFKPRATHYITAMLDLIKKLAKDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENIS
                     RLSNEVQKRNESDFVLWKFDENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGI
                     DLLFPHHENEAAQCRCGCKRKLANIWLHNGFVKIDGEKMSKSLNNSFFIKDALKEFMG
                     EALRFYLLSSHYRSHFNYSLLDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIEIKS
                     EIAKQILEILNDDLNVSKALALLDDFINNANLELDKESKNKILKQNIKEALSELAKIF
                     GFGFMDTTLYFQWGVSKEEREEIEKLILERTEAKKSKDFNTADTIREQLSSKKITLLD
                     TPNGTIWEKINA"
     gene            9553..11295
                     /locus_tag="ACJFD7_000742"
     CDS             9553..11295
                     /locus_tag="ACJFD7_000742"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0859580.1"
                     /translation="MHNEMNLKEVLIRFKPFYKRYWKQFAIAIFGMILASGGTAGSFY
                     ALEPILNYIFVEKNEALLYTVPFLLVLMYFFKNLGTYLQSFYVSFIGTDMLRVLRARV
                     LKNVLRLDMDFFKRYRSGELVSRCTNDINALQSIVSNIIPDFFRELLTAIGLLAVVLY
                     QSPTLAFFALVILPLAIFPLVWFAKKLKKYARNIQETNSDLLSYLGEIFSNIELIKAN
                     DNEKKESDKFAKHNDTLCKLNLKSARIDALTSPLMDMMGSVGVAVVIIVGGREVINGS
                     MSVGSFISFVSALFAIYTPLKRLSSLYGKLQGAVAASERTFYLLDLEPQIKGGSKELK
                     NIEKISFENVEFAYENPHKSVLKGVNFDFVKGQMLALVGTSGGGKSSIINLLMYFYEK
                     QKGKILLNQEDIGTFTIESLHAKIGLVTQNIYLFNDSFAANIAYSEELEEEKVIQALK
                     LANAYEFVKEMGGIWAEVKEHGKNLSGGQKQRIAIARALYKNPDVLIFDEATSALDNE
                     SEKAIVKTIENLKQDRLILVVAHRLSTIENADKIVVLDKGKVLAIGKDEELLQTCSLY
                     QKFKSKEKTKPSFS"
     gene            11326..12384
                     /locus_tag="ACJFD7_000743"
     CDS             11326..12384
                     /locus_tag="ACJFD7_000743"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HGG0859581.1"
                     /translation="MAYEMIKPLLFKLNPEHAHALVEYSLRALSASFPGALSFLAYKY
                     IVDDESLRQNLLGLDFNNPVGLAGGFDKNATMIRPLSALGFGFLEVGTFTPKPQEGNE
                     KPRLFRLVKQESIQNAMGFNNEGAEKIALRLAKTYPFVLPLGVNIGKNKITPNDKALE
                     DCFTLFRDFKDLCDYFIVNISSPNTKNLRELQNDDFLNTLLEEAKKITSKPILIKIAP
                     DMKIDDALNLCENAIKKGADGFILANTSVDYSLLDNNRTFGGISGRLITEKSGIFFKE
                     VAKILFGKTLLIASGGIDSADIAYERIKNGANLVQVYTALIFKGPSLVKNINQNLIEL
                     LRKDGFLHISEAVGVNLK"
     gene            12381..13631
                     /locus_tag="ACJFD7_000744"
     CDS             12381..13631
                     /locus_tag="ACJFD7_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M16 family metallopeptidase"
                     /protein_id="HGG0859582.1"
                     /translation="MIAYEKIQLKNKLEVYALPVNKNSDVISVDIFYKVGSRNEIMGK
                     SGIAHMLEHLNFKSTKNLKAGEFDEIVKGFGGVDNASTGFDYTHYYIKCAKKNLDKAL
                     ELFAELMENLNLKDEEFQPERAVVLEERRWRTDNNPLGYLYFRLFNHAFMYHPYHWTP
                     IGFFKDIENWSIEDIKEFHSIYYQPKNAILLVSGDIESKEVFELSKKHFEKIKNTKTI
                     PKIHTKEPKQDGAKRIYLHKNSDTELLALAYKIPNFKHKDIPALNALSELLGSGKSSL
                     MSEILIDKLNLINDYYAYVNDCIDDNLFIFICNCNPNVNAEKVEKELLKIIDKLKMGK
                     ISQKDLQRVKNNVKSDFIFSLNNASAVANIYGSYLARGDINPLLNYEKDIQNLELKDL
                     ISCAKKYFIQENSTTVILRKDSNG"
     gene            13624..14520
                     /gene="dapA"
                     /locus_tag="ACJFD7_000745"
     CDS             13624..14520
                     /gene="dapA"
                     /locus_tag="ACJFD7_000745"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HGG0859583.1"
                     /translation="MDKNIIIGAMTALITPFKNGKVDEQSYARLIKRQIENGIDAVVP
                     VGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGAD
                     GILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCE
                     NIYGVKEASGNIDKCVDLLAHEPRMMLISGEDAINYPILSNGGKGVISVTSNLLPDMI
                     SALTHFALDENYKEAKKINDELYNINKILFCESNPIPIKTAMYLAGLIESLEFRLPLC
                     SPNKENFAKIEEVMKKYKIKGF"
     gene            14520..15299
                     /locus_tag="ACJFD7_000746"
     CDS             14520..15299
                     /locus_tag="ACJFD7_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HGG0859584.1"
                     /translation="MNTEFQGKTLVISGGTRGIGKAIVYEFAKVGANIAFTYNSNAQI
                     ADEMVQDLEKNYKIKARAYEFNILEPETYKELFEKIDVDFDRVDYFISNAIISGRAVV
                     GGYTKFMKLKPKGINNIFTATVNAFVVGAQEAAKRMEKVGGGSIISISSTGNLVYIEN
                     YSGHGTAKAAVEAMARYAATELGEKNIRVNVVSGGPIETDALRAFTNYEEVKQATINL
                     SPLNRMGQPEDLAGACLFLCSSKASWVTGHTFIVDGGTTFK"
     gene            complement(15340..15645)
                     /locus_tag="ACJFD7_000747"
     CDS             complement(15340..15645)
                     /locus_tag="ACJFD7_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859585.1"
                     /translation="MELDQILLYTFIFLNLFALFGLFLGNKKKNQFNDKKFYKICPCK
                     KMAENGSLSTICIYSAVGGFFYSVLSIGFIGFGNWTLNFIFLLALLSVFLGWKLKLD"
     gene            complement(15657..16253)
                     /locus_tag="ACJFD7_000748"
     CDS             complement(15657..16253)
                     /locus_tag="ACJFD7_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HGG0859586.1"
                     /translation="MQIIKQACGAYETNCYILFGEHGEIIIDPGFDALNFIKKHVKNP
                     LAILNTHGHYDHVWDNEKVKQAYQIPIYIHKNDTFMLEDPFNQGFMPSKADYLIDDEN
                     IIPIGGLDFKFHFLPGHTPGCTMIEIVGKNIMFSGDFLFYRNIGRWDFPYSDANLMKQ
                     SLEKVMTYKEDFKLLPGHGQETTLKEEQVHLPSWLRYF"
     gene            16327..17067
                     /locus_tag="ACJFD7_000749"
     CDS             16327..17067
                     /locus_tag="ACJFD7_000749"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008795 - NAD+ synthase activity [Evidence
                     IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HGG0859587.1"
                     /translation="MDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCK
                     RALKENVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLV
                     SLGNFAARIRMSLLYDYSALKNSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKS
                     EIYALAKYLNLHENFIKKAPSADLWENQSDEADLGFSYAKIDEGLKALETNDEKLLRT
                     LDPSLIAMLKNRMQKNAFKGKMPEILEI"
     gene            17071..17997
                     /locus_tag="ACJFD7_000750"
     CDS             17071..17997
                     /locus_tag="ACJFD7_000750"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009029 - tetraacyldisaccharide 4'-kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HGG0859588.1"
                     /translation="MNEEKNYELWLDNYFFKPNFWQKCLAFILLPLSVLYAFFAILNT
                     FFRKKIVFKKPVISVGNLSFGGNGKTPLCKAIAREFDGVFIVLRGYKRKSKGLFVVKN
                     QNEILCTLAQSGDEAMEYAFEENIKGVIVSEDRVKGIEKAFELGAKIVVLDDAFSKFH
                     IKKFDILLESKIKPYFDFTLPSGAYRLPKFYEKRADFIALEGRDFVRYSFVKENPKAV
                     LATAIAKPFRLYEHFIKARACYFFKDHYEFKKEELENLLKKHNCDTLMLTFKDFVKVK
                     DFGFKCQIIELNIELKDSLREKIKTYIKEFEQ"
     gene            17994..19406
                     /gene="thrC"
                     /locus_tag="ACJFD7_000751"
     CDS             17994..19406
                     /gene="thrC"
                     /locus_tag="ACJFD7_000751"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HGG0859589.1"
                     /translation="MKLVESRNVNNVSSFKEALINPNAPEGGLYSPLNLPIFEGEKYA
                     NLSYKDFALKLIESFGFGEEELFKKALKSYESFDDKNTPISLQKISEKTYINELWHGP
                     TRAFKDMALQPFGVLLSEFSKDKNILIICATSGDTGPATLKSFENAKNVKVACMYPKG
                     GTSGVQELQMRALDKDNLKVFAIDEDFDAAQRTLKELLFSKDFQNEIRALNYELCAAN
                     SVNFGRILFQIIYHYYASLKLFNEFLEEVQIIVPSGNFGNALGAFYAKKMGAKISKIK
                     IASNVNNILSEFFNHGVYDLREKSLKKTISPAMDILISSNIERLLFAKFKDKRTKELM
                     NLLKNERYFKLEKEELQSLQEDFEADFCTDEECMQFIKQSKILIDPHTATCFKMLDPL
                     KPSIITSTAEWTKFTPSMIKALYDRDSKNEKEDLKFIAKEFNVQVKDEILALFDLKNS
                     DEKVFEAKSIKKEILDWMQK"
     gene            19403..20122
                     /gene="kdsB"
                     /locus_tag="ACJFD7_000752"
     CDS             19403..20122
                     /gene="kdsB"
                     /locus_tag="ACJFD7_000752"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008690 - 3-deoxy-manno-octulosonate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HGG0859590.1"
                     /translation="MIIIPARLKSSRFHEKILCDVGGVPMFVATARRVSSVDEVCIAL
                     DDEKVLSIAKEYGLNAVLTSKNHESGTDRINEACKKLSLKDDEIIINVQADEPFIECE
                     NLLKFKEFASSCLDKKAFMASCYKKITQEEAMDPNLVKVLCDKEGYALYFSRAKIPYE
                     RENYEESFKGHLGIYAYSVKALREFCSLLSSALERAEKLEQLRAIENGKKIKMLEIST
                     TSMGIDTKEDYERALRIYLGK"
BASE COUNT         6906 a         2594 c         3421 g         7203 t
ORIGIN      
        1 tatgctataa atggaataaa atcgatggat tttaatgatc caggcaatag aatgaatatc
       61 actcacctaa gagatttttc aaattcttct attgcaaata tttatcaaac ccctgaacaa
      121 atgaaagaag ctgaaagttt atatatacaa tcaggatctt taatagatgg cataaatgga
      181 catagttttg gtttatcttt ggaagaaatc aaaaatgttt ctaaaggtga agattggcaa
      241 tttaatcctg atatgtcagt ttatccacaa aatgaagatg gaagctattc taaagaagct
      301 ttatttatga gttttttaaa atcatatggt agcggacaac ctgttgagag tccaaaaacc
      361 acacttaatc caaaagtaga agcttacaat agggctatgg ctaaagaaag ttttaatggt
      421 gatagcattg ctttaaatga cattatgaca ggcaaagttg attttgcaag tttgttaaaa
      481 ggttatgcac aagatggctg gcttgatgca gatatatatg caatggaaaa aggagttgct
      541 tggcaaaata caagcatagg ttatggtgga gctttgtttg ataatcagtt taatcaagca
      601 aaagctaatg gttggaaagc aagcagtgaa agtatcaatt cttatgttgg atctataatg
      661 gatagactta ataatcttat agggcagact agggtttagg aagtatttgc acgaagtcaa
      721 attaaaaatg atgacatttg caaatactta tgcaaatcac ataaagctag gtgcatcgtt
      781 tgaaaagagt atcaaatctc catgttttgt ttctttagct agagtttgaa ctagctgact
      841 cttttcttta agtataatgg tttttatttt taactctttt ttgaaaattt cagcattgat
      901 ttgtgcacta atgatagcaa gatcaaaaca ctcattgatg attttagcaa gttttatatt
      961 ttcttcttcg cttacttcta ctataccagg acttactaaa actttgcgtc ctttatagct
     1021 tttacaaagt ttatagcttg tgctcatacc tttaaaattt ccattaaaac catcatctat
     1081 gataaattta ggctctcttg aaagcacttg caagcgatgt tctacggaat ttatatttaa
     1141 aacttgcttt tgaatttttt ctagttttat gccaagataa tgagcacaaa gtatacaaac
     1201 acaaagattt tgcgcattaa aatcccctaa aatttgactt ttaaaatcat aggatttatt
     1261 ttctatatcg actttaaatt ctaaaccttc aagacttgaa tgaataagac ttaatttatc
     1321 atcataaagg ctgatgagtt tatcttcttc tttttgggtg ctagagtgta aaaaagcctt
     1381 ttctagtctt ttggaattta aggcttcaag tttggttgag cggatatttt caacactttt
     1441 aaaatactct aaatgtgcat tgcctatctc tcctactatg ctgatttgag gttgtaaaaa
     1501 atgcgtgatt tcatcgatat cgcctttaag tctagcgcct gcttcagcta tgtaaatttg
     1561 agtatcttga cttaaattgg tattgatatc agcaactata cctagcaagg tattgacaga
     1621 gcgtggtgtt ttgtagcttt taaagtcatc ttttaaaagt tcgtatagaa aatttttaat
     1681 acttgttttt ccaaaacttg cggtaatgag tatgattttt aaattttcgt tggctcttag
     1741 tttggctttg gcttgttttt tataatataa atttgtaaaa aactcataaa ttttaagact
     1801 caataaagca aaaggaaggc taaaaagatt aaaaagaaaa gaaaaacgca aagcaaggat
     1861 agcaaaaata gcattataaa caaaaacaaa aacaaaaaac catttaacct tacttgtaaa
     1921 aacaagcttt ttatctatgc ctttattcca aaaatacaaa atcagagtat ggatcaatgc
     1981 aaaatatgcc aaagagtata aaggaaaagc taagaataaa aaataaggaa taaataaaaa
     2041 atacaaatgc cacaaaggtt tatgataatg aaaaaacacg cgtttaaatt tataagaata
     2101 ccattgtaaa gtactcataa gataaaaagc tatacaaaaa ttaaaaaata aagaattgat
     2161 aaaataaaga gtattgataa gcatttaaat ttccttgatt ttttgagcta tgaaagcaga
     2221 atgttttaaa aagaaaaaat gatccccctc taaaggataa aaagtactat tttttaaaaa
     2281 ttgatgcatt ttctcaccac aatacaaagg cgtagcttca tcgctttttc cccaaaaaat
     2341 caagctttta gccttttgct tggcaaaaat ttcactaaaa tcttcatcaa caaccttttt
     2401 aaaggtttca tacatcatag gactaagact tgctccatct ttactagcaa aatagcgata
     2461 aaattttcca aaaccaaaga gttttaaaat tttaaaaata cggattttaa aacgcacttt
     2521 tggggatttt ttagccaaaa ttcccgcact tgaaagtaag attagagtgt ctttttcttt
     2581 tgcgagtagg gtgcttactt ttccaccaaa agaatgcccc atgaaaaaac agacattgag
     2641 ttttttttgt tttaaaaaaa gttctgtgat attggcataa tcttgagtgt ttaaaatttc
     2701 ttccacactt gaatttccaa aacccgccaa atccatataa atttgacaaa aatcttttaa
     2761 aaaaggacaa aaactttgct tcataagttc tttattggct ccccagccgt gtaagataag
     2821 tatttgcggt aaggaaagat cacctaaaat ttcataagaa atttgataag ttttgttttt
     2881 ataagaaagt tgagtttgag ccattttaag ccttttgatt tttgtagata ttttctaaaa
     2941 gttgcatggc gttttgtaag cgttcaaatt ccttcatact aagtattaca gcttcaaatt
     3001 tgttattttt taaaataact atttttccac tttcgctttt tttgagtttt tccataatgg
     3061 ggctaaaatt tcttaccact tcggtggcag tgtaaatttc atcttgttta aaagagagca
     3121 tttttcttcc taaaatacgc taaattttat gtataattta gcgtattttg acttaaaagc
     3181 ttataatttt cctttttgtc cgttgataga gtgaaggaag ttgtagctga tttttatcat
     3241 tttttcaagt gaaatttgat cagctaaagc gtttaaagta gtactaaaat ctttaaaaag
     3301 ataattagcc aaagaaccag gatttgggtt gatttcattt aaatatattt cattatccag
     3361 tataaaaaaa tcgcagcgta ttaaagcacc tttaaacaaa ggattgtaga tctttttaaa
     3421 actatctttg agtttttctt ttaattcttc gcttaaattt gcttctataa gctcattgtg
     3481 tcctgaaaag ctaagatatt tttgttcaaa gtctaaaaat tcttttttct ttggctcttc
     3541 tatgatggaa aaaacaaact catcattgat catacatcct gcaagattgt attctttgat
     3601 attgttttta aattcttcca ctacaagatc attatcaaat tcaaaaccta catctttggc
     3661 gtattctaaa tctttttcat ctttcactat actaatacct atgctacttc caagtcttgc
     3721 aggtttgata atgcaaggaa aactaagctt ttctttagag ttttgatttt ttcttagcat
     3781 ggtataatca agtgttttta ctccaacgct ttttgcataa agtttagtaa gttccttgtt
     3841 aaaagataat acgctggctt caagcctagg tcctataaat ttaatagaat aaaactcaaa
     3901 taaagccgca atttttccat cttctccatc tctaccatgg ataagattga tcacgcactc
     3961 gcactctagt ttattttctt ttaaaaagcc tttgctaaaa aaacctcctt gtttgatgaa
     4021 aagttctttt tcttttttat aagctttggt gctaaaagtt ttagaattca ttttttcact
     4081 tgggatatga taaaatcttc tttcttcatc acaaaaaata aattctaaat tttgattaat
     4141 aactttttta agtactacag cacttactat actgatctca tgttcataag aatttccgcc
     4201 aaaaagtatt gcaaatttca ttttattcct ttatcctagt tttttaagag cttctttgat
     4261 gagttcgctt gtgcctgttg cttgagcact tgctaaaaca cttatgattt tttcttgttt
     4321 aaagcctaga gtaagaagtg cggctaaggc ttcactttta tcatcgctta cattttcaag
     4381 tttggttttt gtatctgaaa gttctactat aatgcgtttc gcactttttg gacctatacc
     4441 aggtactttt ttaagcatgc tttcatcgcc taaacttaac gctttgtaaa aagaatttac
     4501 atcaagacta gagcataccg ccatagcagt atttgcaccc actccattga cttttaaaag
     4561 catttcaaat attttttgtt catctttatc caagaagcca taaaatttat tagaatcttc
     4621 tttgatgatt tgagtaataa aaaactcatg cttttcttga gtttgaattt tagcagaaca
     4681 aaaaagcgaa ataaatatcc catagcttaa accactagca catttaacaa tgataaaagc
     4741 aggttctttt tttgtgatta ttccttcgat gccgacaacc atgctatatc cttttcttca
     4801 taatctaatt ttttatgtat ttctatactt tcttggttgt tttgtatgac ttttttaata
     4861 cctataaatt tagcactttc attaacaaat gaagagtaaa aaatatcttc tttaggttct
     4921 agaagtgaaa atttgatctc attcatgtca gtccatttgc cgcttttatt tataaaagtt
     4981 gcttcaaaaa gcattttttg caaattgatt aattctaatt gtaaagattt tttgcgttca
     5041 agaagttctt tttcttcatt ttgtagttta tttaattcaa gattttgtaa agagaaatct
     5101 tttagggctt tttcgtattg tataggaaca ttttgacctt gatttttaag ttctgttatc
     5161 tttttttcaa cgcttaaaat tccattttta cttgataaaa tgtattgtct tattttattc
     5221 attttatgat ttaacttaga aatttgctct cctaaaatcg caaattcttc atcataatta
     5281 ctatcaagag ttttaatttt agcatgaaat ttattgttat ccccgttaat gcgttctatt
     5341 gtggtgtttt caaaaaacac acaagaatta ttactttcta aattttctat atagatttta
     5401 tcagcttgta tatttccgcc taaacttttt ttaattctca cttctttagc tttgattgtt
     5461 ccaccttcga gcaaatctat atttaaaatt tcggcttcta caaatcctct atgagttttt
     5521 atataggctt gtttggcttg aattttggct ttagagtgtg tagtgccttc aattttcatt
     5581 ttagtggcat taagttgagt gttgcttcct acgcttccga ctacatttaa ttcttcacat
     5641 tctatcccaa caccagaatt tacagcatct tttacttctg aaagaaattt tatattgatt
     5701 ttgacatttt tgtctagtcc agctcttata atccctatat ttttaaaatc taccccatta
     5761 aaatctagtt cattggcaat atcaaatttt tcaccatctt gtactacata accttttttt
     5821 aaagctatat attctgtgta tccatcttgc tctacttgtt taaaagccga agaacaagaa
     5881 aatttaactt tattttcatt tgcggctaaa acttttaagg tgtgtaaatt taagtctttt
     5941 ccttctttac cttgtttaaa tttggcgtgt tttaaaacaa cttcattttc atcaacaaca
     6001 ataatacctg agcgtttttc atcgatagtg tagtttttgg ttttttcttt ataagtcaat
     6061 atcagagatt catcttgact ttctatagga tcaatacctt gtgcaacggt gatttgtata
     6121 gttttattta aaggggtgtt tttatgttga ttgcaaaaag acattaaatt tttcttaaaa
     6181 tcaaaaatgc ggatacctat taaaaattta agtttcaaca tctttttata aatattttgc
     6241 aaaagttcta gtgctagttt ttcatgaaag tctaaatttg taaaatcaat ttgagcaact
     6301 attttggtta aatttttatt tgcaactagt ttgaccgctt gagatgcttt gctttggttt
     6361 ataccgtgga aaatttctat tttgtattct tgcttgattt gaagatcatt ttttaaaaaa
     6421 atttcatctt tatcaaaaag agttaattct ttttcagaga ttttttccca ttctaaatct
     6481 ccaaaacgat attgtgtaga aaatgccaat aaactaaaat caagctcatt taagctaagg
     6541 tttgttcgtg aagctacgct taaaagctct cgagctggat tttctgtata ggcaataatt
     6601 ttttcatcca aagccaaaac tttccccttg taaaaaatta agaatgtaat tatagtcaat
     6661 ttttaatcaa ttttagttaa aatagttctc tttatatttt gaaatttatg aaaaaattta
     6721 atgaagagtt tagtatttaa aaattttatt atcaatgctt taggaatttt attttcaaga
     6781 attttagggc ttgctagaga tgttttaata gcgctttttt taggagcagg gctttatagt
     6841 gatatttttt ttgtggcttt aaaaatgcct gcttttttta gaagaatttt tgcagaaggg
     6901 gcttttggac aaagtttttt gcctaatttt gtaaaagcga aaaaaaaagg agctttttgc
     6961 gttagtgtaa tgatgcaatt tagccttata gtttttttat tttgtctttt ggtaagtttt
     7021 ttttcctctt tttttactaa gctttttgct tttgggttta acgcagatac tatagcttta
     7081 gcggctcctt tggtggcgat taatttttgg tatttgtttt ttattttttt agttactttt
     7141 ttaggagcta ttttaaatta tagacaaaaa tttttcatta cctctttttc tgcggcatta
     7201 tttaacttaa gtattgttat agctgccttt tttgtggata aaaatgcacc gcaaaataca
     7261 ctttattatt tttcttatgc aacggtttta agtggggtag cacagcttat tttacatttg
     7321 cttgttttaa aaaacaatcc tgtaatccgt gctatggctt taagtataaa atttaaaaaa
     7381 gccaaggcga aattacaagg tttttatggc aatttttttc atggagtttt aggttcttct
     7441 gcgactcaat ttagctcatt gcttgataca accatagcta gttttttaat gagcgggagt
     7501 atttcttatc tttattatgc aaatcgtgta ttccaactcc cccttgcact ttttgctatc
     7561 gctttaactc aagtttcttt tccaaaaatt ttaaaacatt taaaaagtgg tcaagaaaat
     7621 ttagccttaa aatttatgca aagagcatta gcgcttttaa gcattttgct tattgcttct
     7681 agtattgtag gttctgtgtt tgctttggaa atttcaaaac ttttatttga aagaggaaat
     7741 ttcactcacg aagatagtgt aattacggct tatgttttga ttgcttatct tatagggctt
     7801 ttaccttttg gtttgcaaaa gcttttttct ttgtggcttt atgcaaaatt taaacaaaaa
     7861 acagcagctt ggatcgcggt aaaatcttta attatcagtg ctttatgttc tatggctttt
     7921 atatttttga ttaaagatga aagtttaaag gttattgcag tagcactttc aagctctatt
     7981 agtgcttttt atttgcttgg agctaatatc aaagaatttg gttttaagaa attttttgct
     8041 ttaatatcta ttaaaatttg cttattggtt atagttgctt tgattgtttt tacgatcttg
     8101 cttattttga ttaaacctta tattttaagt ttttttatag gaatttttac aagttttaaa
     8161 ggagtttttt aatgagatta ttagatagtg taacaaaaga gaaaataaaa cttgataaaa
     8221 aagatattag tatttattta tgcggaccta cggtttatga tgatgcacat ttaggacatg
     8281 caagaagtag tgtttgtttt gatcttttgc gtagggtttt acttgctcaa ggcaataggg
     8341 taaaatttgc tagaaattat acagatattg atgataagat tttgaaaaaa atggctcaaa
     8401 gtggtcaaac tttagaggaa attacggaat tttatatcaa aagttatgaa gaggatatga
     8461 gggttttaaa tgtattagat cctgatttta aacctcgtgc aacgcattat ataacagcta
     8521 tgcttgattt gattaaaaag cttgctaagg atgggtttgt ttatactcta gaagatggaa
     8581 tttattttga tacaagtaaa gatgaaaaat atttaagcct atcaaatcgc aatttagaag
     8641 aaaatatctc tcgtctaagt aatgaagtgc aaaaaagaaa tgaaagcgat tttgtgcttt
     8701 ggaaatttga tgaaaatttt tacgaaagtg aatttggcaa agggcgtcca ggttggcata
     8761 ctgaatgtgt tgctatgatt gattctattt ttgaaaatac tcttgatata catgctggag
     8821 ggatagattt gctttttcct catcatgaaa atgaagctgc gcaatgtcgt tgtggatgta
     8881 agagaaaatt agcaaatatt tggcttcata atggttttgt aaaaatcgat ggcgaaaaaa
     8941 tgagtaaaag tttaaataat agttttttca taaaagatgc tttaaaagaa tttatgggcg
     9001 aagctttaag attttatctt ttgagttctc attatagatc tcattttaat tattctttat
     9061 tggatttaga aaatgctaaa aaacgtttag ataaatttta tcgccttaaa aaaagattgg
     9121 atttaggtga aatttctgat tttgatgttt taaatgatat tgaaataaaa agcgaaattg
     9181 ctaagcaaat tttagagatt ttaaatgatg atttaaacgt ttctaaagcc ttagctcttt
     9241 tagatgattt tataaataat gcaaatttag agttggataa agaaagcaaa aataaaattt
     9301 taaaacaaaa tatcaaagaa gctttaagtg agctagctaa aatttttggc tttggtttta
     9361 tggatacaac tttatatttt caatggggtg taagcaaaga agaacgagaa gagattgaaa
     9421 agttaatttt agaaagaact gaggctaaga aaagcaaaga ttttaacaca gctgatacaa
     9481 taagggaaca actaagtagt aaaaaaatca ctcttttaga tactccaaat ggaacaattt
     9541 gggagaaaat aaatgcataa tgagatgaat ttaaaagagg ttttaatacg ctttaagccc
     9601 ttttataaaa gatattggaa gcaatttgct atagctattt ttggtatgat tttagcaagc
     9661 ggaggaactg ctggaagttt ttatgcttta gagcctattt taaattatat tttcgttgaa
     9721 aaaaatgaag ctttacttta tacagtacct tttttgctag tattgatgta tttttttaaa
     9781 aatcttggaa cttatttaca aagtttttat gtttccttta taggaacaga tatgttaaga
     9841 gtattgcgtg ctagggtttt aaaaaatgtt ttacgcttgg atatggattt ttttaaacgc
     9901 tatagaagcg gagagcttgt aagtcgttgt actaatgata ttaatgcact tcaaagcata
     9961 gtatcaaaca ttattcctga tttttttaga gagcttttaa ctgctatagg actgcttgcg
    10021 gtagtcttgt atcaaagtcc tactttggct ttttttgctt tagtgatttt gcctttagct
    10081 atttttcctt tggtatggtt tgctaaaaaa cttaaaaaat atgcaagaaa tatacaagaa
    10141 acaaattcgg atttactttc ttatttgggt gaaatttttt caaatattga attgatcaaa
    10201 gctaatgata atgaaaaaaa agaaagtgat aaatttgcta agcataatga tactttatgt
    10261 aaattaaacc taaaatccgc acgtattgat gcacttacaa gtcctttaat ggatatgatg
    10321 ggttctgttg gggttgctgt ggtgattatt gtagggggta gagaggttat caatggttct
    10381 atgagtgtgg gaagttttat cagttttgtt tcggcacttt ttgcgatata tactccttta
    10441 aagcgtcttt cgtctttata tggaaaactt caaggtgctg ttgcggcaag tgaaagaact
    10501 ttttatttat tggatttaga acctcaaatt aaaggtggaa gcaaagaatt aaaaaacatt
    10561 gaaaaaatta gctttgaaaa tgttgaattt gcttatgaaa acccgcataa aagtgtttta
    10621 aaaggcgtaa attttgattt tgttaaaggg caaatgcttg ctcttgtagg gacaagtggg
    10681 ggtggcaaat cttctattat taatcttttg atgtattttt atgaaaagca aaaaggtaaa
    10741 attttactca atcaagaaga tattggcact tttaccatag aaagcttaca tgctaaaata
    10801 ggacttgtaa cgcaaaatat ttatcttttt aatgatagtt ttgctgcaaa tattgcttat
    10861 agcgaagagt tagaagaaga aaaagtcatc caagctttaa aattggccaa tgcctatgaa
    10921 tttgttaaag aaatgggcgg gatttgggct gaagtgaaag aacatggtaa aaacttaagt
    10981 ggaggacaaa aacaaagaat agcaatcgct agagctttat ataaaaatcc tgatgtgctt
    11041 atttttgatg aagcaacttc agctttggat aatgaaagtg aaaaagcaat agttaaaact
    11101 atagaaaatt taaaacaaga tagattgatt ttagtggttg cacatcgttt aagcactata
    11161 gaaaatgcag ataaaatagt agtattggat aagggcaagg tattagcaat aggtaaagat
    11221 gaagagcttt tgcaaacttg ttctttgtat caaaaattta aaagcaaaga aaaaacaaag
    11281 cctagcttta gttaatttta gttagaattt caaaaaggat taaaaatggc ttatgaaatg
    11341 ataaaacctt tactttttaa gttaaaccct gagcatgcac atgctttggt tgaatatagc
    11401 ttaagggctt taagtgctag ttttccaggg gctttaagtt ttttagcgta taaatatata
    11461 gttgatgatg agagtttaag gcaaaattta cttggacttg attttaataa ccctgtgggt
    11521 ttagcaggag gctttgataa aaatgctact atgataagac ctttgagtgc tttaggattt
    11581 ggctttttag aagtgggaac ttttactcca aaacctcaag aaggcaatga aaagccacgc
    11641 ctatttagac ttgtaaaaca agaaagtata caaaatgcta tgggttttaa caacgaaggt
    11701 gctgaaaaga ttgctttaag acttgcaaaa acttatcctt ttgttttacc cttaggagta
    11761 aatataggga aaaataaaat cactccaaat gataaagcct tggaggattg ttttactttg
    11821 tttagagatt ttaaggattt atgtgattat tttatcgtta atatctcatc tcccaatact
    11881 aaaaatttaa gagagttaca aaatgatgat tttttaaata ccttgcttga agaagccaaa
    11941 aaaattactt ctaaacctat tttgataaaa attgctcctg atatgaaaat agatgatgct
    12001 ttaaatttat gtgaaaatgc tattaaaaaa ggtgcagatg ggtttatatt agccaatact
    12061 agtgttgatt atagcttact agataataat cgtacttttg gtggtattag tggaaggttg
    12121 attacagaaa aaagtggtat ttttttcaaa gaagtagcta aaattctttt tggcaaaacc
    12181 ttgcttattg caagtggagg gattgatagt gctgatattg cttatgagcg tattaaaaat
    12241 ggggctaatt tggtgcaagt ttatacagct ttgattttta aaggtccttc tttggtaaaa
    12301 aatatcaatc aaaatcttat agagctttta agaaaagatg gttttttaca cattagcgaa
    12361 gctgttgggg taaatttaaa atgattgctt atgaaaaaat tcaattaaaa aacaagcttg
    12421 aagtttatgc tttgcctgta aataaaaata gcgatgtgat tagcgttgat attttttata
    12481 aagtgggttc aagaaatgag atcatgggaa aaagcggcat agctcatatg ctagaacatt
    12541 taaattttaa aagtactaaa aatttaaaag ctggcgaatt tgatgagatt gttaagggtt
    12601 ttggtggtgt ggataatgca agcacaggtt ttgactatac tcattattat attaaatgtg
    12661 cgaagaaaaa tttagataaa gctttggaac tttttgcaga acttatggag aatttaaatt
    12721 taaaagatga agaatttcag cctgaaagag cagtggtttt agaagagcgt agatggagaa
    12781 cagataataa tcctttggga tatctttatt ttaggctttt taatcacgca tttatgtatc
    12841 atccttatca ttggactcct ataggttttt ttaaagatat agaaaattgg agtattgaag
    12901 atattaaaga atttcatagt atttattatc aacctaaaaa tgcgatttta cttgtaagtg
    12961 gcgatataga aagtaaagaa gtttttgagc tttcaaaaaa acattttgaa aagattaaaa
    13021 atactaagac tatacctaaa attcacacaa aagagcctaa gcaagatgga gcaaaaagaa
    13081 tatatttgca taaaaactca gatactgaac tattagccct tgcttataaa attccaaatt
    13141 tcaagcacaa agatatacct gctttaaatg ctttatccga gcttttagga agtgggaaaa
    13201 gttctttaat gagtgaaatt ttgattgata aattaaattt aatcaatgat tattatgctt
    13261 atgttaatga ttgtatagat gacaatttat ttatttttat ttgtaattgt aatcccaatg
    13321 ttaatgcaga aaaagtagaa aaagaacttt taaaaatcat tgataaactt aaaatgggta
    13381 aaatttctca aaaagatttg caaagagtga aaaataatgt caaaagtgat tttattttct
    13441 cacttaacaa tgctagtgca gtggcaaata tttatggttc atatctagca agaggagata
    13501 tcaatccttt gttaaattat gagaaagata tacaaaattt ggaattaaaa gatttgattt
    13561 cttgtgctaa aaagtatttt attcaagaaa attcaactac ggtaattcta agaaaggatt
    13621 caaatggata aaaatattat cattggggcg atgacggctc ttattacacc atttaaaaat
    13681 ggaaaagttg atgagcaaag ttatgcaaga ttgattaaaa gacaaataga aaatggcatc
    13741 gatgcagtag ttccagtagg aacaacagga gaaagtgcaa ctttaaccca tgaagaacat
    13801 agaacttgca tagaaatagc cgttgagact tgtaaaggaa ctaaagttaa ggttttagca
    13861 ggtgcgggaa gtaatgcaac tcatgaggca gtgggtttgg ctaaatttgc taaagagcat
    13921 ggtgctgatg ggattttaag tgtggcaccg tattataata aacctacgca acaaggactt
    13981 tacgagcatt ataaggctat tgcgcaaagt gtagatattc ctgtgctttt atataatgtt
    14041 ccaggaagaa caggttgtga aatttcaacg gatactatta tcaagctttt tagagattgt
    14101 gaaaatattt atggagtaaa agaagcgagt ggaaatatcg ataagtgtgt ggatttgctt
    14161 gcacacgaac ctagaatgat gcttatttca ggggaagatg cgatcaatta tcctatactt
    14221 tcaaatggtg gaaagggagt gatttcagta acttcaaatt tattacccga tatgattagc
    14281 gctttaactc attttgcttt agatgaaaat tataaagaag ctaaaaaaat caatgatgag
    14341 ctttataata tcaataaaat tttattttgc gaaagtaatc ctattcctat taaaacggct
    14401 atgtatttag ctggattgat agaaagtttg gaatttagac ttcctctttg ttctccaaat
    14461 aaggaaaatt ttgctaaaat tgaagaagtg atgaaaaaat ataagatcaa aggattttaa
    14521 tgaatacaga atttcaagga aaaactttag tgattagcgg tggaactcgc gggataggca
    14581 aagctatagt ttatgaattt gctaaagtgg gtgcaaatat agcttttact tataattcta
    14641 atgcgcaaat tgctgatgaa atggttcaag atttggagaa aaattataaa atcaaagcta
    14701 gagcttatga atttaatatc ttagaacctg aaacctataa agaacttttt gaaaaaattg
    14761 atgtggattt tgatagagtg gattatttta tctcaaatgc tatcatttca ggacgtgcgg
    14821 ttgtaggtgg ctatactaaa tttatgaagt taaaaccaaa gggaattaat aacattttta
    14881 cagccacagt aaatgctttt gttgtgggcg cacaagaagc agctaaaagg atggaaaaag
    14941 tagggggcgg aagcattatt tctatctcat ctacaggaaa tttagtgtat atagaaaatt
    15001 attcaggtca tggtacagca aaagccgctg tagaagctat ggcaagatat gcggctactg
    15061 aacttggaga aaaaaatatc cgtgtaaatg tcgtaagtgg tgggcctatt gaaactgatg
    15121 ctttaagagc ttttacaaat tatgaagaag taaaacaggc tactataaat ttaagccctt
    15181 taaatcgcat ggggcagcct gaagatttgg ctggagcatg tctttttctt tgttcaagta
    15241 aggcaagttg ggtgacagga catactttca tcgttgatgg tggtacaact tttaaataaa
    15301 aattaagaaa aatcaatgga tttttcttaa aaatgttttt caatcaagtt ttaatttcca
    15361 ccctaaaaaa acacttaata atgcaagtaa aaaaataaaa tttaaagtcc aattaccaaa
    15421 acctataaaa cctatagata atacgctgta aaaaaatcct cctacagctg aataaataca
    15481 aatcgtactt aaagatccat tttctgccat ttttttacat gggcagattt tataaaattt
    15541 tttatcatta aattgatttt tctttttatt tcccaaaaat aaaccaaaaa gggcaaaaag
    15601 atttaaaaaa ataaaagtat ataataaaat ttgatctaat tccattttaa tataccttaa
    15661 aaatatctaa gccaagaggg tagatggact tgctcttctt ttaaagtagt ttcttgtcca
    15721 tgtcctggca aaagtttaaa atcttctttg taagtcataa ctttttctaa gctttgtttc
    15781 attaaatttg catctgaata aggaaaatcc catcttccta tgtttctata aaataaaaaa
    15841 tctccactaa acatgatatt tttacctaca atttctatca tagtacaacc tggtgtatgt
    15901 cctggtaaaa agtgaaattt aaagtcaagt ccgcctatag gaatgatatt ttcatcatca
    15961 atcaaataat ccgctttgct aggcataaaa ccttgattaa aaggatcttc aagcataaaa
    16021 gtatcatttt tatgaatata aatggggatt tgataggctt gttttacttt ttcattatcc
    16081 caaacatgat cgtaatgtcc gtgagtgttt aaaatcgcta aaggattttt tacatgtttt
    16141 ttgatgaaat ttagcgcatc aaaaccagga tcaattataa tttctccatg ctcaccaaat
    16201 aaaatataac aatttgtctc ataagctcca caagcttgtt tgataatttg cattttttgc
    16261 ctctttaata aaaaatttgc cttaaataaa tataattata cattaaattt ttaaaaggca
    16321 agctttatgg attggcaaaa gattacggaa aaaatgtgtg attttataca agaaaaagtg
    16381 aaaaattctc aaagtcaagg tgtggttttg gggcttagtg gcgggattga ttctgctttg
    16441 gtagcaacgc tttgtaaaag agctttaaaa gagaatgttt ttgctctttt aatgccaact
    16501 caaatttcaa acaaagccaa tcttgaagat gctttaaggc tttgtgcgga tttaaatctt
    16561 gaatataaaa tcatagaaat tcaaagcatt ttagatgctt ttataaagca aagtgaaaat
    16621 accactctag tatctttggg aaattttgca gcgcgtatta gaatgagttt gctttatgat
    16681 tattctgctt tgaaaaattc tttagtcata ggcacttcta ataaaagcga attgctttta
    16741 ggttatggta cgatttatgg ggatttagct tgtgctttta atcctatagg atcgctttat
    16801 aaaagtgaaa tttatgcctt agcaaaatac cttaacttgc atgaaaattt catcaaaaaa
    16861 gctccaagtg cggatctttg ggaaaatcaa agtgatgagg cggatttagg tttttcttat
    16921 gcaaaaatcg atgaaggttt aaaagcttta gaaactaatg atgaaaaact tttaagaacg
    16981 cttgatcctt ctttgattgc tatgttaaaa aatcgcatgc aaaaaaatgc ttttaaggga
    17041 aaaatgcctg aaattttgga aatttaaaca atgaatgaag aaaaaaatta tgaactttgg
    17101 cttgataatt atttttttaa gcccaatttt tggcaaaaat gccttgcttt tatactttta
    17161 cctttaagtg tgctttatgc tttttttgcg attttaaata ctttttttcg taaaaaaata
    17221 gtttttaaaa agcctgttat tagcgttggt aatttaagtt ttggaggtaa tggaaaaacc
    17281 ccgctttgta aagctatagc aagggaattt gatggcgttt ttatagtgct taggggctat
    17341 aaaagaaagt ctaaaggttt gtttgttgtt aaaaatcaaa atgaaatttt atgcacctta
    17401 gcacaaagtg gcgatgaagc tatggagtat gcttttgaag aaaatatcaa aggtgtgatt
    17461 gtgagtgaag atagagtaaa aggtattgaa aaagcctttg aattgggagc taaaatcgtt
    17521 gtactcgatg atgctttttc taaatttcat attaaaaaat ttgatatttt gcttgaaagc
    17581 aaaatcaaac cttattttga ttttacttta ccaagtggag cttatcgttt gccaaaattt
    17641 tatgaaaaaa gggctgattt tattgcatta gaaggcaggg attttgtgcg ttattctttt
    17701 gtaaaagaaa atccaaaggc tgttttggca actgctattg ctaaaccttt tagattgtat
    17761 gagcatttta tcaaagcaag ggcttgttat ttttttaaag atcattatga gtttaaaaaa
    17821 gaagaattag aaaatttgct aaaaaaacat aattgcgata cactaatgct tacttttaag
    17881 gattttgtta aagttaaaga ttttggtttt aaatgtcaaa ttatagaatt aaatatagaa
    17941 ttaaaagatt cattaaggga aaaaataaaa acttatatca aggagtttga gcaatgaaat
    18001 tagtcgagag tagaaatgta aataatgtat caagttttaa ggaagctttg attaacccaa
    18061 acgccccaga aggagggctt tactcgcctt taaatttgcc tatttttgaa ggagaaaaat
    18121 atgccaattt gtcttataaa gattttgctt taaagcttat agaaagtttt ggttttggcg
    18181 aagaagagct ttttaaaaag gctttgaaaa gttacgaaag ctttgatgat aaaaatacac
    18241 ctatttcttt gcaaaaaatc tctgaaaaaa cctatattaa cgagctttgg catgggccta
    18301 caagagcttt taaagatatg gctttacagc cttttggcgt gcttttaagc gaattttcaa
    18361 aggataaaaa tattttaatt atttgtgcta cgagcggcga tacaggacct gcaaccctaa
    18421 aaagctttga aaatgcaaaa aatgttaaag tagcttgtat gtatccaaaa ggtggcacaa
    18481 gtggagttca agagttgcaa atgcgagctt tagataagga taatttgaaa gtttttgcta
    18541 tagatgagga ttttgacgca gcgcaacgca ctttaaaaga attgcttttt tcaaaagatt
    18601 ttcaaaacga aattagagct ttaaattatg agctttgcgc agcgaattct gtaaattttg
    18661 ggcgtatttt atttcagatt atttatcatt attatgcgag tttaaaactt tttaatgagt
    18721 ttttagaaga agtacaaatc attgttccaa gtggaaattt tggcaatgct ttaggagctt
    18781 tttatgctaa aaaaatggga gctaaaattt caaaaatcaa aatcgcttca aatgtgaata
    18841 atattttgag tgaatttttt aatcatggcg tttatgattt gcgtgaaaaa agtcttaaga
    18901 agactatttc tccagctatg gatatactta tttcatctaa tatcgaaaga cttttgtttg
    18961 cgaaatttaa agataaaaga accaaagaac tgatgaattt gttgaaaaat gagagatatt
    19021 ttaaacttga aaaagaagaa ttgcaaagtt tacaagaaga ttttgaggcg gatttttgca
    19081 ccgatgaaga atgtatgcaa tttatcaaac aaagcaagat tttaatcgat ccgcacaccg
    19141 caacttgttt taaaatgctt gatcctttaa aacctagcat tattacctct acagcagaat
    19201 ggacaaaatt tactccaagt atgataaaag ctttatacga tagggattct aagaatgaaa
    19261 aagaagattt aaaatttata gctaaagagt ttaatgtcca agttaaagat gaaattttgg
    19321 ctttatttga cttgaaaaat agcgatgaaa aggtatttga agccaaaagt ataaaaaaag
    19381 aaattttaga ttggatgcaa aaatgattat tattcctgca agattaaaat caagtcgttt
    19441 tcatgagaaa attttatgtg atgtaggtgg agtgcctatg tttgtggcta ctgcaagaag
    19501 ggtaagtagt gtggatgaag tttgtatagc tttagatgat gaaaaggttt taagtatcgc
    19561 taaagaatat ggtttaaatg cagttttaac aagcaaaaat catgaaagcg gtacggatag
    19621 gattaatgaa gcttgtaaga aactatcttt aaaagatgat gagattatta tcaatgtcca
    19681 agctgatgag ccttttatag aatgtgaaaa tttattaaaa tttaaagaat ttgcaagttc
    19741 ttgcttggat aaaaaagctt ttatggcgag ttgttataaa aaaatcactc aagaagaagc
    19801 tatggatcct aatttggtta aagtgctttg cgataaagaa ggatatgctt tgtatttttc
    19861 aagagctaaa atcccttatg aaagagaaaa ttacgaggaa agttttaaag ggcatttagg
    19921 catttatgct tatagtgtaa aagctttaag agagttttgt tctttattaa gttctgcact
    19981 tgaaagagcg gaaaaattag agcaattaag agctatagaa aatggtaaaa aaatcaaaat
    20041 gcttgaaatt tcaacaacaa gcatggggat tgataccaaa gaagactatg aaagggcttt
    20101 acgaatttat ttaggaaaat aact
//
LOCUS       DBBXPZ010000026        19707 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.027, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000026 DBBXPZ010000000
VERSION     DBBXPZ010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19707)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19707)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19707
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.027"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..1251)
                     /locus_tag="ACJFD7_000753"
     CDS             complement(<1..1251)
                     /locus_tag="ACJFD7_000753"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HGG0859591.1"
                     /translation="MKLKLNFLPYFPFIPKKLNTNSIIFKIIKVFFIAILLSNSIYLS
                     FFENIFTQTISPFLAIWGLVLLLKSKNSKQYFWIGFFVGILWFWWIGLSSIYFNLNYL
                     VPIIPIIIGFIYGLLFRLCYLLKFDFLRLCGIFCISFIHPLGFDWLNWGIFTVYGFFD
                     PSYRGIICIFLIAYFIYEGYISRYYKIAIVLILFFSGFQYNEKQAQTLNLNYKLINTN
                     ISQNQKFLQENLKSNSDILIQDILQAINEKKELVILPETAFAFDLKNTKYELMLKELS
                     YKITIITGAFHVEKEHTYNSTYIFKKGNVYILNKHFLVPFGEEIPFFKDLTKKYFLKN
                     IEEFSKGPIQSKYKLDNQIITNAICYEATKEQNYQNSQIIIALSNNAWFNNSSEYKLQ
                     QLLMKFYASKYGVSVYHATNGKENI"
     gene            1224..1496
                     /gene="yajC"
                     /locus_tag="ACJFD7_000754"
     CDS             1224..1496
                     /gene="yajC"
                     /locus_tag="ACJFD7_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HGG0859592.1"
                     /translation="MAENSILTSLLPLVVLFAIFYFLVIRPQQKQAKAHKQMLESLQK
                     GDKIITNGGLICEVVKPEEDFIKVKLNEDNVTAKISREFIAKKIDA"
     gene            1489..3069
                     /gene="secD"
                     /locus_tag="ACJFD7_000755"
     CDS             1489..3069
                     /gene="secD"
                     /locus_tag="ACJFD7_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HGG0859593.1"
                     /translation="MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSERGAKINLGLDLQ
                     GGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIA
                     KVENLLKEIKGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAEPT
                     VAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS
                     YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGISDKSNYPVINFTLNAEGSKKFA
                     DYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALL
                     APVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVL
                     VVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYK
                     NAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFM
                     QRIEKNNNTRFWFGYRRR"
     gene            3069..4040
                     /gene="secF"
                     /locus_tag="ACJFD7_000756"
     CDS             3069..4040
                     /gene="secF"
                     /locus_tag="ACJFD7_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HGG0859594.1"
                     /translation="MQFFSEKKIYDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGID
                     FSGGTLVQLKYENAAPITQIREILEKQGTFQNLSVTEFGSNEEVTIRFLGSNDNVSND
                     IGEHISTLLKDTGKFEVRRADVVGPKVGDELRNKGLMAIAVSLIAILIYIALRFEWRF
                     ALAAIISEIHDVVITLGAISLFKIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGNKT
                     SKKTELAPIINESVSATLSRTVLTSGLTLATVVILYFFGGEMIQGFSLALIVGIIAGT
                     LSSIFVASPTLLWFKFSVLEFRNKEIEKAKRKQDKERNRAMYEKGTV"
     gene            4050..6479
                     /gene="leuS"
                     /locus_tag="ACJFD7_000757"
     CDS             4050..6479
                     /gene="leuS"
                     /locus_tag="ACJFD7_000757"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HGG0859595.1"
                     /translation="MAYEASLIEKKWQKIWDENEYFEPKDDLNLPKKYILSMFPYPSG
                     RIHMGHVRNYTIGDALARYYRKIGFNVLHPIGFDSFGMPAENAAIKHKIHPKSWTYEN
                     IAYMKKELFSLGFSFSKKRMLATSDPLYTKFEQEFFIKMFEKGLIYTKEANVNWCEQD
                     QTVLANEQVEDGKCWRCGHEVVQKKMPGYYVKITAYAEELLKDLEKLKDKWPNQVLTM
                     QENWIGKSEGLEFSLNLDEESKQKTKESSLEVFTTRADTIYGVSYIALAPEHKIVQNL
                     LSQNLLNQDILNKIKVIQNQSPRERQSSEKEGYFLGIYAIHPLSGEKIPLWVANFVLA
                     DYGSGAVMAVPAHDERDFEFATKYNLAIKQVIQTQENLPYTQKSGKLIHSQEFDNLDC
                     NEARLKIISQFEAKNIGKRVVNFKIRDWGVSRQRYWGAPIPMIKCQICGIVPQKLENL
                     PITLPEDVQITGEGNPLDKHPTWKNCICPKCGKEAQKESDTLDTFFESSWYFARFASD
                     EKTWQEKALDEKSVKYWMSVDQYIGGIEHAILHLLYARFFQKALRDLGYLTQNEPFDR
                     LLTQGMVLKDGAKMSKSKGNVVDPDEIIEKYGADTARLFILFAAPPAKELEWNDDAVE
                     GAYRFICKLYDRAQNVKKGELVELKQENLNKEEKYARLKVYEALKKSFEVYHQSFAFN
                     TLIAACMEALNALALCKNEALEQEAFYIILNILEPIIPHVCFELSEELFKCKNFKKLE
                     LKEEVFVKDTLNLAVSINGKKRAEFEISSSASKEEILVFAKENTAKWLEGKSIVKEIY
                     VEGKLVNLVIK"
     gene            6476..6988
                     /gene="lptE"
                     /locus_tag="ACJFD7_000758"
     CDS             6476..6988
                     /gene="lptE"
                     /locus_tag="ACJFD7_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0043165 - Gram-negative-bacterium-type cell
                     outer membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HGG0859596.1"
                     /translation="MKKILIFCIGLFLGACGYVPTSKIANNIFDEKVYVNVELSQQDP
                     KNSIYVADTLKEMVISKLGRKLALKHEADDVINVKMNNLEFIPLAYDKNGYVISYKAK
                     LNLDFNVVFKDGSSQAFSTSGSYNFEISPNSIISDSARYEAIRAASSEAFDEFISVIA
                     IKGQKRDSKY"
     gene            6972..8369
                     /locus_tag="ACJFD7_000759"
     CDS             6972..8369
                     /locus_tag="ACJFD7_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859597.1"
                     /translation="MIPNTNEIAKQTLIALKERKLKPTPENYTEIFEELSLKYGITSS
                     NKAKLDKYKTLLLPIYQQELNSKTIRSLEELISFLISVLNRQSGKQFSEFFDFLYTIS
                     KTLQISKDKKIRDLAKVTSIRISKTMDSESIYLLTKKWKELERNYDENDLEEQARKYG
                     ISKYDDYGSVIKKLLVKLEERSYEHFSELLCLGLNPSLVEDLKIQGFIQNLTQKPFVI
                     GEENFKNELMEFINHRIMVDNMYVQKNLNFFNDNLKKIYELLVLLNKSNEKNMDFINT
                     LKPDENGEVKLSFEDLKLKFKQLGEKITSLNNQIEFTQSLEEREAWSVLKELDKMDEN
                     FNKYKVNYSLALFSIVNYRFIMEKYGMGSLNEIFVRFKKILKDSCSEFDELWMIDEKS
                     YLIVSPGKSKDEITQLVNTNLKTIENFRFIYKQDIITPKIHVAYLDKQSKPSINILDE
                     LIKQIAAVNEQYNES"
     gene            8335..9519
                     /locus_tag="ACJFD7_000760"
     CDS             8335..9519
                     /locus_tag="ACJFD7_000760"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004326 - tetrahydrofolylpolyglutamate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008841 - dihydrofolate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="folylpolyglutamate synthase/dihydrofolate
                     synthase family protein"
                     /protein_id="HGG0859598.1"
                     /translation="MQRLMNNIMKVENFLAQKSINYDKIDRFLMFRMYEKYKKYFKNI
                     PIIQLIGTNGKGSTGRYLTQLLENLNYKIGHYTSPHIFSFNERFYLDGKIANDEELEQ
                     AHIRLEEIFKQDLQKLSYFEYATFLAMILFQKCDFIVLEAGVGGEYDATSVFERRMNI
                     FTRIGFDHIQILGNSLEDIARTKLKVMAPIALISDEQEQNVLNLAKKIAFLKKANLQV
                     SSLNPFLKEKFEIYCEKFVLPCFLKHNLKLALKACEILTSQEKTLEALKKLQELNLQG
                     RCQEISPNFFVDVGHNPMAAKAMLDKFQGEKINLIYNAYLDKDIFQILNTLKPIIDTI
                     QIYKYKSAERKLADDEIYSIASKLGIQCKEFVKLEENKKNLVFGSFMLVENFLKEWCG
                     KK"
     gene            9506..10408
                     /locus_tag="ACJFD7_000761"
     CDS             9506..10408
                     /locus_tag="ACJFD7_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HGG0859599.1"
                     /translation="MVKNKFTITITDINGSRHFYLNQIIKKIVFYTIAFIVLFLVFSG
                     FYIKYLDSKLSDISEKREELLKKSKELELSNSQMQKSIEEKTQQYAAIEDKIASFEEA
                     LGLEVENNLTISARLDNLQLTNEQQLGILGQIPNGWPIENKGITGNFGWREHPLLKRR
                     EFHPGIDLRAEIGTPIYAPASGVVEFSGYSDNGYGYNVILLHNFGFKTVFAHMMRKEV
                     VKAGQFVNKGQLIGYSGNTGLSTGPHLHYEVRFINKTLEPLYFLNLQRKNMNDFFNQE
                     RRVPWQSLIKAVSAQHPALAQKQQ"
     gene            10345..10740
                     /locus_tag="ACJFD7_000762"
     CDS             10345..10740
                     /locus_tag="ACJFD7_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HGG0859600.1"
                     /translation="MAIFNKGGISPTSSSSSETTVISSGARIEGKFYFASMLHVDGEL
                     SGIIHSESIVVIGKNGNLKGELQADKIVVNGCFEGQLEANSLEILAGGVVNGDISTQK
                     ISIENGGRFNGTSKIKEDTIKLIENNNEE"
     gene            10740..13676
                     /locus_tag="ACJFD7_000763"
     CDS             10740..13676
                     /locus_tag="ACJFD7_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HGG0859601.1"
                     /translation="MQASFYEYLQNPKICELFLCKDEKQADLLAQVSRFKGLKTFVLP
                     DFRAQFGDDLRAFSKELFDLCKILNAYHKEEEKKILISPLNTVLKKLPSKKHLQNYHI
                     DKKQNFDLKCFEDEISRLGYEFVDIVQDKGEISIRADIIDIFCINEENPIRILLFGEE
                     IESIRYFDLQSQKSIPNELEHFEICPFLKYFDKENYEIFKDKLEDFQSDTLIHDINSL
                     GFWCIDDFFDYLELDFLACEKFDINEYEKDISFVNAKILPQAKKFKELQSSYNKDFFE
                     FHKNKKITLLAKNEALFKALELEDTQNIHFVKSDLRLNLISPEELIISLNQKEKQKTR
                     KKASLIIDELKNGDYIVHEDYGIGKFLGLEMIVISGAKKEFVAIEYQNSDKLLLPVEN
                     LYLIDKYLGVSGSIPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMAAKRSLVQAKKI
                     TVDLNRQTDFIASAGFIYTSDQDKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA
                     IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNL
                     KENKACVVVGTHALLSVECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPI
                     PRSLNQALSSIKSYSVLQTPPEDRMDVRTFVKENDDALLKEAIARELRRGGQIFYIHN
                     HIASIEQCKKHLLELFSTLRILILHSKIDAKMQEEEMLKFENKEYDLLLSTSIVESGI
                     DLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL
                     ESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEV
                     DQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVHEVYEIEGEIEDRFGKL
                     DIYTKQFLSLITIKILALNKFKSISNYEQNIQFTALNDEKELIKAKSKDDDDILEAIL
                     THLRKV"
     gene            13678..14439
                     /locus_tag="ACJFD7_000764"
     CDS             13678..14439
                     /locus_tag="ACJFD7_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HGG0859602.1"
                     /translation="MDWNKTYAAIYRARKDYLKPIFEIDPIALKDLVGMESQKKALYE
                     NTLNFIQDKGVNHALLWGSKGTGKSSLIKAIFNEFKEQGLRLVELNKEDLFALADIID
                     EIRLENFKFILFCDDFSFEKGDDSYKFLKPLLEGSIEKAPNNVIIYASSNRRHLLSES
                     ITDNLDTQITHTELHLSDAAEERLSLSDRFGLWLSFYQGNLEEYLKMIDFYFKDYSCD
                     KELLHVKAKEFATLRASRSGRTAKQFYLAFKENFK"
     gene            14436..15122
                     /locus_tag="ACJFD7_000765"
     CDS             14436..15122
                     /locus_tag="ACJFD7_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HGG0859603.1"
                     /translation="MTGAQIFTKLLNLDLNYHDFDWLENQGLSEFELLISVVLTQNTN
                     WKNVLKALENLKKENIASLEQINTLSNLELATLIKPSGFYNTKTKRLKGLVESIINTY
                     ENLENFKTNASREWLLNIKGLGFESVDSILNYLCKREILVVDNYSLRLAFYLGYEFEN
                     YEELREFFQSDIESEQENLYKILGKKCELYELYQIFHALIVAFAKQSFKGQKLSPKGE
                     EWIKILKEDL"
     gene            15119..15931
                     /gene="thiD"
                     /locus_tag="ACJFD7_000766"
     CDS             15119..15931
                     /gene="thiD"
                     /locus_tag="ACJFD7_000766"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008902 - hydroxymethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0008972 - phosphomethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HGG0859604.1"
                     /translation="MKAKGSELIPVLTIAGSDCSGGAGIQADLKTFSAHNLFGMSVVL
                     SVVAENTARVISVHDIPTQSVDEQMLAVFEDIVPKATKIGMIGSCELMSCVAKNLSEF
                     KPQNVVIDPVMFAKNGYALMPQENCDFFKQTIIKFADILTPNIPEAEFLCGFKIANEE
                     QMIKAAKHLCSLGVKAVLLKGGHSEANANDVLYNGKEIYILKGERIETKNTHGTGCTL
                     SSAIASNLAKGKDLFHAVSEAKEYVRNAIYYSLNLGKGCGPTNHFFKFLDEK"
     gene            15921..16553
                     /gene="thiE"
                     /locus_tag="ACJFD7_000767"
     CDS             15921..16553
                     /gene="thiE"
                     /locus_tag="ACJFD7_000767"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HGG0859605.1"
                     /translation="MKNKLDLSLYLVATKGNKSEECFLNTLENAIKGGVSIIQLREKE
                     LNAREFYKLGLKVQKLCKSYKIPFLINDRVDIALALDADGVHLGQEDLEAKLARKLLG
                     DEKIIGLSLKKLEQLEFIQGVNYLGCGAIKATPTKESSLLSLELLSQICDKSPIGVVA
                     IGGIDKEALVELKGINLSGVAVVRAIMDAKDAFLAAKELKRKIYENLSLK"
     gene            16531..17160
                     /locus_tag="ACJFD7_000768"
     CDS             16531..17160
                     /locus_tag="ACJFD7_000768"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HGG0859606.1"
                     /translation="MKIYLLNETPFEGVENLILNEIVFYDFSVDLSLYDALICTSKNA
                     LKALQHAKITLNFKLNLYAVGQSTAQYAKNLGFKKIKIPSKAYGKDLFLEFKEELKMQ
                     KCLYLRAKNIVSTLNLDLKNVGVDLDEMIVYENVFKKGDKKLIYPAIFIFTSPLSVEN
                     FLKFYSLKEEDKVVVIGQSTAKKLLNFKNLYICENQSLLDCVKLAKTLV"
     gene            complement(17157..17609)
                     /locus_tag="ACJFD7_000769"
     CDS             complement(17157..17609)
                     /locus_tag="ACJFD7_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859607.1"
                     /translation="MKKAYVLIWTIFLILLISLWMSLTLNISSYTPKIIQDSYYYLQA
                     QILSHNATQFSKYFLYQAKQENKECLDNIYFNYTKALIKIKYFYPIAQCVNFKFSNFN
                     PDANLSKDGVIIAHISIALNRDKNVNDEILLTKSIIIYPKENFWNLKN"
     gene            complement(17606..18268)
                     /locus_tag="ACJFD7_000770"
     CDS             complement(17606..18268)
                     /locus_tag="ACJFD7_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859608.1"
                     /translation="MSKAFTLFELIISLILFTFITSLLSKPLMDFYHLNFTALHTNNL
                     ITQAHLNLLKIEKLIQNCINITFSQNTLKCLLKDELISLKDNKLYLINSALILENNHT
                     LYSPHSDFKTQLQNRKDLYNDNEHISYAYKINKIEKISILENGISANFTGSFIPLQAQ
                     LVIKLQNEELIYEIKPKFNEQLNQQGLISKNISSFNLQNNKLKICLKRQTKHCLEKRI
                     LL"
     gene            complement(18265..18567)
                     /locus_tag="ACJFD7_000771"
     CDS             complement(18265..18567)
                     /locus_tag="ACJFD7_000771"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HGG0859609.1"
                     /translation="MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERL
                     YKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDGIFQFQKLYFQDQNYSVYFKE"
     gene            complement(18564..19295)
                     /locus_tag="ACJFD7_000772"
     CDS             complement(18564..19295)
                     /locus_tag="ACJFD7_000772"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HGG0859610.1"
                     /translation="MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKT
                     LLYKDFNIEGKDVILAFKPYALENIAQMLKGQARILISVLANVDFEKLQTIKAQNYVR
                     IIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
                     FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTI
                     KGIKILEQKGIRGSFFEAINASSAK"
     gene            complement(19295..19684)
                     /gene="fliW"
                     /locus_tag="ACJFD7_000773"
     CDS             complement(19295..19684)
                     /gene="fliW"
                     /locus_tag="ACJFD7_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliW"
                     /protein_id="HGG0859611.1"
                     /translation="MTLAVKCPILGFEETKNMEFSTIDEVFVRLKSLDGKDFSFVLIN
                     PYLIRPDYEFDIPTYYQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNN
                     TMVQVILDTVNYPDFFQADQIANYIKK"
BASE COUNT         7160 a         2265 c         3529 g         6753 t
ORIGIN      
        1 tatattctct ttgccatttg tagcatgata aacactaacc ccatatttac ttgcataaaa
       61 tttcattaag agttgctgga gtttgtattc gctgctatta ttaaaccaag cattgttgct
      121 tagggctata ataatttgtg aattttgata gttttgttct ttggtagctt cataacaaat
      181 tgcatttgtg ataatttgat tatctaattt atatttgctt tgtataggac ctttggaaaa
      241 ttcttcaata tttttgagaa aatatttttt tgttaagtct ttaaaaaatg gaatttcttc
      301 accaaaggga actaaaaaat gcttatttaa aatatagaca ttgccttttt taaagatata
      361 agtgctattg taagtatgct ctttttcaac atgaaatgct cctgtaataa tggtgatttt
      421 ataagataat tctttaagca tgagctcata tttggtattt tttaaatcaa aagcaaaagc
      481 ggtttcaggc aagattacaa gttctttttt ttcatttata gcttgaagta tatcttgaat
      541 taagatatca gaatttgatt ttaaattttc ttgtaaaaat ttttgatttt gagagatatt
      601 agtattgatg agtttgtagt ttaaattaag agtttgagct tgtttttcat tatattgaaa
      661 tccactaaag aataaaataa gaacaatcgc tattttataa tatcttgata tataaccctc
      721 atagatgaaa tatgctatta aaaatatgca aataatacca cgataacttg ggtcaaaaaa
      781 accataaact gtaaaaattc cccaattaag ccaatcaaat cctaaaggat ggataaaact
      841 tatgcaaaaa attccacaaa gccttaaaaa atcaaatttt aataaataac ataatctaaa
      901 aagtagtcca taaataaaac caatgataat tggtataatt ggtactaaat agtttagatt
      961 aaaataaatt gaagataaac caatccacca aaaccaaaga atccctacaa aaaaacctat
     1021 ccaaaaatat tgtttagaat ttttactttt tagaagtaaa actaaccccc aaatagctaa
     1081 aaatgggcta atagtttgtg taaaaatatt ttcaaaaaat gatagataaa tagaatttga
     1141 aagtaaaatt gcaataaaaa atacttttat tattttaaaa atgatagaat tagtgtttaa
     1201 tttttttgga ataaagggaa aatatggcag aaaattcaat tttaacttca ttgttacctc
     1261 ttgtagtgtt atttgcaatt ttttatttct tggtgatcag accgcaacaa aaacaagcaa
     1321 aagcacataa acaaatgctt gagtctttgc aaaaaggaga taaaatcatc actaatggcg
     1381 gacttatttg tgaagtcgta aaaccagagg aggattttat caaagttaag cttaatgaag
     1441 acaatgttac tgcaaaaatt tcaagagaat ttatagcaaa gaaaattgat gcgtaattct
     1501 aaaatcaatt atcgcttgat tatttttata gcggtattta tttttggagt ggctttttca
     1561 ctcccttctt ttttgcagtc agaacgtggt gcgaagatta atttagggct tgatttgcaa
     1621 ggtgggcttt atatgctctt aggtgtagat aatgaagaag ctgtaaaatc taaaataaaa
     1681 tcaattgcat cttcattgag ttattctttt aataaagaaa atattttaaa tgatggctta
     1741 aatacccatg atgatatttt agaatttact ttgcttgata atgcagatat tgcaaaagtt
     1801 gaaaatttgc ttaaagaaat aaaaggaatt aatatacaaa gtgaaaatat gcactataaa
     1861 atttctttta cctcagaaga agtaaaaaat atagaaaatt ttgcactttt gcaagcagtt
     1921 gaaaccataa gaaataggct tgatcaattt ggtttagcag agccaacagt tgctaaacaa
     1981 ggtgatgata agattttggt tgaacttgca gggattaaaa ccaaagaaga tgaactaaga
     2041 gcaaaagaac gcatcacaaa agcagcacat ttgcaactta tggaagttga tgattctaaa
     2101 atgggtcaag cttctacaat gagcgatgct gaggctgcga gttatggact gattttagtg
     2161 cctgattcta gaaatccaaa tttaaaatat accttaaaaa gtatacctat tttagatgga
     2221 tctatgctta ctgatgctag agtagggatt agtgataaga gtaattatcc tgtgattaat
     2281 tttactttaa atgccgaggg ttctaaaaaa tttgctgatt atacaggagc aaatgttgga
     2341 aagcgtcttg ctattgtact tgataataaa gtatattctg ctccatctat caatgaacgc
     2401 ataggcggag gtagtgggca aatcagtgga gcttttactc aagaagaagc acgcgatgtg
     2461 gcggtagctt taagaagtgg agctttgctt gcgcctgtaa aattacttga acaaagaagc
     2521 ataggaccat ctttaggtgc tgatagtatt aaaatgagta tgatagcctt aatcggtgca
     2581 tcggttttta ttgtagtatt tatgatgatg tattacggtg tggcaggaat ttttgcaaat
     2641 attgcaatgc tagttaatgt tttggtagta gttgccgtta tggctatgtt tggagcaact
     2701 ttaactttac cagggatggc aggacttgtt ttaactgtgg gtatggcagt agatgcaaat
     2761 gtgattatca atgagcgtat acgagaactc ttgcgagatg gagtaaatat aagagttagt
     2821 atagaacaag gttataaaaa tgctatgagt gcgattatag attcaaatat cacttcttta
     2881 gttacttcgg tagcacttta tgcctatgga acaggagcag ttaaaggttt tgctgtgact
     2941 ttgggaattg gtatcgttgt ttctatgatt acagctattt taggaactca tggaatgttt
     3001 gattatttta tgcaacgcat agaaaaaaat aataatacaa gattttggtt tggctatagg
     3061 agaagataat gcagtttttt agcgaaaaga aaatttatga ttttatgaga atgcgttttg
     3121 ctgctatttc tctttctttt attttgtttt ttggttctat ttatttgctt tgggataggg
     3181 gtttgcaata tggcattgat tttagcggag gaactttagt tcagcttaaa tatgaaaatg
     3241 cagctcctat aacacaaatt cgagaaattt tagaaaaaca aggaactttt caaaatttat
     3301 ctgtaactga atttggaagt aatgaagaag taaccatacg ctttttagga agtaatgata
     3361 atgtaagcaa tgatataggc gagcatataa gcactctttt aaaggatacg ggaaaatttg
     3421 aagtgcgtcg tgctgatgtg gtaggtccaa aagtaggtga tgaacttaga aataaaggac
     3481 ttatggctat agctgtatct ttgatagcaa ttttaattta tatagcgttg cgttttgagt
     3541 ggcgttttgc tcttgcggct ataatcagtg aaattcatga tgttgtgatt actttagggg
     3601 caatttcttt atttaaaatt gatgtcaatt tagatacttt ggctgctgtt ttaactgtgc
     3661 ttggatactc tttgaatgat acaattatta tttttgatag aatcagagaa ggtaataaaa
     3721 caagtaaaaa aaccgaactt gcacctatta ttaatgaaag tgtttcagca actttatcaa
     3781 gaacggtttt aacttcaggg ttgactttag caaccgttgt gatactttat ttctttggcg
     3841 gggaaatgat acaaggattt tctttggctt taattgtagg tattatagcg ggaactttaa
     3901 gctctatctt tgttgcaagt ccgacattat tatggtttaa atttagtgtg cttgagttta
     3961 gaaataaaga aattgaaaaa gcaaaaagaa aacaagataa agaacgcaat cgtgcaatgt
     4021 atgaaaaagg aacagtgtaa ggagaattta tggcttatga agcaagttta atagaaaaaa
     4081 aatggcaaaa aatttgggat gaaaatgaat attttgagcc aaaagatgat ttaaatttgc
     4141 ctaaaaaata tattttatcg atgttccctt atcctagcgg acgaattcac atggggcatg
     4201 taagaaatta tactataggt gatgctttag caagatatta tcgcaagata ggttttaatg
     4261 ttttacatcc tataggtttt gatagttttg gtatgcctgc tgaaaatgca gctattaaac
     4321 ataaaattca tcctaagtca tggacttatg aaaatatagc ttatatgaaa aaagaacttt
     4381 tttctttagg tttttctttt tctaaaaaaa gaatgcttgc tacttcagat ccactttata
     4441 caaaatttga gcaagaattt tttattaaga tgtttgaaaa aggtttgatt tacactaaag
     4501 aagcaaatgt aaattggtgt gaacaagatc aaacggtttt ggctaatgag caagttgaag
     4561 acggaaaatg ttggcgttgt ggtcatgaag tagtgcagaa aaaaatgcca ggttattatg
     4621 taaaaatcac tgcttatgct gaggaacttt taaaagattt agaaaaatta aaagataaat
     4681 ggcctaatca agttttaact atgcaagaaa attggattgg taaaagcgaa ggtttggaat
     4741 tttctttaaa tttagacgaa gaaagcaagc aaaaaaccaa agaaagttct ttagaagttt
     4801 ttactacaag agcagataca atttatggag tttcgtatat cgctttagct ccagaacata
     4861 agattgttca aaatttgctt tcacaaaatt tattaaatca agatatatta aataaaatca
     4921 aagttattca aaatcaaagc ccaagagaaa gacaaagttc tgaaaaagaa ggttattttt
     4981 taggaattta tgccattcat cctttaagcg gagaaaaaat tcctttatgg gtggctaatt
     5041 ttgtcttggc tgattatggt agcggagcgg ttatggctgt tccagctcat gatgaaagag
     5101 attttgaatt tgcaacaaaa tataatcttg ctatcaaaca agttattcaa actcaagaaa
     5161 atttacctta tacgcaaaaa tcaggaaagt taatccatag tcaagaattt gataatcttg
     5221 attgtaatga ggcaagatta aaaattattt ctcagtttga agctaaaaat ataggaaaaa
     5281 gggttgtaaa ttttaaaatt cgtgattggg gtgtttcacg ccaaagatat tggggtgcgc
     5341 ctattcctat gattaaatgt caaatttgtg gtatagtgcc tcaaaaacta gaaaatttac
     5401 ctattaccct acctgaagat gtgcaaatta caggtgaggg taatccactt gataaacatc
     5461 caacttggaa aaattgtatt tgtcccaaat gtggcaaaga ggctcaaaaa gaaagtgata
     5521 ctttagatac tttttttgaa agttcttggt attttgcacg ttttgcaagt gatgagaaaa
     5581 cttggcagga aaaagcttta gatgaaaaaa gtgtaaagta ttggatgagt gtggatcaat
     5641 atataggtgg tattgaacat gcaatcttgc atttgcttta tgcgagattt ttccaaaaag
     5701 ctttaagaga cttgggttat ttaacacaaa atgaaccttt tgatagactt ttaactcagg
     5761 gtatggtgtt aaaagatgga gctaaaatgt caaaatcaaa aggcaatgtt gtagatcctg
     5821 atgagattat agaaaaatac ggtgctgata ccgcaagact ttttatactt tttgctgcgc
     5881 ctccggctaa agagcttgaa tggaatgatg atgcggttga aggggcttat agatttattt
     5941 gtaaactcta tgatagggcg caaaatgtta aaaaaggtga gcttgtagaa ttaaaacaag
     6001 aaaatttaaa taaagaagaa aaatatgcaa gattaaaggt atatgaagct ttgaaaaaat
     6061 cttttgaagt ttatcatcaa agttttgctt ttaatacttt aattgcagct tgcatggaag
     6121 ctttaaatgc cttagcgctt tgtaaaaatg aagctttgga gcaagaggct ttttatatta
     6181 ttttaaatat tttagagcct attattcctc atgtttgttt tgagcttagc gaggagcttt
     6241 ttaaatgtaa aaatttcaaa aaattagaac ttaaggaaga ggtttttgta aaagatactt
     6301 taaatttagc tgtaagtatt aatggtaaaa aaagggctga atttgaaatt tcaagtagtg
     6361 cgagtaaaga agaaatttta gtttttgcaa aagaaaatac tgctaaatgg cttgaaggta
     6421 agagtatagt taaagaaatt tatgtggaag gaaagctagt taatctagtg attaaatgaa
     6481 aaagatttta attttttgta taggtttatt tttaggtgct tgtggatatg ttcctacatc
     6541 aaaaatcgct aataatattt tcgatgagaa ggtttatgtt aatgttgaat taagtcaaca
     6601 agacccaaaa aatagtatct atgttgccga tactttaaaa gaaatggtaa tttcaaaatt
     6661 agggcgtaaa cttgctttaa aacatgaagc tgatgatgta atcaatgtta aaatgaataa
     6721 tttagaattt attcctttag cttatgataa aaatggctat gttattagtt ataaagctaa
     6781 attaaattta gattttaatg ttgtctttaa agatggttca agtcaggctt ttagtacaag
     6841 tggaagttat aattttgaaa tttctccaaa tagtattatt agtgattctg caaggtatga
     6901 ggctattcga gcagcttcaa gcgaggcatt tgatgagttt atttccgtaa ttgctattaa
     6961 agggcaaaaa cgtgattcca aatactaatg aaatagcaaa gcaaacttta attgcattaa
     7021 aagaaagaaa actaaaacca actcctgaaa attatacgga aatttttgaa gaattatctt
     7081 taaaatatgg tattacaagt tcaaataagg ctaaacttga taaatacaaa accttgcttt
     7141 taccgattta tcaacaagaa ttaaattcta aaactataag aagtttagaa gaactaatta
     7201 gttttttaat ttctgtttta aatagacaaa gcggaaaaca atttagtgaa ttttttgatt
     7261 ttttatatac catatctaaa actttgcaaa taagtaagga taaaaagata agagatttgg
     7321 ctaaggtgac ttcgattaga atttctaaaa ctatggatag tgaaagtatt tacttgctta
     7381 ctaaaaaatg gaaagagctt gaaagaaatt acgatgaaaa tgacttagaa gaacaagctc
     7441 gcaaatatgg tattagtaaa tatgatgatt atggtagcgt gattaaaaaa ctcttagtta
     7501 aacttgaaga gcgtagttat gagcacttta gtgaattatt atgcttgggt ttaaatcctt
     7561 cattggtaga agatttaaaa attcaaggtt ttatacaaaa tttaacacaa aagccttttg
     7621 taataggcga agaaaatttt aaaaatgaac taatggaatt tataaatcat cgtataatgg
     7681 ttgataatat gtatgtccaa aaaaatttaa atttttttaa tgataatcta aaaaaaatct
     7741 atgaattgct tgtcttactt aataaatcga atgaaaaaaa tatggatttt atcaatactt
     7801 taaaaccaga tgaaaatggg gaagtaaaac ttagttttga ggatttaaaa ctaaaattta
     7861 aacaacttgg agaaaaaatt acatctttaa ataatcaaat tgaattcacg caaagcttag
     7921 aagagagaga ggcttggagt gttcttaaag agcttgataa aatggatgaa aattttaata
     7981 agtataaggt taattattct ttagctttat tttctatagt aaattaccgt ttcattatgg
     8041 aaaaatatgg tatgggaagt ttgaatgaaa tttttgttcg atttaaaaaa attttaaaag
     8101 attcttgtag cgaatttgat gaactgtgga tgatagatga aaagagttat ttgattgttt
     8161 cgccaggaaa aagcaaagat gaaattacac agcttgtaaa tacaaatctt aaaactatag
     8221 aaaattttag atttatttat aagcaagata ttataactcc taaaattcac gtggcttatc
     8281 ttgataagca aagtaagcca agtattaata ttttagatga gttaataaag caaattgcag
     8341 cggttaatga acaatataat gaaagttgag aattttttag ctcaaaaaag tataaattac
     8401 gataaaattg atcgtttttt gatgtttaga atgtatgaaa aatataagaa atattttaaa
     8461 aatattccca taattcaact tataggcaca aatggtaaag gtagcacggg tagatattta
     8521 acccaacttt tagaaaattt aaattataaa atagggcatt atactagtcc gcacattttc
     8581 agttttaatg aaagatttta tcttgatggt aagattgcaa atgatgaaga attagaacaa
     8641 gctcatataa gacttgaaga aatttttaaa caagacttgc aaaaattaag ttatttcgaa
     8701 tatgctactt ttttagctat gattttattt caaaaatgtg attttattgt tttagaagca
     8761 ggagtgggtg gagaatatga tgctacttct gtttttgaaa gaagaatgaa tatttttaca
     8821 agaattggat ttgaccatat tcaaattttg ggcaattctt tagaagatat tgcaagaacc
     8881 aagcttaaag ttatggcgcc tatagcactt ataagtgatg agcaagagca aaatgtttta
     8941 aatttagcaa aaaaaattgc ttttttaaaa aaagctaatt tgcaagtttc ttccttaaat
     9001 ccttttttga aagaaaaatt tgagatttat tgtgaaaagt ttgttttacc ttgtttttta
     9061 aagcataatt taaagcttgc attaaaggct tgtgaaattt taacttcgca agaaaaaacc
     9121 ttagaagctt taaaaaagtt acaagagtta aatttacaag gaagatgcca agaaatttct
     9181 ccaaattttt ttgttgatgt gggtcataat cccatggctg ctaaggctat gcttgataaa
     9241 tttcaaggag aaaaaataaa tcttatttat aatgcttatt tggataagga tatttttcaa
     9301 attttaaata cattaaagcc tattattgat acaatacaaa tatataaata taaaagtgca
     9361 gaacgaaagc tggccgatga tgaaatttat agtattgcat caaagctagg tatacaatgc
     9421 aaagaatttg taaaattaga agagaataaa aaaaatctag tttttggttc ttttatgctg
     9481 gtagaaaatt ttttaaagga gtggtgtggt aaaaaataaa ttcactatta ccattacaga
     9541 tattaacggt tcaagacatt tttatttaaa tcaaataatc aaaaaaatag ttttttatac
     9601 tattgctttt attgttttat ttttagtttt tagtggtttt tatatcaaat atctcgatag
     9661 caaacttagc gatatcagtg aaaagcgtga ggagcttttg aaaaaaagca aagaattgga
     9721 attatctaat tcgcaaatgc aaaaaagcat agaagaaaaa actcagcagt atgcagctat
     9781 agaagataaa atagcttctt ttgaagaggc tttgggctta gaagtagaaa ataatcttac
     9841 aattagtgca agacttgata atcttcagct taccaatgag cagcaacttg gaattttggg
     9901 acaaattcct aatggatggc ctattgaaaa taaaggcatt acaggaaatt ttggctggag
     9961 agagcatccg cttttaaaaa gaagggaatt tcatcctggt attgatttaa gagcagaaat
    10021 tggtacccct atttatgcac cagcaagtgg agtagtggaa ttttcaggtt atagtgataa
    10081 tggctatggc tataatgtaa ttttattgca taattttggt tttaaaacag tatttgctca
    10141 tatgatgcgc aaagaagtgg tcaaagcagg tcaatttgtt aataaagggc agttgatagg
    10201 ttatagtggc aatacaggtc tttctacggg gccgcatttg cactatgagg taaggtttat
    10261 taataaaact ttagaacctt tgtatttttt aaatttgcaa agaaaaaata tgaatgattt
    10321 ttttaatcaa gaaaggagag ttccatggca atctttaata aaggcggtat cagcccaaca
    10381 tccagctcta gctcagaaac aacagtaatt tcttcaggtg cgagaattga gggtaaattt
    10441 tattttgctt ctatgctcca tgttgatgga gagttaagtg gcattattca ttctgaaagc
    10501 attgtggtta tcggaaaaaa tggaaattta aaaggtgaat tacaagcaga taaaattgta
    10561 gtaaatgggt gttttgaagg gcaacttgag gctaatagtt tagaaatttt agcgggcgga
    10621 gttgttaatg gtgatatttc aacgcaaaaa atttctatag aaaatggcgg tcgctttaat
    10681 ggaactagta aaattaaaga agatactatc aaacttattg aaaataacaa cgaagaataa
    10741 tgcaagcttc attttatgaa tacttacaaa atccaaaaat ttgtgaactt tttctttgta
    10801 aagatgaaaa acaagcagat ttactcgctc aagtttcacg atttaagggt ttaaaaacct
    10861 ttgttttacc tgattttaga gcgcagtttg gagatgattt aagggctttt tctaaagaac
    10921 tttttgatct ttgtaagatt ttaaatgctt atcataaaga agaagaaaaa aaaatcctta
    10981 tttctccttt aaatactgtt ttaaaaaaac ttccttcaaa aaaacattta caaaattatc
    11041 atatcgataa aaaacaaaat tttgatttga aatgttttga agatgaaatt tcaagattgg
    11101 gatacgaatt tgtagatata gttcaggata aaggtgaaat ttcaattcgt gcggatatta
    11161 ttgatatttt ttgtatcaat gaagaaaatc ctattagaat tttacttttt ggcgaagaga
    11221 ttgaaagtat aagatatttt gatttgcaaa gtcaaaagtc tattcctaac gaactagaac
    11281 attttgaaat ttgtcctttt ttaaaatatt ttgacaaaga aaattatgaa atttttaagg
    11341 acaaattaga agattttcaa agcgatactt taatacatga tatcaattct ttaggctttt
    11401 ggtgtattga tgattttttt gattatttgg agcttgattt tttagcttgt gaaaagtttg
    11461 atattaatga atatgaaaaa gatataagtt ttgtgaatgc aaaaatttta cctcaagcta
    11521 aaaaatttaa agaattgcaa agttcttaca ataaagattt ttttgaattt cataaaaata
    11581 aaaaaatcac acttttagct aaaaacgaag ctttatttaa agctttagag cttgaagata
    11641 ctcaaaatat ccattttgta aaaagtgatt taaggcttaa tcttattagt cctgaagagc
    11701 taattatttc tttaaatcaa aaagaaaaac aaaaaacaag aaaaaaagct agtttgatta
    11761 tagatgagct taaaaatggg gattatatag tacacgaaga ttatgggata ggtaaatttt
    11821 taggtcttga gatgatagtg ataagcggag caaaaaaaga gtttgttgct atagagtatc
    11881 aaaattctga taagctttta ttaccagtgg aaaatcttta tttgattgat aaatatttgg
    11941 gcgtgagtgg atctattcca agcttagata aactaggtaa aacaagcttt attaaactta
    12001 aagaaaaatt aaagactaaa cttttagcca tagcttctga aattgttatt atggcggcta
    12061 aaagatcttt ggtgcaagca aaaaaaatta cagtggattt aaatagacag actgatttta
    12121 tagctagtgc gggttttatt tatacaagcg atcaagataa agcctgtcat gaaattttgc
    12181 aagattttca aagtggaaaa gtcatggata ggcttttaag cggtgatgtg ggttttggaa
    12241 aaacagaagt cgctatgaat gctatttatc cagtagttaa aagtggattt tgcgcatttt
    12301 tatttgcgcc tacgactttg ctttctcatc agcattataa aaccttaaaa aagcgttttg
    12361 atccttttga tataaaggtt tttaaactgg atcgctttac aagtagtgca gaaaaaaaac
    12421 aagttttaca aaatttaaaa gaaaataaag cttgtgtagt tgtaggaact catgcacttt
    12481 taagtgtaga atgtgaaaat ttagcccttg ttattattga tgaagagcat aaatttggag
    12541 tgaagcaaaa agaaaagctt aaagaaatca ctcaaaattc acatatttta tccatgtcag
    12601 caacccctat accaagaagc ttaaatcaag ctttaagttc tataaaatct tatagtgttt
    12661 tgcaaactcc accagaagat agaatggatg taagaacttt tgtcaaagaa aatgatgacg
    12721 cacttttaaa agaagctata gcaagagagt taagacgtgg tgggcaaatt ttttatattc
    12781 ataatcatat tgcaagtata gagcaatgta aaaagcattt attagaactt ttttctactt
    12841 tgcgtatttt gattttacat tctaaaatcg atgccaagat gcaagaagaa gaaatgttga
    12901 aatttgaaaa caaagaatat gatttgcttt taagtacctc tatcgtagaa agtgggattg
    12961 atttaccaaa tgcaaatact atcatagtag aaaaaagcga tcgttttggc atggctgatt
    13021 tgcatcaatt gcgtgggcgt gtaggaagaa gtgataagca aggttattgt tattttttaa
    13081 ttgaagataa aaatgctatt acaaaagatg ctttaaagcg tctagtttcc ttagaaagta
    13141 attctttttt aggcgcaggt tctattttgg cttatcatga tcttgaaatt cgtggcggtg
    13201 gaaatttatt aggcgtagat caaagtggac atattgagca aattggatat agtttatatc
    13261 ttaaaatgtt agaagatgaa cttaatgctt taagtaaaaa tgaagtggat caaaaagaaa
    13321 ataaacttga tttaaaactc aatgttaatg cctttttaaa cagcgaactt atcagcgaag
    13381 atcgcttaag attagaactt tatagaagac ttagcaagtg tgagcaagtt catgaggttt
    13441 atgagatcga aggtgaaatt gaagatcgct ttggaaaact tgacatttat actaagcaat
    13501 ttttatcttt gattactatt aaaattttag ctttaaataa atttaaaagc attagtaact
    13561 atgagcaaaa tattcaattt actgctttaa atgatgaaaa agaactcatc aaggcaaaaa
    13621 gcaaagatga tgatgatatt ttagaggcaa ttttaacgca tttaagaaag gtttaaaatg
    13681 gattggaata aaacttatgc agcaatttat agagcaagaa aagattattt aaagcctatt
    13741 tttgaaatcg atcctattgc tttaaaagat ttagtaggta tggaaagtca aaaaaaagca
    13801 ctttatgaaa atactttaaa tttcattcaa gataagggag taaatcacgc acttttatgg
    13861 ggatctaagg gcactggaaa atcaagttta attaaagcta tatttaatga atttaaagaa
    13921 cagggcttaa gacttgtcga attaaataaa gaagatttat ttgccttagc agatatcatc
    13981 gatgaaatca gattagaaaa ttttaaattc atactttttt gtgatgattt ttcttttgaa
    14041 aagggagatg atagttataa atttttaaaa cctttacttg agggaagcat agaaaaagcc
    14101 ccaaataatg taattattta tgcgagttca aatcgtaggc atttattaag tgaaagcatt
    14161 actgataatc ttgatacgca aatcacacat acagaacttc atttaagcga tgctgctgaa
    14221 gaaagattaa gtttgagtga tagatttggt ttgtggttaa gtttttatca gggaaattta
    14281 gaagagtatt taaagatgat agatttttat tttaaagatt attcttgtga taaagagctt
    14341 ttgcacgtta aagctaaaga atttgctact ctaagagcaa gtagaagtgg tcgtaccgca
    14401 aagcaatttt atttagcttt taaggagaat tttaaatgac tggagcacaa atttttacca
    14461 agcttttaaa tttggattta aattatcatg attttgattg gcttgaaaat caaggattga
    14521 gtgaatttga gcttttaatt tctgtcgttt taactcaaaa tacaaattgg aaaaatgtct
    14581 taaaagcttt agaaaattta aaaaaagaaa atattgcaag cttagaacaa atcaatactt
    14641 tatccaattt agaacttgca actttaatta agcctagcgg attttataat accaaaacta
    14701 agcgtttaaa aggtttggta gaaagtatca taaacactta tgaaaattta gaaaatttta
    14761 aaacaaatgc aagcagagaa tggcttttaa atatcaaagg tttaggtttt gaaagcgttg
    14821 atagtatttt aaactatctt tgcaaaagag agattttggt tgtagataat tatagtttgc
    14881 gtttggcttt ttacttaggt tatgagtttg aaaattatga agaattaaga gaattttttc
    14941 aaagtgacat agagagtgag caagaaaatt tgtataaaat tttaggaaaa aaatgcgaac
    15001 tttacgaact ttatcaaatt tttcatgctt tgattgtagc ttttgcaaaa cagagtttta
    15061 aaggacaaaa attaagccct aagggtgaag aatggatcaa aattttaaag gaagatttat
    15121 gaaagcaaaa ggaagtgaac ttatacctgt tttaactata gcagggagtg attgtagtgg
    15181 tggagcaggg atacaagctg atcttaaaac ctttagtgca cacaatcttt ttggtatgag
    15241 tgtggtttta agtgtggtag ctgaaaatac cgcaagggtg atttctgtac acgatatacc
    15301 tactcaaagc gtggatgaac aaatgcttgc cgtgtttgaa gatatagtgc caaaggcaac
    15361 taaaatcgga atgataggtt cttgtgaatt aatgagctgt gtagctaaaa atttaagcga
    15421 gtttaaacct caaaatgtag ttattgatcc tgtaatgttt gccaaaaatg gctatgcttt
    15481 aatgccgcaa gaaaattgtg attttttcaa acaaactata ataaaatttg cagacattct
    15541 tactcctaat attcctgaag cagagttttt atgtggtttt aagatcgcta atgaagagca
    15601 gatgataaaa gcagctaagc atttatgcag cttgggggtt aaggcagttt tacttaaagg
    15661 cggacatagt gaagcaaatg ccaatgatgt gctttataat ggaaaagaaa tttatatttt
    15721 aaaaggcgaa cgcatagaaa ctaaaaatac tcacggtaca ggttgtacgc tttcttcggc
    15781 tattgctagt aatttagcta aaggcaagga tttatttcac gctgttagtg aagctaaaga
    15841 gtatgtaaga aatgcgattt attattcact taatcttgga aaaggttgtg gtcctacaaa
    15901 tcattttttc aagtttctag atgaaaaata aattagatct tagcctttat ttggttgcta
    15961 ctaagggaaa taaaagcgag gagtgttttt taaatacttt agaaaatgct ataaaaggcg
    16021 gagtaagtat catacaactt cgtgaaaaag agcttaatgc aagagaattt tataaactag
    16081 gcttaaaggt gcaaaaactt tgcaagtctt ataaaatacc ttttttgatt aacgataggg
    16141 tggatatagc tttagcctta gatgctgatg gggtgcattt aggacaggaa gatttagaag
    16201 caaaattagc tagaaagctt ttaggagatg aaaaaatcat aggcttaagt cttaaaaagt
    16261 tagaacaact tgagtttata caaggagtaa attatctagg ttgtggagct attaaggcaa
    16321 cgcctactaa agaaagttcg cttttaagcc ttgagctttt aagtcaaatt tgtgataaaa
    16381 gccctatagg ggttgtagcc ataggtggga ttgacaaaga agcacttgtt gagttaaagg
    16441 gtataaattt aagcggtgtg gctgtggtta gggcgatcat ggatgctaaa gatgcttttt
    16501 tggcagctaa agagctaaag cgtaaaatct atgaaaattt atctcttaaa tgaaactcct
    16561 tttgaagggg tggaaaatct tattttaaat gagattgttt tttatgattt tagtgtggat
    16621 ttgagtttgt atgatgcttt aatctgcact tcaaaaaatg ctttaaaagc tttacaacat
    16681 gcaaaaatca ctttaaattt caaactcaat ttatacgctg tgggacaaag tacagctcaa
    16741 tacgctaaaa atttaggttt taaaaagatt aaaattccat caaaggctta tggaaaagat
    16801 ctttttcttg aatttaaaga ggagttaaaa atgcaaaaat gtttgtattt aagggctaaa
    16861 aatattgttt caactttaaa tttggatctt aaaaatgtag gtgtggattt agatgaaatg
    16921 attgtttatg aaaatgtttt taaaaaaggc gacaaaaagc ttatctatcc tgctattttt
    16981 atattcacct ctcctttaag tgtagaaaat tttttaaaat tttatagctt aaaagaagaa
    17041 gataaggttg tagttatagg gcaaagcaca gcaaagaagc ttttaaattt taaaaatctt
    17101 tatatatgcg aaaatcaaag tcttttagac tgtgttaagc tcgctaagac tttggtttaa
    17161 ttttttaaat tccaaaaatt ttctttggga taaataataa tgctttttgt gagtaaaatt
    17221 tcatcattga cgtttttatc acgatttaaa gcaatactaa tgtgggctat aataacacca
    17281 tctttgctta aatttgcatc gggattgaag ttggaaaatt taaaattaac acattgtgca
    17341 ataggataaa aatattttat tttaatcaaa gcttttgtgt aattaaaata tatattgtct
    17401 aaacattctt tattttcttg ctttgcttga tataaaaaat atttagaaaa ttgcgttgca
    17461 ttgtgactta aaatttgagc ttgaaggtag taataactat cttggattat ttttggagta
    17521 tagctggata tgtttaaggt caagctcatc catagactta ttagtagtat taaaaaaatt
    17581 gtccaaatta aaacataagc ttttttcaca gtaaaattct tttttcaagg caatgttttg
    17641 tttgtctttt taggcaaatt tttaatttat tgttttgcag gttaaatgag cttatgtttt
    17701 tagaaattaa tccttgttgg tttaattgtt cattaaattt tggctttatt tcatatataa
    17761 gttcttcatt ttgcaatttg ataactaatt gagcttgcaa aggaataaaa ctacctgtaa
    17821 aatttgcaga tataccattt tccaagatag atattttttc aatcttatta attttataag
    17881 catagctaat atgttcattg tcgttatata aatcttttct attttggagt tgtgttttaa
    17941 aatcagaatg aggtgaataa agtgtatgat tattttctaa aataagagca gaattaataa
    18001 gataaagttt attatctttt aggctaatta actcatcttt taaaagacat tttaatgtat
    18061 tctgtgaaaa tgtaatatta atacaatttt gtattaattt ttctatttta agcaagttta
    18121 aatgtgcttg agtgataaga ttgtttgtat gtaaagcagt aaaatttaaa tgataaaaat
    18181 ccattaaagg ttttgaaagt aagctagtta taaaagtaaa aagtattagt gatattataa
    18241 gttcaaaaag tgtaaaagct ttgctcattc tttaaaataa acgctataat tttgatcttg
    18301 aaagtataat ttttgaaatt gaaatatacc atcattaaca aactgttctt gtaaaactat
    18361 aggttttaag gctgaagttt gaagtatgat ggttttaaaa ataggctttt catataattc
    18421 ttcttgaagt ttatagagtc tttcaaaaat atttaaattt tcatagtttt tgtaaagttg
    18481 aatatagtaa taaaaaatgc caatgaaaat taaagatatg atcgttatag cactaatgct
    18541 ttctataagt atgaaagcct ttttcattta gcgctgctag catttatggc ttcaaaaaaa
    18601 cttccgcgaa ttcctttttg ttcgagtatt tttatgcctt ttattgtaac tccgccaggg
    18661 gagcaaatat tttctttgat aatagctgga tgctcatgtt ctagtaaagc actagagctt
    18721 ttaaataaag agcgcgtaag attgagacta agttcttttg acaaaccttc ataaactcca
    18781 gcattagcaa tgctttctgc tataagtgct aaaaaagcag gagcgcagcc gctaatcgcc
    18841 atagctgcat tcatttgtat ttcattatct aatttataag ccgagccaaa agtttttaaa
    18901 atgtctaaaa tttcattttc aaaatgagag tttttaagta tatatggtgt ggttgaagcc
    18961 ttgtatttag ctgctgtatt gggtattatt ctaacataat tttgagcttt gatggtttgt
    19021 agtttttcaa aatcaacatt ggctaaaaca gagattaaga tacgtgcttg tccttttagc
    19081 atttgagcaa tattttctaa agcataaggt ttaaatgcta aaataacatc tttaccttct
    19141 atgttaaaat ctttgtaaag taaggtttta aagccttctt tggcgagggc ttgaagtttt
    19201 tctatacttc ttcctactat acaaatttca taatcatctt ttaacccata ggctaaggct
    19261 gttgccatag atccatttgc aagtatatag agcattattt tttaatataa ttagcaattt
    19321 gatcagcttg aaaaaagtcg ggataattaa ctgtatctag tatcacttgt accatagtat
    19381 tattatcaag attaatgact actggagcta gaaaattcac tgtcgattct tcaatgcttt
    19441 ttgctatggc tactatatta aaaattttca tattagattc aggtgttaaa gaaagaagct
    19501 cttgataata agttggtata tcaaattcat aatcaggtct aatcaaataa ggattaatta
    19561 aaacaaaaga aaagtcttta ccatcaagac ttttaagtct tacaaatact tcatcgatag
    19621 ttgaaaattc catatttttg gtttcttcaa aacctaagat agggcattta acagctaggg
    19681 tcatgttttc tcctcaagtt ataatgt
//
LOCUS       DBBXPZ010000027        19306 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.028, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000027 DBBXPZ010000000
VERSION     DBBXPZ010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19306)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19306)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19306
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.028"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..751
                     /gene="hisJ"
                     /locus_tag="ACJFD7_000774"
     CDS             <1..751
                     /gene="hisJ"
                     /locus_tag="ACJFD7_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HGG0859612.1"
                     /translation="KILSIALVALVGLFLGACSDSKNKESNASVELKVGTAPNYKPFN
                     YKENSKLTGFDTDLVEEIAKKNGIKIVWVETNFDGLIPALKAGKIDMIASAMSATDER
                     RQSVDFTKPYYMSKNLYLKLKNNDSLQTKNDLEGKKIGVQLGTLQENTAKAIKNAQVQ
                     SNKDLNIAVLALKNNKIDAIVADQDTAKGFLAENPELVSFYQETDGGEGFSFAFDKNK
                     QKDIIEIFNKGIDEAKTDGFYDTLIKKYELE"
     gene            complement(775..1413)
                     /locus_tag="ACJFD7_000775"
     CDS             complement(775..1413)
                     /locus_tag="ACJFD7_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HGG0859613.1"
                     /translation="MKLVLFDLDDTLIQGDSAKLWLKFCVEKGFLPQEYLEKIVFYQK
                     QYQEKKLDMDEFMTFFLQSVKGKNEDRISSLVDEFIKIYIKPYEKAKELIIKYQDQRC
                     IIISATAEFLVRKIASFLGVRESIAIKCERVGDKFSGKAYGIYSFKEGKVLRLKEYLG
                     KDYEKWMKDSYFFSDSINDLPLLESVSKAFVCNGDEKILKIAKERKYEILTF"
     gene            complement(1410..2399)
                     /locus_tag="ACJFD7_000776"
     CDS             complement(1410..2399)
                     /locus_tag="ACJFD7_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0859614.1"
                     /translation="MAYLKIKNFKKAYGDKIIFEDINFSAKKGEFITLLGPSGCGKST
                     LLRCIAGLSQINGGKISLNDKDLTKLSPQKRNIGMVFQNYALFPNLNVFENVAFGLKI
                     KKMDKKDIEKRVKKMLKLVELEEYAKTYPHKLSGGQMQRVALARSLVTKPDLLLLDEP
                     LSALDAKIRKHLRVQIKEIQKELELTTIFVTHDQEEALELSDRIILMNEGKIIQNSNA
                     NNLYLLPESHFVASFIGNYNILSPKELDSLGLKHDFKKDIALRPETIEISNEGLEAKI
                     KEKSLLGNIIRYRVRVQEIEFKVDTLNFSTHSTYEAGDKIALKFNLSLAKELK"
     gene            complement(2403..3182)
                     /locus_tag="ACJFD7_000777"
     CDS             complement(2403..3182)
                     /locus_tag="ACJFD7_000777"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0859615.1"
                     /translation="MNENLSLKAKIYHYAVLFLVFLFLALPLMATFLYSISTSWGVSV
                     LPDDLTLKWYQELFHDERFLLALWHSLLVCVGSILLSVILVFPLVFVLNYYFLKLKAF
                     VNILIIMPFAVPPIVSCVGLLQLYADNIGGTAWILIFTYFTIALPFIYRALDNAISNV
                     NLNELIASNAMLGGSLMGAIFKLILPNLRNGILVAVFLSFSFLIGEFLYANILVGSAY
                     ETLQVYLYNIKNQSGHYSSALVIVYFVLIFITTFIASLIKE"
     gene            complement(3183..4022)
                     /locus_tag="ACJFD7_000778"
     CDS             complement(3183..4022)
                     /locus_tag="ACJFD7_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0859616.1"
                     /translation="MKEKFLAFLSILPFFIVFTFFMIAPLIWIVFNAFYVEEDEIYSL
                     ANFIHIFESKFYLQSIINSLQISFISSIFGLLIGLLASYSLFILAPSKICKFLFSLNT
                     MISNFSGVPLAFAFIIVLGSNGVVNVFLKNLGIEPFVSVYANFGVNIVYVYFQIPLAI
                     LLLLPAFKSLENSHLNACKMLGGGNFLYWLKIALPLLAPALFGVFVILFANAFGAYAT
                     IYALSSGNFNVAPVRIAALIAGDINLDPYMASALSIIITIIMLVVTFIANFLSKKYNF
                     KVL"
     gene            complement(4019..4828)
                     /locus_tag="ACJFD7_000779"
     CDS             complement(4019..4828)
                     /locus_tag="ACJFD7_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HGG0859617.1"
                     /translation="MMSKVILVVLDGLNCKSASINMGYLNALCKENLGKFYSLECELP
                     SMSRPLYECLLTGVKPVLSGIINNKLSFSKQTSIFDLCKEQGLKAGGAAYHWVFELYN
                     KKEFIPSLHRHIEDENLTLPYGHFYYEDDYLDSHLFADGEHLRNKYNLDFTLIHSMNI
                     DDTGHKFGSHSIEYANKTKKVDNLISEYLPTWLEQGINVIITSDHGMTEGKSHGGLSE
                     DEILVPFFTFGSAFSYENAKIKQDEICGSVCEILGLKHDKRYNDEILKARK"
     gene            complement(4825..6150)
                     /locus_tag="ACJFD7_000780"
     CDS             complement(4825..6150)
                     /locus_tag="ACJFD7_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HGG0859618.1"
                     /translation="MKKVILTSAMLCSVLFGVQEYEANLAGHIIIDSKSTVKPPKDAP
                     DFFKTYGKFANITREEKIGTFKSKGNRETDFYLPFKNQPIQGHSGIKYIPKKDVFWVI
                     SDNGLGKKYNSYDAMLYAHEFKFDFKNSKYELLKTVFFKDSDKKYPYPITTETTKERY
                     LSGADFDTESIQVINDEFYIGDEFGPYLLHFDKNGNLKEFFDVYVEGKKLISPDNPSL
                     KFSDKPDGENEKFNIKRSKGFEAMASSKDGSKLYLLLEGSIYNNNAYENEKGKEYLRI
                     IEFDVKNKKFTGKTYKYFLEDKSHSIGDFNMIDDKYGIIIERDQKEGTKDKACKEGED
                     TKHCFNNVAQFKRIYKVKLDDKTHEAQKISYIDLLNIKDRNKISKKPLVNDKFVFPFE
                     TIEGVDIVDDSHIVVENDNNFPYSSSREPNKTDDNEFILLEVKDFLKSK"
     gene            complement(6161..7207)
                     /locus_tag="ACJFD7_000781"
     CDS             complement(6161..7207)
                     /locus_tag="ACJFD7_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HGG0859619.1"
                     /translation="MSKKFFLSLGLVALLFSNSQAIDENLIKAAQAEGRVNSLAMPDT
                     WANWKDTWADLKNLYGIEHSDTDMSSAQEIAKFKAEKKNASGDIGDVGASFGEIAVKQ
                     GVAQPFKTSYWDQIPTWAKDKDGNWLLAYTGTIAFIVNKDVVKDIPKTWQDLLKGNYK
                     ITVGDVSVAAQAVSAVLAANYALGGDEKDLSPALAFFNTLAKQGRLVNNDVSIANLEK
                     GEVEVGLVWDFNGLGYRDKVGKDRYEVLIPADGSVISGYTTIINKYAKHPNAAKLARE
                     FILSDKGQINLAKGYARPIRIDHITLPDDIKAKLLPSEQYKNARAIKDQKAWEKSAKE
                     LPQLWQEKVIVDMK"
     gene            7324..8307
                     /gene="corA"
                     /locus_tag="ACJFD7_000782"
     CDS             7324..8307
                     /gene="corA"
                     /locus_tag="ACJFD7_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015087 - cobalt ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006824 - cobalt ion transport [Evidence
                     IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HGG0859620.1"
                     /translation="MLYIYIKTQNALVQRINFNLDSQELPQNILWIDLLHPSAAEIAF
                     ISSEFNLEFPTKEEREEIELSAKYWEDNATITINAHFLVRDLKSDEEDRNLIKLRTEI
                     VTFATAKNILFTIRYNEFSTFEEIQARILASPKNFEDGFDIIDKMFEVRVEKDADLLE
                     WIDKEARRLRTSVLEKKDEYSYDEMLKDISSLQELNMRVRDSLFDKRRAMTSLLKSDK
                     IDKDIKQNLTIVLKDLNSLVEFSVSQLNILDNIQTILASQINIEQNKIIKIFTVATVA
                     MMPPTLIGTVYGMNFKFMPELELHYAYPIVLGVMVISIILPLVVFKKKGWL"
     gene            8328..8870
                     /gene="mog"
                     /locus_tag="ACJFD7_000783"
     CDS             8328..8870
                     /gene="mog"
                     /locus_tag="ACJFD7_000783"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HGG0859621.1"
                     /translation="MDTINIGILTLSDRASSGIYEDKATVEIERVLNSYIKNDIIYHK
                     ELIPDDYDLIIKKLLYLADEKKCDLIVTSGGTGPALRDVTPEATEAVCDKMMPGFGEL
                     MRLESLKYVPTAILSRQSAGIRNKSFIINLPGNPKAIKECLEPVFPAIPYCIDLIEGA
                     YIEANDEVIKVFRPKKKCQN"
     gene            complement(8867..9052)
                     /locus_tag="ACJFD7_000784"
     CDS             complement(8867..9052)
                     /locus_tag="ACJFD7_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein"
                     /protein_id="HGG0859622.1"
                     /translation="MFFKKKISQKQKEKPKIPINDVILDDRLCKFKNKVQKISKDEAS
                     ASLLAKQLSRLVRANKF"
     gene            9178..10365
                     /locus_tag="ACJFD7_000785"
     CDS             9178..10365
                     /locus_tag="ACJFD7_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HGG0859623.1"
                     /translation="MTLIAILCLYTALLSWISYAQIRFLEREKDKQAQILSEKDYQNA
                     ADIAIENEKFKLFSNFYNLIINIAWIGFGFLYLKELLISSNTRFENTLFLLSFLIITS
                     ILNLPLSIYESFIKDKAHGFSNMTIKLFIKDTVKSLILTLIFGFLILYALLFCYDFFG
                     TFWWIAAFIFAFCIIVIINLIYPTLIAPIFNKMKKLDDENLLKKISSLMKQCGFSANG
                     VYVIDASKRDKRLNAYFGGLFKSKRVVLFDTLLKALNERELLAVLGHELGHFVHKDII
                     KALFNGAITMFLLFFVFANLPEFVYLESHLEGVNGGVFALLFILANIFSFLISPMLNA
                     LSRKNEFAADQHGAKVTSKEDMKNALIALARENKAFIKTSKIYAFFYLSHPSISDRIK
                     ALS"
     gene            10362..11177
                     /locus_tag="ACJFD7_000786"
     CDS             10362..11177
                     /locus_tag="ACJFD7_000786"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HemK/PrmC family methyltransferase"
                     /protein_id="HGG0859624.1"
                     /translation="MTIKNALMEAKSSLKGYENEAVFILCEYLKKDKAWLFLNQDIQI
                     DHEPYFKLIRRFKSGEPFEYIFEKVDFWGLEFNIKKGVLIPRYDSEILLFQILNLCKK
                     NTFNGILEIGFGSGILSIILAKELGLKITACDINPKALELALENAKLHKVDHLIDFKL
                     CNFKQIKENYDFIFSNPPYIKNSYPIDIWVQKEPKEALFGGEKGYEILEEIIHFSLDK
                     KVKFLACEFGYDQKEILEKILYQNNFIVDFFKDEQGYNRAFVAKFTNMRYDKK"
     gene            11190..11660
                     /locus_tag="ACJFD7_000787"
     CDS             11190..11660
                     /locus_tag="ACJFD7_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HGG0859625.1"
                     /translation="MKAINLFLLASIIGVELILGIVVAPTIFFPQNLIGEGVLSHFQS
                     GLMMTQIFIKMGYLLVFVSVVNFLYEIYSLIKDEMKFQIKLSKFMLSLLILILSLIFV
                     FYFTNTIIELQNLGENATKTQEFISIHNASEVVIKIILIMQVFLYFLSFKIAKK"
     gene            11699..12448
                     /gene="flaC"
                     /locus_tag="ACJFD7_000788"
     CDS             11699..12448
                     /gene="flaC"
                     /locus_tag="ACJFD7_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin C"
                     /protein_id="HGG0859626.1"
                     /translation="MMISDATMMQQNYYLNNAQKASDKALENIAAVRAISGVDSANLA
                     IADSLRSQSSTIDQGVANAYDAIGVLQIADASLTNISQSADRLNELSVKMNNAALNDS
                     QKGILRTEATRIQESINDSFNNATYNGKNVFQTMNFVVGSGTETTNLNPLATGGLSID
                     NQDSITNFMDQLGSLRSEIGSGINAITSNINASVQNSINSKAAENNLLNNDMAKNVND
                     FNVNYLKENAAAFVAAQSNIQLQSKIANLLQ"
     gene            12484..13116
                     /locus_tag="ACJFD7_000789"
     CDS             12484..13116
                     /locus_tag="ACJFD7_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HGG0859627.1"
                     /translation="MTLEQILEKTKNIRLVAASKYVDASIIEKLFDQGIVEFGENQVQ
                     ALTQKKENLDEKKLDIKWHFIGTLQSNKINLLIKRKPILWHSCNGIKIAKAMDKRLDY
                     KLNTLLEINSANENSKSGLDPNQAVEEYLQIQEECSNLNLCGVMSIGSHSQDKESIIK
                     SFETTFKIYEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILFKNLK"
     gene            complement(13128..16730)
                     /gene="dnaE"
                     /locus_tag="ACJFD7_000790"
     CDS             complement(13128..16730)
                     /gene="dnaE"
                     /locus_tag="ACJFD7_000790"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HGG0859628.1"
                     /translation="MSQFTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGN
                     MFGAIDFYQTMKAQGLKPIIGMEAYLHNHDELDDKSSRQRFHLCLYAKNEIGYQNLMY
                     LSSQSYIKGLYYYPRINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGY
                     EAAKEAALWYKKVFKDDFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTF
                     KERAAAHEVFMCIAMGKKLNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIA
                     QKCNLELNLGNPTPPNFKFTREYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEER
                     LKFIDESKHEEYKQRLEVEINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAG
                     SLVSYCLRITDLDPIPYSLLFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGAD
                     KVAQVITFGKLLAKGVIRDVARVCDMSIQDADELAKLVPEELKITLDAAYEKEPKIKE
                     FIDRHPKGLEVWEYARALEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVT
                     QYSKDHLEDVDLIKFDFLGLKTLTVINNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQ
                     SGNTLGIFQIESGGMQSLNARLKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLK
                     SIEYPFDSLEKVLEPTYGVIVYQEQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKK
                     LKTDFADGAEKQGYDRAKAEDLWELIVKFAGYGFNKSHSAAYALITFQTAYLKTYYPS
                     EFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSINKAIREFSALEQDGKDAIIYGL
                     GAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFT
                     RKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSGVQVNFTPKNEEFEVMEKLGY
                     EKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGEILSIGKIEDFKSMMSKNN
                     KRYGRIEILDYYSSFDATVFESNVEEIENIIKDENLKNNAYGFVLGFKAEGGEKPSFF
                     LKAIKDLQSLEDGEIKAIKKFGAKKDFKNKEENHFTAEPKEFEKNIIELDLTRLNREL
                     IYEIHEIARNAHNPNEKNNKKLVLKVISAGSCLLYHTDFIISDSIVEEISNKYA"
     gene            16923..17165
                     /locus_tag="ACJFD7_000791"
     CDS             16923..17165
                     /locus_tag="ACJFD7_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_255349556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:16953..16955,aa:Sec)
                     /transl_table=11
                     /product="SelT/SelW/SelH family (seleno)protein"
                     /protein_id="HGG0859629.1"
                     /translation="MKVKIAYCNLUNYRPQAARVAEELQSDFKDVEVEFEIGGRGDFI
                     VEVDGKVIFSKTQLINCESERFPYQNEINQLIKNRV"
     gene            complement(17178..17507)
                     /locus_tag="ACJFD7_000792"
     CDS             complement(17178..17507)
                     /locus_tag="ACJFD7_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC/Spx/MgsR family protein"
                     /protein_id="HGG0859630.1"
                     /translation="MKLYGIKNCNSVKKAMDALTQKGIVFDFMDIKKINQDILYTWLK
                     QKSFEELINTAGLTSKKLGLNKEKVKNLNEKELEKIVLENPSCIKRPIIEYEQNIYIG
                     KEYEKML"
     gene            complement(17504..18844)
                     /locus_tag="ACJFD7_000793"
     CDS             complement(17504..18844)
                     /locus_tag="ACJFD7_000793"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II 3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HGG0859631.1"
                     /translation="MWAKNSWKNYPIKQQPIYPDQEEMNRVLARLEKLPPLVFAGEVR
                     NLQKSLARVCKKEAFLLQGGDCAESFENFGAVNIRDMFKILLQMAIVLTFAGGCPVIK
                     IGRIAGQFAKPRSSDFEELDGISLPSYRGDIINGFEFSEQARIPDPHRMLEAYYQSAI
                     TLNLLRGFAKGGLADLHEVHRWNLGFLKKSELHKQYTDISEKISQALAFMEACGINTS
                     NTPSLREVSVYTSHEALLLPYEEALTRVDSLSGEIYDCSAHMLWIGERTRALDEAHVH
                     FLSGVKNPLGVKIGPSASADDIIALANVLNPNNEEGRLNIIIRMGADKIINNLPKIFS
                     KLKSEGLNLVYSIDPMHGNTVKAGNFKTREFDKIMQEVRSFFEIAISEGVYPGGVHLE
                     MTGKDVTECTGGASNVTAQSLEDRYETQCDPRLNADQALELAFLIADLVKKARK"
     gene            complement(18868..19281)
                     /gene="uraH"
                     /locus_tag="ACJFD7_000794"
     CDS             complement(18868..19281)
                     /gene="uraH"
                     /locus_tag="ACJFD7_000794"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033971 - hydroxyisourate hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006144 - purine nucleobase metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HGG0859632.1"
                     /translation="MFSIKKTLLILASVPMFLSATEYQLSTHVLDITSGQPAPKVKVE
                     LYKLEANQQWKKVSEEFTEENGRIGDLLPYEKAENRAFGIYKLKFFTKDYYTSHKINT
                     FYPFVEVSFELSKDQKHYHVPITLSPFGYSTYRGS"
BASE COUNT         6786 a         3276 c         2605 g         6639 t
ORIGIN      
        1 aaaaatatta agcattgctc tagttgcttt agttggttta tttttaggtg cttgtagtga
       61 ttctaaaaat aaagaatcaa atgcaagtgt agaattaaag gttggaactg ctccaaatta
      121 taaacctttt aattataaag aaaactcaaa acttacaggt tttgatactg atttggttga
      181 agagattgcc aaaaaaaatg gtattaaaat tgtttgggtt gaaaccaatt tcgatggatt
      241 gattcctgct ttaaaagctg gcaaaatcga tatgattgcc tcagctatga gcgcaactga
      301 tgaaagaaga caaagtgttg attttaccaa accttactat atgagtaaaa atctttatct
      361 taagctaaaa aacaacgact ctcttcaaac aaaaaatgat ttagaaggta aaaaaatagg
      421 agttcaatta ggaactttac aagaaaatac tgcaaaagct atcaaaaatg cacaagtaca
      481 aagcaataaa gatttaaaca tagctgtttt agcactaaaa aacaacaaaa ttgatgctat
      541 tgtagctgat caagatactg ctaaaggttt tttagctgaa aatccagaat tggtaagttt
      601 ctaccaagaa acagatggag gagaaggctt tagttttgct tttgataaaa ataaacaaaa
      661 agatattatt gaaatattta acaaaggcat agatgaagca aaaactgatg gattttatga
      721 tactttaatt aaaaaatatg aattagaata agcgtgaatt ttcacgctta tagcttaaaa
      781 agttaaaatt tcatattttc tctcttttgc aatttttaaa attttttcat cgccattaca
      841 tacaaaggct ttgctaacag actctagtaa aggtaaatca ttgatagaat cactaaaaaa
      901 ataagaatct ttcatccatt tttcataatc tttacccaaa tattccttaa gtcttaaaac
      961 cttgccttcc ttaaagctat aaatcccata agcttttcca ctaaatttat cacccacacg
     1021 ctcgcatttt atggctatgc tttctctcac tcccaaaaaa gaggcgattt ttctaactaa
     1081 aaattcagcc gtagctgaaa ttataataca cctttgatct tgatatttga ttataagttc
     1141 tttagctttt tcataaggtt ttatataaat ttttataaat tcatctacta aagatgaaat
     1201 tctatcttca tttttaccct taacactttg aagaaaaaaa gtcataaatt catccatatc
     1261 aagctttttt tcttgatatt gtttttgata aaaaacgatt ttttctaaat attcttgagg
     1321 taaaaaacct ttttcaacac aaaatttaag ccaaagttta gcactatcgc cttgtattaa
     1381 agtatcatct aaatcaaata aaacaagctt cattttaact cttttgctaa agaaagattg
     1441 aattttaaag cgattttatc acctgcttca taagtactat gagtgctaaa atttaaagta
     1501 tctaccttaa attcaatttc ttgcactcta accctatagc gtatgatatt acctagcaat
     1561 gatttttctt tgatcttagc ctctaagcct tcgttagaaa tttctatggt ttcaggacgc
     1621 aaggctatat cttttttaaa atcgtgtttt aaacccaagc tatcaagctc tttagggctt
     1681 aaaatattgt aatttcctat aaagctagcc acaaaatgag attctggcaa aagataaaga
     1741 ttgtttgcgt tggaattttg tatgatttta ccctcattca ttaaaataat cctatcggat
     1801 aactctaaag cttcttcttg atcgtgcgtt acaaaaatag tggtgagttc aagttctttt
     1861 tgaatttctt taatttgcac ccttaaatgc ttacgaattt tagcatcaag tgccgataaa
     1921 ggctcatcaa gtaaaagtaa atcaggttta gtcaccaaag atcttgctaa agccactctt
     1981 tgcatttgtc cgcctgaaag cttatgtgga taagttttag cgtattcttc aagctcgacg
     2041 agttttaaca tttttttcac tcttttttct atgtcctttt tatccatttt tttgatcttt
     2101 aaaccaaaag ctacattttc aaaaacgtta agatttggaa aaagagcgta attttgaaaa
     2161 accataccta tatttctttt ttgaggactt aatttggtaa gatctttatc atttaaagaa
     2221 atttttcctc cattaatttg gctaagccct gctatacacc ttaaaagagt ggattttcca
     2281 cagccacttg gacctaaaag ggttataaac tcaccctttt tagcactaaa attaatatct
     2341 tcaaaaataa ttttatcccc ataagctttt ttaaaatttt taatctttaa ataagccatt
     2401 tttcactcct taatcaaact agctataaaa gttgttataa aaattaatac aaaataaact
     2461 attaccaaag cactagaata atgcccactt tgatttttaa tattataaag ataaacttgt
     2521 aaagtctcat aagcacttcc tacaagaata tttgcgtata aaaattcacc tattaaaaaa
     2581 gaaaaactta aaaaaactgc caccaaaatt ccatttctta aattaggcaa gataagctta
     2641 aaaatcgctc ccattaaaga acctccaagc atagcattag atgcgatgag ttcatttaaa
     2701 ttgacattag atatagcatt atctaaagcc ctatatataa aaggtaaagc tatagtaaaa
     2761 taagtaaaaa tgagtatcca agctgtgcct cctatattgt cagcataaag ttgcaaaagc
     2821 cccacacagc taactatagg aggtacggca aaaggcatga taataagtat atttacaaag
     2881 gcttttaatt ttaaaaaata ataatttagc acaaaaacca aagggaaaac aagaatcaca
     2941 gaaagtaaaa tactgcccac acaaacaagc aaagaatgcc aaagagcaag taaaaatctt
     3001 tcatcatgaa aaagttcctg ataccattta agcgtaagat catcaggcaa aacacttaca
     3061 ccccaagaag tggaaataga atataaaaaa gtagccatta aaggcaaagc taaaaataaa
     3121 aaaaccaaaa acaaaactgc ataatgataa attttagctt ttaaactcaa attttcattc
     3181 atttaaagca ccttaaaatt atatttttta gaaaggaaat tggctataaa ggtaacaaca
     3241 agcatgatta tagttataat gatgcttaaa gcactagcca tataaggatc aagattgata
     3301 tcgcctgcga ttaaagcagc gattcttaca ggagcgacat taaaatttcc cgaacttaaa
     3361 gcataaatag tcgcataagc tccaaaagca ttggcaaata aaatcacaaa aacaccaaac
     3421 aaagcaggag cgagcaaagg caaagctatt tttaaccaat ataaaaaatt gcctccacct
     3481 aacattttac aagcatttaa atgtgaattt tcaagacttt taaaagctgg aagcaaaagc
     3541 aagattgcca aaggaatttg aaaatacaca taaacaatat ttaccccgaa attagcataa
     3601 acactaacaa aaggctctat gcctaaattt ttcaaaaaca cattaactac accattgctt
     3661 ccaagaacta taatgaaagc aaaagctaaa ggaactcctg aaaaattact tatcatggta
     3721 tttaaagaaa aaagaaattt acatattttt gatggagcta aaataaataa agaatagctc
     3781 gccaaaagcc ctattaaaag tccaaaaata ctagaaataa aactgatttg caaagaattt
     3841 ataatacttt gtagatagaa tttggactca aaaatatgta taaaattagc taaagaataa
     3901 atttcatcct cttctacata aaaagcatta aaaacaatcc aaatcaaagg cgctatcata
     3961 aaaaaagtaa aaactataaa aaaaggtaaa atacttaaaa aggctagaaa tttttctttc
     4021 attttctggc ctttaaaatt tcatcattat atctcttatc gtgtttaagt cctaaaattt
     4081 cacagacact gccacaaatt tcatcctgtt ttatcttggc attttcatac gaaaaagcac
     4141 taccaaaagt gaaaaaaggc actaaaattt catcttcgct taagcctcca tgacttttac
     4201 cctccgtcat accatgatcg cttgtgatga ttacattaat accttgttct aaccaagtag
     4261 gcaaatactc agaaatcaaa ttatcaactt ttttggtttt attagcatac tcgatagagt
     4321 gtgagccaaa tttatgtcct gtatcatcta tattcataga atgtataaga gtaaaatcta
     4381 gattatattt gtttcttaaa tgctccccat ctgcaaataa atgagaatct agataatcat
     4441 cttcatagta aaaatgtcca taaggcaaag ttaaattttc atcttctata tggcgatgta
     4501 aagaaggaat aaattctttt ttattataaa gctcaaaaac ccaatgataa gctgcacctc
     4561 cagcttttaa gccttgttct ttgcaaaggt caaaaatgct tgtttgtttt gaaaaactca
     4621 atttattatt aattatccca cttaaaacag gctttacgcc tgttaataag cactcgtata
     4681 aaggacgaga catactagga agttcgcatt ctaaagaata aaatttgcct aaattctctt
     4741 tgcaaagcgc atttaaatat cccatattta tactagcgct tttacaattt aagccatcaa
     4801 gcacaactaa aataactttg gacatcattt actctttaaa aaatctttta cttcaagcaa
     4861 aataaactca ttatcatcag tcttattagg ttctctgctt gaagaataag gaaagttatt
     4921 gtcattttct acgactatat gagagtcatc tactatatcc acaccttcta tggtttcaaa
     4981 aggaaaaaca aatttatcat ttaccaaagg ctttttagaa attttatttc tatccttaat
     5041 atttaaaaga tcaatataag aaattttttg agcttcatgg gttttatcat ctaatttaac
     5101 cttataaatt cttttaaatt gggctacatt attaaaacaa tgcttagtat cttcaccttc
     5161 tttgcaagcc ttatctttag tgccttcttt ttgatctctt tctatgatga tgccgtattt
     5221 atcatctatc atattaaaat cacctatgga atggctttta tcttctaaga aatatttata
     5281 agtttttccg gtgaattttt tattttttac atcaaattct atgattctta gatattcttt
     5341 acctttttca ttctcataag cgttgttatt ataaatgctt ccttctaaaa gcaaataaag
     5401 tttagaacca tctttagaac ttgccatagc ttcaaagcct ttagaacgct tgatattaaa
     5461 tttctcattt tctccatcag gcttatcgct aaattttaaa cttggattat caggagaaat
     5521 aagtttttta ccctccacat acacatcaaa aaattctttt aaattcccat tcttatcaaa
     5581 atgaagcaaa taaggaccaa attcatcacc tatataaaat tcatcattga taacctgtat
     5641 actctcagta tcaaaatcag ccccacttaa atacctttct ttggttgttt cggtggttat
     5701 aggataaggg tattttttat cactatcttt aaaaaaaact gtttttaaaa gttcgtattt
     5761 tgagttttta aaatcaaatt taaactcgtg agcataaagc atagcatcat aagaattata
     5821 ctttttgccc aagccattat cgctaatcac ccaaaaaaca tctttttttg gaatatattt
     5881 tatcccacta tgtccttgta taggttgatt tttaaaaggt aaataaaaat ctgtttccct
     5941 gtttccctta gatttaaaag ttccaatttt ttcttctcta gtgatatttg caaatttccc
     6001 ataagtttta aaaaaatcag gagcatcctt aggaggtttt actgtacttt tagaatctat
     6061 gataatatgc cctgctaaat tagcctcata ctcttgaact ccaaataaaa cactgcaaag
     6121 catagcactt gttaaaataa cctttttcat ccaatctcct ttatttcata tccactataa
     6181 ctttttcttg ccaaagttgt ggcaattctt tagcgctttt ttcccaagct ttttgatctt
     6241 tgatcgctct tgcatttttg tattgctcac ttggtaaaag tttagctttt atatcatctg
     6301 gcaaggtaat atgatcaatt cttattggcc ttgcataacc ttttgctaga ttgatttgtc
     6361 ctttatcaga aagtataaac tcacgagcta atttagccgc atttggatgt tttgcgtatt
     6421 tattgataat agttgtataa cccgaaataa cactaccatc agcagggatt aaaacttcat
     6481 aacgatcttt gcccacttta tctctatagc ctaaaccatt aaaatcccaa actaaaccca
     6541 cttcaacttc acctttttca agattggcta tacttacatc attatttaca agtcttcctt
     6601 gtttggctaa agtattaaaa aaagctaaag caggacttaa atctttttca tccccaccta
     6661 aggcataatt agctgccaaa actgcactca cagcttgagc tgctacactt acatcgccca
     6721 cggtaatttt ataatttccc ttaagcaaat cttgccaagt tttaggtata tcttttacta
     6781 catctttatt gactataaaa gctatggttc ctgtataagc taaaagccaa tttccatctt
     6841 tatctttagc ccaagttgga atttgatccc agtagcttgt cttaaaaggc tgagctactc
     6901 cttgtttaac cgctatctct ccaaaagaag ctcctacatc acctatatca ccgcttgcat
     6961 ttttcttttc ggctttaaat ttagcaattt cttgagctga actcatatct gtatcactat
     7021 gttctatgcc ataaagattt ttaagatctg cccaagtatc cttccaattt gcccaagtat
     7081 caggcatagc taaagaattt accctacctt ctgcttgcgc agctttaatc aaattctcat
     7141 caatagcttg tgaatttgaa aacaataaag caacaagacc taaacttaag aaaaatttct
     7201 tactcatttt tttcctttca aaaaatattt tggaaattta atgagtttta gaaacatttt
     7261 agaaacaagt taatttttaa gcaaacaagg ttataatttt aaagtcataa acaaggagcg
     7321 atcatgcttt atatttatat caaaactcaa aatgctttag ttcaaagaat caattttaat
     7381 ctcgatagtc aagaactacc acaaaatatt ttatggattg atttacttca tccaagtgca
     7441 gcagaaattg cttttatatc aagtgaattt aatcttgagt ttcctacaaa agaagaaagg
     7501 gaagaaatag agcttagcgc aaaatattgg gaagataatg cgacaataac catcaatgct
     7561 cattttttag taagagatct taaaagcgat gaagaagata ggaatttaat caagcttcgc
     7621 acagaaattg ttacttttgc tacagctaaa aatatcttat ttactataag atataacgaa
     7681 tttagcactt ttgaagaaat tcaagcaagg attttagcta gtccgaagaa ttttgaagat
     7741 ggttttgata ttattgataa aatgtttgaa gtgcgcgttg aaaaagatgc ggatttacta
     7801 gaatggatag ataaagaagc aagacgctta agaacaagtg ttttagaaaa aaaagatgaa
     7861 tatagttatg atgaaatgct aaaggatatt tcaagtttgc aagagcttaa tatgcgcgta
     7921 agagattctt tatttgataa gcgtcgcgct atgacttctt tgctaaaaag cgataaaatc
     7981 gataaagaca taaaacaaaa tctcactata gttttaaaag acttaaattc tttggttgaa
     8041 tttagcgttt cgcaacttaa tatcttagat aatatccaaa ccattttagc cagccaaatc
     8101 aacatagaac aaaacaaaat cattaaaatt tttaccgttg caactgttgc catgatgcca
     8161 cctactttaa taggaactgt ttatggtatg aattttaaat tcatgcccga acttgaactt
     8221 cactatgctt atcccatagt gcttggcgtg atggtaattt ctatcatttt acctttggtt
     8281 gttttcaaga aaaaaggatg gttataaaaa tttattaagg agaaataatg gatacaataa
     8341 acataggaat tttaacccta agcgatagag caagtagtgg tatatacgaa gataaagcca
     8401 ctgttgaaat tgaaagagtg ttaaattcat atataaaaaa tgatattatt tatcataaag
     8461 aattaatccc tgatgattat gatttgatca ttaaaaaatt actttatcta gcagatgaaa
     8521 aaaaatgcga tttgattgtt acaagcggag gtacaggtcc agcacttcgt gatgtaaccc
     8581 cagaagccac ggaagccgtg tgtgataaaa tgatgccagg ttttggagaa cttatgcgct
     8641 tagaaagttt aaaatatgtc ccaacagcta tactttcaag acagagtgca ggaattcgca
     8701 ataaatcttt tatcattaat ttaccaggta atcctaaggc tataaaagaa tgcctagagc
     8761 ctgtttttcc ggctatacct tactgtatcg atttgataga aggcgcttat atagaagcaa
     8821 atgatgaagt tattaaggtt tttcgcccta agaaaaaatg tcaaaattaa aatttattag
     8881 ccctaacaag tctgcttaac tgtttagcaa gcagacttgc cgaagcttca tctttgctta
     8941 tcttttgtac tttgttttta aacttacaaa gcctgtcatc taaaatcaca tcattgattg
     9001 gaattttagg cttttctttt tgcttttgtg aaatcttttt cttaaaaaac attctttaat
     9061 ccttttttat aaatatacac caacttagtt gaaaagaata ttattttaga ttttaaacta
     9121 ttaactttat ttcattattt taagttagaa tttgcaaaaa ccaatcaagg aaaaataatg
     9181 actttaattg caattttatg tctttacaca gcacttttat cttggatttc ctatgctcaa
     9241 attcgtttct tagaaagaga aaaagacaaa caagctcaaa ttttaagcga aaaagactat
     9301 caaaatgcag cagatattgc catcgaaaat gaaaaattta aactattttc caatttttat
     9361 aatttaatca tcaatattgc atggataggt tttggatttt tatatcttaa agaattgctt
     9421 atctcaagca acactcgttt tgaaaatact ttatttttat tatctttttt aataatcaca
     9481 agtattttaa atctaccttt aagtatttat gaaagtttta tcaaagataa agcccatggt
     9541 ttttcaaata tgactataaa actttttatc aaagacactg taaaaagtct tattttaact
     9601 ttaatatttg gatttttaat cctttatgct ttgctttttt gctatgattt ttttggaact
     9661 ttttggtgga ttgcggcctt tatttttgcc ttttgtatta tagtgattat aaatctcatc
     9721 taccctacct taatagcacc tatttttaat aaaatgaaaa aactagacga tgaaaatttg
     9781 ctgaaaaaaa tcagctcttt gatgaaacaa tgtgggttta gtgcaaatgg ggtttatgtt
     9841 attgatgcaa gcaaaagaga taagcgttta aatgcttatt ttggcggact ttttaaaagc
     9901 aaaagagtgg tgctttttga tacattatta aaagccttaa atgaaagaga acttttagct
     9961 gttttaggac acgagcttgg acattttgtt cataaggata ttatcaaagc tttatttaac
    10021 ggcgctataa ctatgttttt actttttttt gtttttgcaa atttacctga atttgtttac
    10081 ttagaaagtc atctagaagg agtaaatggt ggcgtgtttg ctcttttgtt tatcttggcg
    10141 aatattttta gctttttaat ctctcctatg cttaatgcct taagtagaaa aaatgaattt
    10201 gcggctgatc aacacggagc taaagttaca agcaaagaag atatgaaaaa tgcattgata
    10261 gccctagcaa gagaaaataa agcttttatc aaaacaagta aaatatatgc atttttttat
    10321 ctcagccatc caagtattag tgatagaatc aaggctcttt cttgactata aaaaatgctc
    10381 ttatggaagc taaatctagc ttaaaaggtt atgaaaatga agcagtattt atactctgtg
    10441 aatatctaaa aaaagataaa gcttggttat ttttaaacca agatatacaa atagatcatg
    10501 aaccttattt taagcttata aggcgtttta aatctggaga accttttgaa tatatatttg
    10561 aaaaagtgga tttttgggga ttagaattta atataaaaaa aggtgttcta atccctcgct
    10621 acgatagtga aattttactt tttcaaattt taaatttatg caaaaaaaat acttttaatg
    10681 ggattttaga aataggattt ggaagcggaa ttttaagcat tattttagcc aaagaacttg
    10741 ggttaaaaat cacagcctgc gatatcaatc ccaaagcctt agaattagct ttagagaatg
    10801 ccaaattaca caaagtcgat cacttgattg actttaaact ttgtaatttt aagcaaatta
    10861 aagaaaatta tgattttatt ttttcaaatc caccctatat taaaaattca tatcctatag
    10921 atatttgggt gcaaaaagaa cccaaagagg ctttatttgg tggagaaaaa ggatatgaaa
    10981 ttctagaaga aatcatacat ttttcccttg ataaaaaagt taaattttta gcttgcgaat
    11041 ttggctatga tcaaaaagaa attttggaaa aaattttata tcaaaataat ttcattgttg
    11101 attttttcaa agatgaacaa ggttataatc gtgcttttgt agctaaattt acaaatatgc
    11161 gttatgataa aaaataaaag gagaaactct tgaaagctat taatttattt ttacttgcct
    11221 ccatcatagg ggttgaactc atactaggaa tagttgttgc accaacaatt ttttttcctc
    11281 aaaatcttat aggagaagga gtgttgagcc attttcaaag tggcttaatg atgacgcaaa
    11341 tttttattaa aatgggatat ttactggttt ttgtttcagt ggttaatttt ttatatgaaa
    11401 tttattctct tataaaagat gaaatgaaat ttcaaataaa attgtcaaaa tttatgctga
    11461 gtttgcttat tttgatctta agcttaatat ttgtttttta ttttactaat accataattg
    11521 aactccaaaa cttaggcgaa aacgctacaa aaactcaaga atttatcagt atccataatg
    11581 caagtgaagt agtgattaaa atcatcttga taatgcaagt ttttttatat ttcttaagct
    11641 ttaaaatagc aaaaaaatga tagaatatta aataaatcca aaagagaagg agtaggccat
    11701 gatgatctct gatgcaacta tgatgcaaca aaattattat ttaaacaatg cacaaaaagc
    11761 tagtgataaa gctttagaaa atattgcggc tgttcgtgca ataagtggag ttgatagtgc
    11821 caatttagct attgctgatt ctttaagatc tcaatcaagc actatagatc aaggtgtcgc
    11881 aaatgcttat gatgctatag gggttttaca aattgcagat gctagcctta ccaatatctc
    11941 tcaaagcgca gatagactta atgaactttc agtgaaaatg aacaatgctg cacttaatga
    12001 ttctcaaaaa ggaatactaa gaacagaagc aacacgcata caagaatcca tcaatgattc
    12061 ttttaataat gcaacttata atggaaaaaa tgtctttcaa actatgaatt ttgtagtagg
    12121 tagcggaact gaaactacaa atttaaatcc attagcaaca ggtggattaa gcatagataa
    12181 tcaagatagt attacaaatt ttatggatca acttggaagt ttaagaagtg aaataggctc
    12241 aggtatcaat gccattacat caaatattaa tgcaagtgtt caaaacagca tcaactcaaa
    12301 agcagctgaa aataatttac taaataatga catggcaaaa aatgttaatg attttaatgt
    12361 caattatcta aaagaaaatg ctgctgcttt tgttgctgca caatccaaca tacagcttca
    12421 aagcaaaatt gctaatttgt tacaataata taagccctaa ataaggctta tttctttatc
    12481 aaaatgactt tagaacaaat tttagaaaaa accaaaaaca ttcgtcttgt agccgcaagc
    12541 aagtatgtcg atgcaagtat aattgaaaag ctttttgatc aaggtatagt agaatttgga
    12601 gaaaatcaag tccaagctct aacacaaaaa aaagaaaatc ttgatgaaaa aaaactagac
    12661 ataaagtggc attttatagg aacgctacaa agcaacaaaa tcaatctctt aatcaaacga
    12721 aaacctatat tatggcactc ttgcaatggt attaaaatag ctaaagctat ggacaaaaga
    12781 cttgattata aattaaatac tttattagaa atcaatagtg caaatgaaaa tagcaaaagc
    12841 ggtctagatc caaatcaagc tgtagaagaa tatttacaaa tacaagaaga atgctctaat
    12901 ctaaatcttt gtggcgtaat gagcatagga tcacacagcc aagataaaga aagtattata
    12961 aaaagctttg aaactacatt taaaatttat gaaattcttc aaaaacatgg ggctaaaatt
    13021 tgctctatgg ggatgagtaa tgattttgaa attgctataa aatgcggatc caacttggta
    13081 agactcggaa gcattttatt taaaaatctt aagtaaaaca atcttactta agcatattta
    13141 ttagaaattt cctctactat actatcagag ataataaaat ctgtatgata aagcaagcaa
    13201 gatcccgcac taataacttt taaaacaagt tttttattat ttttttcatt aggattatgt
    13261 gcatttctag caatttcatg aatttcatag attaattctc tattcaatct tgtcaaatct
    13321 agctctatga tatttttttc aaattcctta ggttctgcgg taaaatgatt ttcttcttta
    13381 tttttaaaat ctttttttgc tccaaatttt tttatagctt taatctcgcc atcttcaaga
    13441 ctttgcaaat ctttaattgc ttttaaaaaa aagctaggct tctcccctcc ttcagcttta
    13501 aatcccaata caaaaccata ggcattattt tttaaatttt catctttgat gatgttttct
    13561 atttcttcta cattgctttc aaatacagta gcatcaaacg aagaataata atccaaaatt
    13621 tcaattctac cataacgctt attattttta ctcatcatgg atttgaaatc ttcaatttta
    13681 cctatactta aaatttctcc attgtttttt aaactttcaa aatctaaact tttaacataa
    13741 tctatggcat taatttgttc ataaaatcga tctaaaggat ggcctgaaac ataaattcct
    13801 aaaatttctt tttcatatcc taatttttcc atcacttcaa attcttcatt tttgggagta
    13861 aaatttactt gaacacctga agttaattcc tcttcaccaa aaagagaact tgcagcattt
    13921 tttcttactt cagccatttt acgcgatgct tcgctaagat tttccatatt atcaaacaaa
    13981 gcttttctag taaaaccaaa ctcatcaaaa gcccctgcct taataagact ttctaatgtt
    14041 ctacggttta ttttggtggg atctatctta cctaagaaat cattaatatc cttaaattct
    14101 ccatcttgtc ttgcttcaag taaattttca actgcaggaa tacccacact ttttatagcc
    14161 ccaagtccgt atataatagc atccttgcca tcttgctcta aagcactaaa ttcacggatc
    14221 gctttgttaa tcgatggagg taaaagttta atattcattt ttttcatctc atcaatataa
    14281 acagcaattt tatccacatt gttttcttcg cttgttaaaa gcgctgccat aaattcacta
    14341 ggataataag tttttaaata agctgtttga aaagtaatca atgcataagc cgcagagtga
    14401 gatttattaa aaccatatcc tgcaaatttt acgataagct cccataaatc ctcagctttt
    14461 gctctatcat atccttgttt ttctgctcca tctgcaaaat cagttttaag ctttttcatc
    14521 ttctcaggat cttttttacc catagcacga cgcactacat cagcacctcc taaagaaaag
    14581 ccacctataa tttgaacaat ttgcataacc tgttcttgat aaacaataac cccataagta
    14641 ggctctaaaa ccttttctaa actgtcaaaa ggatattcta tactttttaa accatgcttt
    14701 ctgtcgataa aatcatcaag cattcctgat tccatagggc ctggacgata aagcgcaaga
    14761 accgcaatga tatcttcaaa acgctctggt tttaagcgtg catttaagct ttgcataccg
    14821 cctgattcga tttgaaaaat tcccaaagta tttccacttt gtatggtttt ataaactttg
    14881 ctatcattta catctatagt ttcccaaata atgtctttat tgtaacgctt tttaataagc
    14941 ttgatcgcat tattgattac tgttaaggtt ttaagaccta aaaagtcaaa ttttatcaaa
    15001 tccacatctt ctaaatgatc tttagaatac tgcgttacca aatgtctttc atcattttta
    15061 ctttgtctaa aaagcggagt tttcttccat aaactttcat tagaaattac aacacctgct
    15121 gcgtgcatac ccgcattgcg atttaatcct tctaaagctc ttgcatactc ccaaacttca
    15181 agacctttag gatgacgatc gataaattct ttgattttag gttctttttc ataagcagca
    15241 tcaagagtga ttttaagctc ttcaggcaca agtttagcaa gctcatcagc atcttgaata
    15301 ctcatatcac aaactctagc cacatcacga atcacccctt tagccaaaag tttaccaaag
    15361 gtaatcacct gtgcaacctt atccgctcca tatttatcaa tcacataatc aatcacttca
    15421 gcacgtctgt cttgacaaaa atccacatca atatcaggca tgctcacacg ctcaggattt
    15481 aaaaaacgct caaaaagtag actataagga ataggatcta aatccgtaat ccttaaacaa
    15541 taagaaacca aacttcctgc agctgatcct cttccagggc ctactggaat acctttatct
    15601 ttagccactt taataaaatc atgaacaata agcatataac ctgaaaattt catattttta
    15661 atgatgttaa tttctacttc aagtctttgt ttgtattctt catgcttgct ttcatcgata
    15721 aattttaatc tctcttcaag tcccttttta caaagttctt caaaaactat gtcatcatta
    15781 tcaaagctaa attcttttgt ttcttcaggt aagataatat tatgatcttt agcatattct
    15841 cttgtaaatt taaaattcgg tggagtggga ttgccaagat taagctctaa attacatttt
    15901 tgcgcgattt cttgtgtatt ttctatagct tctggaatat ctgcaaaaag ctcactcatt
    15961 tgctcagggc ttttaacata aaattcatgc acactatgac gcattctatc aggatcgtta
    16021 agtttttttc ccatggctat acacataaaa acctcatggg cagccgctct ttctttaaaa
    16081 gtataatgcg tatcatttgt agcaatgatt tttatattta attctttaga aagtctgata
    16141 atatcatcat ctatcattct ttgatcgcct ataccatgac gcatgatttc aaaataaaaa
    16201 tcatctttaa aaactttttt ataccataat gccgcttctt ttgctgcttc atagcctttt
    16261 gcaccaaaac gcacatttct ttcactataa gtatttaagt gccaatttac ttcaccttgc
    16321 aagcaagcag aagagcaaat aagaccttcg ctatgatctt ccaaaagctt tttattgata
    16381 cgcggataat aatacaaacc tttaatataa ctttgagaac ttaaatacat taaattttga
    16441 tatccgatct cattttttgc atacaaacaa aggtgaaaac gctgacgaga acttttatca
    16501 tctaattcat cgtgattatg taaatacgct tccataccaa tgataggttt taaaccttgt
    16561 gctttcattg tttgatagaa atcaattgcc ccaaacatat ttccatgatc tgtcatagcc
    16621 acacttgtag caccctgctc ttttaaagtc aaagctaatt ctttaagctt attggctcca
    16681 tcaagcaaag aatattctgt atgtaaatgc aagtgtgtaa attgactcat tttcttcctt
    16741 tagtttttta aggcttatta taattttgat aaaaattata aatttttctc gctgaatttg
    16801 aaagaaattg accctaaatt tcaacttaaa ttttacaaaa aggcaaaaat tcagccaaaa
    16861 taaactataa taaaatctaa gattttaatc ttaataaaaa gaacttctca aaggatgaaa
    16921 tgatgaaagt aaaaattgct tattgcaatc tttgaaatta tcgcccacaa gctgcaaggg
    16981 ttgcagaaga attacaaagc gatttcaaag atgttgaagt agaatttgaa attggcggca
    17041 gaggtgattt tatcgttgaa gtagacggaa aagttatctt ctctaaaaca caacttatta
    17101 attgcgaaag tgaaagattt ccatatcaaa atgaaattaa tcaattaata aaaaatagag
    17161 tgtaatcaaa cactctatca taacattttc tcatattcct taccaatata tatgttttgc
    17221 tcatactcga taataggacg cttaatacaa cttggatttt ccaatacaat tttttcaagt
    17281 tctttttcat ttaaattttt aactttttct ttgtttaagc caagtttttt agaagttaat
    17341 ccagcagtat tgataagttc ttcaaaagat ttttgtttta accatgtgta taaaatatct
    17401 tgattaatct ttttaatatc cataaaatca aacacaatac ctttttgtgt taaagcatcc
    17461 atagctttct ttacagaatt gcaattttta ataccataaa gtttcatttt ctagcctttt
    17521 ttaccaaatc tgcgattaaa aaagcaagtt ctaatgcttg atccgcatta agtcttggat
    17581 cgcattgagt ctcataacga tcttccaagc tttgagcagt aacattgctt gcaccacctg
    17641 tgcattctgt tacatctttc ccagtcattt caagatgcac tccacctgga taaacccctt
    17701 cgcttattgc aatctcaaaa aaagatctca cttcttgcat aattttatca aactcacgtg
    17761 ttttaaaatt gcctgctttt accgtatttc catgcatagg atctatgcta tatactaaat
    17821 ttaaaccttc acttttaagt ttagagaaaa tttttggcaa attattgata attttatctg
    17881 cacccatgcg gataataata tttaatcttc cttcttcatt atttggattt aaaacatttg
    17941 ctaaagctat gatatcatca gcacttgcac taggtcctat tttaacccct aaaggatttt
    18001 ttactccact taaaaaatgc acatgagctt catcaagcgc ccttgttctt tcacctatcc
    18061 aaagcatgtg agctgaacaa tcgtaaattt ctccacttaa actatccact ctagttaaag
    18121 cttcttcata aggcaaaagt aaagcttcat gtgaagtata aacactaact tctcttagac
    18181 ttggagtatt acttgtatta attccacaag cttccataaa agctaaagct tgtgaaattt
    18241 tttcactaat atcagtatat tgcttatgga gttcactctt ttttaaaaag cccaaattcc
    18301 aacgatgtac ttcatgtaaa tctgctaaac cacccttagc aaatccacgc aacaaattta
    18361 gcgttattgc gctttgataa taagcttcaa gcattctatg tggatcagga atgcgtgctt
    18421 gttcactaaa ttcaaaacca ttaataatat caccacgata actaggaaga cttataccat
    18481 ctaactcttc aaaatcacta cttcttggct tggcaaactg ccctgcaata cgaccaattt
    18541 ttataacagg acatccacca gcaaatgtaa gtactatagc catttgaagt aaaattttaa
    18601 acatatcacg gatatttaca gcgccaaaat tttcaaaact ttcagcgcaa tctccacctt
    18661 gaagtaaaaa agcttctttt ttacaaactc ttgctaaaga cttttgaaga tttctcactt
    18721 ctccagcaaa aaccaaagga ggaagtttct caagtcttgc taaaactcta ttcatttcct
    18781 cttgatctgg atagataggt tgctgtttta taggatagtt tttccaagaa ttcttagccc
    18841 acatggtttt ttctttcgtt ttatttatca gcttcctcta taagttgaat aaccaaaagg
    18901 agaaagggtt attggaacat gataatgttt ctgatcttta gaaagctcaa aacttacctc
    18961 tacaaaagga taaaaagtat ttattttgtg tgatgtgtaa tagtcttttg taaaaaattt
    19021 aagcttataa attccaaaag ccctattttc agctttttca tatggtaata aatctcctat
    19081 tctaccattt tcttcggtaa attcttcact tacttttttc cactgttgat ttgcttccaa
    19141 cttataaagc tcaactttta ctttaggagc aggttgtcca gaagtaatat ccaagacatg
    19201 agtacttaat tgatattcag tagcactcaa aaacattggc acgcttgcta gtattaataa
    19261 agttttttta atagaaaaca ttttctctcc ttgtataata tttaca
//
LOCUS       DBBXPZ010000028        19059 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.029, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000028 DBBXPZ010000000
VERSION     DBBXPZ010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19059)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19059)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19059
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.029"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            23..448
                     /gene="exbB"
                     /locus_tag="ACJFD7_000795"
     CDS             23..448
                     /gene="exbB"
                     /locus_tag="ACJFD7_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HGG0859633.1"
                     /translation="MEFLKDYIDLIIFLILGIMAFIAFWCVVERMLFFRKINFKNYEN
                     QEQFDDAISENLTTIYIIYSNAPYIGLLGTVIGIMVTFYEMGLAGNIDVKSIIVGLSL
                     ALKATALGLLVAIPALMAYNALLRKVSLLSNAYKANKNA"
     gene            441..830
                     /gene="exbD"
                     /locus_tag="ACJFD7_000796"
     CDS             441..830
                     /gene="exbD"
                     /locus_tag="ACJFD7_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HGG0859634.1"
                     /translation="MLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPS
                     SENATNISNNEKKLLITIDEKNTFYLNDKLADLNEVQNAIFSLDKKTIVELKSDKNAK
                     FESFVKIIDFLKAKEHENFQILTEKNK"
     gene            827..1510
                     /locus_tag="ACJFD7_000797"
                     /pseudo
     CDS             827..1510
                     /locus_tag="ACJFD7_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344999.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
     gene            complement(1523..2392)
                     /locus_tag="ACJFD7_000798"
     CDS             complement(1523..2392)
                     /locus_tag="ACJFD7_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859635.1"
                     /translation="MKIDTSASLTHSLTNNVDKKELSVLKKEDQDKIPVQDLSSLNSD
                     GVKVVFENKQGELIALNLSDENYSSLQKNFGSYTNYVARNDGSIRLNGEANQFVSNWF
                     ESVKDNFGSLNSNLNNKQQSVKLNFNTNTLQQSMQNLGFKTSDEKISDDANIEEKLNF
                     FIDKDVNKDGKVDDSDVKEPSMREILSDIKEASGSGASAMKTIDPQKINKKDDKENNI
                     KEKEDEDLLQKAQEKGLNALSADEQAKLEASNPEEFEKLKQKSLQELSQNLSKDFQNK
                     IENQEAQIVDKRV"
     gene            complement(2422..2499)
                     /locus_tag="ACJFD7_000799"
                     /pseudo
     CDS             complement(2422..2499)
                     /locus_tag="ACJFD7_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345001.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2594..3577
                     /locus_tag="ACJFD7_000800"
     CDS             2594..3577
                     /locus_tag="ACJFD7_000800"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase"
                     /protein_id="HGG0859636.1"
                     /translation="MKALALFSGGLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSE
                     IMKKRAAMVGADFEMIDVRNSYLQEVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKE
                     ENASFIITGEVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWV
                     DREKLEGISGRSRKRQLELAAKFGLEDFESPGGGCLLTLDSFAKKIRDFIEFDKDMQV
                     NDAQLLKYGRHLRLPNGAKMIIGRNELENTLLKGLKTPKYEVIELGDLIGAYSLVDEK
                     ISEKDLELALKIALTYTKHEVGKSYELKFKNQAYTSIAFENKADINQFFIS"
     gene            complement(3663..4751)
                     /gene="aroC"
                     /locus_tag="ACJFD7_000801"
     CDS             complement(3663..4751)
                     /gene="aroC"
                     /locus_tag="ACJFD7_000801"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HGG0859637.1"
                     /translation="MNTFGTRLKFTSFGESHGVAVGCIIDGIPAGVKFDEEFLQNELD
                     KRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPA
                     HADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLREFGICVQSGVFGVGTFV
                     SNLKEKEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGL
                     GEVLYDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSCNNDALKDGKFLSNHSGGI
                     LGGISNGENLILKTYFKPTPSIFSKQESIDKFGNNLEFELKGRHDPCVGVRGSVVASA
                     MVRLVLADCLLLNASANLNNLKNAYGLK"
     gene            complement(4751..5425)
                     /gene="rnc"
                     /locus_tag="ACJFD7_000802"
     CDS             complement(4751..5425)
                     /gene="rnc"
                     /locus_tag="ACJFD7_000802"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HGG0859638.1"
                     /translation="MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGD
                     AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENN
                     GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQ
                     EITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIAL
                     EKLGAL"
     gene            complement(5412..5852)
                     /gene="rnhA"
                     /locus_tag="ACJFD7_000803"
     CDS             complement(5412..5852)
                     /gene="rnhA"
                     /locus_tag="ACJFD7_000803"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HGG0859639.1"
                     /translation="MKHIEIYTDGSCLNNPGFGGWAYILRYKEYQKEGFGAEANTTNN
                     RMELMAIIESLKALKEPCEISLFTDSNLMVQSINEWLEGWIKKDFKGKKNIDLWKEYI
                     KVAKSHKIKAFWVKAHNGHLENERCDTLAREAALKIARENDEKH"
     gene            complement(5839..6825)
                     /locus_tag="ACJFD7_000804"
     CDS             complement(5839..6825)
                     /locus_tag="ACJFD7_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDC27 family protein"
                     /protein_id="HGG0859640.1"
                     /translation="MDFFFVEYRDPLVGLIILTILVFVVAVANYIWKIFASKDEEQKL
                     EKFIKKFEMDNAHKELLRNSSLSFGNLSFLAEIFTKSGEFEKATQIYLIVLEKCKDKQ
                     EREFIFLSLAKVYFKAGFLERAKEVLLQALKLRPRNIQALKLLKIVYLKLRSYKENLE
                     LLECLFELNEDVQKEHDFIKALELCTFNITDEEKKKKLLEFKIEDNPMLGRLVFEKYH
                     MFLGQNFFDICDLLYRENEAFNLENQDFLEFFYALGKISKHDDTHQFVFKNSNFKMLK
                     ILKDNSFNAGLEFSYRCSECKNVMPLFFYHCPVCYEFNTCKIIYEVKNNETH"
     gene            6895..8712
                     /gene="dnaG"
                     /locus_tag="ACJFD7_000805"
     CDS             6895..8712
                     /gene="dnaG"
                     /locus_tag="ACJFD7_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HGG0859641.1"
                     /translation="MITKESIENLSQRLNIVDIIENYIEVKKQGSSFVCTCPFHADKN
                     PSMHINPTKGFYHCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYTKEKQE
                     NKKELKSILPSLNAYFKDNLKHHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLL
                     QNQKIPLEDAMSVGALKKDENNEFYASFIWRVTFPIYDHKDLLVGFGGRTLNPNAPAK
                     YVNSPQNILFDKSRIFYAFNIAKENIAKKKEIIVCEGYMDAIAFHKAGFNNAVAVLGT
                     ALTEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGKVAILQGGKDPAE
                     LVAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLEPLV
                     ANSYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEKIHIAELELIAFLK
                     QHPDICNDFKQISDSVCFKHKILLDKILEKKGYEDSDIREFESKNIRKNLNYSEFLLG
                     ICKVNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTAELNNFLKEYLSFLKY
                     EKNEEILQQSFRNLNGIFGNKNFTAYDLGFSIQNNDEPF"
     gene            8794..9066
                     /locus_tag="ACJFD7_000806"
     CDS             8794..9066
                     /locus_tag="ACJFD7_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HGG0859642.1"
                     /translation="MMPFSDEELINPVKASLEKSLPMLERDGGGLEFLGIKNGIVYVH
                     LIGACKGCTSSGTTLKYGLERQLKIDIHPEITIINLNGGADEFAKL"
     gene            9053..9604
                     /locus_tag="ACJFD7_000807"
     CDS             9053..9604
                     /locus_tag="ACJFD7_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HGG0859643.1"
                     /translation="MQNYKKLGIEHFYKKDFKTAKMYFSMAYEKRKNKRLLNFICLCD
                     LALKSPKEASLLFDFYIEHYKISSIDKDLEEILSTIEFKKQENKQENEFEDGHALNYQ
                     DFLKSEEELGFQKSFENIINSTKLVIDNRDDFLDFLEKLLDNGYKDMTLNYIENVMPH
                     FWANDRFIKLQEKLMGFKSEIKT"
     gene            9588..10871
                     /gene="murE"
                     /locus_tag="ACJFD7_000808"
     CDS             9588..10871
                     /gene="murE"
                     /locus_tag="ACJFD7_000808"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HGG0859644.1"
                     /translation="MKLKLENSFITDNTLECEKECFFLQTTQNAKFHAQALEKGAKII
                     DVNECKKLLKIDEKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQ
                     IDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQ
                     DHLDFHGTFENYKEAKELFFTDESLKFINKDALAIKFNVRNAFTYGIENPALYQIKAY
                     SLEEGISAIATNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFG
                     GVCGRVEQVAKGVIVDFAHTPDGIEKVLDTLKNKKLIVVFGAGGDRDKTKRPLMGKIV
                     EHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKRALELKENDDL
                     VVILGKGDETTQEIKGIKYPFSDKVVVNEILKNQG"
     gene            10875..11186
                     /locus_tag="ACJFD7_000809"
     CDS             10875..11186
                     /locus_tag="ACJFD7_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HGG0859645.1"
                     /translation="MFENMDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKV
                     SANGKGEIIDVSIDDSLLEDKESLQILLISAINDVLAMVAQNRSSMANDVLGGFGGMK
                     L"
     gene            11183..12277
                     /locus_tag="ACJFD7_000810"
     CDS             11183..12277
                     /locus_tag="ACJFD7_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HGG0859646.1"
                     /translation="MKKILIICMLFTLSFGIERPKFEDFLAGYERNKASMLNYEGMPA
                     FALSENLLAVLKQPNAKLNKYVKYDPFLNLYLVRTDFSLIPTPMGDEEKLTRNDWVGI
                     WDPNKPYIGHIKYLAQNIDEKDQLDFNSKIGLLGTPCCEMMGIALNNSSFIGNRYLKH
                     FIKYNDVYWGDIGVDFVVRENKIYVNNVRKNPQFLINDQVISVDGLPANDLRKLNEKI
                     LFADRGSTLYFQVLRDNMDLNISTEVFAKDLSKFNLPDSKPKPKIINFTSNLGLTVNT
                     SLVVTKIDPKSKASNAGFMVGDKILRVNNIILNNFKELQNILSAGNDFSILIERKSTK
                     LPLSNFNNELGGNANSGGDGKFQFFIRLTK"
     gene            12274..13119
                     /gene="ispA"
                     /locus_tag="ACJFD7_000811"
     CDS             12274..13119
                     /gene="ispA"
                     /locus_tag="ACJFD7_000811"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004659 - prenyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HGG0859647.1"
                     /translation="MNLKELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQL
                     LLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDET
                     TAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRL
                     SLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDV
                     TTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLSECEQDLEKLNEKLAQMIQNL
                     IIQYL"
     gene            13129..15027
                     /gene="tkt"
                     /locus_tag="ACJFD7_000812"
     CDS             13129..15027
                     /gene="tkt"
                     /locus_tag="ACJFD7_000812"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004802 - transketolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HGG0859648.1"
                     /translation="MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSY
                     HLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHP
                     EISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
                     YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYE
                     EINKALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDP
                     NISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFK
                     GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREH
                     AMAAINNAFARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDG
                     PTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNADIPSAFVLSRQKLKALNEP
                     VFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFE
                     KQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFEHFGFSVSK
                     LVNFILSK"
     gene            15029..16138
                     /gene="iamB"
                     /locus_tag="ACJFD7_000813"
     CDS             15029..16138
                     /gene="iamB"
                     /locus_tag="ACJFD7_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0859649.1"
                     /translation="MNTNFKFQNNTLFIFGIWDKTSIYKLKIKDFLALIQSKEVIFDF
                     KDLKAIDTAGVRFFLALENDLKDKNIKIAKEGLNSRFQTLFELCEKNYQRLSKTKKSH
                     KNFSEYFIDLGKLSLELLKILRKFINFTGAFFTSLFLCLKNPKNFRFIAFLYHIENSA
                     FKALPIVILTALLVGVVLAYQAAYQLAQFGANIFIVDLMGISATRELAPLIAAIVIAG
                     RSASSYTAQIGVMKITDEIAAMNTMGFRSFEFIIIPRVMALIVAMPLIVAISDAISII
                     GGMMVAKLNLDISFAEFLRRFREAVDIKHIFIGLAKAPIFGFLIGLIACFRGFEVKNT
                     TQSIGIYTTKSVVNAIFWVIAFDALFSVVLTSAGI"
     gene            16139..16861
                     /gene="iamA"
                     /locus_tag="ACJFD7_000814"
     CDS             16139..16861
                     /gene="iamA"
                     /locus_tag="ACJFD7_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0859650.1"
                     /translation="MVIKAQNIITKFGEKIVHDGVSFEIKKNEIFGILGGSGSGKSVL
                     LKQMLMLEHFDGGEYEILGYKLKNINEKDALALRKKWGVVFQFAALFSFFNVYENIAI
                     PLKEYTHLDENSIQELVLMKLKMVGLNESVLKQFPSELSGGMQKRVAIARALALDSKL
                     LFLDEPTSGLDPHSSREFDDLVLELKKSFDLNIILVTHDKESMKNLLDRFIILENKKV
                     GFCGTYEELRLQNERLFKRFME"
     gene            16864..17754
                     /locus_tag="ACJFD7_000815"
     CDS             16864..17754
                     /locus_tag="ACJFD7_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015914 - phospholipid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HGG0859651.1"
                     /translation="MENRANYFFVGLFVFGVFFASLGFILWLGGYSKEESFKYYEIHT
                     QESVAGLGIKAPVRLLGVEVGSVEEISIYNQDELGVNIRIKVKNNTPIKEDTFATLQL
                     QGITGLKFVQLQGGSKNSKDLVSIQGKLPVIPFKESFLATIDRQSEHIFSLVKTADDK
                     SKELLSEKNLKNLEILLQNLAELSANLNANSKNLSLNLSNASLKIGKMADNISLSAQN
                     FNSSLKDIKESTMILKNFIKKADEKLNTYDDIKASLMQNLELFKRVLIESNILIENLQ
                     NSPADLIFKETKPKLGPGEK"
     gene            17754..18353
                     /locus_tag="ACJFD7_000816"
     CDS             17754..18353
                     /locus_tag="ACJFD7_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type transport auxiliary lipoprotein family
                     protein"
                     /protein_id="HGG0859652.1"
                     /translation="MLKQLFCILTFIFMLCGCSLRHETINKNENIILKDEGIDSNIFF
                     KKTGKILKIRNANAPLYLNSRAIVYIDNGFSNKYAHYFWGDLPSNLYSFLILSKFEQS
                     NIFTTLLSSTSSLSADYALESRINSFEQILNNNENYAQISISVNFINLENNQIIAHKI
                     FNTKEKIEKKDIHSTYNAFQKALNKIGNEIVFWVNSNLS"
     gene            18409..18909
                     /locus_tag="ACJFD7_000817"
     CDS             18409..18909
                     /locus_tag="ACJFD7_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar FLiS export co-chaperone"
                     /protein_id="HGG0859653.1"
                     /translation="MKSDLDIFKKHLGEIQGVNEFKANQICSQINDANDFIGALQVLD
                     MSLKKIEKSILERIDENSDDMQKRTLDATASQLIQNCSFMGTALFGNIFNVYVGKKLF
                     EFEIANPLLILQTSNYEGVLAYIQDKRDEIKIILSELATAITMGETMDNTGIYNSTMD
                     FKNLFK"
BASE COUNT         6970 a         2958 c         2892 g         6239 t
ORIGIN      
        1 aagtatattt ttggagaaaa atatggaatt tttaaaagat tacatcgatt taattatctt
       61 tttaattcta ggaattatgg catttatagc tttttggtgt gttgtagaaa gaatgctatt
      121 ttttagaaaa attaacttta aaaattatga gaatcaagag caatttgatg atgcgattag
      181 tgaaaattta accactatat atatcatcta ttccaatgcc ccttatatag gacttttagg
      241 cactgtaata ggcatcatgg ttacatttta cgaaatgggc ttggcgggca atatagatgt
      301 caaatctata atcgtggggc tttctttagc tcttaaagct acagccttag gacttttggt
      361 tgctattcct gctttaatgg cttataatgc cttacttaga aaagtttccc tcttaagcaa
      421 tgcttataag gcaaataaaa atgcttaaac taccaaaaaa tgaaggttta aatatagtcc
      481 catttataga cattatgctt gttttgcttg ctatagtgct tagtatttca acctttattg
      541 cgcatggaaa aattcaaatc tcacttcctt caagtgaaaa tgctaccaat ataagcaata
      601 atgaaaaaaa acttcttata accatagacg aaaaaaatac tttttattta aatgataaat
      661 tagctgattt aaatgaagtt caaaatgcta ttttttcact tgataaaaaa accatagtag
      721 aactaaaaag cgataaaaat gctaaatttg aaagctttgt aaaaattata gattttttaa
      781 aagccaaaga acatgaaaat tttcagattc ttactgagaa aaacaaatga aaactttatt
      841 tttaaatcat aaataccaag cttcttatat aacttttata gtctttatac ctttactttt
      901 tgtcattttt cactcgaatg acttttttaa aatggaaatt aaaaatgaag attctttttc
      961 tttagcaata aaacaattta cccaaactaa tccaacaaat gagaccaaac caacagaatc
     1021 cattatagaa cctatcaaac caaaacctca gccaaaagtt attaaaaaaa ctcctgaaaa
     1081 aatgcaaaaa aaagataaaa aaacacctcc acacccaata ccaaataaaa ccccaatagc
     1141 accaactcaa gaagttaaaa cttttgcaaa aacaactgat acaaatgtca aacctaagat
     1201 cactcaatta acacaaggaa aagataatca ccctgtatta aaagaaatcc aaaaagctat
     1261 acaacaagca caattttatc caaggcaagc aaaaaaatgc gtatgcaagg aactgtaaaa
     1321 gtagaatttt tatggaaaga aaacaaaact ttagcagatt taaaaatcat agaaagctca
     1381 ggatatgatt tattagataa aagtgcttta gaaagcataa gaaaagcttc tttaaatttt
     1441 ccacactata acggagattt aagaattaca ctacctagtt atatatgatt ttaaaaccct
     1501 aagagggtaa aattataatt tgctacactc tcttatctac aatttgtgct tcttgatttt
     1561 caattttatt ttgaaaatct ttacttaaat tctgacttaa ttcttgcaaa gatttttgct
     1621 tcagtttttc aaattcttca ggattgctag cctcaagctt tgcctgctca tcagcactta
     1681 aagcatttaa acctttttct tgggcttttt gaagcaaatc ttcgtcttct ttttctttga
     1741 tattattttc cttatcatct tttttattga ttttttgcgg atctatggtt ttcatagcac
     1801 tagctccact acctgatgct tctttaatgt cgcttaaaat ttctctcatg ctaggttctt
     1861 taacatcact atcatcaact ttaccatctt tatttacatc tttatcaata aaaaaattta
     1921 atttttcttc tatatttgca tcatcagata ttttttcatc gcttgtttta aagcctaaat
     1981 tttgcatact ttgttgaagg gtatttgtat taaaatttaa ttttacactt tgttgtttat
     2041 tatttaaatt tgaatttaaa gaaccaaaat tatcttttac actttcaaac caatttgaaa
     2101 caaattggtt tgcttcgcca ttaagcctta tactaccatc atttctagca acataattcg
     2161 tataagaacc gaaatttttt tgtaaactac tataattttc atcgcttaaa tttaaagcta
     2221 taagttcacc ttgcttattt tcaaaaacaa ccttaacacc atcgctattt aaactcgaaa
     2281 gatcttgcac gggaatttta tcttgatctt ctttttttaa tacgctaagc tcttttttat
     2341 caacattatt agttaaagaa tgggttaaac tagcagaagt atcgattttc attatttatc
     2401 cttttttaca ttttgcaaaa gttcttgctc gtagttagca caagaatttg caaaagcaaa
     2461 agaactcaaa atgcttaaaa ccaaaattat ttttaacact ttccaatcct tattttaaag
     2521 attttttagt taaaattata ccttttataa tcgacaaaat cttaaaaaac tttataatct
     2581 cagaaaggaa tcaatgaaag cattagctct ttttagcggt gggcttgata gtatgcttgc
     2641 aatgaaactc atcactgcac aaggcataga agttaaagct ctaaatatca acataggttt
     2701 tggaagcaca agtgataaaa gcgaaatcat gaaaaagcgt gcagcgatgg taggtgcgga
     2761 ttttgaaatg atagatgtaa gaaattccta tcttcaagaa gtgcttttta atccacaata
     2821 tggctatggc aaacatttta atccttgtat agattgtcat gcttttatgt ttaaaactgc
     2881 tcttgctatg ttaaaagaag aaaatgcaag ttttatcatc acaggagaag ttttaggaca
     2941 acgccctatg agtcaaagaa gtgatgcaat ggcaaaggtt aaaaaacttg ctcttgatga
     3001 agaagattta atcttgcgtc ctatgtgtgc aaaaaaccta cctctaacca aacctgaaag
     3061 agaaggttgg gtagatagag aaaaactcga aggtattagc ggaagaagtc gtaaaagaca
     3121 acttgaactt gcagctaaat ttggattaga agactttgaa agcccaggtg gaggttgttt
     3181 gctaactctt gatagttttg ctaaaaaaat tcgagatttc atagaatttg acaaagatat
     3241 gcaggttaat gacgcacaac ttttaaaata tggtcgtcat ttaagattac ccaatggagc
     3301 taaaatgatc ataggtagaa atgaacttga aaatactctt ttaaaaggtt taaaaactcc
     3361 taaatatgaa gtcatagaac ttggggattt aatcggagct tactctttgg tagatgaaaa
     3421 aatttcagaa aaagacttag aacttgcctt aaaaatagcc cttacctata ctaaacacga
     3481 agtaggaaaa agctatgaac ttaaatttaa aaatcaagct tatacaagta tagcttttga
     3541 aaataaggct gatattaatc aattttttat tagttaaagt ataaagtatt tagcaaaaca
     3601 agcgatatag tatttgaatc ttttcaaaat attgcaatca agcccatgaa aatgggcttt
     3661 ttttatttta atccataagc attttttaaa ttgtttaaat tcgcactcgc attcaaaagc
     3721 aaacaatcag ccaaaactaa acgcaccata gcactagcta caacacttcc tctaacacct
     3781 acacaaggat catgcctacc tttgagttca aattccaaat tattgccaaa tttatctata
     3841 ctttcttgct tggaaaaaat agaaggagta ggtttaaaat aagtttttaa aataagattt
     3901 tctccatttg aaattcctcc taaaattcct ccgctatgat tacttaaaaa cttgccatct
     3961 tttaaagcat cattattaca cgatccgcgc attttgcttg cattaatacc ttcgcctatt
     4021 tcaactgctt taacagcatt aattcccatt aaagcatgag ctaatttaga gtctaactta
     4081 tcataaagaa cttctccaag tcctataagc ataccactaa cttttgtaaa aacagcagcg
     4141 cctacgctat cttttgaatt tctagcattt aaaatttcat ttttaaagtc actttctagt
     4201 tttggatcaa ggcaaaaaat ttcacttttc ttagcaaatt caaaatcaaa ttctttttct
     4261 ttcaaatttg atacaaaagt tcctacccca aaaacaccac tttgaacaca aatgccaaat
     4321 tcacgcaaaa gcatcgctgc aactgcacca ccagccactc tagcaacact ttccctagca
     4381 cttgatctac ccccacccct atgatctctt atgccatatt tataaaaata agtaaaatcc
     4441 gcatgagcag gacgaaatag atcttttaaa ttatcataat ccttagaatg ggcattttca
     4501 ttaaaaacca ctatagctat gggatgaccc gttgtatatc cttcaaaaac cccgcttaaa
     4561 acctgagctt tatcgctttc ttttcttggt gttgcaaatt tacttccgcc tttgcgttta
     4621 tcaagctcat tttgcaaaaa ttcttcatca aatttaactc cagcaggtat tccatcaata
     4681 atacatccaa cagccacacc atgagactca ccaaaacttg taaatttcaa tctcgtacca
     4741 aaggtattca ctataaagct cctaatttct caagtgcaat ttttgctgcc atttgctgtg
     4801 cttctttttt gcttcctgca atagctcttg caagttcttt accatcaagc attaaagcaa
     4861 tttcaaattg ctttaaatga tcagggccaa aagcacgcac tgtttcatac tgcggagttt
     4921 gtccgatttt tccctgtgta atctcttgta attttgtttt ataatctttt ataagaattt
     4981 ttgcatcaat ttgagggaaa tttttttcta taagccttaa agcaatagtt tttgcaaact
     5041 cgaacccagc ttctaaatgt atagcaccta taatggcttc taacgcatct gaaagtatag
     5101 aaggcttttc ttttcctcca ttgttttcct cagcaacact cataagaata aaatcgccca
     5161 aatttaaact atttgcaatt tttgcaaaag acttttcatt cactaaagct gctctaagct
     5221 tagataaatc tccttcggca tctttggcga atttatgaaa aaggtattca cctacaacta
     5281 aatcaagcac ggcatcacct aaaaattcca agcgttcgtt gttgtaagat tttttaaaac
     5341 ttttatgggt taaagcatgt ataagaagat ttttatcttt aaattcataa gttaaactct
     5401 gctctagctt ttcaatgttt ttcatcattt tcccttgcaa ttttcaaagc agcttcacgc
     5461 gccaatgtat cacacctttc attttccaaa tgtccattat gtgcttttac ccaaaaagcc
     5521 ttaatcttat gagattttgc cactttaata tattccttcc ataaatctat atttttttta
     5581 cctttaaaat ccttttttat ccatccttct agccattcat taatactttg aaccattagg
     5641 ttagaatctg taaaaagcga aatttcacaa ggctctttta aagccttcaa agattcaata
     5701 attgccatta gctccattct attgttagtg gtattagcct cagctccaaa accttccttt
     5761 tgatactcct tataacgcaa aatataagcc catccgccaa aacctggatt attaagacat
     5821 gaaccatctg tataaatttc aatgtgtttc attgtttttc acttcataaa taattttaca
     5881 agtattaaac tcataacaaa caggacagtg ataaaaaaac aaaggcataa catttttaca
     5941 ctcagaacaa cggtatgaaa attctaaccc cgcattaaaa gaattatctt ttaaaatttt
     6001 taacatttta aaattagaat ttttaaaaac aaactgatgt gtatcatcat gctttgaaat
     6061 tttacccaaa gcataaaaga attctaaaaa atcttgattt tctaaattaa acgcttcatt
     6121 ttctctataa agcaaatcac aaatatcaaa aaaattttgc cctaaaaaca tatgatattt
     6181 ttcaaaaact aaacgcccta acataggatt atcttctatt ttaaattcta aaagtttttt
     6241 ctttttttct tcatcagtga tattaaaagt acaaagttct aaagctttga taaaatcatg
     6301 ttctttttgt acatcttcat taagctcaaa aagacattct aaaagttcta aattttcttt
     6361 ataagaacga agttttaaat aaacaatttt taaaagtttt aaggcttgta tatttcttgg
     6421 acgcagtttt aaagcttgta ataaaacttc ttttgcacgc tctaaaaatc ctgctttaaa
     6481 ataaactttt gctaaagaaa ggaaaataaa ttccctttct tgtttatctt tacatttttc
     6541 aagaacaatc aaataaattt gggttgcttt ttcaaattcc ccgcttttag taaaaatttc
     6601 agccaaaaaa cttaaatttc caaaactcaa gctactattt cttaacaact ctttatgagc
     6661 attatccatt tcaaattttt ttataaattt ttcaagcttt tgttcttcat ctttgctagc
     6721 aaatattttc caaatataat ttgcaacagc tacaacaaat actaaaatgg ttaaaattat
     6781 aagccctact aaagggtctc tgtattctac aaagaaaaaa tccatagtct cgctctaaaa
     6841 attttatgcc aaattatagc caaatctttg tataatttta acaaggtttg taaaatgata
     6901 actaaagaaa gtatagaaaa tttatcccaa agacttaata ttgttgatat tatagaaaat
     6961 tatattgaag taaaaaaaca aggctctagt tttgtgtgta cctgtccttt ccatgcagat
     7021 aaaaacccgt ctatgcatat caatcctacc aaaggttttt atcattgttt tgcttgcaaa
     7081 gctggtggag atgcttttaa atttgtaatg gattatgaaa aattaagttt tgccgatgca
     7141 gttgaaaaag ttgcaagcct tagtaatttt actttgagct atacaaaaga aaaacaagaa
     7201 aataaaaaag agctaaagtc tatactacca agcttaaatg cgtattttaa agataatctc
     7261 aaacaccaca aagaagtctt aacctatctt taccaaagag ctttaaatga caaagatata
     7321 gccaaattcg aattaggttt tgcaggagca agtgaagata gtataagatt gttgcaaaat
     7381 caaaaaattc ctttagaaga tgctatgagt gttggagctt taaaaaaaga tgaaaataat
     7441 gaattttacg caagttttat atggcgtgtc acctttccaa tctacgatca taaagactta
     7501 ttggtagggt ttggagggcg tactttaaat cccaatgcac cggcaaaata tgtaaattca
     7561 ccccaaaata tactttttga taaaagtaga attttttatg cttttaacat cgctaaagaa
     7621 aatatagcca aaaaaaaaga aataatagta tgtgaaggct acatggatgc aatagctttt
     7681 cacaaagcag gatttaataa tgctgtagca gttcttggaa cagcattaac cgaacatcat
     7741 ctacccttaa tccgccgtta tgatgcaaaa gtgattttat gttttgacaa tgatgaggca
     7801 gggttaaaag ctgcgacacg atctgcattt ttattaagca caaacaaaat agacggtaaa
     7861 gtggcaattt tgcaaggcgg aaaagatcct gctgagctcg tagcaaaaaa tgaaagcaca
     7921 aaactccata atatactcga cgaaggaata gagcttggtg aattttatat cagacgctta
     7981 atatccactc attccataat ttctgctctt gataaacaaa aagctttaga aactatacaa
     8041 aaattcacct ttaatcttga gcctttagtg gcaaattctt acactagtct agtttcaaat
     8101 ttattaaaag tggatgaaaa atttattgtc ttatcacaaa attcaaaaaa aaccatacaa
     8161 acccctttaa tttctcaaaa taaatacaat tttcctaaag aaaaaattca cattgcagaa
     8221 ttagaactta tagctttttt aaaacagcat ccagatatat gtaacgattt taagcaaatt
     8281 agtgatagtg tttgttttaa acataagatt ttattggata aaattttaga aaaaaaaggt
     8341 tatgaagata gtgatattag agaatttgaa agtaaaaata ttcgaaaaaa tttaaactat
     8401 agcgaattct tgttaggtat ttgcaaggtt aatttagctt ttttaaacaa tgtaaaaatt
     8461 aaaaattcta cactcgcatt aaaaaaacaa ctttttacgc ttattgataa aaatttaaat
     8521 cttttaatta aaaatttaaa taccgcagaa ttaaataatt ttttaaaaga atatttaagc
     8581 ttcttaaaat atgaaaaaaa cgaagaaatt ctgcaacaat catttagaaa cttaaatgga
     8641 atttttggta acaaaaactt tacagcttat gatttaggat ttagcataca aaataatgac
     8701 gaaccttttt aatttattta aatttcaagc cttaatttac ctttttttaa acacaatcac
     8761 gctaaagtat ataaaaattt ttaaggataa attatgatgc cttttagtga tgaagagctt
     8821 ataaatcctg ttaaagcaag tttagaaaag agcttgccta tgcttgaacg tgatggcgga
     8881 gggcttgaat ttttaggaat taaaaatggg atcgtttatg tccatttaat aggagcttgt
     8941 aaaggctgta catcgagtgg aacaacgcta aaatacggtc ttgaaaggca acttaagatt
     9001 gatattcatc cggaaatcac tataatcaat ttaaacggcg gagcagacga atttgcaaaa
     9061 ttataaaaaa cttggaattg aacattttta caagaaagat tttaaaactg caaaaatgta
     9121 tttttctatg gcttatgaaa aacgcaaaaa taaacgcttg ctaaatttta tctgcctttg
     9181 tgatcttgct ttaaaatctc ctaaagaagc ttctttactt tttgattttt atatagaaca
     9241 ttacaaaatc tctagcattg ataaagactt agaagaaatt ttaagtacaa ttgaatttaa
     9301 aaaacaagaa aacaaacagg aaaacgaatt tgaagatggg catgcgttaa attatcaaga
     9361 ttttttaaaa agcgaagaag aacttggctt tcaaaaaagt tttgaaaata tcattaacag
     9421 cactaaatta gttattgata atcgtgatga ttttttagat tttttggaaa aattacttga
     9481 taatggctat aaagatatga ctttaaatta catagaaaat gttatgcctc atttttgggc
     9541 aaatgataga tttatcaaac tccaagaaaa actcatggga tttaaaagtg aaattaaaac
     9601 ttgaaaattc attcattaca gataacacct tagagtgtga aaaagaatgc ttttttttgc
     9661 aaaccacaca aaatgctaaa tttcacgctc aagccttaga aaaaggtgca aaaatcattg
     9721 atgtaaatga gtgtaaaaaa cttttaaaaa tcgatgaaaa gattcaaatc ataggaatca
     9781 caggaaccaa tggcaaaacc acaaccgcag cagcgattta ttctatctta ttggatttag
     9841 gttataagtg tgggctttgt gggacaagag gagcttttat caacgatgaa caaatcgatg
     9901 aaaaatcctt aaccacctcc cctattctta aaaccttaga atacctacaa atagccactc
     9961 aaaaaaaatg tgattttttc atcatggaag taagctcaca cgcactcgtt caaaaccgca
    10021 tcgaaggctt aaattttgct gctaaaattt ttaccaatat cactcaagat catttagatt
    10081 ttcacggtac ttttgaaaat tataaagaag caaaagaact tttttttacc gatgagagtt
    10141 taaaatttat caacaaagat gctttggcta ttaaatttaa tgtgcgtaat gcttttactt
    10201 atggcataga aaatcctgct ttatatcaaa tcaaagctta ttctttagaa gaaggcatta
    10261 gtgctattgc aacaaataaa aatcaaactt ttcacataga ctcgcccttg ctaggacttt
    10321 ttaatcttta caatcttcta gttgctagtg cttgtgtgaa tgaactcgta aagcctgatt
    10381 taaaagactt ggaaaaagct atcagtggat ttggcggggt ttgtggcagg gtagaacaag
    10441 tagcaaaagg tgtgattgta gattttgctc atacgccaga tggcattgaa aaagtgcttg
    10501 acactcttaa aaataaaaaa ctcatcgttg tttttggagc aggtggagat agagataaaa
    10561 ccaaacgccc tttaatggga aaaatcgtcg aacattttgc aaaaattgct atcattacaa
    10621 gtgacaatcc acgcagcgaa gaaccaaaaa ccatcatgga agaaatttta tcaggcttta
    10681 ccaaaaaaga aaaagtttta atgatagaag atagaaaaga agctataaaa agagctttag
    10741 aactaaaaga aaatgacgat ttagtcgtta ttttaggcaa aggtgatgaa actactcaag
    10801 aaattaaagg gataaaatat ccttttagtg ataaagtagt tgttaatgaa attttaaaaa
    10861 atcaaggata atcaatgttt gaaaatatgg atttttctaa aatgggagaa cttttaaatc
    10921 aagttcaaga aaaagcaaaa aatatagaac tagaacttgc aaatcgtgaa tttagtgcca
    10981 aaagtggagc aggacttgtt aaagtaagtg ccaatggaaa gggtgaaatt atcgatgtta
    11041 gcattgatga ttctttactt gaagataaag aatccttgca aattttactt atttctgcaa
    11101 ttaatgatgt tttggctatg gttgcacaaa atcgttcaag tatggcgaat gatgttttag
    11161 gcggttttgg aggtatgaaa ttatgaaaaa aattttaatt atttgcatgc tttttacttt
    11221 gtcttttggt atagaaagac ctaaatttga agatttttta gcaggttatg aaagaaataa
    11281 ggcaagcatg ctcaactatg aaggaatgcc agcttttgca ctcagtgaaa atttacttgc
    11341 tgtgttaaaa cagcctaatg ctaagcttaa caaatatgta aaatacgatc catttttaaa
    11401 tttatatctt gtaagaactg actttagcct aatccctact cctatgggtg atgaagaaaa
    11461 acttactcgt aatgattggg ttggaatttg ggatcctaat aaaccttata tagggcatat
    11521 taagtattta gctcaaaata ttgacgaaaa agatcaactt gattttaatt ctaaaatagg
    11581 acttttaggg actccatgct gtgaaatgat ggggattgct ttaaataata gctcttttat
    11641 aggcaatcgc tatttaaaac attttataaa atataacgat gtttattggg gagatattgg
    11701 cgttgatttt gttgttcgag aaaataaaat ttatgttaac aatgtaagaa aaaatccaca
    11761 atttttaatc aatgatcaag ttataagtgt tgatggctta cccgccaatg atttaagaaa
    11821 actcaatgaa aaaattcttt ttgcagatcg cggaagcact ctttattttc aagtgttgcg
    11881 tgataatatg gatttaaata tttctactga agtttttgca aaagatttga gcaaatttaa
    11941 ccttcctgat tctaaaccaa aaccaaaaat tataaatttc acaagcaatc ttggtttaac
    12001 ggttaatact agtcttgttg taaccaaaat agatccaaaa tcaaaagcat caaatgcagg
    12061 atttatggta ggagataaaa ttttacgcgt taataatatt attttaaata attttaaaga
    12121 attacaaaat attttaagtg ctggtaatga ctttagcatc ttaattgaac gcaaaagtac
    12181 taaattacct ttatcaaatt tcaacaatga actaggcgga aatgccaact caggtggcga
    12241 tggtaaattt caatttttca taaggcttac taagtgaatt taaaagaact ttttatccat
    12301 cacttagaaa aaaatctacc taaagttgaa agctttcatc ctttttttaa tgaagcttta
    12361 gcacttatgt taaaagcggg gggaaagcat tttcgcgcac aattgctttt aagcgtagta
    12421 caaagcaata aacctgaact tttaaatcaa gctttagatg tggctttagc tttagagttt
    12481 atccatactt attcactcat acacgatgat ttacccgcta tggataatgc agactttaga
    12541 cgaggaattc caaccttaca caaaagctac gatgaaacta cagccatctt agtgggtgat
    12601 gctttaaata ctgaagcttt tttagttcta agtcatgctc atttaaaaga tgaaatcaaa
    12661 atcaaactca tcaaaaccct tgcctttaat gcaggactta atggaatggt cataggacaa
    12721 gctattgatt gtttttttga agacaaaaga ctgagtttaa atgaacttga gtttttacac
    12781 acacataaaa ccgcaagatt aatcgctgca gctttaaaaa tgggttgtga aatttgcgaa
    12841 cttaacaacg aagaaagcaa tcaaatttac aaacttggtt taaaactagg actgattttt
    12901 caaatcaatg atgatattat cgatgtaacc acaagtcaag aacaaagcgg aaagcctact
    12961 aacaacgata ttcataaaaa ttcttttgtc aatttacttg gacttgaaca agccataaaa
    13021 acaaaagaaa atcttcttag tgaatgcgaa caagacttag aaaaacttaa tgaaaaactc
    13081 gcacaaatga tacaaaattt aataattcaa tacttataaa ggcaaaaaat ggacattcaa
    13141 attttacaag aacaggcaaa tactctaaga tttttaagtg ctgatatggt gcaaaaagca
    13201 aactcaggac acccaggtgc acctttgggt ttagcagata ttttaagtgt tttaagttat
    13261 catttaaaac acaatcctaa aaatcccact tggctaaacc gcgatagact tgtattttca
    13321 ggcggacatg caagtgcttt gctttatagt tttttacatt taagcggcta tgacttaagc
    13381 ttagaagatc ttaaaaattt ccgccaactt cattctaaaa cccctggaca ccctgaaatt
    13441 tcaactcttg gagtagaaat cgctacaggc cctttaggac aaggcgttgc caatgctgta
    13501 ggctttgcta tggcagcaaa aaaagcacaa aatttgctag gcagtgattt aatcgatcat
    13561 aaaatttatt gtctttgcgg agatggggat ttacaagaag gcatttctta tgaagcttgt
    13621 tctttagcag gacttcacaa acttgataac ttcatactta tttatgatag caacaatatc
    13681 tccatagaag gcgatgtagg tttagccttt aacgaaaatg taaaaatgcg ttttgaagca
    13741 caaggatttg aagttttaag tataaatgga cacgattatg aagaaatcaa taaagcctta
    13801 gaacaagcta aaaaatccac aaaaccttgt cttatcatcg caaaaacaac tatagcaaag
    13861 ggtgcaggag agcttgaagg cagtcataaa agccatggcg cacctttggg tgaagaagtg
    13921 attaaaaaag ccaaagaaca agcaggtttt gatccaaata tcagttttca tatcccacaa
    13981 gcaagcaaaa tccgctttga aagtgctgta gaacttgggg atttagaaga agcaaaatgg
    14041 aaagataagc ttgaaaaaag tgctaaaaaa gaacttttag aaaggctatt aaatcctgat
    14101 tttaacaaga tagcttatcc tgattttaaa ggaaaagatc ttgctacaag agatagtaat
    14161 ggtgaaattt taaatgtttt agctaaaaat ttagaaggat ttttaggtgg aagtgcagac
    14221 ttaggccctt cgaataaaac agaacttcac agtatgggag actttgtaga aggtaaaaat
    14281 atccattttg gtatcagaga acacgctatg gcagcgatta acaatgcttt tgcaagatat
    14341 ggaattttct taccattttc ggcaactttt ttcatcttta gcgagtactt aaaacctgcc
    14401 gcaagaatag cagctctaat gaaaatcaaa cattttttca ttttcacaca cgatagcata
    14461 ggcgtgggcg aagatggacc aacacaccaa cctatagaac aacttagcac ttttagagct
    14521 atgccaaatt ttttaacctt tagacctgct gatggggtgg aaaatgtcaa agcttggcaa
    14581 atagccctaa atgctgatat tccgagtgct tttgtgcttt cacgccaaaa actcaaagct
    14641 ctaaatgaac ctgtttttgg agatgtaaaa aatggagcgt atttactcaa agaaagcaaa
    14701 gaggctaaat ttacactttt agcaagtgga agtgaagttt ggctttgttt agaaagtgca
    14761 aacgaacttg aaaaacaagg ttttgcttgt aatgttgttt ccatgccttg ttttgaactt
    14821 tttgaaaaac aagataaagc ttatcaagaa agattgttaa aaggtgaagt tataggtgtt
    14881 gaagcagcac attctaatga actttataaa ttttgccata aagtgtatgg catagaaagt
    14941 tttggagaaa gtggcaaaga caaagatgtg tttgaacact ttggatttag cgtttcaaag
    15001 cttgtaaatt ttatccttag caaataaaat gaatacaaat ttcaaatttc aaaataacac
    15061 tctttttatc tttggaattt gggataaaac aagcatttat aagttaaaaa taaaagattt
    15121 tttagctttg atccaaagca aggaagtgat ttttgatttt aaagatctaa aagcaatcga
    15181 taccgctgga gtgagatttt tccttgcttt ggaaaatgat cttaaagata aaaatattaa
    15241 aatcgccaaa gaaggcttaa attcacgctt tcaaaccctt tttgaacttt gtgaaaaaaa
    15301 ctaccaaaga ctaagcaaaa caaaaaaatc acataaaaat ttcagtgaat actttatcga
    15361 tcttggaaaa ttaagtttag aacttttaaa aattttaaga aaattcatca atttcacagg
    15421 agcttttttc acaagtcttt ttttatgcct taaaaatcct aaaaattttc gctttattgc
    15481 ttttttatat catatagaaa attctgcttt taaagcctta cctatagtta ttttaactgc
    15541 tcttttagta ggagtggttt tagcctatca ggctgcttat caactcgcac aatttggagc
    15601 caatattttc atagtggatt tgatgggaat ttcagccact agagaacttg cacctttaat
    15661 cgctgccata gtgatcgcag gaagaagtgc aagttcttat accgcacaaa ttggagtgat
    15721 gaaaattact gatgaaattg cagctatgaa tactatgggt tttcgttctt ttgaatttat
    15781 tattattcca cgtgtcatgg ctttgatagt ggctatgcct ttaatcgttg ccattagtga
    15841 tgcgatcagt attataggtg gaatgatggt tgcaaaatta aatcttgata tttcttttgc
    15901 cgaattttta agacgtttta gagaggctgt agatataaaa catatcttta taggacttgc
    15961 aaaagcacct atttttggat ttttaatagg acttattgct tgttttcgtg gttttgaggt
    16021 aaaaaacact acacaaagca taggaattta tacaacaaaa agcgttgtaa atgctatttt
    16081 ttgggtgata gcttttgatg ctttattctc tgttgtttta acttctgcag gaatttaaat
    16141 ggttattaaa gcgcaaaata tcattacaaa atttggagaa aaaattgtcc atgatggcgt
    16201 aagttttgaa atcaaaaaaa acgaaatttt tggtatttta ggaggtagtg gaagtggaaa
    16261 atccgtcctt ttaaaacaaa tgcttatgct tgaacatttt gatggtggag aatatgaaat
    16321 tttaggctat aaacttaaaa atatcaacga aaaagatgca cttgctttgc gtaaaaaatg
    16381 gggtgtggtt tttcagtttg ctgcactttt tagctttttt aatgtttatg aaaatatcgc
    16441 cattccttta aaagaataca ctcatttaga tgaaaatagc atacaagaac tggttttaat
    16501 gaagctaaaa atggtaggct taaacgaaag tgttttaaaa caatttccaa gcgaacttag
    16561 tggcggtatg caaaaaagag tggcaattgc tagagcttta gcacttgata gtaaattgct
    16621 ttttttagat gaacctactt caggacttga ccctcatagt agtcgtgaat ttgacgattt
    16681 ggttttagag ttaaaaaaaa gttttgattt aaatatcatt ttggttacac atgataaaga
    16741 aagtatgaaa aatttactcg atcgttttat cattttagaa aataaaaaag ttggattttg
    16801 cggtacttat gaagaattac gcctgcaaaa tgaacgactt tttaaaagat ttatggagta
    16861 aaagtggaaa atagagcaaa ttattttttt gtaggacttt ttgtttttgg agtatttttt
    16921 gcaagccttg gtttcatact ttggcttggt ggatactcta aagaagaaag ttttaagtat
    16981 tatgaaattc acacacaaga atccgttgca ggacttggca taaaagcacc cgtaaggctt
    17041 ttgggcgtgg aagtaggtag cgtagaagaa atcagcattt acaatcaaga tgaactcggc
    17101 gttaacatac gcatcaaggt caaaaataac acccctataa aagaagatac ttttgctact
    17161 ttgcaacttc aaggtatcac aggacttaaa tttgtccaac ttcaaggcgg aagtaaaaat
    17221 agcaaagatt tagtatctat acagggaaaa cttccagtca ttccttttaa agaaagtttt
    17281 ttagcaacta tagatagaca aagtgaacat attttttctt tagttaaaac ggccgatgat
    17341 aaatcaaaag aacttttaag cgaaaaaaat cttaaaaatc tagaaatcct tttgcaaaat
    17401 ctagcagaat taagtgcaaa tttaaacgct aattctaaaa atttaagcct taatctttca
    17461 aacgcaagtt taaaaatagg aaaaatggct gataatataa gccttagtgc gcaaaatttc
    17521 aactccagtc ttaaagacat aaaagaaagt acgatgattt taaaaaattt cataaaaaaa
    17581 gctgatgaaa aattaaacac ttatgatgat attaaagcat ctttgatgca aaatttagag
    17641 ctttttaaac gagttttaat tgaaagcaat attctaatag aaaatttaca aaacagccct
    17701 gctgatttga tttttaaaga aaccaaacct aaactaggac caggagaaaa ataatgctaa
    17761 agcaattatt ctgtattttg acttttattt ttatgttatg cggatgctct ttaagacacg
    17821 aaaccatcaa caaaaatgaa aatatcatat taaaagatga aggaatagat tcaaatattt
    17881 tttttaaaaa aaccggtaaa attcttaaaa ttcgcaatgc aaatgcacct ttgtatttaa
    17941 actcgcgagc tattgtttat atagataatg gttttagcaa caaatacgca cattatttct
    18001 ggggagattt accaagcaat ctttattctt ttttaatttt gtcaaaattt gaacaaagca
    18061 atatttttac aaccctactt tcttcaacaa gctctttaag tgcggattat gctcttgaaa
    18121 gcaggattaa ctcttttgag caaattctta ataacaatga aaactacgct caaatttcta
    18181 taagcgtaaa tttcataaat cttgaaaaca atcaaataat agctcataaa attttcaata
    18241 ctaaagaaaa aatagaaaaa aaagacatcc actctactta taatgctttt caaaaagcct
    18301 tgaataaaat tggcaatgag attgtttttt gggtaaattc taacttatcc taatttagga
    18361 acactttttg ctttttaaat atttagcaat atttttgaaa ggtaaacaat gaaaagtgat
    18421 ttagatatat ttaaaaaaca cttaggtgaa attcaaggcg tgaatgaatt taaagcaaat
    18481 caaatttgct ctcaaatcaa tgatgcaaat gattttatag gagcacttca agtgcttgat
    18541 atgtctttaa aaaaaataga aaaaagcatt ctagaaagaa tagatgaaaa ttcagatgat
    18601 atgcaaaaaa gaactcttga tgccacagcg tcacaactta tacaaaactg ctctttcatg
    18661 ggaacagctc tttttggaaa tattttcaat gtttatgttg gtaaaaaact ttttgaattt
    18721 gaaattgcta atccactttt aattcttcaa acaagtaatt acgaaggtgt attggcctat
    18781 atacaagata aaagagatga aataaaaatc attctatcgg agttagcaac cgcaattacc
    18841 atgggcgaaa ctatggataa tactggaatt tataactcta caatggattt taaaaattta
    18901 tttaaataag aatagtaatc gtttgttctc tttaagcaaa tataatatat tttagcttaa
    18961 agagattttc caaactctaa aagagagtta ggctacgaat aaaaaggggg agggaaatag
    19021 cctaacccaa acgagatctt aaaagatctc tttaaacta
//
LOCUS       DBBXPZ010000029        18850 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.030, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000029 DBBXPZ010000000
VERSION     DBBXPZ010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18850
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.030"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(50..1057)
                     /gene="ansA"
                     /locus_tag="ACJFD7_000818"
     CDS             complement(50..1057)
                     /gene="ansA"
                     /locus_tag="ACJFD7_000818"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004067 - asparaginase activity [Evidence
                     IEA];
                     GO_process: GO:0006528 - asparagine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II asparaginase"
                     /protein_id="HGG0859654.1"
                     /translation="MGVCMKKAKSRIAILGTGGTIAGFIDSTIATTGYTAGAIDIDVL
                     IKAVPQIRDLADISWEQIANIDSSNMCDEIWLRLAKKIAKLFAEGIDGVVITHGTDTM
                     EETAYFLNLTIKSDKPVVLVGAMRPSTAISADGPKNLYNAVALVANKEAKNKGVMVAI
                     NDKILSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNVTKAHTKNAPFDVSKL
                     TSLPKVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIHKNQKDVLKELLKKGL
                     KVVVSSRVVAGCVAVSDSDEKLGFISAEDLNPQKARVLLILALTKTSDPKKIQEYFLK
                     Y"
     gene            complement(1141..2712)
                     /gene="recJ"
                     /locus_tag="ACJFD7_000819"
     CDS             complement(1141..2712)
                     /gene="recJ"
                     /locus_tag="ACJFD7_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008409 - 5'-3' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HGG0859655.1"
                     /translation="MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRI
                     KEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIIN
                     ELDVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDF
                     PEIEICGAQVAWYLIAALKEVCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGI
                     DHINKSKRAAFRAIKHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFN
                     KALEYLEQIVSFNESRKDEEKQLFEDSLNQIDENDSCIVVSGLNWHEGVLGIVASRLA
                     KHFNKPAFVFSQNEEHLKGSARSVGKIDILALISKTNSILSNYGGHKGAAGISLNSEN
                     FEQFKNKIKKECSQISESEFLDTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFF
                     VLENLCVKNKKLLGKDEKHLKLVLTKENKTIEALFFNFDKEPELNQNISLLGSISKNE
                     FRGMVTPQFVVKEIL"
     gene            complement(2699..4330)
                     /gene="pyrG"
                     /locus_tag="ACJFD7_000820"
     CDS             complement(2699..4330)
                     /gene="pyrG"
                     /locus_tag="ACJFD7_000820"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HGG0859656.1"
                     /translation="MKQTKYIFVTGGVLSSLGKGIAAASIATLLKNSGLKVSILKADP
                     YINVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFLDESLSQDNNFTTGRVYQSVIE
                     KERRGEYLGKTIQVIPHIVGEIKDRIKKAGEGKDILIVEIGGTVGDIEGLPFLEAIRA
                     LRLEVGKNNAMNIHLTLVPFIKAAGELKTKPTQHSVGELRRIGISPDMIICRSEKALD
                     RDLKDKIAISCGVEKNCVIESVDAASIYQIPLNFLKQDILSPIAEILDLKNLKPNMEN
                     WDSLVKRVIAPSNEVKIAFVGKYVDLKESYKSLTEAIIHAGAALDTKVELKWVDSEKL
                     ENMESSEVFKDVSGILVAGGFGYRGVEGKIKAIQYARENKIPFLGICLGMQLALVEFA
                     RNVLKLKDANSSEFNEKCQNPVVYLIDEFMDTNGEKQIRTAKTPLGGTMRLGAYKCDI
                     KEKSLLAKVYNEVKSVKERHRHRYEANPKYRADFEKHGLIVSGESKGLIEAVELNCHP
                     FFLAVQFHPEFTSRLEHVNPVICSFIKAAINYEDN"
     gene            4450..5073
                     /gene="thyX"
                     /locus_tag="ACJFD7_000821"
     CDS             4450..5073
                     /gene="thyX"
                     /locus_tag="ACJFD7_000821"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050797 - thymidylate synthase (FAD)
                     activity [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HGG0859657.1"
                     /translation="MQITLLFHTPLSVCSHATRTCWQSFEKGDCGGEKDKELIDRVGN
                     KFKHASTLEHLNYTFYIQGISRACLQEVARHRHTSPSVKSTRYTLKELRNEGEFKIGD
                     FENASRYLVLCGNEEVDNASIKALENLRTILQKSISLDIAKYCLPESYKTELTLTINA
                     RSLQNFISLRSSKSALWEIRNLANALFEALPQEHKFIFEHCLHKDIE"
     gene            5193..6578
                     /locus_tag="ACJFD7_000822"
     CDS             5193..6578
                     /locus_tag="ACJFD7_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HGG0859658.1"
                     /translation="MDKQFFQDFLMLSQAHTIATLAMLCVVFYALKKMRDIKINFSLR
                     MLFALLMGLGFGFVLQYLANFPDTEEASNILWYSETKHWFAFVSSVFVAFIKMLVVPL
                     VSICIIKVIIEIDKNIKISSLLGISLFWILFSTAIAATLGIFLGYSFDLGSNFAIHEG
                     DKQIREIQTFSNIILGLIPSNIITAINKENIIAIVIFSFFIGISAKKISKKEEYEQAF
                     KSFHNFILTFYNIMMNMTATVIRFMPYAVVCMMANVLLSNGFEAIKTAGLFIMLIYIA
                     MLIMFGVHFLLLASQGLNPIKYAKKAFPVWLFAFSSRSSLGTLPMTTSTLQNKFGVNS
                     AIANFVASIGTTTGLNGCAGYFPALAAVFVAFATHTHIDFTFALMIVLVAVIGSLGIA
                     GVPGSATMAASIMLAGIGFGNNFVMLSLILAIDPIIDMARTASNVSGAMTSALCTAKN
                     LKALDKKIYNS"
     gene            complement(6617..8986)
                     /gene="nrdA"
                     /locus_tag="ACJFD7_000823"
     CDS             complement(6617..8986)
                     /gene="nrdA"
                     /locus_tag="ACJFD7_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HGG0859659.1"
                     /translation="MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQ
                     FRDGISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLREYF
                     EKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIEL
                     PQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIG
                     STPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN
                     DIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFM
                     KRVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLN
                     YFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELH
                     FDEEQKVVIDGGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYT
                     KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWG
                     SNEHLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKAL
                     TLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKW
                     FEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSL
                     DKASGGYLNEIYQLAWELGVKSTYYLRSESPDSEKVNVADRSIECEGCQ"
     gene            complement(9002..10330)
                     /gene="purB"
                     /locus_tag="ACJFD7_000824"
     CDS             complement(9002..10330)
                     /gene="purB"
                     /locus_tag="ACJFD7_000824"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HGG0859660.1"
                     /translation="MVERYSREIMAKKWDMQAKYDAWLKVELAAVKAWNKLGLINDTD
                     CEKILKNAKFDIARIDEIEKTTKHDVIAFLTSVSESLGEESRFVHYAMTSSDCIDTAV
                     ALQIKESLELILEDVSLLLEVIKKRALEHKNTLMVGRSHGIHGEPITFGLVLAIWYDE
                     ILHAKELLEHAKEVISYGKISGAMGNFAHAPLEFEEEVCKNLGLKAAPVSNQVIQRDR
                     YAQVISAIAILASSCEQIAVAIRHFQRTEVYEAEEYFSVGQKGSSAMPHKRNPVLSEN
                     ITGLCRVLRSFVTPALENVALWHERDISHSSVERFILPDAFITADFMLMRLTNLIDKL
                     LVYPENMMKNLNLTGGLVFSGRVLLELPFKGISREEAYKIVQRNAMKVWADLQNGKAA
                     INEKNESLFLLALLSDEDLRKSLSEEDVRKCFDYNYYTKNVDVIFKRTFK"
     gene            10408..11310
                     /locus_tag="ACJFD7_000825"
     CDS             10408..11310
                     /locus_tag="ACJFD7_000825"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HGG0859661.1"
                     /translation="MAYIKIKLSNNGKKAFQVLMENLKISINEAQKLIDKKRLFCDGI
                     LVEEKNEILNGLVELIVYENNPKGVEIVFENEDFAILEKESGILSHPNGRHCKYSLSD
                     EIWHLWGKEACVAHRLDKETSGLILVAKNKKAQIDLKALFEKKLVQKEYLALANGKIE
                     ENFIIDKAINLAKNYDDVKTRMQICKEGKQAITEFEILEYFPKINATLLLCKPLTGRQ
                     HQIRVHLHYKNHTILGDPLYGLSKEQIESILDEKLTPKERLKLTGALRLCLHSYRLKF
                     QYKNQNFNINSKINIKEIFNNSIK"
     gene            11423..12301
                     /locus_tag="ACJFD7_000826"
     CDS             11423..12301
                     /locus_tag="ACJFD7_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HGG0859662.1"
                     /translation="MKFVNFIQGQKPNLGVLNSSGKIVSFDDLGIETNDMNEFIIHFD
                     KFKHKLTDLDSKIAYEIPQENYLAPIIEPRQDIICLGINFLDHAKESAKFKGEKFEER
                     EYPVYFGKRCNQATPPFGDIPLHADVTSQLDYECELAFILSKDAYKIKTKDAKDYIFG
                     YTIINEISARELQKRHKQFYRAKSLEGSTIMGPYITSVDEISYPPKLQLQSYVNDELR
                     QNSNTQLFIFDIAYVLEELSAGMLLKAGSIISMGTPSGVGMGLNPPTFLKSGDKVRCV
                     IENLGELCNKIKNINY"
     gene            12365..13279
                     /locus_tag="ACJFD7_000827"
     CDS             12365..13279
                     /locus_tag="ACJFD7_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HGG0859663.1"
                     /translation="MKKIIMILCLSYANIVFAVDMITPIPNSISYDKEKAKLGKSLYM
                     DKSLSKDGKVSCNTCHRLDQHGVDGLEFSIGVDNQLDKPFNTPTTFNSVFNFVQFWNG
                     RAKDLTEQAMGPFFNPKEMGLSPELLLQKVNSNENYVKTFKKLYGEVTVENIALAVAE
                     FEKTLITPNSPFDRYLSGDQNAISTQAKKGYEDFKANGCISCHQGQNIGGNMFQKIGI
                     FEEYPNQEDLGRYEITKREADKMVFKVPSLRNIAKTAPYFHDGSIPTLDACVQFMAYY
                     QLGKFLDQETVDNIVAFLESLTGEYHDK"
     gene            13269..15047
                     /locus_tag="ACJFD7_000828"
     CDS             13269..15047
                     /locus_tag="ACJFD7_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098561 - methyl accepting chemotaxis
                     protein complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HGG0859664.1"
                     /translation="MTNKKSSFLIKFIILSTLVLTFILVLLAIIFNNYSSSKNNKDLI
                     NIVQQLEISDEKINSIFQNSFNFINYDPSVQAIKKMQENFAKLKTFGIDISKAEEIFN
                     AKLIQLNYFKSANSIAVNSKLYLFELAKNYFEELEQNHETNKNNYKTMNSMLSVLSTE
                     SILQKTTLNQLNNLMKEIKNDAKNENLQLFLKHYKMIVKQISIMQDNSSIYENNSLMK
                     ELKQLDTFTQNTIEQSNLFKFYIALAVFGITIVLFVFFILLTLKKVIIPIHTLEKLSA
                     NLASKEANLHSRLNIDPKSELGQSAQYINSFISTVQNSIIEAIENAKSSHQNSQKLKN
                     NSMMLENSSNSQHEQIQGVKEITHVLDDHINLAGNLAQESIENMQDMHILMDKVELTL
                     SELVNLINENNEKEQNIVANMDNLTQSADNIIEITNSIKDIADQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVGQLADKTSKSLLNINATVNTIVQQINDNKALMDLIHDSMKETS
                     SKTNDLQQELVNSMHKLESSIESTQTMKDKSMEVKDKMLILGTNIDKVNELANSVKDL
                     SCEINNISQNVLNGASKLSEKLSSFQ"
     gene            15153..15320
                     /gene="dba"
                     /locus_tag="ACJFD7_000829"
     CDS             15153..15320
                     /gene="dba"
                     /locus_tag="ACJFD7_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein Dba"
                     /protein_id="HGG0859665.1"
                     /translation="MEFLELLLVLIALILIIKKPEKENLAFGLVMVAWLLMVFFYVGH
                     KTGALLTIMNL"
     gene            15332..16858
                     /gene="dsbI"
                     /locus_tag="ACJFD7_000830"
     CDS             15332..16858
                     /gene="dsbI"
                     /locus_tag="ACJFD7_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbI"
                     /protein_id="HGG0859666.1"
                     /translation="MNEINKTKNFYTLMCLAGFLIILLPVGIANLIFGYMLGDSPCTL
                     CWGQREAMIFIGVMALFIVRYGMKGKYLAALLIMTAVGLYQSFAHYGNHAHRDLDQGF
                     GLAVFGIHTYFWAEVVFWAVVLLLGVIFAFAPKFNAFEAELNGEKFRKYTKFSFAAVL
                     ISAIIVASNVFQAFVSTGIPPYVGQGDPVRFSLNPKYIIWSKEGWNGLWQNISFLGKR
                     DVKAPDYAFAPASEKLGIKFDNDINNAPFAKINDELKITNEQTINFDKAINTLDYINN
                     EFVASSKWDVAFLDNNFSVKEGFELDPYFSASIDPIIGIIPYMNDKFILMGSNKSFLR
                     FAKNPNASEEDIAKQYADFVKGNDKFKGQGESLGRGRLDTVRAKFNHVASMTTDGNYL
                     YLATVPNNKDAKTFVISKVSLKDRVLSGEFTPKANLKEGKTLGDLYVTSMTFKDGEIY
                     ALSKNHNVIAVIDPVKEEVVKTIAFPSSITNARSIFFKDGKINILSYQDGANKLYTLN
                     "
     gene            complement(16879..17553)
                     /gene="queC"
                     /locus_tag="ACJFD7_000831"
     CDS             complement(16879..17553)
                     /gene="queC"
                     /locus_tag="ACJFD7_000831"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HGG0859667.1"
                     /translation="MSKKALCIISGGMDSTLCAYLAKKEGYEIIALHFDYEQRTQEKE
                     KECFKQICKALKVEKSYILDVSFIKDIGGNALTDKSIDIPKNELCTSDTPPITYVPFR
                     NGIFLSIAGSLAEKENCESIFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVC
                     IKTPLVRLNKAKIVELALKENVPLELTWSCYESEDEACGECDSCLLRLRGFEKAGFKD
                     KIKYKS"
     gene            17630..>18850
                     /locus_tag="ACJFD7_000832"
     CDS             17630..>18850
                     /locus_tag="ACJFD7_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HGG0859668.1"
                     /translation="MINIKLIEHIFKAASISRWNDYPRMANLVELDKQAHKFIIAYFI
                     AKMEKDVDMRVIIEGGIFEFLSRVVVTDIRPDVYHEIVRQKKAEVNAWVLSKIEPMIE
                     DIEDGEFLKRFEAYLNGNAYAKERLILKAASYFATRWEFNIVYQTSAFLNDIDEIKNK
                     VEEELEDYYELIGARKIALNQKIAKIIDLSGRLRFQKRWAQTPRIPETAVLGHMLVVA
                     ILGYFYSLKIKACDKRLENNFYCALFHDLPESLTRDIISPVKYGIDGLHDIINDYEMK
                     LINERILPFVPEGLRAEFSYILGIREGRNGESNFVKNEFENRTYKNAKIELCSGSLSS
                     FNENEFGAIDGKALKYCDKIAAYIEAGLSISYGVKSKELESGFLGMYEFFKENPTIDG
                     VNFFEICESLREYFK"
BASE COUNT         6491 a         3297 c         2676 g         6386 t
ORIGIN      
        1 ttgacttagg gaagataagt tccctaagtt tagaaatatt taaaaaattt taatatttta
       61 aaaaatactc ttgaattttt ttaggatcac ttgtttttgt aagtgctaat ataagcaaaa
      121 ctcttgcttt ttgaggattt aaatcttcag cactaataaa acctaatttt tcatctgaat
      181 cactcacagc aacacaacct gctacaaccc ttgaacttac aacaacctta agcccttttt
      241 ttaaaagctc ttttaaaaca tctttttgat ttttgtgtat acttcctgct ccacttcctg
      301 caacaactat gcccttagtt ccatgttcaa ataaagcttt tgcagcgaca ccactaccat
      361 catttgaata gctataaaga atatctactt ttggcaaact tgtgagtttg cttacatcaa
      421 aaggagcgtt ttttgtgtga gctttagtaa cattattata gaaaaagact ttaccatcta
      481 ctatataacc caaatcccca aaatcaggag aagagaaagc atcaacattt aaactatgag
      541 tttttactac gcctctagcg cttaaaattt tatcatttat agctaccata acacccttat
      601 tcttagcttc tttattggca actaatgcca ctgcattata aagatttttc ggaccatccg
      661 cacttatagc agttgatgga cgcatagcgc caactagaac tacgggctta tcacttttaa
      721 tggttaaatt taaaaaataa gcagtttctt ccatagtatc ggtaccatga gttatcacca
      781 caccgtctat cccctcagca aaaagcttag caattttttt agcaagcctt aaccaaattt
      841 catcacacat atttgaacta tcaatatttg ctatttgctc ccaactaata tctgctaaat
      901 ctctaatttg cggaactgct ttaattaata catctatatc aatggctccg gccgtatatc
      961 ctgttgtagc aatagtgcta tcaatgaagc ctgctatcgt tccgcctgtt cctaaaatag
     1021 caatccttga tttagctttt ttcatacata ctcctataaa aagacaacat ataaataatt
     1081 ttttaatctc ttgtatatta attttttaat gttattaatg caaattataa gtaaaaattt
     1141 ttataaaatc tctttaacaa caaactgtgg agttaccatt cccctaaatt cattcttaga
     1201 aatacttcca agcaaagaaa tattttgatt caattctggc tctttatcaa aattaaaaaa
     1261 taaagcttct atggttttat tttccttagt taaaacaagc tttaagtgtt tttcatcttt
     1321 acctagaagt tttttatttt ttacacaaag attttctaaa acaaaaaaag gtcgtggatt
     1381 tttatgtcca aaaggttcaa aagattctaa aatttcaagc atttcaaaat caatttcgct
     1441 aggttctaag attcctaaaa tttcatctgt atccaaaaat tcactttcag aaatttgcga
     1501 acattctttt ttgattttat ttttaaattg ttcaaaattt tcagagttta aactgattcc
     1561 agcagcacct ttatgaccac cataattgct taatatagaa tttgtcttag aaattaaagc
     1621 taaaatatca atcttgccaa cacttcttgc gctgcctttt aagtgttctt cattttgaga
     1681 aaatacaaaa gcaggtttat taaaatgttt agctaaacga cttgccacaa tccctaaaac
     1741 accttcatgc caatttaaac ccgataccac aatacaagaa tcgttttcat cgatttgatt
     1801 taaactatct tcaaaaagct gtttttcttc atctttacga ctttcattaa aactaacaat
     1861 ttgctctaga tattctaaag ctttattaaa atctttagtg tgtaaaaatt cataagaaat
     1921 acttgcatca tccattcttc cagcactatt tataagcgga gcaattaaaa atcctatatt
     1981 atcaagagca aatttatcct tttgataata atgcttaata gccctaaaag cagccctttt
     2041 agatttgtta atatgatcta tgccacgcct tactaaagca cgatttaaat ctctaagttc
     2101 catcatatct gcaacaattg caatcgccaa aagttctaaa aatttacaca tgtcatattt
     2161 aagcttgcac acctctttta aagccgctat caaataccat gcgacttgag ctccacaaat
     2221 ttcaatttct ggaaaatcac aatctttttg ctttggattg ataatggcaa aagcatcagg
     2281 taaaacatct tgaggcatat gatgatcagt gataatcaaa tctatatttt tttctttaca
     2341 gagtttggct gcttcaagag cagctattcc attatctact gttattatta aatttacatc
     2401 aagttcgttg atgatctcag catttaatcc atatccatct ttaaaacgat ttggaattct
     2461 tataatataa tcaaaaccta tatcatcgaa aaattctgcc ataataacac aagaaatgat
     2521 tccatcaaca tcataatctc ctactatggc gactttctca tttttttcta cagcttcttt
     2581 gatgcgatta gctgctttat atgcatcctt taaacagcat ggcaaaggca gatcacaaag
     2641 tttggtatgc aaatcttttt caaagcgtga agccaaaatt tttttaattt catttttatt
     2701 aattatcttc atagtttata gctgccttga taaaactgca aatcacagga ttaacatgct
     2761 caagtcttga tgtaaattct ggatgaaact gcacagccaa gaaaaaagga tgacagttaa
     2821 gctcaactgc ttcaatcaat cctttgcttt caccacttac aatcaaaccg tgtttttcaa
     2881 aatctgctct atattttgga tttgcttcat agcgatgacg atggcgttct tttacactct
     2941 ttacttcatt ataaacctta gccaaaaggg atttttcctt gatatcacat ttataagccc
     3001 ctaaacgcat agttccacct aaaggagttt ttgcagtacg aatttgtttt tctccatttg
     3061 tatccataaa ttcatcaatc aaataaacca caggattttg gcatttttca ttaaattcac
     3121 ttgaatttgc atctttaagt tttaatacat ttctagcaaa ttccaccaaa gcaagctgca
     3181 tacctaaaca aattcctaaa aaaggaattt tattttctct tgcgtattga atggctttta
     3241 tcttaccttc tacaccacga tatccaaatc ccccagcaac caaaattcca ctcacatctt
     3301 taaatacttc agaactttcc atattttcaa gtttttcact atctacccat tttaactcca
     3361 ctttagtatc tagggctgca cctgcgtgta taatagcttc agtaaggctt ttataacttt
     3421 cttttaaatc cacatatttg cctacaaaag cgattttaac ttcattgctt ggagctataa
     3481 ctctttttac caaagagtcc caattttcca tattaggttt taaatttttc aaatccaaaa
     3541 tttcagcaat agggcttaaa atatcttgct ttaaaaaatt aagtggaatt tgataaatac
     3601 tagccgcatc aacactttct atcacgcaat ttttttccac cccgcaagaa atagcaattt
     3661 tatcttttaa atctctatca agagcttttt cactacgaca aataatcata tcaggactaa
     3721 tgcctatgcg ccttaactcg cctacactat gttgagttgg ctttgttttt aattcccctg
     3781 cagccttaat aaaaggtact agagtaagat gaatattcat agcattattt ttacccactt
     3841 ccaaacgcaa agcacgaata gcttctaaaa aaggcaagcc ttctatatcc ccaacagttc
     3901 cgcctatttc aacgataagt atatctttgc cttctcctgc ttttttaatg cgatctttga
     3961 tttctcctac tatatgaggg ataacttgaa tggttttgcc aagatattct ccacgccttt
     4021 ctttttcaat cacactttga taaacccgtc ctgtagtgaa gttattatct tgagataaac
     4081 tctcatccaa aaaacgctca taatgcccca aatcaagatc cgtttctgct ccatcatcag
     4141 ttacaaaaac ctctccatgc tcaaaaggac tcatagtgcc tggatcaaca ttgatataag
     4201 gatcagcttt taaaatactc actttaagcc ctgaattttt taaaagtgtt gcgatagaag
     4261 cagcggctat ccctttaccc aaagaactta aaactccacc tgttacaaaa atatattttg
     4321 tttgtttcat tgataataag ccttattttt ttatctaatt atagcttgat aaaacttttt
     4381 atttcattag aattttaagt aaaaaatgca agaattacaa aaaatatttt tatcaaaaaa
     4441 ggaataagca tgcaaatcac tttacttttt cacactccat tatctgtttg ttctcatgca
     4501 acaagaactt gttggcaaag ctttgaaaaa ggcgattgcg gtggcgaaaa agataaagaa
     4561 cttatcgatc gcgtgggcaa caaattcaaa cacgcttcaa ccttagaaca tctaaactat
     4621 actttttata tacaaggaat ttcaagagct tgcttacaag aagtcgcaag acaccgtcac
     4681 actagtccta gtgtaaaaag cacgcgttat accttaaaag aacttcgcaa tgaaggtgag
     4741 tttaaaatag gagattttga aaatgcaagc cgttatcttg tgctttgcgg taatgaagag
     4801 gttgataacg caagcattaa agccttagaa aatttacgca ctattttaca aaaaagcatt
     4861 agtctagata tagccaaata ctgcttacca gaaagctata aaaccgaact tacactaacg
     4921 attaatgcaa gaagtttaca aaatttcatt tctttgcgta gttcaaaatc agctctttgg
     4981 gagattagaa atttagcaaa tgctttattt gaagccttac cacaagaaca caaatttata
     5041 tttgaacatt gcctacataa agatatagaa taaatcatac taattttatc ttatttaaaa
     5101 tatttttatg ttaccattta taaaatcaag ctttatgcaa gtatattttc atataccttg
     5161 tgcttgatta tagtttctta taaggacttt ttatggataa acaatttttt caagattttc
     5221 taatgctttc acaagctcat actatagcta ctcttgctat gctttgtgtt gttttttacg
     5281 cattaaaaaa aatgcgggat ataaaaatca atttttctct tcgcatgcta tttgcgcttt
     5341 taatgggttt ggggtttggt tttgttttgc aatatttggc aaattttcca gatactgaag
     5401 aagcaagtaa tattctttgg tatagtgaaa caaaacattg gtttgcattt gtaagttctg
     5461 tttttgtagc ttttataaaa atgctagttg ttcctcttgt aagcatttgc attataaaag
     5521 taattataga aattgataaa aatatcaaaa tatcctcctt gcttggaata agtctttttt
     5581 ggatactctt tagcacagcc atagctgcaa ccttgggtat atttttaggt tatagttttg
     5641 atttaggaag taattttgcc atacatgaag gagataaaca aattcgcgaa attcaaactt
     5701 tttcaaatat tatactaggg ctaataccta gcaacatcat tacagctatt aataaagaaa
     5761 atattatagc tattgtcatt ttttcttttt ttataggaat tagtgctaaa aaaatttcta
     5821 aaaaagaaga gtatgaacaa gcctttaaaa gttttcataa ttttatccta accttttata
     5881 atattatgat gaacatgact gctacagtca ttagatttat gccttatgct gtagtttgta
     5941 tgatggctaa tgtgctttta agcaatggtt ttgaagctat caaaacagct ggacttttta
     6001 taatgcttat ttatatagct atgttaataa tgttcggggt gcatttttta cttcttgctt
     6061 cacaagggct aaaccctata aaatatgcaa aaaaagcatt tcctgtatgg ttatttgcat
     6121 ttagctcaag atcttctttg ggcactttgc ctatgactac ttcaactttg caaaataaat
     6181 ttggagttaa ttcagctata gctaattttg tagcatctat aggtacaaca acaggactta
     6241 atggttgtgc gggatatttt ccagctttag cggcagtttt tgtagctttt gctacacata
     6301 cacatattga ttttacattt gctttaatga tagttttggt agctgttatt ggatccttgg
     6361 gtatagctgg agtacctgga agtgcaacta tggcagcttc tattatgcta gcagggattg
     6421 gatttggtaa taattttgtc atgctaagtt tgattttagc tatagatcct attatagata
     6481 tggcaagaac agcaagtaat gtctcaggag ctatgacttc ggcactttgt actgcaaaaa
     6541 atctaaaagc cctagataaa aaaatttaca attcttaatc tcttaaaacc caatattttt
     6601 cattgggttt tagtatttat tggcaacctt cacattctat gctacgatct gcaacattga
     6661 ctttttcact atcagggctt tcgcttctta gataataagt agattttact ccaagctccc
     6721 aagcgagttg ataaatttca tttaaatatc ccccacttgc tttatcaagc gataaaaaga
     6781 tatttaaact ctgcccttga tcgatccatt taccacgcac agcagcagcc tttacaagaa
     6841 ttttttgatc aagttcgtag gctggagtat agtattgcca agtatcaagg cttaaatttg
     6901 gcacaacaac aggtatcata ccacttaaat tttgttcaaa ccactttctt ttgtaaacag
     6961 gttctatagt ctgcgtagta cccaccaaaa tagaaataga agaagtaggt gcaatagcca
     7021 tcaaataacc atttctcata ccatcttttt taactttttc tctaagttta acccagtcgc
     7081 attcactttg atcaaataag ccctctctta aagttaaagc tttagcctta ggacttgcta
     7141 catcaatagg aaaaatcccc ttgctccaat ttgatccttc aaaatcttca taagaacctt
     7201 tttcaagagc taaatttgaa ctcgcattaa tagcctcaaa gctaatttgt tccataatct
     7261 catcgatttt atttaaatgc tcattgcttc cccaataaat cttagcctca gcaagcattt
     7321 gtgcctcacc catgactcca agacctatgg cgcgagattt taaatttgta tcttttactt
     7381 ttctatgagg ataaaaattt aaatctatca cattatcaag catacgaata gcagttggca
     7441 caacacgctc tatatcttct ttagtataca ctttgctaag atttatactt gctagattac
     7501 aaacggctgt ttttccatca tttttatatt tttctactat ataaacttta ttaccatcaa
     7561 tactatctaa agttgagatt tttttggctg gtttttcata tcccccatcg atcacaactt
     7621 tttgttcttc atcaaaatga agttcatctc cattttcaaa aactacttta atttgataat
     7681 aatttggctc ggtattttga aaaatttcag tacataaatt tgaacttcta ataattccta
     7741 catgagcatt tggatttgct ctattagcac tatccttaaa acataaaaat ggcaagcctg
     7801 tttcaaaata atttagcaaa attttcttcc aaagctcttt agcttctacg atttctttgg
     7861 taatgctttc atctttttca tattcttcat agcgtttttc aaaagcttca ccatataaat
     7921 cacacaaatc cgccgtatcc gcaggatcaa aaagagtcca tttatcatta gctcttactc
     7981 tcttcataaa aagatcattg atccataaag cagggaaaag ttcatgagca cggcgtcttt
     8041 cttcacctga atttttacgc aaatcaataa aatcacttat atccatgtgc caaggttcta
     8101 tataaacagc tatagctcct tttctggttc ctagctgatc tactgccacg gcaatatcat
     8161 tagtaatttt caagaaaggt ataatccctc ctgcggcatt tttatgccca tctatgcttc
     8221 cacccatagc acgcacttta gaccaatccc aacctatacc gccaccaaat ttagaaagca
     8281 aagccatttc ttggtaagaa tcaaaaatac cttcaatatt atcaggggtt gatcctatat
     8341 aacaagaact aagctgatgg cgcgttgttc ttgcattaga taaagtcgga gttgcaagca
     8401 tgagttcaaa tttagaaatt aaatcataaa atttcttcgc ccattcttga ggattaaatt
     8461 cattctgcgc taaaaacatc gcaatggcca taaacatttg ttgaggaagt tctataggca
     8521 tacctttact atctttaatc aagtatctat catataaagt tttaatacca agataagtaa
     8581 attgcatatc gcgttcaggt ttaatataag catttaaatc atctaaatcg tatttttctt
     8641 taagaccaag taagattctt ccttcttttt cgcccttttc aaaatactca cgcaaatgat
     8701 tatagcgatt cataccatta acttttttat ataaatcaaa taaaaaaagt ctagctgcaa
     8761 caaaggtcca atttggacaa tcaatatcta tcttatctac tgcagtttta attaaagttt
     8821 tttgaatttc ttcagttgaa attccatcac gaaattgaat ctttgcatcg agttcaagtt
     8881 cgcttaaatt cacaccttct aaatctttta cagcatcaga ggtgcatttt ttgatcttag
     8941 aaacatccaa ttcttctgta cgaccatttc ttttaataac tttcattgcc ttccttgctt
     9001 tttatttaaa tgttctttta aaaattacat caacattttt tgtatagtag ttataatcga
     9061 aacattttct tacatcctct tcgctcaaac tttttcttaa atcttcatcg cttaaaagcg
     9121 ctaacaaaaa caaactttca tttttttcat tgatagcagc cttaccattt tgcaaatctg
     9181 cccaaacttt catagcgttt ctttgaacta ttttataagc ttcttcacga ctaatgcctt
     9241 taaatggaag ctctaaaagc accctccctg aaaatacaag cccgcctgta agatttaaat
     9301 ttttcatcat attttcagga taaactaaaa gcttatcaat caaatttgta agacgcataa
     9361 gcataaaatc agccgtgata aaagcatcag gcaaaataaa tctttcaaca ctagaatgag
     9421 atatatctct ttcatgccaa agtgcaacat tttctaaagc tggagttaca aaagatctaa
     9481 gcacacgaca aagccctgtg atattttcac ttaaaacagg atttctttta tgtggcatag
     9541 ctgaacttcc tttttgtcct acactaaaat actcttcagc ctcataaact tcagttcttt
     9601 gaaaatgtct tatcgctaca gcgatttgct cacaacttga agctaaaatt gcaatagcag
     9661 aaataacttg agcataacga tctctttgga tcacttgatt tgaaacaggg gcagctttaa
     9721 gacctaaatt tttacaaact tcttcttcaa attctaaagg agcatgagca aaatttccca
     9781 ttgcaccact gatttttcca tagcttatca cttcttttgc atgttctaaa agctcttttg
     9841 catgcaaaat ttcatcatac caaatagcta acactaaacc aaaagtgata ggctctccat
     9901 gaattccatg acttcttcct accattaagg tatttttatg ctccaaagca cgctttttga
     9961 tcacttctaa aagcaaagaa acatcttcta aaataagctc caaactctct tttatctgta
    10021 aagcaacagc cgtatctata caatcagaac ttgtcattgc ataatgcaca aaacgactct
    10081 cttctcccaa actttcactt acacttgtaa gaaaagcgat aacatcgtgt tttgtggttt
    10141 tttctatttc gtctattctt gcaatatcaa attttgcatt tttaagaatt ttttcgcagt
    10201 ctgtgtcatt aatgagaccg agtttattcc aagcttttac agcggctaat tctactttta
    10261 accacgcatc gtattttgct tgcatgtccc attttttagc catgatttct ctgctatatc
    10321 tttcaaccat ctttgaaacc tttttagcta taattttata ttttaaaaaa cagaaattat
    10381 atcaaattat cctaagaaag ttattaaatg gcttacataa aaataaaact ctcaaataat
    10441 ggaaaaaagg catttcaagt ccttatggaa aatttaaaaa ttagcataaa tgaagcacaa
    10501 aaactcatag acaaaaaaag acttttttgt gatggaattt tagtagaaga aaagaatgaa
    10561 attttaaatg gtttagtaga gcttatagtc tatgaaaaca atcccaaagg agtagaaatt
    10621 gtctttgaaa atgaagactt tgccatactt gaaaaagaaa gtgggatctt aagtcatcca
    10681 aatggtagac attgtaaata cagtcttagt gatgaaattt ggcatctttg gggaaaagaa
    10741 gcttgcgtag cacacagact tgataaagaa acgagcggac ttatacttgt agccaaaaat
    10801 aaaaaagctc aaattgatct taaagctttg tttgaaaaaa aactggttca aaaagaatac
    10861 cttgctctag ctaacggaaa aatagaagaa aattttataa ttgataaagc cataaattta
    10921 gccaaaaact acgatgatgt aaaaacaagg atgcaaattt gtaaggaagg aaaacaagct
    10981 atcactgagt ttgaaatttt agaatacttt cctaaaatca acgctactct tttactctgc
    11041 aaacccttaa caggcagaca acaccaaata agagtgcatt tacactataa aaaccatacc
    11101 attttaggcg atccacttta tgggcttagc aaagaacaaa tcgaaagtat tttagatgaa
    11161 aaattaaccc ccaaagaacg cttaaaactt acaggtgcct tgcgtttgtg tttgcattct
    11221 tatcgtttga aatttcaata taaaaatcaa aattttaata tcaactcaaa aataaacata
    11281 aaagaaattt tcaacaattc tataaaataa aatgatgttt cactacgcta caatcaatca
    11341 cttttttacc aaattttaaa acaaaaaaat aattcttgct aaaactttaa gtataattaa
    11401 ataaaaaagc gagattttcc aaatgaaatt tgttaatttt atacagggtc aaaaacccaa
    11461 tctaggagta ctaaattcta gtggaaaaat tgtaagtttt gatgatcttg gcattgaaac
    11521 taacgatatg aatgaattta ttatccattt tgataaattt aaacacaaac ttacagactt
    11581 ggattctaaa atagcctatg aaattcctca agaaaattat ctagccccta ttatagaacc
    11641 tcgtcaagat attatatgtc ttgggattaa ttttttagat catgccaaag aatctgccaa
    11701 atttaagggt gaaaaatttg aagaaagaga atatcctgta tattttggaa aacgttgcaa
    11761 tcaagctacg ccaccttttg gcgatatacc tttacatgca gatgtaactt ctcagcttga
    11821 ttatgaatgt gagcttgcat ttattttaag taaagatgct tataaaatca aaactaaaga
    11881 tgcaaaagat tatatctttg gctatactat tatcaatgaa atttcagctc gcgaacttca
    11941 aaaacgccac aaacaattct accgagcaaa aagtcttgaa ggtagcacta taatgggacc
    12001 ttatatcaca agcgtagatg aaatttctta tcctcctaaa ctccaacttc aaagctatgt
    12061 caatgatgaa ctacgccaaa actctaacac tcaattgttt atttttgata ttgcttatgt
    12121 cttagaagaa cttagtgcag gcatgctttt aaaagctgga agtattatat ctatgggaac
    12181 tcctagtgga gtaggtatgg ggttaaatcc acctactttt ttaaaatcag gagataaagt
    12241 acgttgcgtt atagaaaatt taggagaact ttgtaataaa ataaaaaata tcaattatta
    12301 aataatttac taaaattata ctataatggc attttaaaaa cttaaattaa ggcagaaatt
    12361 tatcatgaaa aaaataataa tgattttatg tttatcttat gcaaatatag tctttgcagt
    12421 agatatgata acccctattc caaattccat ctcttatgat aaagaaaaag ctaaacttgg
    12481 aaaaagtctt tatatggata aaagtttatc caaagatgga aaagtttcgt gcaatacttg
    12541 ccataggctt gatcaacacg gcgttgatgg acttgaattt tcaataggag ttgataatca
    12601 actcgataaa ccctttaaca ctcctacaac ctttaattct gtatttaatt ttgtgcaatt
    12661 ttggaatggc agagctaaag atttaacaga acaagctatg ggaccttttt tcaatccaaa
    12721 agaaatgggg ctaagtcctg aacttctttt acaaaaagtt aattcaaatg aaaattatgt
    12781 aaaaactttt aaaaaacttt atggagaagt tacggtagaa aacatagccc ttgcagttgc
    12841 tgaatttgaa aaaaccttaa tcaccccaaa ttctcctttt gatcgctatc ttagcgggga
    12901 tcaaaatgct atttcaactc aagctaaaaa aggttatgaa gattttaaag ctaatggctg
    12961 catctcttgt catcaaggtc aaaatatagg tgggaatatg tttcaaaaaa tcggtatttt
    13021 tgaagaatac ccaaaccaag aagatttagg gcgttatgaa atcacaaaaa gagaagctga
    13081 taaaatggta tttaaagttc ctagtcttag aaatatagcc aaaaccgcgc cttattttca
    13141 tgatggttct atacctactt tagatgcttg tgttcagttt atggcctact atcaactagg
    13201 aaaattttta gatcaagaaa cagttgacaa tatagttgca ttcttagaaa gcttaacagg
    13261 agaatatcat gacaaataaa aaaagttcat ttttgataaa atttattatc ttatctacac
    13321 tagttttgac tttcattctt gttttattgg ctattatttt taataactat tcttcatcta
    13381 aaaataacaa agacttgata aacatagttc agcaactaga aatttcagat gaaaaaatca
    13441 attctatttt tcaaaatagt tttaatttta tcaactatga cccaagtgtg caagcgataa
    13501 aaaaaatgca agaaaacttt gcaaaactta aaacttttgg gattgacata agcaaagcag
    13561 aagaaatttt taatgccaaa ctaattcagc ttaattattt taaatccgca aattccatag
    13621 cagtaaattc aaaactttat ttatttgaac tagctaaaaa ttattttgaa gaattggaac
    13681 aaaaccatga aacaaataaa aacaactata aaacaatgaa ctccatgtta agcgttcttt
    13741 caactgaaag tattttacaa aaaacaacat taaatcaact caacaatctt atgaaagaaa
    13801 tcaaaaatga tgcaaaaaat gaaaatttgc aacttttttt aaaacactat aaaatgattg
    13861 taaagcaaat ttctattatg caagataatt cttctattta tgaaaataat tctcttatga
    13921 aagagttaaa acaacttgac acttttaccc aaaatactat agaacaatct aatttattta
    13981 aattttatat cgctttggca gtatttggaa ttactatcgt attatttgta ttttttattt
    14041 tattaacact aaaaaaagtc atcataccaa ttcatacttt agaaaaacta agtgctaatt
    14101 tagctagcaa agaagccaat ctacattctc gtttaaacat agatccaaaa agcgagcttg
    14161 gacaaagcgc tcaatatatt aattcattta tttccaccgt tcaaaactca atcatagaag
    14221 ccatagaaaa tgctaaatca agtcatcaaa attcacaaaa actcaaaaac aactctatga
    14281 tgcttgaaaa cagctctaat tcgcaacatg aacaaattca aggagttaaa gaaatcactc
    14341 atgttttaga tgatcatatc aatcttgcgg gaaatttagc acaagaaagt atagaaaata
    14401 tgcaagatat gcacatacta atggataaag tagaacttac tctatctgaa cttgtaaatt
    14461 taataaatga aaacaatgaa aaagaacaaa atatagtagc caatatggac aatctaaccc
    14521 aaagtgcgga taatattata gaaatcacaa actccattaa agacatagct gatcaaacta
    14581 atttacttgc cctaaatgca gctatcgaag ctgcaagagc aggcgaacat gggcgtggat
    14641 ttgctgttgt agccgatgaa gttggacagc ttgctgataa aacaagtaaa tctcttttaa
    14701 acatcaatgc tactgttaat actatagtcc aacaaatcaa tgacaacaaa gccttaatgg
    14761 atcttatcca tgattctatg aaagaaacct cttcaaaaac caatgattta caacaagaac
    14821 ttgtaaattc tatgcataaa ttggaaagct ctatagaatc aacccaaacc atgaaagata
    14881 aaagcatgga agtaaaagat aaaatgctta tcttaggaac aaatatagat aaagttaacg
    14941 aacttgcaaa ttctgttaaa gatttatcat gtgaaatcaa taatatctct caaaatgttc
    15001 taaatggtgc ctctaaactc tccgaaaaat taagtagctt tcagtaactt ttttcacgtt
    15061 aatttaactt aacgtgaaat ttcaataaaa aatttatttt taatttatgt ttttcaagta
    15121 aaattagcag tttttatttc aaaggagata ctatggagtt tcttgaactt ttattagttt
    15181 taatcgcctt gatactgatt atcaaaaaac cagaaaaaga aaatttggct tttggtttgg
    15241 taatggtagc ttggctttta atggtttttt tctatgttgg ccacaaaaca ggcgcactat
    15301 taacaataat gaatctgtaa ggaagggcta aatgaacgaa atcaataaaa caaaaaattt
    15361 ctacacacta atgtgtttag caggcttttt gattatactc ttgcctgtag gtattgcaaa
    15421 tttgatattt ggttatatgt tgggcgatag tccttgcacg ctttgctggg gacaaagaga
    15481 agcaatgatc tttatcggtg taatggcgct tttcattgtt cgttatggta tgaaaggtaa
    15541 ataccttgct gctcttttaa tcatgacagc agtagggctt tatcaatctt ttgctcacta
    15601 tggtaatcac gctcatagag atttagatca aggttttggt ttagcagttt ttggtatcca
    15661 tacttatttt tgggctgaag tagtattttg ggctgttgta ttgctcttag gtgtgatttt
    15721 tgcttttgct cctaaattta atgcttttga agctgaacta aatggagaaa agtttagaaa
    15781 atatactaaa tttagctttg cagcagtttt aatcagtgct atcatcgtag catcaaatgt
    15841 tttccaagcc tttgttagca caggtattcc tccttatgta ggacaaggcg atcctgtaag
    15901 atttagttta aatccaaaat acatcatttg gagtaaagaa ggttggaatg gtttatggca
    15961 aaatatttct ttcttaggaa aacgcgatgt taaagctcct gattatgctt ttgcacctgc
    16021 aagtgaaaaa cttggcataa aatttgataa tgatatcaac aatgctccat ttgcaaaaat
    16081 caatgatgag cttaaaatca caaatgaaca aaccataaat tttgacaaag ccatcaatac
    16141 tcttgattat atcaataacg aatttgtagc aagttctaaa tgggatgtag ctttcttaga
    16201 taataatttt agcgttaaag aaggttttga acttgatcct tatttttcag cttctatcga
    16261 tccaatcatc ggtatcatac cttatatgaa cgataaattc attcttatgg gctcaaacaa
    16321 atctttctta agatttgcaa aaaatcctaa tgcaagtgaa gaagatatcg ctaaacaata
    16381 cgctgacttt gtaaaaggca atgataaatt taaaggtcaa ggcgaaagtt taggtcgcgg
    16441 aagacttgat accgtaagag caaaatttaa ccatgtagca agtatgacta cagatggaaa
    16501 ttatctttat cttgcaactg ttccaaacaa caaagacgct aaaacttttg taatctctaa
    16561 agtttcttta aaagatcgtg ttctttcagg agaatttact ccaaaagcaa atcttaaaga
    16621 aggtaaaact ttaggcgatc tttatgtaac ttctatgact tttaaagatg gggaaattta
    16681 tgcacttagc aaaaatcaca atgtgattgc cgtaattgat ccagtcaaag aagaagtagt
    16741 aaaaaccatc gctttcccaa gctctatcac taatgctaga agcattttct ttaaagatgg
    16801 aaaaatcaat attctttctt atcaagatgg agcaaacaag ctttatactt taaactaagc
    16861 tttaagtcct agtgaaaact aggacttata tttaatctta tctttaaatc ctgctttttc
    16921 aaaacctctt aaacgaagca aacaactatc gcactcccca caagcttcat cttcactctc
    16981 ataacaagac caagtaagtt ctaaaggtac attttctttt aaggctagtt ctacaatttt
    17041 agctttgttt agtctaacaa gcggagtttt tatacaaact ttgaaattct tactcgtacc
    17101 ttcattgata aattcttgtg ccttttgtat aaactcatca gtacagtcag gataaccact
    17161 gccatcttct tctaccaccc ctataaaaat actctcacaa ttttcctttt cagccaaaga
    17221 tcctgctata cttaagaaaa ttccattgcg aaaaggcaca taagtgatag gtggagtatc
    17281 gcttgtacaa agctcatttt tagggatgtc tatactttta tcggttaagg cattgccccc
    17341 tatatctttg ataaaactca catctaaaat ataagatttt tctactttta aagccttgca
    17401 aatttgctta aaacattctt tttctttttc ttgagtgcgt tgttcatagt caaaatgcaa
    17461 agcgatgatt tcataacctt cttttttggc cagataagca cacaaagtac tatccatacc
    17521 gccacttatg atacaaagtg cttttttact catttttatc cttaaatttg ctataatttc
    17581 acaattttaa cgaaaatttt taaatttaaa ttgcaaaaaa ggcaaaagca tgataaacat
    17641 aaaactcata gaacacattt ttaaagccgc ttctatcagt cgttggaatg attatccaag
    17701 aatggcaaat ttggttgaac ttgacaaaca agctcataaa ttcatcatcg catattttat
    17761 cgctaaaatg gaaaaagatg tggatatgag agtgattata gaagggggaa tttttgagtt
    17821 tttaagtcgt gttgtggtaa ctgatatacg ccctgatgtg tatcatgaaa tcgtgcgtca
    17881 aaaaaaagct gaagttaatg cttgggtttt aagcaaaatc gaacctatga tagaagatat
    17941 agaagatggg gaatttctaa agcgttttga agcgtattta aacggtaatg cttatgctaa
    18001 agaaagactt atcttaaaag cagcttcata ttttgctaca agatgggaat ttaacatagt
    18061 ttatcaaacc tcagcttttt taaatgatat tgatgagatt aaaaacaaag ttgaagaaga
    18121 attagaagat tactatgagc ttataggagc tagaaaaatt gctttaaatc aaaaaatagc
    18181 caaaattatt gatcttagcg gaagacttcg ctttcaaaaa cgttgggctc aaactccacg
    18241 cataccagaa actgcggttt taggacatat gcttgtggtg gcgattttag gatattttta
    18301 ctcactaaaa atcaaggctt gcgataaaag acttgagaat aatttttatt gtgctttgtt
    18361 tcatgatttg ccagagtctt taacacgtga tattatcagc cctgtaaaat acggcattga
    18421 tggacttcat gatatcataa atgattatga aatgaaactt attaatgaaa gaattttacc
    18481 ctttgtacct gagggtttaa gggctgagtt ttcttatatt ttaggcatta gagaaggtag
    18541 aaacggtgag tcaaattttg taaaaaatga gtttgaaaat cgcacttata aaaatgctaa
    18601 aatcgagctt tgcagcggaa gtttaagctc ttttaatgaa aatgaatttg gtgctataga
    18661 tggtaaggcg cttaaatact gcgataaaat tgctgcttat atagaagcag gacttagtat
    18721 aagttatggt gtaaagtcta aagaacttga aagtggtttt ttaggaatgt atgagttttt
    18781 taaagaaaat cctaccatag atggggtgaa tttttttgaa atttgtgaaa gtttaagaga
    18841 gtattttaaa
//
LOCUS       DBBXPZ010000030        18362 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.031, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000030 DBBXPZ010000000
VERSION     DBBXPZ010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18362)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18362)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18362
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.031"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            77..800
                     /locus_tag="ACJFD7_000833"
                     /pseudo
     CDS             77..800
                     /locus_tag="ACJFD7_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344153.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            730..2658
                     /locus_tag="ACJFD7_000834"
     CDS             730..2658
                     /locus_tag="ACJFD7_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859669.1"
                     /translation="MGVENIYTLPLNGAPYISGSVAFDGEAKDNKLILESNTKIDLHN
                     SQYFSDEEGKDIYDERITRLMGVFGINSNLQNNKVLIDSANIVLHGPDGEYTARSTFE
                     ILGALADVNNLKKYNVSKNSVIIKNLNLDLMVNSQNKITFYDAVLFGEIYGGRTLQGN
                     AEKNSIEVYHFNSLDHLDKNIKTHASLNLYGGYSNDGEANGNKIVFRLKKPLKISDNF
                     YGKNYYNLYGGFATEGANFNIIDIQNDLTYEKVPQNYSDKFTVYAARTLSGKANNNTL
                     SIKDSVISLPLYAFITSETTLDGIDYIADESNNNEVNFENIKSSKNLSLMINAKNVSN
                     NKINYNLIQSLTEASSLGKGSKIILKATQNANNNLIKLKDCSSAAVESSCIIKADKES
                     AFNKIIINNTVFSTASDKRQGYVGLIAGVSANSHDNIMELVNLNIDEYKNQDAIFLAL
                     SGTSDISNFKSYNNTLYLGGELNFFKDVNIDLLSGSVFHEVNKKGKIITQILPHQEDF
                     SKNNRLIIDTQDVKSEVVNNFENFTFILPNKIKNPILTIEKLINLPSNGSMEILTKNK
                     PTKGKYILIQSDVGIYDGDNRLLNQQELENLLEKMKNNKNKFNYNKIEKLAKSTLKNV
                     NFSFEVSDDAKIIYINIL"
     gene            2670..4112
                     /locus_tag="ACJFD7_000835"
     CDS             2670..4112
                     /locus_tag="ACJFD7_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HGG0859670.1"
                     /translation="MKKMSKHIVLSFAVSSLLFSQAYALPQGGKFTHGTSGTIHTSGN
                     TVTITGKGQNHVIQWGGGFNIGQNESVNFNGKNQNYLNIAYQKDASKIDGALNRGNNN
                     IFLVNPMGVLIGKTGTITAGKFVASTTALSDDNVKTFLEKGASFSPAFDVSKQGNIIN
                     LGKINADNIVLIGNKVEINKGKITLDVLKLEGNKVYVDAGVVKDTKNIVAKAEQEVII
                     QQSITSFEENGALLGNSSSKFSFDDSSKVKNWTKYGSITDATEWNKFADFWNVNKEKF
                     RTAFDHFRLIDDIDFSGVKTYIVGDNTSNAFAKSFDGSGYALKNVNINLSNQYVGIFG
                     VVQNSYIRNLNIQGLKIASTGYDAYVGGIVGQNIANSYTGFENVTVNDLVINTAVNTK
                     VGGIIGWGNGSGGNNTINFTNVAINNISIVAKEGSYVGGIGRQIDGGNFNNVVVNDIE
                     KLITSGNDSKTGGFTGKVGNLKINNAYLFL"
     gene            4268..5305
                     /locus_tag="ACJFD7_000836"
     CDS             4268..5305
                     /locus_tag="ACJFD7_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859671.1"
                     /translation="MQYNNEVTEKKDFDSAVRKKFNDIKYLDNNSYAFADSFTKVTDA
                     VKLSKDDFDPKLLQRILDDLMNGKYTYDFDTKTWIYADSKGVAGENEASEITQSLNFL
                     NTFKDTGVEQEFLKLWQGSQEQSYKNYTNLYEKWTQKKTAMDKIKTGKGCFASFKEEL
                     QKYQEALAQLDKENKNYEKIKESGLVSDETLRVMYAKLLEQKEALEKQFADLSGNEGF
                     HYKLENEILNSQGFAINGSDVDGKVYTGKYNFEGKLASLPEKSNISIYEPDKQKKEGG
                     GEDLDKPSVLPPEIPEKVVEAPIKIQTKVDTKKEDDDQVDIGEADARSSGLRCIVSDN
                     FKTMNICVNAK"
     gene            5677..5814
                     /locus_tag="ACJFD7_000837"
     CDS             5677..5814
                     /locus_tag="ACJFD7_000837"
                     /inference="COORDINATES: protein motif:HMM:NF020068.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859672.1"
                     /translation="MTNIIVYYCQLSSHPSATAYIPPQDLSSNKVQINIVFGTFRKSN
                     Y"
     gene            5786..6028
                     /locus_tag="ACJFD7_000838"
     CDS             5786..6028
                     /locus_tag="ACJFD7_000838"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859673.1"
                     /translation="MELLGKVIIKNNSGVRDYALESKLNKNLKGKVITTKNVENEIYK
                     INEIYGIQTNANLQSGDGCGESDVIIEVNKGEIVQL"
     gene            6280..6597
                     /locus_tag="ACJFD7_000839"
     CDS             6280..6597
                     /locus_tag="ACJFD7_000839"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859674.1"
                     /translation="MNVGVNFSYPVFLYTEYSLYLVSGFTHKKIKDYYLDGLVSNEKA
                     RNSVNLGIERTYRGLENNVLSYTLNFIYGNVENDGDFSGFNEVNLGNFGKMNLNLSNK
                     YQF"
     gene            6751..7005
                     /locus_tag="ACJFD7_000840"
     CDS             6751..7005
                     /locus_tag="ACJFD7_000840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859675.1"
                     /translation="MGIRFQTPLEGLYSTPFYDIGYSWYENKEYQSENHYLMDAMGIQ
                     ILYTRSVNFYVKMDAARAVHRFKHDGEHRARVYASLEKYF"
     gene            7514..9026
                     /locus_tag="ACJFD7_000841"
     rRNA            7514..9026
                     /locus_tag="ACJFD7_000841"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            9129..9204
                     /locus_tag="ACJFD7_000842"
     tRNA            9129..9204
                     /locus_tag="ACJFD7_000842"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9162..9164,aa:Ala,seq:tgc)
     gene            9213..9289
                     /locus_tag="ACJFD7_000843"
     tRNA            9213..9289
                     /locus_tag="ACJFD7_000843"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9247..9249,aa:Ile,seq:gat)
     gene            9826..12732
                     /locus_tag="ACJFD7_000844"
     rRNA            9826..12732
                     /locus_tag="ACJFD7_000844"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            12988..13104
                     /gene="rrf"
                     /locus_tag="ACJFD7_000845"
     rRNA            12988..13104
                     /gene="rrf"
                     /locus_tag="ACJFD7_000845"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(13300..14508)
                     /gene="murD"
                     /locus_tag="ACJFD7_000846"
     CDS             complement(13300..14508)
                     /gene="murD"
                     /locus_tag="ACJFD7_000846"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HGG0859676.1"
                     /translation="MKISLFGYGKTTRAIAENLVDKFGSFDIYDDHFIETKKDTLGNL
                     LLNPNDFDDNLSDIEIPSPGFPPKHKLIQKAKNLQSEYDFFYDIMPKSVWISGTNGKT
                     TTTQMATHLLSHIGAVMGGNVGTPLAELNPYAKLWILETSSFTLHYTHKAKPEIYALL
                     PISPDHLSWHGSFDNYVQDKLSVLKRMNECDVVILPKIYANTPTKAHKISYEDEKDLA
                     VKFGIDTEKISFKSPFLLDAIMALAIEKILLDTLSYELLNSFVMEKNKLEELKDSQNR
                     LWVNDTKATNESAVMAALRRYKDKKIHLIIGGDDKGVDLSNLFDFMKGFDIELYAIGI
                     STEKMLDYAKKANLKAYKCEVLSKAVNEISNHLRVNEVALLSPACASLDQFNSYAERG
                     KVFKECVNKI"
     gene            complement(14508..15569)
                     /gene="mraY"
                     /locus_tag="ACJFD7_000847"
     CDS             complement(14508..15569)
                     /gene="mraY"
                     /locus_tag="ACJFD7_000847"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HGG0859677.1"
                     /translation="MYYLSDLSHYAFFTYISVRAGFAFFIALCLSLFLMPKFITWAKA
                     KNASQPIYEYAPETHKTKCHTPTMGGLIFISSAVIASLFCIKFDNIFAISALLCLILF
                     CLIGLIDDLGKVLKKDNHSGLSPRMKLLAQIIAGLICILPLYFSSELSTELFIPFYKH
                     PLFDMEIFAIAFWILVLISSSNAVNLTDGLDGLATVPSIFSLSTLGIFLYLSGNLNYS
                     EYLLLPKIQGLGEVVIICAALIGALMGFLWYNCYPAQVFMGDSGSLALGGFIGFLAVI
                     SKNEILLLLIGFVFVLETVSVILQVGSFKIFNKRVFKMAPIHHHFEKVGWVENKIIVR
                     FWMIALLSNLLALASIKLR"
     gene            15649..17127
                     /gene="gpmI"
                     /locus_tag="ACJFD7_000848"
     CDS             15649..17127
                     /gene="gpmI"
                     /locus_tag="ACJFD7_000848"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046537 -
                     2,3-bisphosphoglycerate-independent phosphoglycerate
                     mutase activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HGG0859678.1"
                     /translation="MKQKCVLIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEVPNSLL
                     KTSGLAVGLPEGQMGNSEVGHMCIGSGRIIYQNLVRINKAIENKELEKNENLQKLLAK
                     CKRVHIIGLYSDGGVHSMDTHFKAMLEICAKNGNEVFAHAITDGRDVSPKSGLNFIKD
                     LKEFCENLGVHFATLCGRFYAMDRDKRWDRVKEYYECLLGKAYKVPNLLEYLQKSYDE
                     NVTDEFIKAAQNENYKGMREEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKIFENL
                     LTMSVYDDKFKLPVLFEKEKIENTLAQVISKAGLSQLHTAETEKYAHVTFFFNGGKEE
                     LLENETRVLIPSPKVKTYDEKPQMSAFEVCDAVKKGIEKGEDFIAVNFANGDMVGHTG
                     DFNAAIKAVEAVDTCLGEIIECAKKHDYAFIITSDHGNCEAMQDEKGNLLTNHTTFDV
                     FVFVQAKGVSKIKDNMGLSNIAASVLKILDLEIPKEMNEALF"
     gene            17111..17209
                     /locus_tag="ACJFD7_000849"
     CDS             17111..17209
                     /locus_tag="ACJFD7_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-ketoacyl-ACP reductase"
                     /protein_id="HGG0859679.1"
                     /translation="MRLYFSLFAFFIRNLLRLQFLKLNLLRIDNEI"
     gene            17199..17942
                     /gene="fabG"
                     /locus_tag="ACJFD7_000850"
     CDS             17199..17942
                     /gene="fabG"
                     /locus_tag="ACJFD7_000850"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HGG0859680.1"
                     /translation="MKFSGKNVLITGASKGIGASIAKTLAGFGLKVWINYRSKPELAD
                     ALKDEIIASGGVAAVIKFDASKEDEFENGVKTIVESDGELSYLVNNAGVTNDKLALRM
                     KLEDFSSVVDTNLSSAFLGCREALKTMSKKRFGAVVNIASIVGEMGNAGQVNYSASKG
                     GMIAMTKSFAKEGASRNLRFNCVTPGFIKSDMTEVLSDEIKQTYQDNIPLKRFAEPEE
                     VANCVAFLLSDYASYVTGDVLKINGGLYM"
     gene            17949..18359
                     /locus_tag="ACJFD7_000851"
     CDS             17949..18359
                     /locus_tag="ACJFD7_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HGG0859681.1"
                     /translation="MMDLKEIAQFLDDNAPAFLATLGTCGNPRVRPIQSPLLVGDKIY
                     FCTANTKGLFKHIKNYNGIEFCSCAKDGTFLRLRANAVFEPNLEVKKMMFKKYPYLVN
                     LYETPQNPKFEVFYLDHLSARMQFVNGEFKLFKA"
BASE COUNT         6470 a         2658 c         3653 g         5581 t
ORIGIN      
        1 ctcaggacat acgggatagt gttgcaaata atcaatttgc gataaatcaa aaggttttat
       61 tttagtgaga aatgagatga aaaaatattt taatattttt aaaattttta caaataagac
      121 aaatgcaaaa tttagcttgg gcgtttgtag tgtggtttta tcttcttcgg tttgttttgc
      181 ggcggttcag gctacaagta aggatggaaa aattttttat atttctgaac attcttttaa
      241 ggataatcaa gtttatgatc ctcaagcaga aatttttaaa aaaattaatg gaaaaaattt
      301 ctatgcttct aagtcaaaat accctatatc aaatttaact atgatttata ataaccctaa
      361 atctggaaat aaaaatttat ccaagcttga aattttaact ccggatactt caaaagaaga
      421 gatcataaca gcttttagca ctttaggaac cgtatcttca gatactcaag ccgttcctag
      481 ttcttttata ccttttattg taacagctta tgctcaaaat acaaatgcaa caaatagtaa
      541 acttatatta gaaaatggag aattatcttc tgtgtatttt tgcaaaccaa gcatagggga
      601 ttgtggagta cctaataatt ctcaaaaagg cgatcgtttt aagtatttaa ttactgcggc
      661 gtttactgac aggcgggggg gggggattta acaatcaaac cattttaaaa gaaaactcct
      721 atatcaataa tgggtgtaga aaatatctac accttgccct taaatggagc tccttatatt
      781 tcaggatctg tagcttttga tggtgaagct aaagacaata aattaatctt agagtcaaat
      841 acaaaaattg accttcataa ttcccagtat ttttcagatg aagaaggtaa ggatatttat
      901 gatgaaagaa ttactcgttt aatgggagtt tttggcataa attctaattt acaaaacaat
      961 aaagttctta tcgattcagc caatatcgtc cttcatgggc cagatggtga gtatacagct
     1021 cgttcgacct ttgaaatttt aggtgcttta gctgatgtaa ataatcttaa aaaatacaat
     1081 gtaagtaaaa attccgtaat aattaaaaat ttaaatttag atttaatggt aaattcgcaa
     1141 aataaaataa ctttttatga tgctgtttta tttggagaaa tttatggcgg aagaacatta
     1201 cagggtaatg cagagaaaaa ttctatagaa gtttatcatt ttaactcatt agatcatctt
     1261 gataaaaaca ttaaaacaca tgcatcgtta aacctctatg gtgggtattc taacgatggt
     1321 gaagctaatg gaaataaaat tgtatttcgt cttaaaaaac ctttaaaaat cagtgataat
     1381 ttttatggaa aaaattatta caatctttac ggaggttttg ctacggaggg tgcgaatttt
     1441 aatattattg atatacaaaa tgatttaacc tatgaaaaag ttccacaaaa ttattctgat
     1501 aaatttactg tatatgcagc tagaacttta agtggaaaag caaataataa taccttaagt
     1561 ataaaagatt ctgttatttc attgccttta tatgctttta ttacaagtga aactacgcta
     1621 gatggtatag actatatcgc tgatgaatca aacaataatg aagtaaattt tgaaaatatt
     1681 aaatcatcta aaaatttaag tttgatgatc aatgctaaaa atgtttcaaa taataaaata
     1741 aattataatc tcattcagag tttaaccgaa gcgagttctt taggaaaggg ctcaaaaatt
     1801 attttaaaag caactcaaaa tgcaaacaac aatcttataa agcttaaaga ttgttcttcg
     1861 gctgccgtgg aaagttcgtg catcataaaa gcagataaag aaagtgcttt taataaaatc
     1921 atcatcaaca acacagtttt tagtactgcc tcagataaaa gacaaggtta tgtggggttg
     1981 atagctggag tgtctgcaaa ttctcatgat aatatcatgg agcttgttaa tttaaatata
     2041 gatgagtata aaaatcaaga tgctatattt ttagctctat ctggaacttc ggatatttca
     2101 aattttaaat cttataacaa tactttatat ttaggtggag agttaaattt ctttaaagat
     2161 gtaaatatcg atttgctttc tggttctgtt tttcatgaag taaataaaaa aggcaaaata
     2221 atcactcaaa ttctaccgca tcaagaagat ttttctaaaa ataatcgttt gattatagat
     2281 actcaagatg tcaaatcaga agtggtaaat aactttgaaa attttacttt tattttacca
     2341 aataaaataa aaaatcctat cttgactata gaaaaactta taaatcttcc ttcaaatgga
     2401 agtatggaaa ttcttactaa aaataaacca acaaaaggaa aatatattct catacaaagt
     2461 gatgttggaa tttatgatgg tgacaataga ttgttaaatc aacaagaatt agaaaatttg
     2521 ttagaaaaaa tgaaaaataa taaaaataaa tttaattaca acaagataga aaagttggct
     2581 aaaagtacat tgaaaaatgt aaattttagc tttgaagttt cagatgatgc aaaaataatt
     2641 tatatcaaca tactttaaag gagagtaaca tgaaaaagat gagtaaacat atagttttat
     2701 catttgcggt gagttctttg ctcttttctc aagcttatgc tttgccacaa ggaggtaaat
     2761 tcactcatgg tacaagtggg actatccata cctctggcaa tactgtaacg attacaggaa
     2821 aaggacaaaa tcatgttatc caatggggtg gcggttttaa tataggacaa aatgaaagtg
     2881 taaattttaa cggcaaaaat caaaactatc taaacattgc ttatcaaaaa gatgcttcta
     2941 agatagacgg agctttaaat agagggaata acaatatctt tttagttaat cctatggggg
     3001 ttttgattgg caaaacagga actattactg cgggaaaatt tgtagctagc acaacagctt
     3061 taagcgatga taatgtcaaa acttttttag agaaaggagc tagtttctct ccggcatttg
     3121 atgtaagcaa acaaggaaat attataaatc ttggaaaaat caatgcagat aatattgttt
     3181 taataggaaa taaggttgaa atcaataaag gaaaaattac tttggatgta ttaaaacttg
     3241 aaggtaataa agtttatgtt gatgctggag tggtaaaaga tacaaaaaat atcgtagcca
     3301 aagcagagca agaagttatc attcaacaaa gcataacaag ttttgaagaa aatggagctt
     3361 tattgggtaa ttctagtagt aaatttagtt ttgatgatag tagtaaagtt aaaaactgga
     3421 ctaaatatgg aagtattacg gatgcaacag aatggaataa atttgctgat ttttggaatg
     3481 taaataaaga aaaatttaga acagcttttg atcattttcg tttgattgat gatattgatt
     3541 ttagtggcgt gaaaacatac atagtaggtg ataatacaag caatgctttt gctaaatctt
     3601 tcgatggttc tggttatgct ttaaaaaatg ttaatattaa tttatcaaat caatatgtag
     3661 gaatttttgg agttgttcaa aatagctata taagaaacct taatattcaa ggattgaaaa
     3721 ttgcttcaac tggttatgat gcttatgttg gaggtatagt agggcaaaat attgcaaaca
     3781 gttatacggg ttttgaaaat gtgactgtta atgatctcgt tattaataca gctgtaaata
     3841 ctaaagttgg cggaataata ggctggggaa atggtagtgg agggaataac actatcaatt
     3901 ttacaaatgt tgctattaat aatataagta tagtagcaaa agaaggttct tatgtgggtg
     3961 gcataggcag acaaattgat ggtggtaatt ttaataatgt tgtggttaat gacatagaaa
     4021 aacttataac ttctgggaat gatagtaaaa caggaggatt tactggaaaa gttggaaatt
     4081 taaagattaa taatgcttac ttatttttat aaaaatggag caattttgag cgctggaaac
     4141 tataaaacac aagctggaaa agttattggt gatcctggat tagtgtaaat aataatttta
     4201 gtaatattta tgtttatcat aatttagaaa atggttacat tgatgaagga cagaattttt
     4261 taagtctgtg caatataata atgaagtaac agaaaaaaaa gattttgata gtgctgtaag
     4321 aaagaaattt aacgatataa aatatcttga taataattct tatgcttttg ctgattcttt
     4381 taccaaggta acagatgctg tgaaattatc caaagacgac tttgacccta aattgcttca
     4441 aagaatttta gatgatttga tgaatggaaa atacacttat gattttgata ccaaaacttg
     4501 gatttacgca gatagcaagg gtgtggcagg ggaaaatgaa gccagtgaga tcactcaaag
     4561 tttaaatttc ttaaatacat ttaaagatac tggagtagaa caagaatttt taaagttatg
     4621 gcaaggttcg caagaacaaa gttataaaaa ttataccaat ctttatgaaa aatggacgca
     4681 aaagaaaact gctatggata aaatcaaaac cggcaaaggt tgtttcgcta gttttaaaga
     4741 agaattacaa aaataccaag aagccttagc tcaacttgac aaagaaaata aaaactatga
     4801 aaaaatcaaa gaatcaggct tagttagcga tgaaacgctt agagttatgt atgcaaaact
     4861 tttagaacaa aaagaagctc ttgaaaagca gtttgcggat cttagtggaa atgaaggatt
     4921 tcactataag cttgaaaatg agattctaaa ttctcaaggt tttgctataa atggaagcga
     4981 tgtagatggt aaagtgtaca ctggaaaata taattttgaa ggaaaattag cctcattgcc
     5041 agaaaaatca aatatatcta tctatgagcc agataaacaa aaaaaagagg gagggggtga
     5101 agatctagac aaaccttctg tattgccgcc tgaaattcct gaaaaggttg tagaagctcc
     5161 tataaaaatt caaactaaag tagacacaaa aaaagaagat gatgatcaag tggacatagg
     5221 agaagcagat gctagaagta gtggtttgcg ttgtattgta agtgataatt ttaagacaat
     5281 gaacatttgt gtaaatgcaa aataggaaat aaaaatgaga aaaattttag ttgttttaat
     5341 cttattgtaa atattttcac atgctgaaga gctaaataat aataaaataa gagagcttat
     5401 agaaagctct tctgaagcaa atggaccaca aaataaaaat taaaaaatac attaaaaaat
     5461 caaaaaagcc ctgtaaattt taaagagcaa aatactacaa atattgcaaa tttacaaact
     5521 gatcaaaatg aagctaaggt ttttgtaaga gagtatgttt tgcatatcga taataaagat
     5581 ttgacattta aaaaattaag aattagcgaa aaataaattc aagatgcaat agctgaatat
     5641 cgcaaccaag aattaagctt acaaaattta aaagatataa caaacattat agtttattat
     5701 tgtcaattaa gtagccatcc ttcggcaact gcttatatac caccgcaaga tttaagttct
     5761 aacaaagtgc aaattaacat agtttttgga acttttagga aaagtaatta ttaaaaacaa
     5821 ctcaggtgtc agagattatg ctttagagag taaattgaac aaaaatctta aagggaaagt
     5881 tatcacaact aaaaatgtgg aaaatgaaat ttataaaatc aatgaaatat acggaatcca
     5941 aaccaatgct aatttacaat caggtgatgg ttgtggagaa agcgatgtta ttatagaagt
     6001 aaacaaaggt gagatagtgc aactttaact ttatattcta acaactatgg ggctaaagaa
     6061 acaggtcgtt ttagagcagg aatgagtcaa agtttaaaca atatagcaag ataaggggat
     6121 aacttaaatt tttatcttca agatagtgat gaaaatcaaa cagattatgg gattaattat
     6181 agtactttta tagggaattt aaaaattact ccatttgcaa ctcaaggaca ttatgttcct
     6241 ggcagaattt atagaaatct tagtttttat agggactcta tgaatgttgg agtaaatttt
     6301 tcttatcctg tgtttttata tactgagtat tctttatatc ttgtttcggg ttttactcat
     6361 aaaaagatta aagattatta tcttgatggt ttagtaagca atgaaaaagc gagaaatagt
     6421 gtaaatttgg gcatagaaag aacttataga ggtttggaga ataatgtcct aagttatact
     6481 ttaaatttta tatatggtaa tgttgaaaat gatggtgatt tttctggatt taatgaagta
     6541 aatttaggaa attttggaaa aatgaattta aatttaagca acaaatatca attctaagaa
     6601 cgcttaactc acatttttca acttaattat caaaaagtta tcagcgatgc tgttttagat
     6661 agtagtgaat ccgtatcttt aggtagacct tgtggtgtat gtgtttgttt agaaggtgag
     6721 ggaagtgcgg ataatgttgt ttcttgcgcc ttgggaataa gatttcaaac acctttagaa
     6781 gggctttact cgactccttt ttatgatata gggtattctt ggtatgaaaa taaagaatat
     6841 caaagtgaaa atcattatct tatggatgca atgggtatac aaatactcta tacaagaagt
     6901 gttaattttt atgtaaaaat ggatgctgca agagctgttc atcggtttaa acacgatgga
     6961 gaacatcgag caagagttta tgcaagccta gaaaaatact tttaactttg gggtgattgg
     7021 aaaattcccc ccccccgcca atttttaaac ccaccaaata cttatataaa tacttacaca
     7081 aatatttata ctatttaatc ctttgtttaa tcccctttta agtttaattg gttatacttt
     7141 catttccttt ttttgaaaaa aggacttaaa atcttttaaa ttataaagtt tcactagctt
     7201 agtagatttt ataaattaac tcttttggtt tttgtcttat aaactaaaag cttttttata
     7261 aatcttgttt tttaatttaa aaacttttct tttaaaaatg attttttgtt ttgttctttt
     7321 aacttagtat tgttattcaa atcttattag tcaatctttg aaatctaaat aagtgatcga
     7381 ttgagccaga aagatttagg cataagtaat tatataaaat ctattcaatc taataattaa
     7441 aaagattaaa agtttttctt ttaatctttc ataaactttt tctttgaaga aaaagattaa
     7501 actatctata atttttatgg agagtttgat cctggctcag agtgaacgct ggcggcgtgc
     7561 ctaatacatg caagtcgaac gatgaagctt ctagcttgct agaagtggat tagtggcgca
     7621 cgggtgagta aggtatagtt aatctgccct acacaagagg acaacagttg gaaacgactg
     7681 ctaatactct atactcctgc ttaacacaag ttgagtaggg aaagtttttc ggtgtaggat
     7741 gagactatat agtatcagct agttggtaag gtaatggctt accaaggcta tgacgcttaa
     7801 ctggtctgag aggatgatca gtcacactgg aactgagaca cggtccagac tcctacggga
     7861 ggcagcagta gggaatattg cgcaatgggg gaaaccctga cgcagcaacg ccgcgtggag
     7921 gatgacactt ttcggagcgt aaactccttt tcttagggaa gaattctgac ggtacctaag
     7981 gaataagcac cggctaactc cgtgccagca gccgcggtaa tacggagggt gcaagcgtta
     8041 ctcggaatca ctgggcgtaa agggcgcgta ggcggattat caagtctctt gtgaaatcta
     8101 atggcttaac cattaaactg cttgggaaac tgatagtcta gagtgaggga gaggcagatg
     8161 gaattggtgg tgtaggggta aaatccgtag atatcaccaa gaatacccat tgcgaaggcg
     8221 atctgctgga actcaactga cgctaaggcg cgaaagcgtg gggagcaaac aggattagat
     8281 accctggtag tccacgccct aaacgatgta cactagttgt tggggtgcta gtcatctcag
     8341 taatgcagct aacgcattaa gtgtaccgcc tggggagtac ggtcgcaaga ttaaaactca
     8401 aaggaataga cggggacccg cacaagcggt ggagcatgtg gtttaattcg aagatacgcg
     8461 aagaacctta cctgggcttg atatcctaag aaccttttag agataagagg gtgctagctt
     8521 gctagaactt agagacaggt gctgcacggc tgtcgtcagc tcgtgtcgtg agatgttggg
     8581 ttaagtcccg caacgagcgc aacccacgta tttagttgct aacggttcgg ccgagcactc
     8641 taaatagact gccttcgtaa ggaggaggaa ggtgtggacg acgtcaagtc atcatggccc
     8701 ttatgcccag ggcgacacac gtgctacaat ggcatataca atgagacgca ataccgcgag
     8761 gtggagcaaa tctataaaat atgtcccagt tcggattgtt ctctgcaact cgagagcatg
     8821 aagccggaat cgctagtaat cgtagatcag ccatgctacg gtgaatacgt tcccgggtct
     8881 tgtactcacc gcccgtcaca ccatgggagt tgatttcact cgaagccgga atactaaact
     8941 agttaccgtc cacagtggaa tcagcgactg gggtgaagtc gtaacaaggt aaccgtagga
     9001 gaacctgcgg ttggatcacc tcctttctag agtacaaagt aataagtctc acaactatta
     9061 cttcaatata taaactcaat tgattcttgt ttagatttca aagattgatg ataaagctaa
     9121 ttgtttatgg ggaattagct cagctgggag agcgcctgct ttgcacgcag gaggtcagcg
     9181 gttcgatccc gctattctcc accatttatt aagggcctat agctcagctg gttagagtgc
     9241 acccctgata agggtgaggt cacaagttca agtcttgtta ggcccaccat aaaaaagatt
     9301 tgaataaaga agctttaaaa tctaaagcaa gtatataaaa tagattaaat ataaaatata
     9361 aactctatac ttagatttat tttttatctt taactataaa agaatatact ttaatagata
     9421 taagtagcat atacattatg catttatatt tataatgaat tatgttaata tatatacttc
     9481 ctttaggttt taaacctaaa tgttcttttt aattatcatt gttaagagtc acaagcaagt
     9541 tttaataaaa acaattttac aggacttgtt aaaggataaa acctatttat cttttcttta
     9601 gtttaactta acttttagct gtcttctctt ctatgaataa agagaatatt agatttaagg
     9661 attataaatt aaagacaagt ttcaaactca ctgcttagtt gagactaaat catttagttt
     9721 tatattaagt gtttgaatgc tttccgtctt aagataaaga agtcttatca taaaaacttt
     9781 aacaaggaag tgatgcgttt tagaatcaat aataaaaggt aaaaaaggta agctactaag
     9841 agcgaatggt ggatgccttg actggtaaag gcgatgaagg acgtactaga ctgcgataag
     9901 ctacggggag ctgtcaagaa gctttgatcc gtagatttcc gaatggggca acccaatgta
     9961 tagagatata cattacctat ataggagcga acgaggggaa ttgaaacatc ttagtaccct
    10021 caggaaaaga aatcaataga gattgcgtca gtagcggcga gcgaaagcgc aagagggcaa
    10081 acccagtgct tgcactgggg gttgtaggac tgcaatgtgc aagaggtaag tttagcagaa
    10141 cattctggaa agtataacca tagagggtga tagtcccgta tgcgaaaaac aaaccttagc
    10201 tagcagtatc ctgagtaggg cgggacacga ggaatcctgt ctgaatccgg gtcgaccacg
    10261 atccaaccct aaatactaat accagatcga tagtgcacaa gtaccgtgag ggaaaggtga
    10321 aaagaactga ggtgatcaga gtgaaataga acctgaaacc atttgcttac aatcattcag
    10381 agccctatgt agcaatacag ggtgatggac tgccttttgc ataatgagcc tgcgagttgt
    10441 ggtgtctggc aaggttaagc aaacgcgaag ccgtagcgaa agcgagtctg aatagggcgc
    10501 ttagtcagat gctgcagacc cgaaacgaag tgatctatcc atgagcaagt tgaagctagt
    10561 gtaagaacta gtggaggact gaacccatag gcgttgaaaa gccccgggat gacttgtgga
    10621 taggggtgaa aggccaatca aacttcgtga tagctggttc tctccgaaat atatttaggt
    10681 atagcgttgt gtcgtaatat aagggggtag agcactgaat gggctagggc atacaccaat
    10741 gtaccaaacc ctatcaaact ccgaatacct tatatgtaat cacagcagtc aggcggcgag
    10801 tgataaaatc cgtcgtcaag agggaaacaa cccagactac cagctaaggt ccctaaatct
    10861 tacttaagtg gaaaacgatg tgaagttact taaacaacca ggaggttggc ttagaagcag
    10921 ccatccttta aagaaagcgt aatagctcac tggtctagtg attttgcgcg gaaaatataa
    10981 cggggctaaa gtaagtaccg aagctgtaga cttagtttac taagtggtag gagagcgttc
    11041 tatttgcgtc gaaggtatac cggtaaggag tgctggagcg aatagaagtg agcatgcagg
    11101 catgagtagc gataattaat gtgagaatca ttaacgccgt aaacccaagg tttcctacgc
    11161 gatgctcgtc atcgtagggt tagtcgggtc ctaagtcgag tccgaaaggg gtagacgatg
    11221 gcaaattggt taatattcca ataccaacat tagtgtgcga tggaaggacg cttagggcta
    11281 agggggctag cggatggaag tgctagtcta aggtcgtagg aggttgtaca ggcaaatccg
    11341 tataacaata ctccgagaac tgaaaggctt tttgaagtct tcggatggat agaagaaccc
    11401 ctgatgccgt cgagccaaga aaagtttcta agtttagcta atgttgcccg taccgtaaac
    11461 cgacacaggt gggtgggatg agtattctaa ggcgcgtgga agaactctct ttaaggaact
    11521 ctgcaaaata gcaccgtatc ttcggtataa ggtgtggtta gctttgtatt aggatttact
    11581 ccgaaagcaa ggaaacttac aacaaagagt ccctcccgac tgtttaccaa aaacacagca
    11641 ctctgctaac tcgtaagagg atgtataggg tgtgacgcct gcccggtgct cgaaggttaa
    11701 ttgatggggt tagcattagc gaagctcttg atcgaagccc gagtaaacgg cggccgtaac
    11761 tataacggtc ctaaggtagc gaaattcctt gtcggttaaa taccgacctg catgaatggc
    11821 gtaacgagat gggagctgtc tcaaagaggg atccagtgaa attgtagtgg aggtgaaaat
    11881 tcctcctacc cgcggcaaga cggaaagacc ccgtggacct ttactacagc ttgacactgc
    11941 tacttggata agaatgtgca ggataggtgg gaggctttga gtatatgacg ccagttgtat
    12001 atgagccatt gttgagatac cactctttct tatttgggta gctaaccagc ttgagttatc
    12061 ctcaagtggg acaatgtctg gtgggtagtt tgactggggc ggtcgcctcc caaataataa
    12121 cggaggctta caaaggttgg ctcagaacgg ttggaaatcg ttcgtagagt ataaaggtat
    12181 aagccagctt aactgcaaga catacaagtc aagcagagac gaaagtcggt cttagtgatc
    12241 cggtggttct gtgtggaagg gccatcgctc aaaggataaa aggtaccccg gggataacag
    12301 gctgatctcc cccaagagct cacatcgacg gggaggtttg gcacctcgat gtcggctcat
    12361 cgcatcctgg ggctggagca ggtcccaagg gtatggctgt tcgccattta aagcggtacg
    12421 cgagctgggt tcagaacgtc gtgagacagt tcggtcccta tctgccgtgg gcgtaagaag
    12481 attgaagaga tttgacccta gtacgagagg accgggttga acaaaccact ggtgtagctg
    12541 ttgttctgcc aagagcatcg cagcgtagct aagtttggaa aggataaacg ctgaaagcat
    12601 ctaagcgtga agccaactct aagatgaatc ttctctaagc tctctagaag actactagtt
    12661 tgataggctg ggtgtgtaat ggatgaaagt cctttagctg accagtacta atagagcgtt
    12721 tggcttatct ttaataaagc atcacttcct tgttaaggtt tttaagaaga ctttgaatat
    12781 agataatatt tagagtttaa tagaaatctt tcaagtagag tttgtattag aacttgctct
    12841 taacattgtt ttttaagtat tctatataaa aacttatcaa agataaaaga taagaaaaga
    12901 agaaagagaa taaagaaaaa agtaaagaaa taaaagatta agttttattt ttaaattcaa
    12961 tctttcaaag aatatttaaa taacaatgtc cgtgattata cagatgtgga aacgccttgc
    13021 tccatcccga accaagaagc taagcacatc gtgggtgatg atactacgcc ttactggcag
    13081 ggggaaagta gctcattgcg gacttgttaa atgtcttcat tacttacttt atatataaat
    13141 cctatgttta tttttattgt tgttttagat gatacttaga atcgtgttta aaaaagagtt
    13201 tgctgctggt tagggttttt agagagaata gggtgttttt aggggtttga aaatactaga
    13261 aggataaaat ttaaaatttt ctatgaaaag taaaataaat taaattttat tcacacattc
    13321 tttaaagact tttccacgct ctgcgtaaga gttgaactga tctaaacttg cacaagcagg
    13381 acttaaaaga gccacttcat tgactcttaa gtgatttgaa atttcattta cagccttaga
    13441 taaaacttca catttatagg ctttcaaatt cgcttttttt gcataatcaa gcattttttc
    13501 agtactaata cctatagcat agagttctat atcaaatcct ttcataaaat caaataaatt
    13561 gctaagatct acacccttat catctccccc tatgataaga tggatttttt tatctttata
    13621 gcgtctaagt gcagccatta cagcactttc atttgtagct ttagtgtcat ttacccaaag
    13681 cctattttga ctgtctttaa gctcttcgag tttatttttt tccattacaa agctatttaa
    13741 aagctcatag cttaaagtat caagtagaat tttttctata gctaaagcca tgatggcatc
    13801 gagtaaaaaa ggacttttaa aggaaatttt ttccgtatca atgccaaatt taacagctag
    13861 atctttttca tcttcataac ttattttgtg agcttttgtt ggagtatttg cataaatttt
    13921 aggcagtatt actacatcgc attcattcat tctttttaaa acgcttagct tatcttgaac
    13981 ataattatca aaacttccat gccaagaaag atgatcagga cttataggta aaagtgcata
    14041 aatttcaggt ttagctttat gagtgtagtg tagggtaaaa gatgaagttt caagtatcca
    14101 aagttttgca taaggattaa gctctgctaa aggagttcca acatttccac ccataacagc
    14161 accaatatgt gataataaat gtgtagccat ttgagtggta gtggttttgc cattggttcc
    14221 gcttatccaa acggattttg gcatgatatc ataaaaaaag tcatattcac tttgtaaatt
    14281 ttttgctttt tgaatgagtt tgtgctttgg tggaaaacct ggactaggaa tttcaatatc
    14341 gcttaaatta tcatcaaaat cattaggatt taaaagtaaa tttcctagtg tatctttttt
    14401 tgtttctata aaatgatcat catagatatc aaaagaccca aatttatcta ccaaattttc
    14461 agcaatagcg cgtgtggttt ttccatatcc aaaaagtgaa attttcatta tcttagcttt
    14521 attgatgcaa gtgcaagtaa atttgaaagt aaggctatca tccaaaaacg cactataatt
    14581 ttattttcta cccagccaac tttttcaaaa tgatgatgaa taggtgccat tttaaagact
    14641 cttttattaa aaattttaaa acttccaact tgtaaaatta cagaaacagt ttcaagaaca
    14701 aaaacaaaac ctatgagtaa aagtaaaatt tcatttttgc taataacggc taaaaatcct
    14761 atgaatccac ctaaagctaa actcccgcta tcccccataa aaacctgcgc aggataacag
    14821 ttgtaccata aaaatcccat taaagcaccg attaatgcag cacaaataat cactacttca
    14881 ccaagtcctt gaatttttgg caaaagtaaa tattcactat aatttaaatt tccgctcaaa
    14941 tataagaata tccctaaagt agataaagaa aaaatacttg gaactgtagc taagccatca
    15001 agtccatcgg ttaaatttac agcattagag ctagaaatta aaaccaaaat ccaaaaagca
    15061 atggcaaaaa tttccatatc aaaaagaggg tgtttgtaaa aaggtataaa aagttccgtg
    15121 ctaagctctg aactaaaata taaaggtaag atgcaaataa gtccagcgat gatttgtgct
    15181 aaaagcttca ttcttggact aagtcctgaa tgattatctt tttttagaac tttgcctaaa
    15241 tcatctatga gacctatcaa acaaaaaagt atcaaacaaa gtaaagcact tatagcaaaa
    15301 atattatcaa atttgataca aaataaactt gcgattaccg cagaactgat gaaaataagc
    15361 ccacccatgg ttggagtatg gcatttggtt ttatgagttt ctggggcgta ttcgtaaata
    15421 ggttgactag catttttagc ttttgcccaa gtaataaatt taggcattaa aaataaagac
    15481 aaacataaag cgataaaaaa tgcaaagcct gcacgcacac taatataagt aaaaaaagca
    15541 taatgactta aatctgaaag ataatacaaa acctagcctt ctttttggtt tttaaaagtt
    15601 taattttagt aaaatctaac caaaaaaatt cttataaaag agagaaaaat gaagcaaaaa
    15661 tgcgttttaa ttattacaga tggaataggg tataataaga atagtaagtt taatgctttt
    15721 gaagcagcta aaaaaccaag ttatgaaaag ctttttaagg aagtcccaaa ttctttacta
    15781 aaaacgagtg gtttagctgt aggtttgcca gaagggcaga tgggaaatag tgaagtaggg
    15841 catatgtgta taggaagtgg gcgtattatt tatcaaaatt tagtgcgtat taataaagcc
    15901 attgaaaaca aagaacttga aaaaaatgag aatttacaaa aacttttagc aaaatgtaaa
    15961 agagtgcata ttatagggct ttatagtgat ggcggggtgc attctatgga tacgcatttt
    16021 aaagccatgc ttgaaatttg tgcgaaaaat ggcaatgaag tttttgctca cgcaatcact
    16081 gatgggcgtg atgtaagtcc aaaaagtggc ttaaatttca taaaagattt aaaagaattt
    16141 tgtgaaaact taggcgtgca ttttgctacg ctttgtgggc gtttttatgc tatggataga
    16201 gataagcgtt gggatagggt aaaagagtat tatgagtgct tgttaggtaa ggcttataaa
    16261 gtgccaaatt tattagaata cctacaaaaa tcttacgatg aaaatgttac tgatgagttt
    16321 atcaaagcag ctcaaaatga gaattacaag ggcatgagag aagaagatgg cattatcttt
    16381 atcaacttta gaaatgatag aatgaaacaa cttgttgaag tgttaaattc taaggatttt
    16441 aaagagtttg aacgcgaaaa aatctttgaa aatttactta ctatgagtgt ttatgatgat
    16501 aaatttaaac tccctgtgct ttttgaaaaa gaaaaaattg aaaatacttt agcgcaagtg
    16561 atttctaaag cagggcttag tcagcttcat accgcagaaa ccgaaaaata cgcccatgta
    16621 actttctttt ttaatggcgg aaaagaagag cttttagaaa atgaaacaag ggttttaatc
    16681 ccaagcccca aggtaaaaac ttatgatgaa aaaccccaaa tgagtgcttt tgaagtgtgt
    16741 gatgcagtga aaaaaggcat agaaaagggt gaggatttta tagcggtaaa ttttgcaaat
    16801 ggagatatgg ttggacatac aggtgatttt aatgctgcta taaaggctgt cgaagcggtg
    16861 gatacttgtt taggcgagat tatagaatgt gcaaaaaagc atgattatgc ttttatcatt
    16921 acaagtgatc atggaaattg cgaggctatg caagatgaaa aaggaaattt gcttaccaat
    16981 cacaccactt ttgatgtttt tgtttttgtg caagcaaagg gagtttcaaa gattaaagat
    17041 aatatggggc ttagcaatat cgctgcaagc gtgcttaaaa ttttagactt agaaattcca
    17101 aaagaaatga atgaggcttt attttagttt gtttgccttt tttataagaa atttgttaag
    17161 attgcaattt ttaaaattaa acttattaag gatagataat gaaatttagt ggaaaaaatg
    17221 ttttaattac tggagcaagt aagggaatag gtgcttctat cgcaaaaact ttggcgggtt
    17281 ttggacttaa agtttggatc aattatcgtt caaaacctga acttgcagat gctttaaaag
    17341 atgaaattat tgcaagtggt ggcgttgctg ctgtgattaa atttgatgca agcaaagaag
    17401 atgagtttga aaacggtgta aaaactatag ttgagagtga tggagaatta agttatcttg
    17461 taaataatgc aggcgttaca aatgataaac ttgctttaag aatgaaatta gaggacttta
    17521 gtagcgttgt agatacaaat ttaagctcag cttttttagg ttgtagagaa gctttaaaaa
    17581 ccatgagtaa aaaacgtttt ggtgctgttg taaatatcgc ttctattgtc ggagaaatgg
    17641 gcaatgctgg acaagtaaat tattctgcta gtaaaggtgg aatgatagct atgactaaat
    17701 cttttgctaa agaaggagca agtagaaatt tacgctttaa ctgtgtgact ccaggtttca
    17761 taaaaagcga tatgactgaa gttttaagtg atgaaatcaa acaaacctat caagacaata
    17821 tccctttaaa acgctttgca gaacctgaag aagtggctaa ttgtgtagcg tttttactta
    17881 gtgattatgc ctcttatgtg acaggcgatg tgcttaagat caatggtggt ttatatatgt
    17941 aaggaaaaat gatggattta aaagaaatag cacaattttt agatgataat gcaccagcat
    18001 ttttagccac tttaggaact tgtggaaatc ctagagtgcg tcctatacaa agtccattgc
    18061 ttgtgggaga taaaatttat ttttgcacag caaatacaaa aggacttttt aagcatataa
    18121 aaaattataa tggtattgaa ttttgttctt gtgcaaaaga tgggactttt ttaagactta
    18181 gagctaatgc ggtttttgaa ccaaatttag aagttaaaaa aatgatgttt aaaaaatatc
    18241 cttatcttgt aaatctttat gaaactccgc aaaatccaaa atttgaagtt ttttatcttg
    18301 atcatttaag cgctagaatg caatttgtga atggagaatt taagcttttt aaggcttaat
    18361 ga
//
LOCUS       DBBXPZ010000031        18134 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.033, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000031 DBBXPZ010000000
VERSION     DBBXPZ010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18134)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18134)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18134
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.033"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(5..742)
                     /locus_tag="ACJFD7_000852"
     CDS             complement(5..742)
                     /locus_tag="ACJFD7_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HGG0859682.1"
                     /translation="MDKNQEKEIISYMRELLNSNEKLDCGTAFKIAKKFNINIEKIGQ
                     LADENHMRIDNCELGQFGHLDFEKAKIEVLKKIEPSLDEKRRIFCKDARDIAKEGCGL
                     KSMRSALKTYKVDVKYCQLGCFKEKKGKQFIVRTKTWIENADGDLLFGRGKTELLELI
                     GQTGSLLHASKLMGINYKKAWMHLQTLQKNSQEILVSTRQGRSKESGTKLTPRAMELM
                     ENYSILQKDIEEYANKRFKELFLKGKK"
     gene            complement(735..1517)
                     /gene="fdhD"
                     /locus_tag="ACJFD7_000853"
     CDS             complement(735..1517)
                     /gene="fdhD"
                     /locus_tag="ACJFD7_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HGG0859683.1"
                     /translation="MDPLFTTQILKYKGNESFTCDDTLVREIKLEIFINDEKVGALMA
                     TPVDEQALAIGYLMSENIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVVI
                     SGCGRAHTANIDPEAIEASKISSDAKFSKDEILKQMSTFYTQCELYEKTGCVHTAKLF
                     VDEKTFFIGEDIAQHNTIDKALGKARLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPV
                     LVSRTAPTCLGVMIARKFDLTLCGFARENKINIYSGEFRIHG"
     gene            complement(1685..2617)
                     /gene="fdhC"
                     /locus_tag="ACJFD7_000854"
     CDS             complement(1685..2617)
                     /gene="fdhC"
                     /locus_tag="ACJFD7_000854"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009326 - formate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0008863 - formate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009061 - anaerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HGG0859684.1"
                     /translation="MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTF
                     GKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHF
                     IAAISWVILVPTGFVMMFGEVFGGGVFVRVCKNLHAFATILFIISIIPMFLCWIKRML
                     PASYDIRWMMIVGGYLSKIKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDF
                     NSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYK
                     EEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI"
     gene            complement(2614..3255)
                     /gene="fdh3B"
                     /locus_tag="ACJFD7_000855"
     CDS             complement(2614..3255)
                     /gene="fdh3B"
                     /locus_tag="ACJFD7_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase FDH3 subunit beta"
                     /protein_id="HGG0859685.1"
                     /translation="MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIR
                     RRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCG
                     YCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVP
                     VCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL"
     gene            complement(3252..6056)
                     /gene="fdhA"
                     /locus_tag="ACJFD7_000856"
     CDS             complement(3252..6056)
                     /gene="fdhA"
                     /locus_tag="ACJFD7_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(5514..5516),aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HGG0859686.1"
                     /translation="MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELK
                     EAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMV
                     RSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAY
                     YIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANP
                     AVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIF
                     DEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTL
                     IWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENL
                     PGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDA
                     IDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIY
                     LLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTL
                     RDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGE
                     YYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPID
                     TGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARA
                     VVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPL
                     NLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPQLAKEQDIKAGDMIWVHSPEGT
                     KIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYD
                     IMCQIPETKGGLCRISKDGK"
     gene            complement(6056..6247)
                     /locus_tag="ACJFD7_000857"
     CDS             complement(6056..6247)
                     /locus_tag="ACJFD7_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HGG0859687.1"
                     /translation="MKNRREFLKKSAFALGAAGVLGSTTLALARDEERKDLVKGKSKK
                     KEVLFQRSANWENYYIKAE"
     gene            complement(6222..6935)
                     /locus_tag="ACJFD7_000858"
     CDS             complement(6222..6935)
                     /locus_tag="ACJFD7_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0061077 - chaperone-mediated protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HGG0859688.1"
                     /translation="MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTM
                     QECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENS
                     NPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINK
                     SIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEF
                     LRREANKQRRTREKSQGIS"
     gene            complement(7240..8388)
                     /gene="nspC"
                     /locus_tag="ACJFD7_000859"
     CDS             complement(7240..8388)
                     /gene="nspC"
                     /locus_tag="ACJFD7_000859"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0045312 - nor-spermidine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HGG0859689.1"
                     /translation="MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFA
                     FSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIDEIASLSHHIVF
                     NSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTI
                     EGLHFHALCEESADALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIAL
                     CKNFSDKYSVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIM
                     PYTSEVLNARILATRENEKISDLKENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKI
                     VFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN"
     gene            8512..10053
                     /gene="cueO"
                     /locus_tag="ACJFD7_000860"
     CDS             8512..10053
                     /gene="cueO"
                     /locus_tag="ACJFD7_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HGG0859690.1"
                     /translation="MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTS
                     FINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKT
                     LFYTYNGLVPAPKIQVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAG
                     EERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMI
                     SDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNTTAARYLN
                     LRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDK
                     MMVKEEPNTLFLANINLKKENVELPKKLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGK
                     SESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFEL
                     ISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGN
                     LEVKE"
     gene            10055..10276
                     /gene="moaD"
                     /locus_tag="ACJFD7_000861"
     CDS             10055..10276
                     /gene="moaD"
                     /locus_tag="ACJFD7_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HGG0859691.1"
                     /translation="MVKVEFLGPINKDNLELEVKNLKELKEILQKDESLKEWLELCAV
                     SLNDEIIFDENTKLKTGDKIALLPPVCGG"
     gene            10277..10723
                     /gene="moaE"
                     /locus_tag="ACJFD7_000862"
     CDS             10277..10723
                     /gene="moaE"
                     /locus_tag="ACJFD7_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HGG0859692.1"
                     /translation="MEHFTLYQDSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGG
                     IEALSFDIYEPLLKKWFNEWQKRVDFDGITLLFAHSIGDVAVHESSYFAGILSKQRKL
                     GLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG"
     gene            10727..11917
                     /locus_tag="ACJFD7_000863"
     CDS             10727..11917
                     /locus_tag="ACJFD7_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HGG0859693.1"
                     /translation="MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKN
                     QPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSD
                     TLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAEL
                     GFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFP
                     LLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRH
                     IKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTP
                     YLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDI
                     IFMP"
     repeat_region   12030..12330
                     /inference="COORDINATES: alignment:crt:1.2"
                     /inference="COORDINATES: alignment:pilercr:v1.02"
                     /rpt_family="CRISPR"
                     /rpt_type=direct
                     /rpt_unit_range=12096..12132
                     /rpt_unit_seq="agttttagtccctttttaaatttctttatggtaaaat"
     gene            complement(12475..12906)
                     /gene="cas2"
                     /locus_tag="ACJFD7_000864"
     CDS             complement(12475..12906)
                     /gene="cas2"
                     /locus_tag="ACJFD7_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004521 - RNA endonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0043571 - maintenance of CRISPR repeat
                     elements [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HGG0859694.1"
                     /translation="MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFS
                     VYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNE
                     TNLTLFDIDSHGEFKYKNSNNEEIQLNKKQEKYHQQNLFEF"
     gene            complement(12899..13789)
                     /gene="cas1"
                     /locus_tag="ACJFD7_000865"
     CDS             complement(12899..13789)
                     /gene="cas1"
                     /locus_tag="ACJFD7_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004520 - DNA endonuclease activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0043571 - maintenance of CRISPR repeat
                     elements [Evidence IEA];
                     GO_process: GO:0051607 - defense response to virus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HGG0859695.1"
                     /translation="MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINII
                     VLESLQVSLSSALFNAFARHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSA
                     QKKAILWQKIIKNKILNQAFVLKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYF
                     KTLFGVSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALC
                     DDLIEVFRASVDDCVLKLKGESEFLSKDDKRELISNLQSKINFDGQNYPLNRAINHYV
                     ANFKNALLYEDELKIVKFDD"
     gene            complement(13786..16740)
                     /gene="cas9"
                     /locus_tag="ACJFD7_000866"
                     /gene_synonym="csn1"
     CDS             complement(13786..16740)
                     /gene="cas9"
                     /locus_tag="ACJFD7_000866"
                     /gene_synonym="csn1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344900.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004520 - DNA endonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0043571 - maintenance of CRISPR repeat
                     elements [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
                     /protein_id="HGG0859696.1"
                     /translation="MARILAFDIGISSIGWAFSENDELKDCGVRIFTKVENPKTGESL
                     ALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPY
                     ELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQ
                     SVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSF
                     LKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLN
                     NLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKK
                     YKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKD
                     HLNISFKALKLITPLMLEGKKYDEAYNELNLKVAINEDKKDFLPAFNETYYKDEVTNP
                     VVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDA
                     ELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRS
                     FDDSYMNKVLVFTKQNQEKLNQTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNY
                     KDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAK
                     SGMLTSALRHTWGFSAKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELY
                     AKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEF
                     YQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFAL
                     KVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPELVYFNAFTS
                     STVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVT
                     KAEFRQREDFKK"
     gene            16943..18018
                     /gene="dcuC"
                     /locus_tag="ACJFD7_000867"
                     /pseudo
     CDS             16943..18018
                     /gene="dcuC"
                     /locus_tag="ACJFD7_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831351.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015556 - C4-dicarboxylate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015740 - C4-dicarboxylate transport
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
BASE COUNT         5954 a         3253 c         2453 g         6474 t
ORIGIN      
        1 agatttattt ttttcctttt aaaaacaatt ctttaaagcg tttattagcg tattcttcta
       61 tgtctttttg caaaatagag taattttcca tcaattccat agctctagga gtaagttttg
      121 ttcctgattc tttagagcgt ccttgtcttg tgctaactaa aatttcttga gaattttttt
      181 gtaaggtttg taaatgcatc caagcttttt tataattaat ccccataagt ttagaagcat
      241 gtaataaact acctgtttgt ccgataagtt ctaaaagttc tgtttttcct cgaccaaaaa
      301 gcaaatctcc atccgcattt tcaatccaag tttttgttct tactataaat tgcttacctt
      361 ttttttcttt aaaacaacca agttgacaat actttacatc aaccttataa gtttttaaag
      421 ctgaacgcat acttttaagt ccacaacctt ctttagcaat atctcttgca tctttacaaa
      481 aaattctacg cttttcatct aaactaggtt ctattttttt aagcacttca atctttgctt
      541 tttcaaaatc taaatgtcca aattgcccca actcgcaatt atcaattctc atgtgatttt
      601 catcggctaa ttgtccgatt ttttctatat ttatattaaa tttctttgca attttaaaag
      661 ccgtaccaca atctaatttt tcattgctat ttaacaattc tctcatatat gagatgattt
      721 ctttttcttg atttttatcc atgaattcta aattctccac tataaatatt gatcttattt
      781 tctctagcaa aaccacaaag cgttaaatca aattttcttg ctatcataac ccctaaacaa
      841 gtaggagccg tgcgtgaaac aagcactgga attttatgca taactgcttt agctaccatt
      901 tcagaactta gccttccact aaccattaaa aaacattgac ttaaatcaac cccagctaaa
      961 cgcgcttttc ctaaagcttt atctatggta ttatgctgag ctatatcttc acctataaaa
     1021 aaagttttct catctacaaa aagcttagcc gtatgcacac agcctgtttt ctcgtaaagc
     1081 tcgcattgag tataaaaagt actcatttgt tttaaaattt catctttgct aaattttgca
     1141 tcagaactaa ttttactcgc ttcaatagct tctggatcga tattggcagt atgtgctcta
     1201 ccgcaaccac ttataactac accttcagca ttaagctttg ctaaattttc tttatcaatc
     1261 tttgctttaa tatgcacact cataccatca tcttttgttt ctatgctctc aatatcgctt
     1321 actttcgcaa tgatattttc actcattaaa tatcctattg ctaatgcctg ttcatctaca
     1381 ggagttgcca ttaaagcacc tactttttca tcattaataa aaatttcaag cttaatttca
     1441 cgcactaaag tatcatcaca tgtaaaagat tcattgcctt tatattttaa aatttgagtt
     1501 gtaaataacg gatccatacc ttatccttta aatatcttta aataatatta tatcaaaaaa
     1561 aacataaata acaaattcac atatggaaaa atagatttta gattcaactt ataaaataaa
     1621 attcgttcta tttatttcaa aaaagcttaa aactaccgct atgcaataac atagcggtta
     1681 aagattaaat ttttacatta ggatcataag aaaaactagg ttcaatttgc tttttattgc
     1741 ttaattcttt ataccaataa gaatgtaaaa tataaacctc ttcttcttct ttataaccac
     1801 taatcataga atggatactg cctttgattg caaatactgc catataaata tgcacaccaa
     1861 aaaacactgc acacactata cccaagaaat tatgcactat agctgaaatt ctcaaaagtt
     1921 caatttgagt taaaccaaaa agaccttgaa ttgccgtgga attaaaatca agaaaataca
     1981 taaatccacc tgtaattatc atcaaaaatc caccaaatac agctatataa taccaagatt
     2041 tttgaccaaa attaaactta cctgcaggta caggacgttt gattttactt aaataaccac
     2101 ctactatcat catccatctg atatcataac ttgcaggaag cattctttta atccagcata
     2161 aaaacatagg gattatagag atgataaaca aaatcgttgc aaaagcgtgt aaatttttac
     2221 aaacccttac aaaaactcca cccccaaaaa cttctccaaa catcatcaca aaaccagttg
     2281 gcactaaaat cacccaagaa atcgctgcga taaaatgaaa aagtctttca aataatgtaa
     2341 aagcataaat tttctttcca tcgtgtgaaa attgcttagg tcctataacc atataatgca
     2401 aagcaaatgc agacaatacc gcaataacag cgattaaagc tatagtagct atatattcac
     2461 cttgcaaagt tgtccaaagt ttgccaaaag tatcataatt tgggatattt gtaatacgat
     2521 gaaaatccca aatttgagta tcttgtccca ttctctcgct accataagca aataaactca
     2581 ctacgcttaa taaaagcgtt acaaatactt ttctcataag cgttcctttc ctgtgtaagc
     2641 aatcttccat tccaaacttt ccgaaggatt tggaatgcca taatttctat tcataagtct
     2701 attatgataa atctcttcta ttttagaact ttcacctact aaaagtgctt ttgtcgaaca
     2761 catcgcagca catacaggga cttttccttc tgcgatacga ttttgaccat aaagttctct
     2821 ttctttttct gaattcgttg cttcagggcc acctgcacac atagtacatt tatccataat
     2881 gcctttattt ccaaaaacac tatcttttgg aaattgtggt gcaccaaaag gacaagcata
     2941 aagacaatat ccacaaccta tgcaaatttc tttatcatgc aaaacaatac catcagcacg
     3001 gatgtaaaaa caatccacag gacaaacgat agaacaagga gcatcatcac aatgcataca
     3061 agaaatagaa gttgaaactt cttttccttg aattccttca tttaaagtaa tcacacggcg
     3121 gcggcgaata tgaataggaa gctcatgtgc ttcatcacaa gctaccgcgc aaccattaca
     3181 atcaatacaa cgctcattat cacaaaagaa tttcaagcgt tctttttcta aatttgcaaa
     3241 atttacctta ctcattttcc atccttactg attctacaaa gtccaccttt agtctctgga
     3301 atctgacaca tgatatcata accataattt gttaccgtat tagcactttc tccgcttgca
     3361 taaggcttag ttccttctgg gaaattgtgc gttaaatcca cgccttgcat aactcctgta
     3421 aaatggaaag gcaagaaaat catatctttt gctacacctg gattaacctt cactcttaca
     3481 tgaattttag taccttctgg agaatgcacc caaatcatat ctcctgcttt aatgtcttgc
     3541 tcttttgcta attgaggatt gatctcacaa aacatttcag gtgttaaacg cgttagatac
     3601 atagatgctc tattttccat acctgcacca tttaaattca caagtcttgc agtaacaaga
     3661 ttaagcggga attctttaga ataatcctta gcttgttgca cagaaacaaa tttagtatcc
     3721 acgcggtaaa gcgctttttg atcttcaaaa cttggatatt tttgcaccaa atcgtttctt
     3781 ggagaatgta aaggctcacg gtggagtgga attttatctt taaaagtcca aactacagct
     3841 ctagctttag catttccata aggaactatg cctttttcta tacatttagt tgctatgata
     3901 ttgctatcat cataagacca agttgatccc attttttctt tttcttgagc acttaaagta
     3961 atacctaaaa ctttttctat attatcttta gtaatttgtg gataacctgt atcaataggt
     4021 gaatttaaag gtgcattttt agcaagtaaa ctctctcctt catattcaag tccaaaattg
     4081 tttctaaagc ccataccacc ttttgctact tcaatgtcgg tattataaag cacaggagaa
     4141 cctggatgct tatcactcca acaaggccaa ggaagcccgt aatactcgcc agcaacttcg
     4201 tcttttcctt ctaaagttac ctcatcaaat ttatcccagt ataaagtatg ctttttaagc
     4261 ctttcaggac tccaaccatt aagccctata cttctaactg cttttgcaat ttctcttgtt
     4321 gcattttcag gccaaacaat ctcacctttt tcatcgcgta aagtcttggt aaagtcttca
     4381 taaaaaccta attttttagc aagctcaaat aaaatttctt gatcttccat gctttcataa
     4441 agtggatcta caactttaaa tctccattgt ccgctacgat ttgttgctgt tacacttccg
     4501 cttgtttcaa actgtgttgc tgcaggtaaa agataaattc catcttttct ttctgcaata
     4561 atccctgctt catttacaaa aggatcggct aaaactaaaa gctctaaagc ttccaaacct
     4621 tctttaactt ttacttgttg tgcagtcgaa gtaataccat ttcccataac tactaaagct
     4681 tttaaaggcg ttcctgcatt atcgatagca tcatttccat cttttccatt taaagccgct
     4741 gcccaccatc tagcaagtga aagcccagtt ttatgcatcc aatctttgct tacaaaattt
     4801 cctaaaagcc actcataatc cacaccccaa attttggcat agtatctcca agtcgcttca
     4861 tttaaaggat aataacctgg taaattttcg ctcaaacaag ccatatctga agcaccttga
     4921 acattatcgt gtccgcgtaa gatattaact ccaccaccaa atttacctat atttccaagt
     4981 accatttgca caataggtgc taaacgtgta tttgaagttc ctacagtatg ttgagttaaa
     5041 cccatagccc aaataagcgt agttggtttg tttttagcta cttcgtgagt gatttgcacc
     5101 aaaagttctt tagagatccc tgtaacattt tccacttctt cagctgtcca ttttgctgct
     5161 tcttcacgaa ttttatcaat tccaaaaact ctttcatcaa gatattttgt atcttccaag
     5221 ccttcatcaa aaatgatttt taacattcca tacatgaaag caatgtcagt tcctggacga
     5281 attcttgcat aaatatccgc ttttgctgca ctttttgtaa atctaggatc tacaacgata
     5341 agctttgcac ctttttcttt tgcttttaag aaatgtctaa aacccacagg gtgatttacc
     5401 gctggatttg ctccaatgat aatgatacat ttacttcttt ggatgtctcc aagatggttt
     5461 gtcatagcgc cataaccaaa tgtattcgcc acaccggcga ctgttgcgct gtgtcaaatt
     5521 ctagcttgat gatctacatt gttcgttcca aaaaatgctg caaattttct tatataataa
     5581 gcttgttcat tattaagttt tgcagaacct aaaaacataa cactttcagg attttcttta
     5641 cgataagcag ctagtttttc tccgatctca cttaaagctt gctcataact tatgcgtttc
     5701 cattctccat tttctttttt cataggatat tttaaacgca catgtgaacg caccatatcg
     5761 atcatatcag atcccttgca gcaatgtcca cctgaactca caggatgatc ttgagcgatt
     5821 tcttgacgca cccaaacacc attttgcact tctgcaataa tcccacagcc tacagaacag
     5881 gctgtacaaa ctgtttttac ttttttacta ccttcataag cttctttaag ctcatcagca
     5941 ctcgcttctc ttaaagtttc acttctagca agcaacggtg ttgctaggct tgaaagtgct
     6001 gccattttaa gaaaagaacg acgcgtaagc ttgatatttt cacctacact tgacattact
     6061 cagcctttat ataataattt tcccaattag cacttctttg aaaaagcact tcttttttct
     6121 tacttttacc tttaaccaaa tcttttcttt cttcatctct agctagagct aaagttgtgc
     6181 taccaagcac tccagcagcc cctaaggcaa aagcggattt tttaagaaat tccctgcgat
     6241 ttttcacgag tcctcctttg tttatttgct tctcttctta aaaattctga acgcgataga
     6301 tcgttttgca cttttttaga atttattttt gcaggttttt ccacttcaaa gcaaagtctt
     6361 tcaaattcca taaaagccga tgcaatactt gcaatttcct tatataaatt cgcattttta
     6421 ttcatgaaaa catcgcctaa aaactcatca atgcttttat tgatcacttt ttcaaaaagc
     6481 tctttggcta aatcatcttc attttgcctt aaaaattcac tcatcaacaa taaacaaaat
     6541 ccaacactat cttcactttc tttaaaaaat ttttcattgc gtcttatttt acttttgact
     6601 aaaatttgac gcacgcaaag taaaggattt gaattttcaa aaccttcttc tatgtaagaa
     6661 aaagtcgttg gaatgctatt tttaagactt aaaaaaagca aatcatattc tttaaaaaat
     6721 gcttgtatag aattttcatc atctaaatgc ttaagcaaga tatcaaaatt tgattttaaa
     6781 ttttcatcaa ataaacattc ttgcattgtc tttaaatact cttgtaattt tgacaatctt
     6841 tcttcagaaa atgaaaaaac aaaaagctct cctagacatt gataataaag acttctagct
     6901 aatcttaatt tttccaaatc cattaaagct cccatgcatt caaaattttc aaaaatagct
     6961 ttaaattttg cttgaatgaa tattatgcaa aatataccta atattcattt taaagccgat
     7021 ttttaaatcg atttatctta atactatttg atttaaaaat cactgaattt caataaaatt
     7081 ccacaaggat ttaaaatatt aaaaaatcat acaaaagtat taaaaattag atatttgagt
     7141 tgattttata tttgaaaaaa ataaaatact ttgcataaaa tttacatctt tgattctctt
     7201 ccgagtaaaa ttaacatttt atgcaaatta taaataatac taatttctta aagaataatc
     7261 cttataagaa aattctctta tcatttgaag ttcatttttt gcatttaaaa gcatgagatt
     7321 tggaagtctt ataccattaa aagttgtgtt tttcacaatg gtgtaatgaa tttgatctaa
     7381 aaaaacaatt ttatcgccga ttttaagctt tttatcaaag gcatattctc ccattacatc
     7441 acctgctaaa caagtatttc cagtaagtaa ataggcaaat tcgttttctt ttaagtctga
     7501 aattttttca ttttctcttg tggctaaaat tctagcattt aaaacttcac ttgtataagg
     7561 catgatgata gtatctggca tatgcgcttc gcttgaagtg tctaaaatag caatttgttt
     7621 ttcattttct atgatatcta ctacactagc cactaaattt cctgtttgcc aacctaccgc
     7681 ttcacctggt tcaagataaa cttgcacgct atatttatca ctgaaatttt tacacaaagc
     7741 aataagtttt tcaacatcat agcctttttt agtgatgtga tgccctcctc caaaattcac
     7801 ccatttcatt tgccctatcc atttgccaaa tttctcttca aaaaccttta aaacagcttc
     7861 taaagcatca gcactttctt cgcaaagtgc gtgaaaatga agtccttcta tggtacttaa
     7921 atccacattt tcaaaatctt tagcacgaat tccaagtctt gagtatcttc cacaaggatt
     7981 gtaaagttct tttggggcta gagaaaattc aacattacaa cgaagaccta aggaattttt
     8041 ttgtgtttta gcttgaaatt tatgaaattg ggctaaagag ttaaacacta tatgatgaga
     8101 taagctggct atttcatcga tttcatcttc tttaaaagca ggcgaataag tatgaatttc
     8161 tttatccatg tattctttag caaattttgc ttcccaaagt ccgctacaag tacaaccttt
     8221 taagtattct ccaacaattt tcatcgctcc tgaaaaagca aaacctttta aagctaaaag
     8281 cactttagca ccactttttt cgccaacact tgctaaaagc tcacaatttt ttcttaattt
     8341 atcttcttct aaaatataag ctggagtttg aattttttca taaaacatta tttttccttg
     8401 attaaattgc taaaatcata acaaaattaa accaaatttt caaaataaat atttactaaa
     8461 gttaaaaaaa taatgactat aatacaaaaa atcaagcaaa aggaaaaact aatgaataga
     8521 agaaattttt taaaatttaa tgcacttact ctagcaagta tgggtgtagc ctatgcaaat
     8581 cctatgcacg atatgcactc catgcataaa aatcattcta taaatcatga cttagatact
     8641 tcttttataa actttgctcc aaaaaattta aagcttttag atccaaaaca attcccccaa
     8701 ggagaaattt taaaagcctt gcctttactc aaaaatgaaa gtaaagaaaa aaatattttt
     8761 cgtgctaccc tagaaatcaa agaaaatcat atagagctta tcaaaggtaa aaaaacctta
     8821 ttttatactt acaatggcct cgtgcctgct ccaaaaatac aagtttttga aggagataaa
     8881 cttgaaattt tagtcaaaaa caaactcaaa gaagctacaa ctatacattg gcatggcgtt
     8941 cctgtgccac ctgatcaaga tggaagccca catgatccta tcttagcagg agaagaaaga
     9001 atatatcgtt ttgaaattcc tcaagatagc gcaggaactt actggtatca tccacatcct
     9061 cattatacgg cttctaaaca agtttttatg ggtttagcag gggcttttgt gatcaaagca
     9121 aaaaaagatg ctttaagtca tttaaaagaa aaagatttga tgattagcga tttgcgtctt
     9181 gatgaaaacg ctcaaattcc aaacaataac ctaaatgatt ggctaaatgg tagagaagga
     9241 gaatttgtac tcatcaatgg acaatttaaa cctaaaatca aactcgccac aaacgaacgc
     9301 atacgcattt ataatactac tgcagcaaga tatttaaatt tacgcataca aggagctaag
     9361 tttatacttg ttggtactga tggtggactt atagaaaaag ctatttataa agaagaactt
     9421 ttcttaagtc ctgcttctcg tgtagaagtt ttaatcgatg ctccaaaaga tgggaatttt
     9481 aagctagaaa gtgcttatta tgatagggat aaaatgatgg taaaagaaga acctaatacc
     9541 ctatttctag ccaatattaa cctaaaaaaa gaaaatgtag aacttccaaa aaaattaaaa
     9601 attttcaaac cttcagaaga acctaaggaa tttaaagaaa taatcatgag tgaagatcat
     9661 atgcaaatgc atggtatgat gggaaaaagt gaaagcgaat taaaaatcgc tcttgcgtct
     9721 atgtttttaa tcaatggcaa aagctatgat ttaaaacgca ttgatttaag ctccaaactt
     9781 ggagtagttg aagactggat agtgataaat aaatctcaca tggatcatcc tttccacata
     9841 cacggcacgc aatttgaact catctcatca aaactcaatg gcaaagttca aaaagccgaa
     9901 tttagagcct taagagatac tataaatgtg cgtcctaatg aagagttaag acttagaatg
     9961 aaacaagatt ttaaagggct tagaatgtat cattgccata ttttagaaca tgaagattta
    10021 ggaatgatgg gaaatttaga agtaaaggaa taaaatggta aaagtggaat ttttaggccc
    10081 cataaataaa gataatttag agcttgaggt aaaaaattta aaagaattaa aagaaatttt
    10141 gcaaaaagat gagagtttaa aagaatggct agaactttgt gctgtatctt taaatgatga
    10201 aatcattttt gatgaaaaca ctaagttaaa aactggtgat aaaatagcac ttttaccgcc
    10261 agtttgcggg ggttaaatgg aacattttac actctatcaa gattctttag atattcctaa
    10321 aatttatagc caatggtatg aatttgccaa ggataaaaac tgcggtgctt tgctgacttt
    10381 ttgtggtatt gtgcgtgaag aaggaggcat tgaggcactt agttttgata tttatgaacc
    10441 gcttttaaaa aaatggttta atgagtggca aaaaagagta gattttgatg gtattacctt
    10501 gctttttgct cactctatag gcgatgtggc ggttcatgaa agctcttatt ttgcaggaat
    10561 tttaagcaaa caaagaaaat taggacttaa acttcttaat gaatttgttg aagattttaa
    10621 agcaagtgcg cccatttgga agtatgatgt gataaacaaa gaaagaattt atgccaaaga
    10681 aagatcaacc aagctttgcg gtgcaggact tttaaaagga taaaaaatgc taatgtctta
    10741 tgaagaaagt ttaaaaattt tacattctca tatcaaaact tatgaaaaga ttgaaaaaat
    10801 agctcttaca gagtgtttag gacgcatttt agctcaagat ataaaagccc ctaaaaatca
    10861 gcctgaattt ccaacctcgg ctatggatgg ttatgcgatc aaatttgaag atcaagacaa
    10921 gcctttaaaa attttaggcc tcacacctgc gggtactatg ccacaattta gcgtacaaaa
    10981 tggcacttgt gtaaaaacct ttacaggctc actcatgagc gaaggaagcg atactttagt
    11041 ccctgttgaa aatatacgca tagaaaataa tactcttttt atagaaaaaa aagttcccca
    11101 agcttttgcc gtgcgtgcgg taggagaaaa ctataaaaaa gatgaaattt tactcaaaaa
    11161 aggcacaagg ttaaattata gcgagatagc tcttttagct gaacttggat tttttcacat
    11221 tagtgtgttt ataaagccta ttgtaggggt tttaagtagt ggaagtgaga tcaaagatct
    11281 aggagaagcc ttggaaaatc ctgctcaaat ccgctcttca aatcatatcg ccatagctaa
    11341 tttagctaaa aatttaaatt gcgatacaag ggtttttcct cttttaaaag atgatgagaa
    11401 agccactttt tccacccttg aaagtgcttt gcaaagttgt gatattttgg ttacaacggg
    11461 cggggtttct atgggagatt ttgacttttt aaaaaaagcc atcaaagaat acgaaatcat
    11521 catcgataaa gccgacataa aaccaggtag acatatcaaa atagctaagg ctaatgaaaa
    11581 attcatcatc gccttaccag gttttcctta ctcagctatg gtaatgttta atctttacac
    11641 aagagagatt ttaaactctt ggttacttca acctaaagac tatatttgca aagccttttt
    11701 acaaggaagt tacaagaaaa aaacacctta tttggaattt gtcgcttgca atatagagtt
    11761 taaaaatgga cgcattttag ccaatcttga aggcaaaaaa gaaggctcta gtgcgattat
    11821 aaacaatctt aacaataaag ctgcccttat ggtggtgcca aaagaatgtg aaatgttaga
    11881 aaatgaaagt ttagtagata ttatctttat gccttaaaat tatttaaata attttatttc
    11941 gattttaatc aaccctaaat ttcaataagt ttcaaattcg caacctcctt ttagtggagt
    12001 aattagccct agcggagttt caatccacta gggttagtcc ctttttaaat ttctttatgg
    12061 taaaatgcat tgctttacta catagccagt cgtgtagttt tagtcccttt ttaaatttct
    12121 ttatggtaaa attatattac aaggggttat tttaaatgcg tagttttagt ccctttttaa
    12181 atttctttat ggtaaaatat aataccgaat aaaaaagtaa gttttgatgt tttagtccct
    12241 ttttaaattt ctttatggta aaataaattt tctttagcat aaatggcggc acagttttag
    12301 tcccttttta aatttcttta tggtaaaata gatatttacc agataatgaa aatttcgggg
    12361 ttttttgatg aaaaatagca aaaattatgc tataatctca ataagaaatt taaaaaggga
    12421 ctaaaataaa gagtttgcgg gactctgcgg ggttacaatc ccctaaaacc gcttttaaaa
    12481 ttcaaataaa ttttgctgat gatatttttc ttgttttttg tttagttgta tttcttcatt
    12541 atttgaattt ttgtatttaa attctccatg actatctata tcaaaaagcg ttaaattagt
    12601 ttcgttatta actttttcat taaaaactat gccaccaagc aaaagctcca ttttatcaaa
    12661 ctgcttttca gtgatgatta aagcccttac atttccataa ggtggcaaaa tcttttttac
    12721 attttcaata gaactttttg cagaacttaa acccttgcaa atacgcatat aaacgctaaa
    12781 ttgtagcata aaataaccca attttataag attgtttcta aatttacttg ctagtttttg
    12841 ctctttttta cttttagttg gcacatcaaa catcaaaagc acacgcataa atttatcttc
    12901 aatcatcaaa ttttactatc tttagttcat cttcatacaa taaagcattt ttaaaatttg
    12961 ccacataatg atttatcgct ctatttaaag gataattttg cccatcaaaa ttgattttgc
    13021 tttgtaaatt gctaattaac tctcttttgt catctttgct taaaaactca ctttcaccct
    13081 taagctttaa aacacaatca tcaacactag ccctaaacac ttctatcaaa tcatcgcaaa
    13141 gcgcaaaaga attataaata ttatcgtgct ttatgccaag ccaaggcaaa agcccactta
    13201 tacaaactgc tctaataata caagctctaa tgattgcata gccataattt aaagcagaat
    13261 tttcaaagca aagctcatct cttgaaaaag aaacgccaaa caaagtttta aaataaagcg
    13321 ccgccgcaac agcttcgata tttttactat catttaagct tactttttta gccaaattta
    13381 taagctcatt gctttgctct attttattgt gttttttcaa aacaaaggct tgatttagga
    13441 ttttattttt aatgattttt tgccataaaa tagccttttt ttgagcactt acattcattt
    13501 gctcttttgc gatttttgca ctttgaaaat gccctaaaaa aggagtaaaa acaccattta
    13561 tactatgagt ttcatcgcag gttagtaaga tgattttatg ccttgcaaaa gcgttaaaaa
    13621 gtgcggaact caggcttact tgtaagcttt ctaaaacgat gatgtttata tcttttaaaa
    13681 acaatttggc tatattttca tcttgcttaa tcacaagatg atttaactct aaatttagct
    13741 tggcattaga gctaataagc agtgttttaa aagcttcatc gtaactcatt ttttaaaatc
    13801 ttctctttgt ctaaactcag cctttgtcac ttctccaagt gctgaaacta tgtatttttc
    13861 aaatactttt agattttgaa ttcctatgct ttttgcgatt acttcttttt catttgcatt
    13921 tttaaacaat attttttgat ttttgcttag cgtttcaaat ttattatcgt gttttgaaac
    13981 aatcaaacta acagtagagc ttgtaaaagc attaaaataa acaagttctg gctcttgcat
    14041 atctttagtt tgaattaaaa tcaaactatc tttgtataaa gaaaagcaaa actcataatt
    14101 ttcatccatt aaaatccagt cttttatctc acctttttta cttcgtgcta cagctttatt
    14161 tggtaatact tttaaagcaa aatccatagt ataaattggc acagcataaa atttatttgt
    14221 ctttttgtgt ttaaaaatat ccactctaaa catatcgcca tttttaacta ttttaccatt
    14281 tactttgcga attttaccaa gctctagggc ttttaaaact ccttcttttc cgccgtatga
    14341 ttgatagaat tcttcttctt ttctaaatgt ttcttcatgt aaagctccac ttggcttttt
    14401 tctctcaggt tttgagacaa aaatttcatc aattttatct aaaacctttt gcctaaaacc
    14461 actaaaaggc tcaaaaaact tccttttgtt tttataatct aattcactaa ttttttttgc
    14521 ataaagttct gcactgttgc tttcttgctc ttttttaaaa tctgaaaaag cctttacgat
    14581 agagttgttt gcataagcaa taattactgc atcgatggcg tgatgaagat ggttatttct
    14641 atccttagcg ctaaagcccc aagtgtgtct taaagccgat gtaagcatac cgctttttgc
    14701 ttctacatgc acttttgagc ctttttgtgt gtcgtttaac tttgtatttt catcatcgct
    14761 taaaggtaaa aaatctaaat aatctttagt gtagtttaaa acaagccttg cgatgtagcg
    14821 agtatcgttt agatttctat ctttaaagtc tttttgctct ttgtctttgt aatttttatc
    14881 taaaattctt ttttgctttt tagtaggtaa attttttgct aaaacttcaa ttttctgcca
    14941 ttttgcacta tcattgccaa aggcttcaaa gggggtttga ttaagttttt cttgattttg
    15001 cttggtaaaa actaaaactt tattcatata agaatcatca aaacttctag aataagggta
    15061 aatgtgatca atttcaagca ttttttcatc ttgcaaatca ctaattttaa tcttttctcc
    15121 actataagca caaaattctt tttgttcttt aaataatctt aattttaaaa tatttttgct
    15181 atttattttt aagcctagtt tttcacattc aagttcggcg tcttttttgg ccttgtagtt
    15241 ttcgttttgc tctttttcta ttttagctct ttggctgtga tttttaccta cttctcttgc
    15301 taattcaatg tttattttat gcactttacc gtatttttta agtaaggcat ttaagacctt
    15361 tctatattct ttaatcgccc ttaaaaccac aggattagtt acttcatctt tgtaataagt
    15421 ttcattaaat gcgggtaaaa agtctttttt atcttcattg attgctactt ttaaattaag
    15481 ctcattgtaa gcttcatcgt attttttacc ttcaagcatt aaaggagtga taagttttaa
    15541 ggctttaaaa cttatattta aatggtcttt aaattccaat ttgcttaaac tatcaatttg
    15601 attttgattt aaatcatatt ttgctaaagc ctttttaagt ttaatctcat cttttataag
    15661 ggtaatatct tttgctattt catttaaatc atcttggctt aaattatgct cacctagggc
    15721 ttttataaat tctttgtatt ttttaaactc aataaaataa gttccttttt ctcctttaaa
    15781 ttcataatca tcgcttaagc ccaaaagctt ttttgtttgt ttataagtta gagtgccgtt
    15841 ttttaaaact tcatttaaaa gggcgtttaa atcatctttt gtatataaaa ttccttcagt
    15901 atttttaaga ttgtttaaaa gattgataat tcttgtaagt gctacaaaca taaaagctaa
    15961 gggcgaattt tttggcgctc ttttttcatc ggtaaaaaaa ctacaatttc ccaccaaatg
    16021 agaaaaatct tttaaagccc ttttataaaa tgctacacta agcacctctt cttcaaattt
    16081 ttttaaaaaa gaaaagccaa attctctttg ttttttaaaa ataagcttta attcatcttt
    16141 taaaaaactt tgcgctatgc agcgttcata actttctttt ttatttctaa catttgtaaa
    16201 ttctttggaa ttttctttga atttttgaaa atactcttta taaagatact cgcccacact
    16261 ttgataattt gctagttttt cttcattttg cttgatagct tttaaaatcg cacctttttc
    16321 tttatcatca ctatttttaa tatcatcata gccacgcctt tttgcaatat gtaaaatcac
    16381 tcttgcaaaa tcttgcttac ttaaaagctc gtttaaagct ctaaatctta actcataagg
    16441 gctaattaaa gatcctttat aagccttggc taaactttca tcaaagcttt gataatcttc
    16501 gtaatttaac ttaaattcat ttgcgattaa atgttttaag tgatttagcc ttgctttgcg
    16561 tctagcaagg cgttttctag cacttcttgc aaggcgtctt ggcaaggcta aggattctcc
    16621 tgttttggga ttttcaacct ttgtaaaaat cctaactcca caatctttta actcatcatt
    16681 ttcactaaat gcccagccaa tagagcttat tcctatatca aatgccaaaa ttcttgccac
    16741 actagatcct ttttaatatt tatgatttgt gtataattat aatacaaaaa tcattttttt
    16801 aaacaaacat aaacttttca gtaaccaaac tatacatatt attaatttta taatgcaaaa
    16861 aataagtaaa attttaaatg aaaaatattt attagttaaa ttttagctaa aataaaagct
    16921 aataataact ttaggagaaa tcatgccaat ttttatgata tgttctacac ttttagcggt
    16981 aattgtcgtt gcttattata tactaaaata taatctcatt tttgtatttt tctttcaaat
    17041 attatcttgc ttatttttgc tttttacatc acaggaacac ctataccaaa agccccaagc
    17101 agagagcata caagcttttt aaatgtttta cttgatagtt atcttttatc acagcgattt
    17161 ttaaaagtca gctttctgga gtagggttta ttatcatgag tgtggcaggc tttactgctt
    17221 acatgaaaca tatcaatgct tcggcaaaac ttgctttttt agcaaataaa ccctcaggaa
    17281 aaatcaaaaa ataaatactt aattttaagt ggaacttttg ttgttggaat ggctttaaaa
    17341 atcgtcattt ctagctatgc tggattgctt ttgttagcat gtatttatcc tgttttaatc
    17401 tcacttaaaa tccgtcctat tacagctgaa agatggaaat tcaatcaata tggcggatat
    17461 ggtaggacaa agtgataatg tcgtaggact ttctttaaat tatcaaattt atagtgtgat
    17521 tacttatgtt gtagttaatt gccatcttga ttccttttta ttctacttgg attgataaaa
    17581 gagataaaga aaaaggtgtt ttaaatgatg aagttgaaat tccgcaaatc attgatccta
    17641 aatgccctac ttttttacat actctttcct tggttacctg ttgtattttt atttatagcg
    17701 tattttttta ctatcaagct cgatgttgta acagcaaatt ttgtaagcat ttctttagtt
    17761 tttcttgttg aatttgcaag acacagaaat gctagaaaat taggcgaaga tatgatggtg
    17821 attttaaaag ctatggctga aatttttatc tcagtcgtaa gcataatcat cgccgctgga
    17881 gtatgtgcta aaggcattaa agcacttggt ggagttaata tccttgctaa cgcggtttca
    17941 aatcttggaa caggaaattt tgcatggttt gaaattcttt tgagtatagc tattttaagc
    18001 tttttagttt attttgccaa tgctatattg aataggattt gcatcaaaat ttaaaagtat
    18061 aaatattgaa gaaagttttt tgcaagttct atccaaatct tttgtgaaaa aatcaaaccc
    18121 tctatattta ctat
//
LOCUS       DBBXPZ010000032        17593 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.034, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000032 DBBXPZ010000000
VERSION     DBBXPZ010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17593
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.034"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            6..1073
                     /gene="hemW"
                     /locus_tag="ACJFD7_000868"
     CDS             6..1073
                     /gene="hemW"
                     /locus_tag="ACJFD7_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HGG0859697.1"
                     /translation="MHFYIHIPFCESKCNYCAFTSLKKNDYEKAYFKALKEDIVFQLK
                     QFNIQSNQIKTLFIGGGTPSCVNAYNYEDIFKILYPLLDKNVEISCEANPNSATLNWL
                     KNMKNLGVNRISFGVQSFHPKKLHFLGRIHNQEMIIKTLENANKVGFKNINLDLIYDT
                     KLDNKKMLEFELLHLKQIKDLITHLSAYNLTIESNTAFAKKEHFKKNAPNLMKFFIKQ
                     LLELDFFQYEISNFSKTKAQICKHNLAYWQGKNYLACGLSAVGFYENKRFYTAKNLKN
                     YIENPTFRSIEQLSSKDLNLEHLFLGLRSIVGIDETKLNQWQKDKINILLKEKKLFYK
                     NKRYFNPNFLISDELALYLSS"
     gene            1131..1547
                     /gene="tatB"
                     /locus_tag="ACJFD7_000869"
     CDS             1131..1547
                     /gene="tatB"
                     /locus_tag="ACJFD7_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008320 - protein transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase protein
                     TatB"
                     /protein_id="HGG0859698.1"
                     /translation="MSFGEIIVILVVAILVLGPDKLPEAIVQIAKILKAVKRNIDDAK
                     SSIEKEIRINDLKEEAKKYKDEFSSTNENIRKKLSFEEFDDLKRDILDKTKVDLTFDS
                     RDDKVKNNLSGQNLNTEEKPNLSKLETQDKNGKINV"
     gene            1540..2277
                     /gene="tatC"
                     /locus_tag="ACJFD7_000870"
     CDS             1540..2277
                     /gene="tatC"
                     /locus_tag="ACJFD7_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HGG0859699.1"
                     /translation="MFEELRPHLIELRKRLFISVACIVVMFIVCFALRSYILDILKAP
                     LIAVLPEVAKHVNVIEVQEALFTAMKVSFFAAFIFSLPVIFWQFWKFVAPGLYDNEKR
                     LVVPFVSFASIMFALGACFCYFVVVPLAFKFLINFGLNEDFNPVITIGTYVDFFTKVV
                     VAFGLAFEMPVIAFFFAKVGLIDDSFLKRHFRIAVLVIFVFSAFMTPPDVLSQFLMAG
                     PLCGLYGLSILIVQKVNPVPKDKESNE"
     gene            2270..3298
                     /gene="queA"
                     /locus_tag="ACJFD7_000871"
     CDS             2270..3298
                     /gene="queA"
                     /locus_tag="ACJFD7_000871"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HGG0859700.1"
                     /translation="MNKDLLLSSYDYTLANELIANYPTNPKEDARLLVFDRKNKEIFH
                     TTFKNLHDFLPNCAIFFNDTKVIKARIYGNKASGGKIELFLHQPFLNSHNPLFLAQIK
                     GRVKKDEILYFKEDLKARVVELLNDGLRKVHFFQNDKTLDTSNLYNLLDKIGHIPLPP
                     YIKREDEKSDLKDYQSIFAKNLGAVAAPTASLHFSETMLENLRKKHEIYHLTLHVGAG
                     TFKSVECENIQEHKMHSEFFNIPQQACEIIDSKQAILGVGTTVTRTIEYYTRTKTKNG
                     FCDLFLHPQNPPIRQNHLLTNFHLPKSTLIMLVSAFIGREQCLKLYELAIKEKYRFYS
                     YGDAMLIL"
     gene            3510..5171
                     /locus_tag="ACJFD7_000872"
     CDS             3510..5171
                     /locus_tag="ACJFD7_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002905709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HGG0859701.1"
                     /translation="MALKNGGGGLEFHNLALGGCDGLQKLYELTHPKNQELFKNAEAI
                     LIETNINEYDMFAKSGLCFQILARNFELLCKALANLNTKVIFLILPLEPSENTAKHIK
                     IIDNFNREKIKQYNFNCIDMQRYYNEKGLNPFFATTDCFHQLSSIMRITGEKIIANLH
                     IFKKHLQTHFKMPHFLVKSPKELFNQNLSCRELKNSLLNEQIYKLDEKNVLKFQNSYS
                     GYGILGIYICNFFEVKPYNIASFILKNTKQKIIKGIASNFYHLHTLEEFFIIDEESFL
                     YFNKTNESLSEGSVWLHKNVEILNNISHIGLAHFFLVKPDENFYEKNIDLQSLETKEN
                     IDITYDFTYILPPFELYKELIEEYCQRMDSVKQKPLQEQITHLHTKINTLDKQNETLQ
                     NTLNTHHFKKEKLELENLEQELISKKLSNEILAKKLGKKLDFFMPKITLIEANSAKAR
                     MHNHLAYKLGSCMIRNSKSLLGYIKMPFLLIALTIAHKEYPKIQLPKLEDYPDYKEAL
                     KEKQSLTYKLGLAFMQANKAWYKGGYIQFYFEVRRLKKEFKASPS"
     gene            complement(5158..6114)
                     /gene="lpxD"
                     /locus_tag="ACJFD7_000873"
     CDS             complement(5158..6114)
                     /gene="lpxD"
                     /locus_tag="ACJFD7_000873"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HGG0859702.1"
                     /translation="MKLSEIAEFLSLEYKGEDIEISALNSLLKANFTELTYCDGEKNT
                     KDIPHTGAAAILVSKEYENLVPKDTKALITQSPHLSFAFLSKLFAKPLISTAKEKVQN
                     IAKSARIMPNVYIGDNVNIGENVIIMAGAYIGDNVSIGDESIIHPNVVIYNDTKIGKK
                     CHLLANCVIGSDGFGYAHNKNGEHYKIYHNGNVVLEDFVEVGACTTIDRAVFDSTIIK
                     AGTKVDNLVQIGHNCNIGQNCIIVAQTGISGSSELGRNVIMGGQSATSGHLKIGDFST
                     IAARGGVSKNLEGGRVYGGFPIMLQKDWLKLQAKIAMKFKKD"
     gene            complement(6111..6575)
                     /gene="ilvN"
                     /locus_tag="ACJFD7_000874"
     CDS             complement(6111..6575)
                     /gene="ilvN"
                     /locus_tag="ACJFD7_000874"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990610 - acetolactate synthase regulator
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HGG0859703.1"
                     /translation="MRRVLSVIVLNEHGVLSRIVGLFSGRGYNIDSLTVAPLENKEFS
                     RINIVTSGNERTFEQIVKQLHKLIPTYKVIESEEFIDKEMALVKIPLNENLGGLDAVL
                     KAYNGTIANSNENFLFLMVADDANRIDNFLKTIKKYNPSDIVRSGSVLMEIK"
     gene            complement(6572..8272)
                     /gene="ilvI"
                     /locus_tag="ACJFD7_000875"
     CDS             complement(6572..8272)
                     /gene="ilvI"
                     /locus_tag="ACJFD7_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HGG0859704.1"
                     /translation="MKELSGSAMICEALKEENVKIVFGYPGGAALNIYDEIYNQKYFK
                     HILVRHEQAALHAADAYARMSGEVGVAIVTSGPGFTNTITGLATAYSDSIPLVLISGQ
                     VANSLIGTDAFQEIDAVGISRPCVKHNYLVTCIEEFPRILKEAFYIARSGRPGPVHID
                     VPKDVSATLGLWEYSKEISMKTYKPVYKGNSKQIKKFAELLKEAKRPLFYLGGGCISS
                     NASEQIRELIKFTKIPAVETLMALGTLRSDDVFNLKMAGMHGSYAANMALSECDLLVS
                     VGARFDDRITGKTSEFAKHATIVHVDIDPSSISKIINAHYPIVGDIKEVLKELLEELK
                     KENFNTTFKEWHETLKRYNELYPLSYEDSNEILKPQWVIEECAKMAPDARIITDVGQH
                     QMWVAQFYPFNYPRQLATSGGQGTMGYSLPAALGAKLAVGEEVVINFVGDGSVLMNIQ
                     ELMTAYEYGIKTINIILNNAFLGMVRQWQSMFYKEHFSQTDLSTQPDFIKIAQGFGCE
                     GYEISSKEEFIQAFSQALKSDKTSLLNVKIDRFEDVLPMVPAGGAIYNMILPKAKDRQ
                     "
     gene            complement(8290..8733)
                     /locus_tag="ACJFD7_000876"
     CDS             complement(8290..8733)
                     /locus_tag="ACJFD7_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HGG0859705.1"
                     /translation="MTLKEQILNDIKEAMKQKDDFKRDSLRTLNAAFKQIEVDERIEL
                     DNERIYKIIASEIKKRKDAIELYLKANREDLAQKEQNEISLFEIYLPKQLSDEELTLA
                     LKQLIEELGVSSLKEQGLVMKEAKIKLGASVDGKRLNLALKELLQ"
     gene            complement(8745..9764)
                     /gene="ribA"
                     /locus_tag="ACJFD7_000877"
     CDS             complement(8745..9764)
                     /gene="ribA"
                     /locus_tag="ACJFD7_000877"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3,4-dihydroxy-2-butanone
                     4-phosphate synthase/GTP cyclohydrolase II"
                     /protein_id="HGG0859706.1"
                     /translation="MKFVSVEQAIKDLQAGKMLVMVDAEDRENEGDLIFPAQFSTQEK
                     VNFMIKEARGVVCVALDEALAKKFELPLMVPKNTSNHETAFTITVDAKDATTGVSAYE
                     RNMTIQIFADDNAKASDFVRPGHINPLIAKKGGVLERTGHTEGTVDLCKLAGLKGACV
                     ICEIVKDNGDMARREDLEIFCQKHDLNMIAVSDLIEYRLKHESLIKLEEKSQSVLAGF
                     KAEKFIFSDHNQTQHIAFCFKDIKKCENVKFHISGSDFELLTSDKFSKLLEQIKFLSE
                     NGGVIVFMQGEKSSTTQYKNYGIGAQILRYFGIEEIKLLSQSCDKDYIGLEGFGLNLK
                     ACNFN"
     gene            9856..9930
                     /locus_tag="ACJFD7_000878"
     tRNA            9856..9930
                     /locus_tag="ACJFD7_000878"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9888..9890,aa:Gln,seq:ttg)
     gene            9964..10039
                     /locus_tag="ACJFD7_000879"
     tRNA            9964..10039
                     /locus_tag="ACJFD7_000879"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9997..9999,aa:Met,seq:cat)
     gene            complement(10061..10933)
                     /locus_tag="ACJFD7_000880"
     CDS             complement(10061..10933)
                     /locus_tag="ACJFD7_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HGG0859707.1"
                     /translation="MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDL
                     NERLTFMPIKKENGRYVLESFALGKLSFKDIQNFATLSGIAELYPKLDQGFIVDLLSH
                     RVNKVLMVKNEGFQKVDYELFKDLGVAILKHNVLNFFYKEKERQIKPYKLVNYKGIWY
                     LLGDENDKLKHFNLDKISKLRTKNENFIPNEKLEEQIQNDPNIWLGESKEVILKLDKN
                     AKEYFFRKEILSNYQIIDEDETSYTLSTQVSYEDEILHLVKQWIPYIKILAPIELKIR
                     LEDILKSYLNNLSK"
     gene            complement(10930..11996)
                     /locus_tag="ACJFD7_000881"
                     /pseudo
     CDS             complement(10930..11996)
                     /locus_tag="ACJFD7_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344000.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HP0729 family protein"
     gene            complement(12005..12310)
                     /locus_tag="ACJFD7_000882"
     CDS             complement(12005..12310)
                     /locus_tag="ACJFD7_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859708.1"
                     /translation="MFSKIFSSLSLANAFKGFLFKRISSPMQSARIISMVLDIKNAFN
                     DSKDQASSICKTLDLIVNFKKEHPQDFNELFEILKDLIQEYEQNPNEIKQNLKEILK"
     gene            complement(12317..12781)
                     /locus_tag="ACJFD7_000883"
     CDS             complement(12317..12781)
                     /locus_tag="ACJFD7_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004316478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859709.1"
                     /translation="MNFLSSLKDKAVNASEAIKDKTIKTAEVVKDIGMEVKCGIGWHA
                     GEYQNEKDKPKCFFSKICPDCGKYLTKNQHDFEAPEILNPDNCYGYRRCTLCSIQVFD
                     NFHNYYEIKKDAKCRMHEKCNLCGHERLGQTRHNWKYDENGQKICLDCKETV"
     gene            complement(12785..13255)
                     /locus_tag="ACJFD7_000884"
     CDS             complement(12785..13255)
                     /locus_tag="ACJFD7_000884"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859710.1"
                     /translation="MTTILKEVVIFFTSSFCIATRMNQALSLIIAQGFVKSDGKVIRL
                     SKAAKEQFQQIQKFTLSFIEDHEKHKDTINNIQVELDKKNQIDDEQYKLIEKHYQEFI
                     QYKNYNDKIVQEQECKINELKDILNKRKNVFTNSISILALIVSVASIVLYFIGR"
     gene            complement(13405..13566)
                     /locus_tag="ACJFD7_000885"
     CDS             complement(13405..13566)
                     /locus_tag="ACJFD7_000885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859711.1"
                     /translation="MLELITQKDQDFLQNIENLDEEYIQKFINKKISEIAIAIETAAE
                     NADKAKDRT"
     gene            complement(13678..14433)
                     /locus_tag="ACJFD7_000886"
     CDS             complement(13678..14433)
                     /locus_tag="ACJFD7_000886"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859712.1"
                     /translation="MKIFVYSAFGVVLKDFIEAVVIELKTTFREFGKENIKEIFKRFA
                     RRMEKVWEKIKAKWKDIFKGSLEAGIQAFFSNLLVFIINTIFTTLKKIVQIIRAGFTS
                     LYQAVKIIINPPKNIPKDEIYFEASKIFVSGMISAISMLGSEMIHKFLLSIPGFNVFL
                     SLPIPFTNETIGDALSLCISAAGGAVLSTIAIFYMDKWRSNSKIGNLQIQIVTQKNLI
                     VQYKIAKTWFALNNAYHIVKNETLATIQQIKKG"
     gene            complement(14505..15248)
                     /locus_tag="ACJFD7_000887"
     CDS             complement(14505..15248)
                     /locus_tag="ACJFD7_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859713.1"
                     /translation="MNNYIHLEELDLKANYADLEKELENLSKKECLRIEIDKGLENSL
                     KELEDLMEKLPEQQTQTLFEQCTKNAMDAVTGHFGLASTILNAKDGGNVTTLHNFEKG
                     IVATEEDLQKLTKYQQGYKRDSNYDKIKDNIRDNSPKIVRSEYTGEEMERGAGKNKAQ
                     LDHVISLKEIDRDPNMHLFLDDAIRAEIANYPDNLKWLDASANASKGDRDLMEWGKEI
                     DPKTGKTNFEKYGIDEKKLKKFTIQPNQT"
     gene            complement(15323..15528)
                     /locus_tag="ACJFD7_000888"
                     /pseudo
     CDS             complement(15323..15528)
                     /locus_tag="ACJFD7_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343995.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(15519..16119)
                     /locus_tag="ACJFD7_000889"
                     /pseudo
     CDS             complement(15519..16119)
                     /locus_tag="ACJFD7_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343994.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(16182..17558)
                     /gene="dnaB"
                     /locus_tag="ACJFD7_000890"
     CDS             complement(16182..17558)
                     /gene="dnaB"
                     /locus_tag="ACJFD7_000890"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HGG0859714.1"
                     /translation="MQQEYYDLDLERAILSSCIMSEEAYASIVGDISPKDFSLKAHQD
                     IFKAVIACSNNKEPISVSFLRKHKKIDEQILAEILATPSMIDLPAYVNELHEKSVKRQ
                     LLSFAHLLPTRINEDRAVSEIADEIGKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ
                     KTLENKGIIGLDTGFEGLNKMTKGFKGGELIIIAARPGMGKTTLCLNFIDKVLRQKKG
                     VALFSLEMPATQIMQRMLSSKTSIPLQKILTADLNDDEWERLGDACNDYSQKKLYIYD
                     SGYATIADVRAILRRLKSQDESIGLCVIDYIGLMMSNSNFNDRHLQVSEISRGLKLLA
                     RELDIPIIALSQLNRGLEQRANKRPLMSDLRESGAIEQDADAILFVYRDEVYREQEEK
                     ERENKAKAEGKAYQRLFIPNPMQENAEIIVGKNRNGPVGTIEVVFLKEKSCFVDKPIG
                     YETTEFTG"
BASE COUNT         5791 a         3076 c         2339 g         6387 t
ORIGIN      
        1 tttttatgca tttttatatc catattccat tttgtgaaag caaatgtaat tattgcgctt
       61 ttacaagttt gaaaaaaaat gattatgaaa aagcctattt taaggcttta aaagaagata
      121 ttgtttttca attaaaacaa tttaacattc aatcaaatca aattaaaacc ttattcatag
      181 gcggaggaac accaagttgt gttaatgcgt ataattatga agatattttt aaaattttat
      241 atcccttact agataaaaat gtagaaattt catgcgaagc taatcccaac tcagcaacat
      301 taaattggct taaaaatatg aaaaatctag gagttaatcg catttctttt ggagttcaaa
      361 gttttcatcc taaaaaactt cactttcttg gaagaattca caatcaagaa atgattatca
      421 aaacattaga aaacgcaaat aaagtaggtt ttaaaaatat caatttagat cttatttatg
      481 atacgaaatt agacaataaa aaaatgcttg aatttgaact cttacactta aaacaaatca
      541 aggatttaat cacacacctt agtgcttata atttaaccat agaatcaaac acagcctttg
      601 ctaaaaaaga acatttcaaa aaaaatgctc ctaatttaat gaaatttttc atcaaacaac
      661 ttctagagct tgactttttt caatatgaaa tcagtaattt ttcaaaaacc aaagcccaaa
      721 tttgcaaaca taatcttgct tattggcaag gaaaaaacta cctagcttgt ggattaagtg
      781 cagtaggatt ttatgaaaat aagcgttttt atacagcaaa aaatttaaaa aattacatag
      841 aaaatcctac ttttagatct atagagcaac taagttccaa agacttgaat ttagagcacc
      901 tatttttagg acttagaagt atagtaggga ttgatgaaac aaaactcaat caatggcaaa
      961 aagacaaaat aaatatatta ttaaaagaaa aaaaactttt ttacaaaaat aaaagatatt
     1021 ttaatcctaa ttttctcatt agcgatgaac ttgctttata tctctcatct taaatttaag
     1081 ttttttaagt aaaatattta ttaaaatatc aaatcaaaga gtaatgatta atgagttttg
     1141 gtgaaattat agttatttta gttgtagcga ttttagtctt aggacctgat aaacttccag
     1201 aagctatagt acaaatagca aaaattctaa aggctgtaaa acgcaacata gatgatgcaa
     1261 aatcaagcat agaaaaagaa atacgcatca atgacttaaa agaagaagct aagaaataca
     1321 aagatgaatt ttcaagcact aatgaaaata tacgcaaaaa actcagcttt gaagaatttg
     1381 atgaccttaa gagagatatt ttagataaaa caaaggtaga tttaaccttt gatagcagag
     1441 atgataaagt aaaaaataac cttagcggac aaaatttaaa tacagaagaa aaaccaaatc
     1501 ttagcaaatt agaaacacaa gataaaaacg gaaaaataaa tgtttgaaga attaagacct
     1561 catttaatag aacttagaaa acgccttttt ataagcgttg cttgcattgt agttatgttt
     1621 attgtatgtt ttgctctacg aagctatatc ttagatattc taaaagctcc acttatagct
     1681 gttttacccg aagtagccaa acatgtaaat gtaattgaag tacaagaagc cttatttacc
     1741 gcaatgaagg ttagtttttt tgcagccttt atcttttctc tacctgtaat tttttggcaa
     1801 ttttggaaat ttgtagctcc aggactttat gataatgaaa aacgccttgt ggtgcctttt
     1861 gttagctttg cgagcattat gtttgccttg ggggcttgtt tttgctattt tgttgtagtg
     1921 cctttggctt ttaaattttt gattaatttt ggtttaaatg aagattttaa tcctgtaatt
     1981 accataggaa cttatgtaga tttttttaca aaagttgttg tggcttttgg cttagctttt
     2041 gaaatgcctg taattgcctt tttctttgct aaagtcggac ttatagatga tagtttttta
     2101 aaacgccatt ttcgcatagc tgttttagtt atttttgttt tttcagcctt tatgactcca
     2161 cctgatgttt tatctcaatt tttaatggca ggaccacttt gcggacttta tggactttct
     2221 attttaattg ttcaaaaggt aaatcctgtc ccaaaagata aagaaagtaa tgaataaaga
     2281 cttacttctt tcaagctatg attacactct agctaatgaa ctcatagcca actatcctac
     2341 aaatccaaaa gaagatgcta ggcttttggt ttttgatcgc aaaaacaaag aaatttttca
     2401 cactactttt aaaaatttac acgacttttt acccaactgc gcgatttttt tcaatgatac
     2461 caaagttatt aaagcaagaa tttatggtaa taaagcaagc ggaggaaaaa tagaactttt
     2521 cttacatcaa ccttttttaa attctcacaa tccacttttt ctagctcaaa ttaaagggcg
     2581 cgttaaaaaa gatgaaatct tatattttaa agaggattta aaagcgcgcg ttgtagaact
     2641 tttaaatgat ggtcttcgaa aagttcattt ttttcaaaat gataaaactt tagacacctc
     2701 aaatctttac aacctgcttg acaagatagg acatataccc ttgcctcctt atattaaaag
     2761 ggaggatgaa aaaagtgatt tgaaagatta tcaaagtatc tttgcaaaaa atttaggcgc
     2821 agtggctgct ccgactgcaa gtttacattt tagtgagact atgcttgaaa atttaagaaa
     2881 aaaacacgaa atttatcatt taaccttgca tgtaggagct ggaaccttta aaagcgtgga
     2941 atgtgaaaat atacaagagc ataaaatgca tagcgaattt tttaatattc cgcagcaagc
     3001 atgtgaaatt atagattcta aacaagctat tttaggcgta ggaacaacgg taacaagaac
     3061 catagaatat tatacaagaa ctaaaacaaa aaatggtttt tgtgatcttt ttttacaccc
     3121 gcaaaatcca cctataagac aaaatcatct tttaaccaat tttcatttac caaaatctac
     3181 tcttatcatg ctagtttcag cttttatcgg tagagaacag tgtttaaaac tttatgaact
     3241 cgccataaaa gaaaaatatc gcttttactc ttatggcgat gcgatgctga ttttataaat
     3301 gtcagctccc cgccaaaaaa taccaccttt ttaactttaa ctctcttttt caactctagc
     3361 tttttagatt taaaaaccct tctaatttta ttttttttga tataatcact cttttatttt
     3421 atattttaag gatttaaata tgaaaaatat cattttgctt ggtggaagca attctctcat
     3481 tcacattggc ttacaaaaag gcttaaaaga tggcattgaa aaatgggggg gggggattag
     3541 aatttcataa tcttgcccta ggtggctgtg atggacttca aaaactttac gaactcactc
     3601 atcctaaaaa tcaagaactt ttcaaaaatg ccgaagctat tcttatagaa actaatatca
     3661 atgaatacga tatgttcgct aaaagtgggc tttgttttca aatcttggct agaaatttcg
     3721 agcttttatg taaggctctg gctaatttaa atacaaaagt aatttttctc atcctaccct
     3781 tagagcctag tgaaaacacg gctaaacaca taaaaatcat tgataatttt aatagagaaa
     3841 aaatcaagca atataatttt aattgcattg acatgcaaag atattataat gaaaaaggac
     3901 ttaatccctt ttttgctacc acagactgtt ttcatcaact ttcttctata atgagaatta
     3961 ctggcgaaaa aatcatagcc aatcttcata tcttcaaaaa acatctacaa acccatttta
     4021 aaatgcccca ttttcttgta aaatccccta aagaactttt taatcaaaat ttatcctgca
     4081 gggaacttaa aaattcttta ctaaacgaac aaatatacaa actggatgaa aaaaatgttt
     4141 taaaattcca aaattcttac tcaggatatg gtattttagg aatttatatt tgtaattttt
     4201 ttgaagttaa accctataat atcgcaagct ttattctaaa aaatacaaag caaaaaatca
     4261 tcaaaggtat agcttcaaac ttctatcatt tgcatacttt agaggaattt ttcattattg
     4321 atgaagaaag ttttttatat tttaataaaa ccaatgaatc acttagtgaa ggtagcgtat
     4381 ggctacacaa aaatgttgaa attttaaaca atatcagcca tataggtttg gctcattttt
     4441 tcttagtcaa gcctgatgag aatttttacg aaaaaaacat agacttgcaa agtttggaaa
     4501 ctaaagaaaa tattgatatt acttatgatt ttacctacat acttccacct tttgagcttt
     4561 ataaagaatt gattgaagag tattgtcaaa gaatggatag tgtcaaacaa aaacctttgc
     4621 aagagcaaat tacacatctt cataccaaga ttaacacact agataagcaa aacgaaactt
     4681 tacaaaatac tctcaatact catcatttca aaaaagaaaa actcgaactt gaaaatttag
     4741 aacaagagct tatttcaaaa aaattaagca atgaaatttt agctaaaaaa ttaggcaaaa
     4801 aacttgattt ttttatgcca aaaatcaccc ttatagaagc taattcagcc aaggccagga
     4861 tgcacaatca ccttgcctat aaacttggct cttgcatgat aagaaattca aaaagtcttt
     4921 taggctatat taaaatgcct tttctcctaa tagcccttac aatcgcccat aaagaatatc
     4981 ctaaaatcca acttcccaag cttgaagatt acccagatta taaagaagca ttaaaagaaa
     5041 aacaaagcct cacttataaa ttaggactag cttttatgca agcaaataaa gcttggtata
     5101 agggaggcta tatacaattt tattttgaag taagaagact aaaaaaagaa tttaaagcta
     5161 gtccttctta aacttcatag caatcttagc ttgaagtttt agccaatctt tttgaagcat
     5221 gataggaaaa cctccataaa cacgcccgcc ttctaaattt ttactcacac cgcctcttgc
     5281 agctatagtg ctaaaatcgc ctatttttaa atgtccactc gttgcacttt gaccacccat
     5341 aataacattg cgtcctaact cacttgaacc tgaaattcca gtttgcgcca caatgataca
     5401 attttgacct atattgcaat tatgtccgat ttgaactaga ttgtctacct tggtacctgc
     5461 tttgataata gtactatcaa aaactgctct atctatagtt gtacaagccc ccacttctac
     5521 aaaatcttct aaaaccacgt tgccattatg ataaatttta taatgttcgc cgtttttatt
     5581 gtgcgcataa ccaaaaccgt cacttcctat tacacaatta gcaagcagat gacatttttt
     5641 accgatttta gtatcattat aaatcactac attaggatga ataatactct catcaccaat
     5701 gctgacatta tcgcctatat aagctcctgc cataatgatt acattttcac cgatatttac
     5761 attatcacct atataaacat taggcatgat tcttgcgctt tttgcgatat tttgtacttt
     5821 ttctttagct gtgcttatca aaggtttagc aaaaagcttg cttaaaaaag caaaactcaa
     5881 atgtggactt tgagtaatca aagctttagt atctttaggt actaaatttt catattcttt
     5941 agatactaaa atagcagcag ctcctgtgtg aggtatatct ttggtatttt tctcaccatc
     6001 acaataagta agctctgtaa aatttgcttt caataaagaa tttaaagcac tgatttctat
     6061 atcctcgcct ttatattcca agcttaaaaa ttctgctatt tcacttaatt tcatttaatc
     6121 tccatcaaaa cagatccact gcgaactata tcactaggat tgtatttttt aattgttttt
     6181 aaaaaattat caatgcgatt tgcatcatca gcaaccatta aaaacaaaaa attctcattg
     6241 ctatttgcaa tagtaccatt ataagctttc aaaacggcat caagtccacc taaattttca
     6301 tttaaaggaa ttttcaccaa agccatttct ttgtcaataa attcttcact ttctatcact
     6361 ttataagtag gaatgagctt atgaagttgt ttaactatct gctcaaaagt tctttcattt
     6421 cctgaagtga ctatattaat acgagaaaat tctttatttt ccaaaggtgc tactgtaagc
     6481 gagtcaatat tataacctct tcctgaaaaa agtcctacta tacgagataa aaccccatgc
     6541 tcatttaaaa caattaccga taaaaccctt ctcattgtct atcctttgcc tttggtaaaa
     6601 tcatattata aatcgcacct cctgcaggca ccataggtaa aacatcttca aagcgatcaa
     6661 tttttacatt taaaagagag gttttatcac tttttaaagc ttggctaaaa gcttgaatga
     6721 attcttcttt gcttgaaatt tcataacctt cacaaccaaa accttgagca attttgataa
     6781 aatcaggctg agtgcttaaa tcagtttgtg aaaaatgctc tttataaaac atactttgcc
     6841 attgtcttac catacctaaa aaggcattat ttaaaataat atttatagtt tttataccat
     6901 actcataagc agtcataagc tcttggatat tcattaaaac cgatccatca cctacgaaat
     6961 taatcaccac ttcttcaccc acggcaagct ttgcacccaa agcagcaggt aaagaatatc
     7021 ccatagttcc ttgccctcca cttgttgcaa gttgtcttgg ataattaaaa ggataaaact
     7081 gtgccaccca catttgatgc tgacccacat cggtaataat ccttgcatct ggagccattt
     7141 tcgcacattc ttcaatcacc cattgcggtt ttaaaatctc attgctatct tcataagaaa
     7201 gcggataaag ttcattataa cgctttaaag tttcgtgcca ttctttaaaa gttgtgttga
     7261 aattttcctt tttaagctct tctaaaagct ctttaagaac ttctttaata tctcctacta
     7321 taggataatg cgcattgata atctttgaaa tagaactagg atcaatatca acatgaacta
     7381 tagtcgcatg tttagcaaat tcacttgttt ttcctgtaat cctatcatca aatctcgctc
     7441 ctacactcac aagcaaatca cactcactta aagccatatt agcagcatag cttccatgca
     7501 tacctgccat tttaagatta aaaacatcat cacttcttaa agttccaagc gccatcaaag
     7561 tttcaactgc tggaattttt gtaaatttta taagctctct gatttgctcg cttgcattag
     7621 aactgatgca acctccacct aagtaaaaca aaggtctttt tgcttctttt aaaagctctg
     7681 caaatttttt aatttgcttt gagttaccct tataaacggg cttataagtc ttcatggaaa
     7741 tttctttaga gtattcccaa agtcccaaag ttgcacttac gtcttttggc acatctatat
     7801 gcacaggccc aggtctacca cttcttgcta tataaaaagc ctcttttaaa atgcgtggaa
     7861 actcttctat acaagtaact aaataattat gctttacaca aggtcttgaa atgcctactg
     7921 catcaatttc ttgaaaagca tctgtaccaa taagagaatt tgccacctgc cctgaaatca
     7981 acaccaaagg gatagaatcg ctataagccg tagctagacc tgtaatagta tttgtaaaac
     8041 ctggtccgct tgtaactata gctacgccca cttctccgct cattcttgcg taagcatcag
     8101 cagcatgcaa agccgcttgt tcatgacgca ctaaaatatg tttaaaatac ttttgattgt
     8161 aaatttcatc ataaatatta agcgcagcgc ctccaggata accaaaaaca attttaacat
     8221 tttcttcttt taaagcctcg caaatcattg ccgaaccgct taactctttc ataataacac
     8281 tccaaaaaat tattgtaaaa gctctttaag tgctaaatta agtcttttgc catcaacact
     8341 cgcacctaat tttattttag cttctttcat taccaaacct tgttctttta gtgaacttac
     8401 gcccaattct tctataagtt gttttaaggc taaagttaac tcctcatcac ttagttgttt
     8461 aggcagataa atttcaaaaa gacttatttc attttgttct ttttgtgcta aatcttcacg
     8521 atttgcctta agataaagtt cgattgcgtc tttgcgtttt ttgatttcac ttgcaatgat
     8581 tttataaatt ctttcattat ccaactctat tctttcatcc acttctattt gcttaaaagc
     8641 tgcatttaga gttcttaaac tatctctttt aaaatcatct ttttgtttca ttgcctcttt
     8701 gatatcgttt aaaatttgtt cttttaaagt catttttttc ctttttagtt aaaattacaa
     8761 gctttaaggt ttaaaccaaa accttctaag cctatatagt ctttatcaca actttgagat
     8821 aaaagtttaa tttcttctat accaaaatat cttaaaatct gtgctcctat accatagttt
     8881 ttgtattgag tggtgctgga tttttctcct tgcatgaaaa ctataacgcc accattttca
     8941 ctaagaaatt tgatttgctc taaaagtttt gaaaatttat ctgaagttaa aagctcaaaa
     9001 tcactaccac tgatatgaaa tttaacattt tcacattttt tgatatcttt aaagcaaaaa
     9061 gctatgtgtt gggtttgatt atgatcacta aagataaatt tttctgcttt aaagcctgct
     9121 aaaacacttt gacttttttc ttcaagctta ataagacttt catgttttag gcgatattct
     9181 ataagatcgc ttacggctat catatttaaa tcatgttttt ggcaaaaaat ttctagatct
     9241 tctcttcttg ccatatctcc attatctttt acaatttcac aaatcacaca agcacctttt
     9301 aatcctgcta atttacaaag atcaaccgtg ccttctgtat gacctgtgcg ttctaaaacc
     9361 ccaccttttt ttgcgattaa aggattgata tgccctggcc ttacaaaatc actcgcctta
     9421 gcattatcat cggcaaaaat ttgtatagtc atatttcttt cataggcgct aactcccgtt
     9481 gtagcatctt ttgcatctac ggttatagta aaagcagttt cgtggtttga agtattttta
     9541 ggcaccatta aaggaagttc aaattttttt gctaaagctt catctaaggc tacacaaacc
     9601 acaccacgag cttcttttat catgaaattt actttttctt gagtactaaa ttgcgcagga
     9661 aagattaaat cgccttcatt ttctctatct tctgcatcta ccataacaag catttttcct
     9721 gcttgtaaat ccttaatcgc ttgttctacg ctaacaaatt tcatttttat ttccttaaaa
     9781 tttttaaaat tataacttaa attgcttgac aaataaatta aaattcatta taatcacact
     9841 tttaaaaata tttattgggg tatcgccaag cggtaaggca acaggttttg gtcctgtcat
     9901 tcaggggttc gaatcccttt accccatcca cttcttattt tatatttcaa agatattata
     9961 tgccgcgaag tagagcagtg gttagctcgt cgggctcata acccgaaggt cgggagttca
    10021 aatctcccct tcgcaaccag ttaaggattt aaaataaatt ttatttagat agattgttta
    10081 aataactttt taaaatatct tctagccgta ttttcagttc tataggagct agaattttta
    10141 tataaggaat ccactgttta accaaatgta aaatttcatc ttcataggaa acttgagtgc
    10201 ttaaagtata gcttgtttca tcttcatcaa tgatttgata attgcttagt atttcttttc
    10261 taaaaaaata ttccttagca tttttatcaa gttttaaaat cacttctttg ctttctccaa
    10321 gccagatatt aggatcattt tggatttgtt cctcaagttt ttcattggga ataaaatttt
    10381 catttttagt gcgaagtttt gaaattttat ctaaattaaa atgttttaat ttatcgtttt
    10441 catcccctaa aagataccaa attcccttgt aatttacgag tttgtaaggt ttgatttggc
    10501 gttctttttc cttatagaaa aaatttaaca cattgtgttt gagtatagcc acaccaagat
    10561 ctttaaaaag ctcataatcc accttttgaa aaccttcatt ttttaccatc aaaactttat
    10621 ttaccctatg gcttaaaaga tcaactataa agccttgatc gagttttgga taaagctcag
    10681 caatgccact taaggtggcg aaattttgta tatctttaaa gcttaatttt cccaaagcaa
    10741 agctttctaa aacatatctt ccattttctt ttttaatagg cataaaagta agtctttcgt
    10801 taagatccct ttgtatggtt cttgtatcga cattaaactc ttgtgcaagc tcttgggcgc
    10861 ttagactttc cccattgtta aattttgata aaatctgcac caagcgtatg cttaatttgt
    10921 cgtattcttt catgaaattt ccttgtgggt taaaattctt tttaacaagc ttacaccttc
    10981 tatgcctaaa atttcatttc taagtttttt gacttcattt aaacttgggg cttttgcatg
    11041 aacggcttca ttacggattt cttgaatgag agtaagactt tttgaaaaag gataattgat
    11101 aaattgagtt aaactttttc ctaaatgata ttggatattt tcatgtctga gtagaaattt
    11161 aatacttcca agattaggct tttgggtaaa aaaatcttta agtataaaag atttgccttg
    11221 gacattataa gctaaatcat aaaggctagg atctttcata caagctttta aaagaacttt
    11281 tttggcaaaa gcgtaaattt catattctaa ggttttggag tatttgacta caatgcttgt
    11341 aaaatcattt aaaagatcgt tttcgctttg taaaagctcc aattctgcac gaatgatatt
    11401 gcttatgcta tcagggtgca agagataaaa aatccttttg ccaaaaacaa agcgtatgaa
    11461 attttcttgc atggctaggt attctttgct tttatacacg cttagataat gcttttcatc
    11521 tcctaaaaat aagaacactc ttcttttaat ctcacaggca aaggataggt gtaattattg
    11581 ccataaatgg cataggtgtg atcgtttggg gtgatgaaat tggctaaaaa tttatctctt
    11641 aaaagactaa aatcttccct gactaattct cttaaatcac tgatgataaa aaagtcttcc
    11701 acttctaaat ttttttcttt ataataacta ggaatcaaac tttcatcgac atttttagaa
    11761 atttttacca ccttagcgac aaataaatta gcataatcgc ttaaaaaaag ttgcaagaaa
    11821 ttttcttcat ttgtactttg gtaaatttct tctaagaaat tttgcttttc ttgatcgttg
    11881 agttttgatt tgattttgcc aaaggcaact tgggattttt cttgtaaaat gcttaaatgt
    11941 tgcttgatga catcttcttg ataataggga ttataaagga ttaaaaggtg gttcatgttt
    12001 tgccttattt taggatttct ttgagatttt gcttgatttc attaggattt tgctcgtatt
    12061 cttgtatgag atcttttaaa atttcaaaca actcgttaaa atcctgcgga tgttcttttt
    12121 taaaatttac tatcaaatcc aaagttttgc aaatactact tgcttgatct ttgctgtcat
    12181 taaaagcatt ttttatatcc aaaaccatac taataatacg agcactttgc atagggcttg
    12241 aaatgcgttt aaataaaaat cctttaaacg catttgcaag gctaagagat gagaaaatct
    12301 tagaaaacat ctgtctttat actgtttctt tgcaatctag acaaattttt tgcccgtttt
    12361 cgtcatattt ccaattgtgt cttgtttgtc ccaatctttc atgtccgcat aaattacatt
    12421 tttcgtgcat tctgcatttt gcatcttttt tgatttcata ataattatga aaattatcaa
    12481 acacttgaat agaacaaaga gtacatcgtc tatatccata acaattatca ggatttaata
    12541 tttcaggagc ttcaaaatca tgttgatttt ttgtaagata ttttccgcaa tcagggcaaa
    12601 ttttggaaaa aaaacatttt ggtttatctt tttcattttg atattcaccc gcgtgccaac
    12661 caatcccaca ttttacttcc attccaatat ctttaacaac ttcagcagtc ttaatagttt
    12721 tgtctttaat tgcttctgaa gcatttaccg ccttatcttt taaagaactt aaaaaattca
    12781 taaattaacg ccctataaaa tataatacaa tcgacgcaac agaaactatc aaagctaaaa
    12841 ttgaaatgct atttgtaaaa acattttttc ttttatttaa aatatctttc agttcattga
    12901 ttttacattc ttgctcttga acaattttgt cattataatt tttatattgt ataaattctt
    12961 gataatgttt ttctatgagt ttatattgct catcatcaat ttgatttttt ttatctaatt
    13021 ctacttggat attatttatc gtatctttgt gtttttcatg atcttctata aaactcagtg
    13081 tgaacttttg tatttgttga aattgttctt tagcggcttt agataaacga attaccttgc
    13141 catcgctctt tacaaaacct tgcgcaataa taagagataa agcttgattc atacgcgtag
    13201 caatacaaaa actggaagta aaaaatatta caacttcttt tagaattgtt gtcatttgat
    13261 tcattgattc attctgtaac tctgctactt caaggatcat attggattta atttcttttt
    13321 ttcttctgat gtttctccaa gccaacgtcc aaaaattggt atataagttt gccaatcact
    13381 atctgtatta agatttttgg ctttttatgt tctatctttt gctttatcag cattctctgc
    13441 tgctgtttca atagctatag ctatttcact gattttttta ttaataaatt tttgaatata
    13501 ttcttcatca aggttttcaa tattttgcaa aaaatcttga tctttttgtg tgataagttc
    13561 taacatcagt tctccttagt ttgattaagt tttttgtata attttttagt gatattacaa
    13621 ttttcaaatt cttcaattgc tgtttctact tcttgagaac tttgctctct catttggtta
    13681 tccttttttg atttgttgta tagttgctaa agtttcgttt tttacaatat gataagcatt
    13741 attcaatgca aaccaagttt tggcaatttt gtattgtact atcaaatttt tttgagttac
    13801 aatttgtatt tgtaaattgc caattttgga attgcttctc cacttatcca tataaaaaat
    13861 agctatagtg ctcaatacag caccaccagc cgctgaaata cataaagaaa gggcatcccc
    13921 tattgtttca ttggtaaaag ggataggtag tgacaaaaat acattaaatc caggtattga
    13981 cagcaggaac ttgtggatca tttcacttcc taacattgaa attgcagaaa tcatcccgct
    14041 aacaaaaatt ttcgatgctt caaagtaaat ttcatctttt ggtatatttt taggtggatt
    14101 aataatgatt tttacagctt gatatagaga agtaaagcct gcacgtatga tttgcactat
    14161 tttttttaaa gttgtaaaaa tagtgttaat aataaaaacc aacaaattag aaaaaaatgc
    14221 ttgaattcct gcttctaaag aacctttgaa tatatccttc cattttgcct ttatcttttc
    14281 ccaaactttt tccattctgc gtgcaaatcg tttaaaaatt tctttaatat tttcttttcc
    14341 aaactctcta aaggtggttt ttaattcaat aacaacagct tcaataaaat cttttaagac
    14401 aactccaaag gcagaataaa caaagatttt cattgaatct ttagcacctg tacttaaaac
    14461 ttcattagaa tatttgacaa ttttttcttt tataactttc ttttttaggt ttgatttggc
    14521 tgtattgtaa attttttcag ctttttttca tcgattccat atttttcaaa attggttttt
    14581 cctgtttttg gatcaatttc tttaccccac tccataagat ctctatcacc tttagaagca
    14641 ttagcacttg catcaagcca cttaagattg tcagggtaat ttgctatttc tgccctaatt
    14701 gcatcatcca aaaataaatg catattagga tctctatcaa tttcctttaa agaaataaca
    14761 tgatctagtt gcgctttatt ctttccagca cccctttcca tttcttcacc tgtgtattca
    14821 ctacgtacaa tttttggaga attatctctt atattatctt ttattttatc atagtttgaa
    14881 tctcgtttat agccttgttg atactttgta agcttttgta aatcttcttc tgttgctaca
    14941 ataccttttt caaagttatg tagtgttgtt acattcccac catcttttgc atttaagatc
    15001 gttgaagcga gtccaaaatg ccctgtcaca gcatccatag catttttagt gcattgttca
    15061 aaaagtgttt gggtttgctg ttcgggtaat ttttccatta aatcttcaag ttctttaagt
    15121 gaattttcca aacctttatc aatttctatt cttagacatt cttttttaga taaattttcc
    15181 aactcttttt ctaaatccgc ataattggct tttaaatcca attcttctaa atgtatataa
    15241 ttattcatat tttaataatt ccttgttttt aatttttgta ttttatcaaa tccccccccc
    15301 agtcaaggga gaagtgaaat ttttaagttt tacgccatag cactagcgct aaaattgtga
    15361 ttaaatatat agcacaaaat attatattat aaggataagg ttgcatagaa aaaaaataag
    15421 tatcgctatg ccaacaaaaa ccataaacgc tataaaatac aaactacaca tcaacactat
    15481 ggcaacaaag ccagctataa ggcttaaaat tccaagcatt attcccattg tttattccac
    15541 ataggagaac tccacataga aggaaaaata tactgaggaa aagtttgaaa ttttgtttgc
    15601 aaataaaatc tctgtgtttt tctctccatg ctttcgctta tcatttttac aaccgctaag
    15661 tcattttttt cgctttgtgt ttccaaaaaa gcacttaagc attcaaattt ttgcatagtc
    15721 gattactttt atcatttgat ctttataaga cgacaaaaga aattctgttt tatgattatt
    15781 tttagaggta aaattttgct caaattctaa aaattcctta gaattaaaat attttgaaaa
    15841 gccgctataa cactccatac attcgcaaag aaattcttga atttgatttt tcttttgttc
    15901 gatttcaagc tctcttttga gtttgtattc ttcggtattg atcatatctt tacagcttgg
    15961 aacaatagca tgtgtatcaa attttctttc tggcttggat aatttttcgt ataatttttt
    16021 tatgccatat cctgtagctg taagagctat actaccaaat gcgatttgtt ttaacatttt
    16081 ctctccttgt tttaaaataa caaagaaagt ataaaacacc cttgcgacag gttgtgtcgt
    16141 aaaaaataac tttaaaatat taaaaactta ttttattaaa gctagcctgt aaattcagta
    16201 gtttcatagc ctataggttt atctacaaaa caagattttt cttttaaaaa tacaacttct
    16261 atagttccaa caggtccatt tctatttttt ccaacaataa tttcagcatt ttcttgcata
    16321 ggatttggta taaaaagcct ttgataagct ttgccttcag ctttagcttt attctctctt
    16381 tctttttctt cttgttctct ataaacctca tcgcgatata caaacaaaat agcatccgca
    16441 tcttgctcta tagctccact ttctcgcaaa tcactcatca aaggacgctt atttgccctt
    16501 tgctctaagc cacgattaag ttgtgaaagt gcaataatag gtatatcaag ctccctagcc
    16561 aaaagcttaa gtcctcttga aatttcacta acttgcaaat gtctatcatt aaaatttgaa
    16621 ttactcatca taagccctat atagtcaatc acacaaagtc ctatactttc atcttgagat
    16681 tttaaacgcc ttaaaatagc ccttacatca gcaatagttg cataaccact atcgtaaata
    16741 tataatttct tttgactata atcattgcaa gcatctccta aacgctccca ttcatcatcg
    16801 tttaaatctg cagttaaaat tttttgcaaa ggaatagaag ttttagaaga tagcattctt
    16861 tgcatgattt gagttgcagg catttcaaga gaaaataaag ccacgccttt tttttgtctt
    16921 aaaaccttat caatgaaatt taaacaaaga gttgtctttc ccatacctgg acgcgcggcg
    16981 attattataa gttcaccccc tttaaaacct tttgtcattt tatttagacc ttcaaaacct
    17041 gtatcaagcc ctataatacc tttattttct aaagtttttt gctttttaaa ttcttcaaaa
    17101 agttctgata ttaccatatc aacatcttta atatctctag aattcacacg atttgtaatg
    17161 ctaaaaattt ctttaccaat ttcatctgcg atttcactta cagcacgatc ttcattgata
    17221 cgagttggca aaagatgtgc aaaactcaag agttgtcttt ttacggactt ttcgtgaagt
    17281 tcatttacat aagcaggcaa atctatcata gaaggagtgg caagaatttc tgctaaaatt
    17341 tgctcatcta tttttttatg ttttcttaaa aaacttacag aaatgggctc tttgttatta
    17401 ctacaagcta taaccgcttt aaaaatatct tggtgagctt taagactaaa atcttttggg
    17461 ctaatatcac ctactatact agcataagct tcttcactca tgatacaact gcttaaaata
    17521 gctcgttcta aatccaagtc ataatactct tgctgcacta aatttcctta taagtataaa
    17581 ttaattctaa aaa
//
LOCUS       DBBXPZ010000033        16701 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.035, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000033 DBBXPZ010000000
VERSION     DBBXPZ010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16701)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16701)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16701
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.035"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            29..676
                     /locus_tag="ACJFD7_000891"
     CDS             29..676
                     /locus_tag="ACJFD7_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HGG0859715.1"
                     /translation="MKKGIFLLVFLSVFFSACSTKNDEGLYNLSASEWYKQIIKDLQD
                     KDLEKADDHYNGMASEHVADPLLETTLIILAQAHMDEEEYKLAEFYLDEYNKKFGNSR
                     NADYIRYLKIKAKFDAFAVPNRNQALMLESQKEIDTFLKDYPYTEYEPLVQTMLTKFN
                     LAVFYLNSTIENLYQRIGHDESAQIYKQRLQESEFYQQSIIKPELPWYRSIFERF"
     gene            693..3068
                     /gene="lon"
                     /locus_tag="ACJFD7_000892"
     CDS             693..3068
                     /gene="lon"
                     /locus_tag="ACJFD7_000892"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HGG0859716.1"
                     /translation="MQIEEIQNYPANLPVLVEDELFLYPFMITPIFINDLSNMKALDL
                     AIKNDSMLFVAPSKLENGRNFDEIYNCGVIGTIMRKVPLPDGRVKILFQGYAKGKIIE
                     QISNKPLEAKIELIKEDFLEGTKKEALLEVLKEKVKNLANISHYFSPDLLRTIEEGFD
                     ASRICDLILNTVRIKKQVAYEFFVLTDLEQKLVKLIDLIAQEIEANKIQKEIKNKVHS
                     RIDKVNKEYFLKEQLRQIQKELGSDTQKEDEVREYQKRLELKKKFMHEDAYKEIKKQI
                     EKFERIHQDNSEASMIQTYIETALDVPFEKISKKKLDIKEVSKQLNHDHYALNKPKER
                     IEEYFAVRELLEKRKIAEKDGAKVILCLYGPPGVGKTSLANSVSKALKRELIRIALGG
                     LEDVNELRGHRRTYIGAMPGRITQGLIEAKQINPVIVLDEIDKLNRSFRGDPSAVLLE
                     ILDPEQNSKFRDYYLNFNIDLSKVIFIATANDISNIPAPLRDRMEFIELSSYTPSEKF
                     HIMKKYLIPDELKKHGLKSNELFIDDETIELIISDYTRESGVRNLRRKVAELCRKSAK
                     KLLLENIKKVIINTKNLNEFLDKKVFEIEKNNGENQVGQVNGLAWTSVGGDVLKVEAV
                     KIKGKGELTLTGSLGDVMKESARIAFSMIKVLIDEGKIKIPKKIIIDPKVNVYDSYNI
                     HIHVPDGATPKDGPSAGITISTAIASIFSDKKVKADVAMTGEIDLKGKVLPIGGLKEK
                     LIAAYKADIKTALIPRKNYERDLKDIPSEVRDNMEIIAVDTFSDVLEYTLV"
     gene            complement(3128..3388)
                     /gene="rpsR"
                     /locus_tag="ACJFD7_000893"
     CDS             complement(3128..3388)
                     /gene="rpsR"
                     /locus_tag="ACJFD7_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HGG0859717.1"
                     /translation="MAEKRKYSRKYCKYTEAKVEFIDYKDTAMLKHALSERFKIMPRR
                     LTGTSKKYQEMVEVAIKRARHVALIPYIVDRKEVINNPFEGL"
     gene            complement(3399..3947)
                     /locus_tag="ACJFD7_000894"
     CDS             complement(3399..3947)
                     /locus_tag="ACJFD7_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HGG0859718.1"
                     /translation="MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKR
                     EETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFEQWSDQNGQNRSKHSIQVENME
                     MLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
                     HEEKLKEIDIDAYDSDDTNLPF"
     gene            complement(3956..4333)
                     /gene="rpsF"
                     /locus_tag="ACJFD7_000895"
     CDS             complement(3956..4333)
                     /gene="rpsF"
                     /locus_tag="ACJFD7_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HGG0859719.1"
                     /translation="MKHYEVLFILKPTLTEEEVNAKLEFVKEVLTKNSAEIETVVPMG
                     TRKLAYKIKKYERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKKEIAAW
                     EKLSHGIKQSKKEIKPLDAPEIQ"
     gene            complement(4420..5286)
                     /locus_tag="ACJFD7_000896"
     CDS             complement(4420..5286)
                     /locus_tag="ACJFD7_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
                     /protein_id="HGG0859720.1"
                     /translation="MNKKFSYPIPNFTDRRKSIIFWRYLRFQARKILYFPQVRLLEKT
                     LNKEKNKHLKDFFSQRPYACYNATRRFCDKSFKANERVKTLIYDVDKGLACFKFLPEE
                     QIIFSFDEDFELFLGYNYNVCEEGFWAFSLKFKKYTILQCNFCFTLENNLLLSCIQGH
                     KYKDFNILEINKILTKKCHGLRPVALLIECSKMLCEILKLQTTLGVHEKNQIRSQRGK
                     EKGYFVDYQKIWLENGGELIKINKHKYYKLHHSQKNLEEIPSQKRSMYKKRFAMLEEI
                     KTNLDKTLSIQD"
     gene            complement(5279..6385)
                     /gene="rseP"
                     /locus_tag="ACJFD7_000897"
     CDS             complement(5279..6385)
                     /gene="rseP"
                     /locus_tag="ACJFD7_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HGG0859721.1"
                     /translation="MRSLLFLIVILILGIKFYSIEFLATVLVISFLIFFHELGHFLAA
                     RSLGVKVEVFSIGFGKSLIEREFKGTNYRLSTLPLGGYVKLKGQDDMRPGFENLDKDS
                     YSILSPLKKIYILFAGPFFNLILAFFLYIIIGNLGLNKLAPQIGNIAPNSAAQEIGLQ
                     KNDTILEINGIRIQTFDEISKHLSLDPLKILINREGKNLEFILTPKIGQGYNDFGQIV
                     EKPQLGVSPNGTSTLVKHQGLESFKYAAQESFQASTLIIKGIVKLISGEVEAKNLGGI
                     ITMTEITSKAAQNSFTLLLFITALISINLGILNLLPIPMLDGGHILFNLYEMIFRRKV
                     PQRTFEYLSYTGMAILLSLMLFATYNDISRIIGE"
     gene            complement(6382..6918)
                     /gene="pgsA"
                     /locus_tag="ACJFD7_000898"
     CDS             complement(6382..6918)
                     /gene="pgsA"
                     /locus_tag="ACJFD7_000898"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008444 -
                     CDP-diacylglycerol-glycerol-3-phosphate
                     3-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HGG0859722.1"
                     /translation="MNLPNILAIFRMVLAPLLFFLLIHHFENIHQSWINYFAALTFSL
                     AALSDFFDGYIARTWKQTTKLGGILDPLADKMLVLAAFLGLLLTGKANEWVIYIILVR
                     EFFITGFRVVMISENLNVNASFAGKLKTAFQMTAIGFLIMEWIGGEILLYIALILTLY
                     SGFEYIYTYIKAQKKGEK"
     gene            complement(7044..7649)
                     /locus_tag="ACJFD7_000899"
     CDS             complement(7044..7649)
                     /locus_tag="ACJFD7_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HGG0859723.1"
                     /translation="MKKELEIFSTRYSCRNFKNEKLKKEDLNSILEITRLSPSSLGLE
                     PWKFIVMQDEKRKEELSKICNQQKHVKDCAALIIIISRLDFLDYFEEKLRKRDMSETE
                     IQKRLDAYMPFLKSLNQEQKISYAREQAHIALASILYSANALNIASCTIGGFDKEKLD
                     SYLSLDIQKERSSLVVALGYCNDEKNPQKNRFSFDEVVKFI"
     gene            complement(7649..8198)
                     /locus_tag="ACJFD7_000900"
                     /pseudo
     CDS             complement(7649..8198)
                     /locus_tag="ACJFD7_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805019.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
     gene            complement(8262..8687)
                     /locus_tag="ACJFD7_000901"
     CDS             complement(8262..8687)
                     /locus_tag="ACJFD7_000901"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HGG0859724.1"
                     /translation="MKEIKLKEDLEKIYPLIKQLRNNLSLKDFLDKIQLATQTQHYKL
                     FAYENEGSYKAACGVMPFNVLYHNHCLYICDFVVDEALRGKGIGQAFLKKIQIWAKDQ
                     GYEELELSSSFFRTQAHEFYIQKMGFEKSGFVFKKNIKL"
     gene            complement(8699..9787)
                     /locus_tag="ACJFD7_000902"
     CDS             complement(8699..9787)
                     /locus_tag="ACJFD7_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HGG0859725.1"
                     /translation="MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQSKTDK
                     DLPFLLENLLNQYDFITLFTSPLHYATVAKILATLNDDNLILKDDTLVPDKAEFSKNS
                     FVCNFSNSKINVVKINPSEKLPNLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEI
                     SIKSTKLLDNLVLIKATCANFGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKL
                     KISFAESCTGGLCASTLTKISGVSEIFEGSIVSYSNRIKHEWLGISESVLENNGEYSE
                     RCVYFMLKGIFKTANPDFALAVSGVVGEKDEGKIKSGTIYIGAMFRDGTFIQETLYLD
                     GDREFMQEQAVLATFCLLLKLKPEIFEI"
     gene            9886..12639
                     /gene="ileS"
                     /locus_tag="ACJFD7_000903"
     CDS             9886..12639
                     /gene="ileS"
                     /locus_tag="ACJFD7_000903"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HGG0859726.1"
                     /translation="MDYKETLLLPSTTFAMRANLAELEPQRFKKWFEQNYAYEKMKEN
                     RKNAKKSFTLHDGPPYANGHIHIGHALNKILKETIIKTHYFKGESVRFTPGWDCHGLP
                     IEQQVEVKLGEKKKSLSKKEIREFCRQHASEFVDIQREEFKNLGIIADWDKPYLTMKF
                     EFEAAIYRTLCEIAKKGLLCERSKPVFWSWAAKSALAEAEVEYQDKEDYSIFVAFDLD
                     VKACEKLGVSKASAVIWTTTPWTLVANQAIALNPNENYVITKEGLIFASALLKSMVEK
                     GLTSGEIQKELNAKEFEKLEAINPLNGRKSVLIMGEHVLMDGGSGLVHTAPGHGEDDY
                     YACLKYGIEVLMPVDDSGCYDETLRAKGLLPSHLLEEFIGLHIFKANEKILELLGEKL
                     LHSSKFIHSYPFCWRTHKPVIYRATKQWFILMDEPKLQGKTLRECAKEQLLKTTFYPQ
                     SGVKRIGSMVENRPDWCISRQRDWGTPIAFFRDKNTKEVIFDDELFDFVAAIFEKHGA
                     DAWWEFEIKDLIPTNSKYKAENLEKVYDILDVWFDSGSTFNAVLNSGLYDAGEKRASM
                     YLEGSDQHRGWFQSSLLVGTAINESAPYESILTHGFTTDEKGQKMSKSKGNVIAPEYV
                     AKTYGVEILRLWILLSDYSSDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLKDLEV
                     KEFSFIDKWILSRATKVFKASKEAFFAYEFAKGFSLLLNFLSADLSGIYLDISKDRLY
                     CDSENAQRRKSAQVAMALIAKELLNLLAPNLSYSVDEALEHANVLIKGDAKDVFDLSL
                     TQDFDYDFGIDDTFLMSAREKFFEQIDILKKDKIIKSTLELNLNISFNKFPNEELADW
                     FMVSQISNENEEILAEFEVENEKFKITKASLCKCPRCWKLQSKDEETPCLRCEEVLKG
                     IQC"
     gene            12633..12743
                     /locus_tag="ACJFD7_000904"
     CDS             12633..12743
                     /locus_tag="ACJFD7_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859727.1"
                     /translation="MLENPIPNSIIITTIAVVLAFSALAVFLIKKTKENK"
     gene            12740..14101
                     /gene="gatA"
                     /locus_tag="ACJFD7_000905"
     CDS             12740..14101
                     /gene="gatA"
                     /locus_tag="ACJFD7_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HGG0859728.1"
                     /translation="MITLKEALKYSKEELENLKKELNEKAKKEKKIGAYIEQFLDKDL
                     SVSGEGVPVAIKDNISVKGWELTSASKILQGYIAPYDASAIVNLKANGFSPFGRCNMD
                     EFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPA
                     AFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSA
                     NIEFIKTAPNLNANKKLKIAVIENYVNDADSEVKNALLKTIDMLKANGHEIVYKNLLD
                     SKFDIAAYYIIATAEASANLSRYDGVRYGKRSENIQNLKEMYVNTRSEGFGEEVKRRI
                     LLGTFVLSSGYYDAYYIKAQKARAFIKAKYEEILQDCDLIFMPVTPTTAFKFDTQKSP
                     MQTYLEDVYTISVNLAGLGGISVPVAKDKEGLNISAQLICKAYDEQTLLDGALSLEQM
                     IKH"
     gene            14111..15568
                     /gene="guaB"
                     /locus_tag="ACJFD7_000906"
     CDS             14111..15568
                     /gene="guaB"
                     /locus_tag="ACJFD7_000906"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HGG0859729.1"
                     /translation="MKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLI
                     SAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSESGVIIDPIFVSPK
                     ASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDLRFESNFSNLVENVMTKMPLITA
                     PKGCTLDDAEKIFSTNKVEKLPIVDEQGRLEGLITIKDLKKRKEYPDANKDNFGRLRV
                     GAAIGVGQMDRVNALVEAGVDVVVLDSAHGHSKGIIDTVKAIKAKYPNLDLIAGNIAT
                     AAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIAD
                     GGIKYSGDIAKALAAGASSVMIGSLLAGTDESPGDLFTYQGRQYKSYRGMGSLGAMQK
                     GSSDRYFQQGTAQDKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQ
                     KRAEFVEITTAGLKESHVHDVTITHEAPNYKVNHQ"
     gene            15565..15738
                     /gene="xseB"
                     /locus_tag="ACJFD7_000907"
     CDS             15565..15738
                     /gene="xseB"
                     /locus_tag="ACJFD7_000907"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HGG0859730.1"
                     /translation="MSFEENLKHANESLEKLNNQELALDESVKIYKEGLESIKKARLE
                     LEKAKLEVEQIDE"
     gene            15731..16507
                     /locus_tag="ACJFD7_000908"
     CDS             15731..16507
                     /locus_tag="ACJFD7_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HGG0859731.1"
                     /translation="MSKIAALQFPTLALSESRLDYYLKASKDNGANLVVLGEYVINSF
                     FTELLHMPKNMIKEQSEAKKESLIKLAKKYELEIIAPYVSVEAKSYKKLCLKVTPNGV
                     KSYEQQILMPYEHWNEEKFFSNKTPSELKIFTFNYEKLKCALLFGFETHFDIFWQQIM
                     AKKIDLVIVPSACTFESKQRWEELLKTRAFLNSTSILRVNRIGKTKDEWNFYGDTLFI
                     NAFGEIESKLGSEEEMLIIEPKKSDEARKLWGFDKILKNF"
     gene            16519..>16701
                     /locus_tag="ACJFD7_000909"
     CDS             16519..>16701
                     /locus_tag="ACJFD7_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859732.1"
                     /translation="MRKILLQIFIFSVLFIVTFAINRILMQNSFIPTGLISDKNEIFL
                     MYLLGVFHDIRFLSAAF"
BASE COUNT         5887 a         2274 c         2908 g         5632 t
ORIGIN      
        1 tttttgagaa tataaatcaa ggtgaagtat gaaaaaaggt atttttttat tggttttttt
       61 aagtgttttt tttagtgcgt gtagtacgaa aaatgatgaa ggtttataca atcttagtgc
      121 tagtgagtgg tataagcaaa ttattaaaga tttgcaggac aaggatttgg aaaaagctga
      181 tgatcattat aatggtatgg caagtgagca tgttgccgat cctttattag aaactacttt
      241 aattatttta gcacaagctc atatggatga agaggaatat aagttagctg aattttattt
      301 agatgaatat aataaaaaat ttggaaattc acgcaatgct gattatattc gttatcttaa
      361 aattaaggca aaatttgatg catttgcagt gccaaatcgt aatcaggctt taatgcttga
      421 aagccaaaaa gaaatagata cttttttgaa agattatcct tatacagaat atgaaccttt
      481 ggttcaaaca atgcttacaa aatttaattt agcggttttt tatcttaata gtactataga
      541 aaatctatac cagcgcatag ggcatgatga aagtgcacaa atttataaac aaagacttca
      601 agaaagtgaa ttttatcagc aaagtattat caaacctgag cttccttggt atagaagtat
      661 atttgaaaga ttttaataaa caaggaaaat aaatgcagat tgaagagata caaaattatc
      721 cagcaaattt accagtattg gttgaagatg aattattttt atatcctttt atgataactc
      781 ctatttttat taacgattta tccaatatga aagctttaga tctcgcgatt aaaaatgata
      841 gcatgctttt tgttgcacct tcaaagttgg aaaatggaag aaattttgat gaaatttata
      901 attgcggagt gattgggact atcatgcgaa aagttccttt gcctgatgga agagtgaaaa
      961 tactttttca aggatatgcc aagggtaaaa ttatagagca aatttctaat aaacctttag
     1021 aagccaagat agaacttata aaagaagact ttttagaagg aactaaaaaa gaagcacttc
     1081 ttgaagtttt aaaagagaaa gtaaaaaatt tggcaaatat tagtcattat ttttctccag
     1141 atcttttaag aacaattgaa gaaggttttg atgcatctag gatttgcgat ttgattttaa
     1201 atactgtgcg tattaaaaaa caagttgctt atgagttttt tgttttaaca gatcttgagc
     1261 aaaaattagt aaaattaata gatttaattg ctcaagaaat agaagctaat aaaattcaaa
     1321 aagaaattaa aaataaagta cattctcgta ttgataaggt aaataaagaa tattttttaa
     1381 aagaacaatt aagacaaatt caaaaagagc ttggttctga tacgcaaaaa gaagatgagg
     1441 ttagagagta tcaaaagcgt ctggagttaa agaagaaatt tatgcacgaa gacgcttata
     1501 aagaaatcaa aaaacaaatt gaaaaatttg aacgcattca tcaagataat tccgaagcat
     1561 cgatgattca aacttacata gaaacagcat tagatgttcc ttttgaaaaa atttctaaga
     1621 aaaaacttga tattaaggaa gtttcaaaac agctcaacca tgatcattat gcattaaata
     1681 aaccaaaaga acgcatagaa gaatattttg cagttaggga acttttagaa aaaagaaaaa
     1741 tagcagaaaa agatggtgct aaagttatac tttgtcttta tgggcctcct ggcgttggta
     1801 aaacttcact ggcaaattct gtttcaaaag ctttaaaaag agagcttatt cgtatagctt
     1861 taggtggact tgaagatgtt aatgagctgc gtggtcatcg tagaacttat ataggcgcta
     1921 tgcctggacg tattactcaa ggactcatag aggcaaaaca aattaatcct gtaattgtat
     1981 tggatgaaat tgataaatta aatcgcagtt ttagaggcga tccaagtgcg gtgcttttag
     2041 aaattttaga tccagagcaa aattctaaat ttagggatta ttatttaaat tttaatattg
     2101 atttaagtaa agtcattttt atagcaacgg caaatgatat tagcaatatt cctgcacctt
     2161 taagagatag aatggaattt atagaactta gctcttatac tccaagtgaa aaatttcata
     2221 taatgaaaaa atatttaatt ccagatgagc ttaaaaaaca tggcttaaaa tccaatgaat
     2281 tatttattga tgatgaaact atagagctaa tcattagcga ttatactcgt gaatcaggag
     2341 ttagaaattt gcgtcgcaaa gtggcagagt tgtgtcgtaa gagtgctaaa aaactacttt
     2401 tagaaaatat taaaaaagtc attattaata caaaaaattt gaatgaattt ttagataaaa
     2461 aagtttttga aatagaaaaa aataatggag aaaatcaagt aggtcaggtc aatggtttgg
     2521 cttggacaag cgtaggtgga gatgttttaa aagtagaggc tgtaaaaatt aaaggtaaag
     2581 gagaattaac gctcacagga agtttgggtg atgtaatgaa agaatcagct agaattgctt
     2641 ttagcatgat aaaagtttta atcgatgaag gaaaaataaa aatacctaaa aaaataatta
     2701 ttgatcctaa agttaatgtt tatgatagtt ataatattca tatacatgtg ccagatggag
     2761 ctactccaaa agatggccca agtgcaggta ttacgataag cacagctatt gcttctattt
     2821 ttagtgataa aaaggttaaa gcagatgttg caatgacggg tgaaatagat ttaaaaggaa
     2881 aagttttacc aataggcgga ttaaaagaaa aattaattgc agcttataaa gcagatataa
     2941 aaacagcttt aattccaaga aaaaattacg aaagagattt aaaagatatt cctagtgagg
     3001 ttagagacaa tatggaaatc attgctgttg atactttcag tgatgtttta gaatatactt
     3061 tggtttaact ttattttgag aataaatgta taagaaagca aactttttac aagtttgctt
     3121 taaaagatta tagtccttca aaaggattat tgattacttc ttttctatcc actatataag
     3181 ggataagagc tacatgtctt gcacgtttga ttgcaacttc taccatttct tggtattttt
     3241 tgcttgtgcc tgttaaacgg cgtggcatga ttttaaatct ttcagataaa gcatgtttta
     3301 acattgctgt atctttataa tcaataaatt caacttttgc ttcagtgtat ttgcaatatt
     3361 tgcgagagta ttttcttttt tctgccatag tttatccttt aaaatggtaa attagtatca
     3421 tcgctatcat aagcatcgat atcaatttct tttaattttt cttcgtgttg tgggttttgg
     3481 tttctttgtg gagcagggtt tgcttttgct ttattaaaat tttgattttc actcatataa
     3541 ggatcatagc tttgattttc atagtttcca ctataattgt tgtttgaaaa gctattattg
     3601 ccaaaaccgc cttgttgtgg agcattggaa ttgccaagca tttccatatt ttcaacttga
     3661 atgctatgtt tagagcgatt ttgtccattt tgatcactcc attgttcaaa tcttaaacgt
     3721 ccttctatga gtacttttga accttttgta aggtattggt ttgcaacttc tgcggtgcga
     3781 ccataaaagc ttatatcaat aaagcaagtt tcttctcttt tttctccatt tgcggtaaat
     3841 cttcttgtta ctgctatagc ggaagctcca atagcactac cgctttgtgc ataacgcatt
     3901 tctatatcac gtgtaagatt tccaaccaaa acaactttgt taaacatctt tttccttatt
     3961 gaatttcagg agcatctaaa ggtttgattt cttttttaga ttgcttaatc ccgtggctta
     4021 gtttttccca agctgcaatt tcttttttat tttcatattt tacgattaaa aatcttatta
     4081 cttcttcagt gattcttaac accctttcaa gctcagcgat caagtttgta ggagctttga
     4141 aataaatcac aaaataagtt cctctttcgt attttttgat tttatacgct aattttctag
     4201 tacccattgg aacaacagtt tcaatttctg cactattttt ggttaggact tctttaacga
     4261 attccaactt cgcattcact tcctcttcag taagtgttgg ttttaagata aataaaacct
     4321 cataatgttt catcttttct ccttatggat attaaagccc atttttatga gcaaggattt
     4381 tgcataaagc aagactagat tatatcaaaa tatacttaat tagtcttgaa tacttaaggt
     4441 tttatctaaa tttgttttga tttcttcaag catagcaaaa cgttttttat acatggagcg
     4501 tttttgcgaa gggatttctt ctaggttttt ttgagagtgg tggagtttat agtatttgtg
     4561 tttattgatt tttattaatt ctccaccatt ttctagccaa attttttgat aatctacaaa
     4621 atagcctttt tcttttcctc tttgagaacg gatttgattt ttttcatgta cacctaaagt
     4681 agtttgaagt tttaaaattt cacaaagcat cttagagcat tctataagta aagcaacagg
     4741 gcgcaaacca tgacattttt tagttaaaat tttattaatt tctaaaatat taaaatcttt
     4801 gtatttatgt ccttgtatac aagaaagtag aagattgttt tctaaagtaa agcaaaaatt
     4861 acattgtaag attgtgtatt ttttaaattt taaagaaaaa gcccaaaaac cttcttcgca
     4921 aacattatag ttatatccta aaaaaagctc aaaatcttca tcaaaagaaa aaattatttg
     4981 ctcctcggga agaaatttaa aacaagcgag tcccttatca acatcataaa taagtgtttt
     5041 aacacgttca tttgctttaa aacttttatc gcaaaatctt cttgtagcat tgtaacaagc
     5101 atagggtctt tgagagaaaa agtcttttaa atgtttattt ttttctttat taagcgtttt
     5161 ttctagaagt cttacttgag gaaaatataa aatttttctt gcttgaaaac gcaaatagcg
     5221 ccaaaagatt atactttttc ttctatcagt aaaatttgga atagggtagg aaaatttttt
     5281 attcacctat aatccttgat atatcattat aagttgcaaa gagcattaaa cttaaaagta
     5341 ttgccatgcc tgtatagctt aaatattcaa aagtacgctg tggaactttg cgtctaaaaa
     5401 tcatttcata aagattaaaa agtatatgtc ctccatcaag cataggaata ggtaaaagat
     5461 ttaaaatgcc taaatttata gaaattaaag cagtgataaa taaaagcaaa gtaaagctat
     5521 tttgtgcagc ctttgaggta atttcagtca tggtgataat accgcctaaa ttttttgctt
     5581 caacttcacc acttatgagt tttacaatac ccttgatgat gagtgtagaa gcttgaaaac
     5641 tttcttgtgc ggcatattta aaactttcta aaccttggtg ttttacaaga gtgcttgtcc
     5701 catttggact gactccaagt tgaggttttt caacgatttg tccaaagtca ttgtatcctt
     5761 gtcctatttt tggagttaaa ataaattcta aattttttcc ttctctattg attaatattt
     5821 tcaaaggatc taaacttaaa tgctttgaaa tttcatcaaa ggtttgaatt cttataccgt
     5881 taatttctaa gatagtatca tttttttgaa gtcctatttc ttgtgcagca gagtttggcg
     5941 ctatgtttcc tatttgcgga gcaagtttgt ttagacctaa atttcctatg ataatataaa
     6001 gaaaaaaagc taaaattaga ttaaaaaatg gtccagcaaa aagaatataa atctttttta
     6061 aaggacttaa aatgctatag ctatctttgt ctagattttc aaaaccagga cgcatatcat
     6121 cttgtccttt aagtttaaca tatcctccaa gtggtaaagt gcttaagcga tagtttgtgc
     6181 ctttaaattc acgctctata agactttttc caaatcctat actaaaaact tcaactttta
     6241 cacccaaaga tcttgcagcc aaaaaatgtc ctaattcgtg aaagaaaatt aaaaatgaga
     6301 tgactaaaac agttgctaaa aattcaatag aataaaattt aattcccaaa atcaaaataa
     6361 caattaaaaa taataaagat ctcatttttc tccttttttt tgagctttta tataagtata
     6421 gatgtattca aatccagaat aaagagttaa aatcaaagct atgtaaagta gaatttcacc
     6481 gcctatccac tccatgatta aaaatcctat cgcagtcatt tgaaaagcgg ttttaagttt
     6541 gcctgcaaaa gaagcattga catttaaatt ttcgctaatc attacaactc taaaacctgt
     6601 gataaaaaat tcccttacta atataatata aattacccat tcattagctt ttcctgtaag
     6661 taaaagccct aaaaaagctg ctaaaacaag cattttatcg gctaatggat ctaagattcc
     6721 acccagtttt gtagtttgtt tccaagttct tgcgatgtat ccatcaaaaa aatcacttaa
     6781 agctgctaat gaaaaagtta aagcagcaaa atagttaatc caactttgat gaatattttc
     6841 aaaatgatga attaataaaa aaaatagcaa aggcgctaaa accattctaa aaatcgccaa
     6901 gatattgggt aaattcataa caagccttgt gaaattaaat gtaaaattat aatcaaaatt
     6961 gtataaaatt taagcaaaga cttagtaaaa atacaaaaaa agaatcagtt tatttttatt
     7021 taaattttgc ttaaaagcaa aatttaaata aattttacaa cttcatcaaa actaaaacga
     7081 tttttttgag gatttttttc atcgttgcaa tatcctaaag ctaccaccaa acttgatctt
     7141 tctttttgaa tatcaagtga taaataagaa tcaagctttt ctttatcaaa accacctata
     7201 gtgcaacttg ctatatttaa agcattagca ctgtaaagta tgctagctag agctatatga
     7261 gcttgttctc ttgcataaga tattttttgt tcttgattca gagattttaa aaaaggcata
     7321 taagcatcta agcgtttttg aatttctgtt tcactcatat ctctttttct aagtttttct
     7381 tcaaaataat ctaaaaaatc aagtcttgaa atgatgataa ttaatgcagc gcaatctttt
     7441 acatgttttt gttggttgca aattttagaa agttcttctt ttcttttctc atcttgcatt
     7501 actataaatt tccaaggttc cagtcctaag gaactggggc ttaatcttgt tatttctaaa
     7561 atagaattta aatcctcttt tttgagtttt tcatttttaa aatttctaca agaatatctt
     7621 gtgctaaaaa tttcaagttc ttttttcatt atttttcctt gtaaaattcg acgacttcat
     7681 taaaatttaa gcgttgagta gaatattttg gttcgtgggc tttatatcct aaggataaaa
     7741 ttacggcagt ttcaaaagga taagttaaat taagaaaatc atcaacctta gctttttcaa
     7801 agccacctat catgcaagaa tcaataccta agctcattgc agctagtgac atttgcatca
     7861 tagcaagata gcattgaagt tgtgcataat gatagagttc attatcattc attgcattgg
     7921 ttttatgagt ataaatttct aaaatttttt gaaaattttc ttcgctagaa cctgagaaac
     7981 gacgcacttg ctacattttg ttgattgtaa catagggttg agagtttaag attgtgttct
     8041 ttttgttcta atactacaaa tttccaaggc tcaaatccat gtgagcttgg ggctaagact
     8101 ccactttcta agataaaatg caaatccttt tcattgattt ttttatcatt aaaaagttta
     8161 caagctctgc gttttgaaat tagttcttta aaattcattt tattccttaa aatcaaaaat
     8221 aataatatta attataaaat gcaaagctta atcaaaaaat attatagttt gatatttttc
     8281 ttaaaaacaa aaccggattt ttcaaaaccc attttttgga tataaaattc atgagcttgt
     8341 gttctaaaaa aacttgaact tagttctaat tcttcatatc cttgatcttt tgcccaaatt
     8401 tggatttttt tcaaaaaagc ttgacctata ccttttcctc ttaaagcttc atctacgaca
     8461 aaatcacaaa tataaagaca atgattatga taaagtacat taaagggcat gactccacaa
     8521 gctgctttgt agcttccctc attttcatag gcaaaaagtt tataatgttg agtttgtgta
     8581 gcaagttgga ttttgtctaa aaaatctttc aaagataggt tatttcttaa ttgttttatc
     8641 aagggataaa ttttttccaa gtcttctttt agcttaattt ctttcatttt taaatccctt
     8701 aaatttcaaa aatttcaggt tttaatttta aaagtaagca aaaagttgcc aaaacagctt
     8761 gttcttgcat aaattcacga tctccatcta aataaagcgt ttcttggata aaagttccat
     8821 ctctaaacat tgcacctata taaatagtgc ctgattttat ttttccctca tctttttcgc
     8881 caactactcc gctaacagct aaggcaaaat caggattagc tgttttaaaa atacctttta
     8941 gcataaaata aacacaacgt tcactgtatt cgccattatt ttctaagacg ctttcgctaa
     9001 ttccaagcca ttcgtgtttg atgcggttgg aataacttac aatagaacct tcaaaaattt
     9061 cacttacacc tgaaattttg gttaaggtac ttgcacaaag tccacctgtg caactttcag
     9121 caaaagaaat ttttaatttt ttttctaaaa gtttagagct tataaaatgt atgggatctt
     9181 tacctaaaaa taccttttgt ccaaaaagat tttttacgct atttaaaaaa ccatcaagtt
     9241 ttccaaaatt agcgcaagtg gccttaataa gcacaagatt atctaaaagc ttggttgatt
     9301 ttatacttat ctcataagat tttgttaggg tttgcagtag caatatagcg ctttcatcat
     9361 ccatgccaaa aatgcaaaaa tatgcaaaat ttaattttat atgcccaaga agattgggta
     9421 atttttcgct tggatttatt ttaacgacat tgatttttga atttgaaaaa ttacacacaa
     9481 agctattttt actaaattct gctttatctg gaaccaaggt atcatctttt aagataagat
     9541 tatcatcatt taaagttgct aaaattttag caacagtcgc ataatgcaaa gggcttgtaa
     9601 ataaagtgat aaaatcatac tgatttaaga ggttttcaag caaaaagggt aaatctttat
     9661 cggttttact ttgtatgcga atttcgttga tttctttaaa tttttcttca taagttctat
     9721 aaatataatt tttgaatttt tcgtttatag taagctcatc tcctataaga taaagcaaat
     9781 gtttcataaa ttttcctttt tttcttataa ttatagccaa aaacaaagta gaaattaaag
     9841 ctaatttgag tagaatttaa gattattaaa aattaggtgg aaaaaatgga ctacaaagaa
     9901 actctacttt tgcccagcac tacttttgct atgcgggcga atttagcgga acttgaaccg
     9961 caaagattta aaaaatggtt tgagcaaaat tatgcttatg aaaaaatgaa agaaaatcgc
    10021 aaaaatgcga aaaaaagttt taccttacac gatggccccc cttatgctaa cggacatatc
    10081 catataggac atgctttaaa taaaatttta aaagaaacta ttatcaaaac gcattatttt
    10141 aaaggtgaga gtgtgcgttt tactccaggg tgggattgtc atggtttacc tatagaacaa
    10201 caagtagaag taaagcttgg agaaaagaaa aaaagcttaa gtaaaaaaga aattcgtgag
    10261 ttttgcagac aacatgcgag tgaatttgta gatatccaaa gagaagaatt taaaaattta
    10321 ggcattattg cggattggga taagccttat ttgactatga aatttgagtt tgaagcagcg
    10381 atttatagaa ctttatgtga gattgctaaa aaaggcttac tttgcgagcg ttctaaacct
    10441 gttttttgga gttgggcggc aaagtcagct ttagcggaag ctgaagtaga gtatcaagat
    10501 aaagaagatt attctatctt tgtggctttt gatttagatg taaaagcttg cgaaaaatta
    10561 ggcgtttcaa aagcaagcgc agtgatatgg acaactacgc cttggacttt ggtggctaat
    10621 caagctatag ccttaaatcc taacgaaaat tatgtgatca ctaaagaagg tttgattttt
    10681 gcaagtgctt tgcttaaaag catggtagaa aaaggactta caagtggaga aattcaaaaa
    10741 gaattaaacg caaaagaatt tgaaaaactt gaagctatca atcctttaaa tggaagaaaa
    10801 tctgttttaa ttatgggcga gcatgtattg atggatggtg gaagtggact tgtacatact
    10861 gcaccaggac atggcgaaga tgattactat gcttgtttga aatacggtat tgaagtttta
    10921 atgcctgttg atgatagtgg atgttatgat gaaactttaa gagctaaagg gcttttgcct
    10981 tctcatttgc ttgaagagtt tataggtctt catattttta aggccaatga aaaaatttta
    11041 gaacttttag gcgaaaaact tttacattct tctaaattta tacactctta tccattttgt
    11101 tggagaacgc ataagcctgt gatttataga gctactaaac aatggtttat tttaatggat
    11161 gaaccaaaac ttcaaggaaa aactttaaga gagtgtgcaa aagaacaact tttaaaaaca
    11221 accttttatc cgcaaagtgg ggtaaaaaga ataggttcta tggtggaaaa tcgcccagat
    11281 tggtgtattt caagacaaag ggactgggga acgcctatag ccttttttag agataaaaac
    11341 actaaagaag tgatttttga tgatgaactt tttgactttg tagcagctat ttttgaaaaa
    11401 cacggtgctg atgcgtggtg ggagtttgaa atcaaagatt taattcctac aaattcaaaa
    11461 tacaaagctg aaaatttaga aaaagtatat gatattttag atgtttggtt tgatagcgga
    11521 agtactttta atgcagtttt aaatagcgga ctttatgacg caggagaaaa aagagcaagt
    11581 atgtatttag aaggaagcga tcagcatcgg ggttggtttc aaagctcttt gcttgtaggt
    11641 acagcgatca atgaaagcgc accttatgaa agcattttaa ctcatggttt taccaccgat
    11701 gaaaaagggc aaaaaatgtc taaatctaaa ggcaacgtga tcgctcctga atatgtagca
    11761 aaaacctatg gagttgaaat tttaagactt tggatacttt taagtgatta ttcaagtgat
    11821 ttaaaaattt cagacaatat cttaaaacaa gtgggcgaac aataccgcaa aataagaaac
    11881 actataagat ttttacttgc caatacaaat gacttaaaag atttagaagt taaagaattt
    11941 agttttattg ataaatggat attaagccgt gcaactaaag tttttaaagc aagtaaagaa
    12001 gcattttttg cttatgaatt tgctaaaggt tttagtttgc ttttaaattt cttaagtgcg
    12061 gatttaagtg ggatttatct tgatatcagt aaagataggc tttattgtga tagcgaaaat
    12121 gctcaaagaa gaaaatctgc tcaagtggct atggctttga tagcaaaaga gcttttaaat
    12181 ttacttgctc caaatttaag ctatagtgta gatgaggctt tagaacatgc taatgtttta
    12241 atcaaaggcg atgcaaaaga tgtatttgat ctaagtttaa ctcaggattt tgattatgat
    12301 tttggtatag atgatacatt tttaatgagt gctagagaga aattttttga acaaattgat
    12361 atacttaaaa aagataaaat cattaaatct actttggaat taaatttaaa catcagtttt
    12421 aataaattcc caaatgagga attagccgat tggtttatgg taagtcaaat cagcaatgaa
    12481 aatgaagaaa ttttggctga atttgaagta gagaatgaga aatttaaaat caccaaagct
    12541 tcactttgta aatgcccaag atgttggaaa cttcaaagta aagatgaaga aacaccttgt
    12601 ttaagatgtg aagaagtttt aaaagggatt caatgctaga aaatcctatt ccaaatagca
    12661 ttatcatcac aactatagcg gtggttttgg cttttagtgc tttagcagta tttttgatca
    12721 aaaaaacaaa ggaaaataaa tgataacttt aaaagaagct ttaaaatact ccaaagaaga
    12781 acttgaaaat ttaaaaaaag aactcaatga aaaagcaaaa aaagaaaaaa aaataggtgc
    12841 ttatatcgaa caatttttag ataaagactt aagtgtttca ggtgaaggtg tgcctgtagc
    12901 tataaaagat aatatcagtg taaagggctg ggagcttact agtgcgagta agattttaca
    12961 aggttatatc gctccttatg atgcaagtgc gattgttaat ttaaaagcta atggtttttc
    13021 tccttttggg cgttgcaata tggatgaatt tgctatggga agttcaacag cgagttctta
    13081 ttatggcaaa actttaaatc ctttaaattt tgagcgtgtg ccaggtggtt caagtggtgg
    13141 aagtgctgct gcggtagcgg gtggcttggc tttggcaagt ttgggttctg atacaggagg
    13201 atctgtacgt cagcctgcag ctttttgtgg ttgtgtagga tttaaaccga gttatggaag
    13261 agtgagtcgc tatggtttgg cttcttattc ttcaagtttg gatcaaattg gggttttaac
    13321 gcaaaatgta gaagatgcgg caattttata tgatgcgatc gcaggatatg acaaaatgga
    13381 tagcacgagt gcaaatatcg agtttatcaa aaccgctcca aatttaaatg caaataaaaa
    13441 attaaaaatt gcagtgattg aaaattatgt caatgatgca gatagtgaag taaaaaacgc
    13501 acttttaaaa accatagata tgttaaaagc taatggacat gagattgtat ataaaaattt
    13561 gcttgattct aagtttgata tcgcagcgta ttatatcatc gcaacagctg aagcaagtgc
    13621 aaatttaagt cgttatgatg gggtgcgtta tggcaagcgt tctgaaaata tccaaaattt
    13681 aaaagaaatg tatgtaaata cacgcagcga aggttttgga gaagaagtaa aaagaagaat
    13741 tttgttagga acttttgttt taagcagtgg atattatgat gcgtattata ttaaagcaca
    13801 aaaagctaga gcttttatta aggcaaaata tgaagaaatt ttgcaagatt gtgatcttat
    13861 ttttatgcct gtaacgccta caacggcttt taaatttgat actcaaaaaa gccctatgca
    13921 aacttattta gaagatgttt atactatctc tgtaaattta gcaggacttg gaggcattag
    13981 tgtgcctgtt gcaaaagata aagaagggct taatatatca gcacaactga tttgcaaagc
    14041 ttatgatgaa caaaccttgt tagatggggc tttaagttta gaacaaatga ttaaacatta
    14101 aggatgaaag atgaaaattg taaaaagagc tttaactttt gaagatgtat tattgcgtcc
    14161 tgggtattct gaagttttac ctaaggaagt aaaaattcac actaaattaa caaaaaatat
    14221 cactttaaat atgcctttaa tctctgcggc tatggataca gttactgaac acagggctgc
    14281 tattatgatg gcaagacttg gagggcttgg agtgattcat aaaaacatgg atatagcctc
    14341 acaggttaga gaagtaaaaa gagtgaaaaa aagcgaaagc ggggtgatta tcgatcctat
    14401 ttttgtaagt cctaaggcaa gtgttgcgga agctttagaa attatggcag agtatagaat
    14461 ttcaggtgtt cctgtagtag atgaagataa gaaactaata ggcatactta ccaatcgtga
    14521 tttaagattt gagagtaatt tttcaaattt ggttgaaaat gttatgacta aaatgccttt
    14581 aattactgct ccaaagggtt gtactttaga tgatgcggaa aaaattttca gcaccaacaa
    14641 agtagaaaaa cttcctatag ttgatgaaca aggacgcttg gaaggactta tcactataaa
    14701 agatcttaaa aaacgcaaag aatatcctga tgccaataaa gataattttg gaagattacg
    14761 cgtgggtgcg gctataggag tagggcaaat ggatcgtgtg aatgctttag ttgaagcagg
    14821 cgttgatgtt gttgtgcttg attctgcgca tgggcattct aagggtatta ttgatacagt
    14881 aaaagcaatt aaggctaaat atccaaattt agatcttatc gcaggaaata tcgccactgc
    14941 agctgcagca aaagcacttt gtgaagcagg agtagatgcg gttaaagtag gtattgggcc
    15001 aggaagtatt tgcactacac gtattgtttc aggtgtgggt gtgcctcaaa tttcagccat
    15061 tgatgagtgc gtagaagaag caaataaatt tggcgttcct gtgatagctg atggtgggat
    15121 taaatattca ggtgatattg caaaagcttt agctgcaggt gcgagttctg ttatgatagg
    15181 atcgctttta gctggaacgg atgagagtcc aggagatctt tttacttatc aaggaagaca
    15241 atataagtct tatcgtggta tgggttcgct tggggctatg caaaagggaa gttcagacag
    15301 atactttcag caaggtactg ctcaagataa acttgttcct gaaggtatag aagggcgcgt
    15361 tccttatgta ggaagtataa gaagcgtggt gcatcaactt ttaggaggtt tgcgttcttc
    15421 tatgggttat gttggagcta aagatataga agattttcaa aaaagagccg aatttgttga
    15481 aattaccact gcagggctta aagaaagtca tgtacatgat gttactatca ctcatgaagc
    15541 accaaattac aaggtcaatc atcaatgagt tttgaagaaa atttaaaaca cgctaatgaa
    15601 tctttggaaa aattaaacaa tcaagagctt gccttagatg aaagtgtaaa aatttacaaa
    15661 gagggtttag aaagtatcaa aaaagcaaga cttgagcttg aaaaagcaaa attagaagtg
    15721 gagcaaatcg atgagtaaaa tagcggcttt acagtttcca actttagctt taagtgaatc
    15781 aaggcttgat tattatctca aagcttcaaa agacaatggg gcaaatttag tagttttggg
    15841 cgaatatgtg atcaacagtt tttttacaga acttttgcat atgccaaaaa atatgataaa
    15901 agaacaaagt gaagctaaaa aagaaagctt gattaaactt gctaaaaaat acgaattaga
    15961 aatcatcgct ccttatgtaa gcgttgaagc taaaagttat aaaaaacttt gcttaaaagt
    16021 gactccaaat ggtgttaaaa gttatgaaca gcaaatttta atgccttatg aacattggaa
    16081 tgaagaaaaa tttttcagca acaaaactcc atcagaatta aaaattttta cttttaatta
    16141 tgaaaaatta aaatgtgctt tactttttgg ttttgagacg cattttgata ttttttggca
    16201 acagattatg gcgaaaaaaa ttgatttggt tatcgttcct agtgcttgta cctttgaaag
    16261 taaacaaaga tgggaagaac ttttaaaaac aagagctttt ttaaattcta caagcatttt
    16321 aagagtaaat cgcataggca aaacaaaaga tgagtggaat ttttacggcg atactctgtt
    16381 tatcaatgct tttggcgaga tagaaagtaa attaggttct gaagaagaaa tgcttatcat
    16441 agagcctaaa aaaagtgatg aagcaagaaa actttggggt tttgataaaa ttcttaagaa
    16501 tttttaaaga aggtaaatat gagaaaaatt ttacttcaaa tttttatttt tagcgtatta
    16561 tttatagtaa cttttgccat taatcgtatt ttaatgcaaa attctttcat ccctacaggt
    16621 ttaattagtg ataaaaatga aatcttttta atgtatcttt taggtgtttt tcatgatata
    16681 agatttttaa gcgcagcgtt t
//
LOCUS       DBBXPZ010000034        16631 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.036, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000034 DBBXPZ010000000
VERSION     DBBXPZ010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16631)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16631)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16631
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.036"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            86..1420
                     /gene="tig"
                     /locus_tag="ACJFD7_000910"
     CDS             86..1420
                     /gene="tig"
                     /locus_tag="ACJFD7_000910"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005854 - nascent polypeptide-associated
                     complex [Evidence IEA];
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0051083 - 'de novo' cotranslational protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HGG0859733.1"
                     /translation="MEVKAKQLDSVNATASVKIPSGMIKSEVENLAKKASKSVKMDGF
                     RPGKVPVSAVLKRYERELTQDAEQNLFKSAVNSALQELKKENKELVGEPYFEKFDRKD
                     GEIIAELILSFKPEIKLEGYEKLIPEYQTPKVSKKEIDEKKDELLKRFATPEAIKTKR
                     ALKEGDFAKFDFEGFVDDKAFEGGKAENYVLEIGSKQFIPGFEDGMVGMKIGEEKDIK
                     VTFPKEYGAAHLAGKDAVFKVKLHEIQELKIPELDDEMLKKLLPGEEKASVEVLDEKL
                     KEQIKNEKLFKLVNDELKGKFADALIEKYNFDLPKGIVEQETDMQMRAAFNTFSEKEI
                     EELKASKEKYQEKRDSFKEEAQKSVKLTFIIDELAKLRKIEVNDQELIQAIYFEAYRY
                     GMNPKEHLENYKKQGALPAVKMALIEEKLFNDIFIPKTEKSEKVSKKEKEDK"
     gene            1420..2004
                     /gene="clpP"
                     /locus_tag="ACJFD7_000911"
     CDS             1420..2004
                     /gene="clpP"
                     /locus_tag="ACJFD7_000911"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009368 - endopeptidase Clp complex
                     [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HGG0859734.1"
                     /translation="MFIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIV
                     AQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFL
                     LSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQK
                     VAKIAKDTERDFFMSAQEAKEYGLIDKVLEKSFK"
     gene            2040..2567
                     /gene="def"
                     /locus_tag="ACJFD7_000912"
     CDS             2040..2567
                     /gene="def"
                     /locus_tag="ACJFD7_000912"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HGG0859735.1"
                     /translation="MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGV
                     GLAAIQVDIPLRVLLVNIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDF
                     FEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFTKRQKF
                     DKEFKKKKKNHKKEK"
     gene            2564..4069
                     /locus_tag="ACJFD7_000913"
     CDS             2564..4069
                     /locus_tag="ACJFD7_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HGG0859736.1"
                     /translation="MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVE
                     RIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDLAIALLILLQNEELDDFFVVGEL
                     GLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
                     FKEKNYENFRFSHNHPLFANPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALG
                     MHNILFEGSPGSGKSMCAKRLVYIMPPQSLNEILMQNAYMSLDSKDCEFTKIRAFRHP
                     HHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIESLREPLEDHKIHIS
                     RVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLY
                     VAMDEISKDDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAK
                     DTLDLAISRYNLSLRSLNKILKVSRSIADLEQSLNISKTHILEALSFRARN"
     gene            4071..4769
                     /locus_tag="ACJFD7_000914"
     CDS             4071..4769
                     /locus_tag="ACJFD7_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HGG0859737.1"
                     /translation="MENKSIAIFIDAENIPAKYAKSIFDIASDYGEVIIKRIYGDWTQ
                     KNIQGWREQIAEYSLIAMQQFNFAANKNSSDMYLITEIMSIFYEKNIDIFVIVSSDSD
                     YTSLIQKLRENKKQVIGMGLEKSIKSYVNAFSEFFYLDKDESKKEDILSKDYLRALIN
                     ITEQLIDEKGRAEYAQIRTNMNRKYSDFHPQNYGFKNFRALIQKFLPKMKKFEEEREK
                     NIYFLVKKDYESYY"
     gene            4753..6123
                     /locus_tag="ACJFD7_000915"
     CDS             4753..6123
                     /locus_tag="ACJFD7_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HGG0859738.1"
                     /translation="MKAIIDNIKILEQNAINKGLDELILMENAGLNLAKLIKKEAKKI
                     RIQRKIRKVKILFLLGGGNNASDGLVALRNLKHAKAYKIGFKENTLFKKQEQILQNYA
                     FKFCKKEPNFKKFHIIIDCILGTGSNRCLDEKTSLIIQKVNQSKALKIACDIPTNLGF
                     YPCFKADITFCMGALKEILLEDFAKEFVGRIKIANLGIRSKKFYPNSQAFLLEKKDLK
                     TIDRKINANKGNFGHIYIVANASAGTLAGLGALNFGAGLVSLVAQKSFSPLLMLKEKI
                     ENNASAIALGMGLENLDFLKDEILQNTPLILDANCFLSEALLWYLNRKDVVITPHPKE
                     FIKLYKMCFDENLDIETLQKNRFFYARKFSQNYDCVLVLKGANPIIVQKEKLFVVNLG
                     NQALAKGGSGDVLSGMIAAHLGFGFSALEAAKNATLAHGLVAKKYKFNKNSFDALKLI
                     KGLKCL"
     gene            6114..6680
                     /gene="purN"
                     /locus_tag="ACJFD7_000916"
     CDS             6114..6680
                     /gene="purN"
                     /locus_tag="ACJFD7_000916"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HGG0859739.1"
                     /translation="MLVKLAVLFSGNGSNLENILEKLHKKTIGENTYEVVLCICNKKD
                     AFGVQRAKKFGLDTVIVDHKAYNTREEFDTILVQKIKESGANLTVLAGFMRILSPVFT
                     KNIKAINLHPSLLPLFKGAHAIKESYESDMKVAGVSVHWVSEELDGGMIIAQKAFEKR
                     NLSFEEFEEKIHSLEHEILPLSVIEIFS"
     gene            6752..7471
                     /locus_tag="ACJFD7_000917"
     CDS             6752..7471
                     /locus_tag="ACJFD7_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HGG0859740.1"
                     /translation="MFEWIFSIDAWITLATLSALEIVLGIDNIIFLAILVSKLPPEHR
                     DKGRILGLTFAMITRILLLLSLFWVMKLVTPLFSVLGNEISGRDLVLLLGGLFLIVKS
                     IKEIKEQISHQEESQSHFKASNKLWIVVAEIAVIDIVFSLDSVITAVGIAQDVTIMII
                     AVIIAVAVMLFASKPIADFVEKYPSIKILALAFLVLIGVVLVAESFDIHIDKAYIYTA
                     MAFALVVQILNILDQRKEKNG"
     gene            7464..7673
                     /locus_tag="ACJFD7_000918"
     CDS             7464..7673
                     /locus_tag="ACJFD7_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HGG0859741.1"
                     /translation="MAKDANGIELNTGDSVSVIKDLKVKGASTTLKRGTTIKNIKLTS
                     KEGEIEARVDKFGVIVLKTEFLKKI"
     gene            7683..8867
                     /locus_tag="ACJFD7_000919"
     CDS             7683..8867
                     /locus_tag="ACJFD7_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HGG0859742.1"
                     /translation="MRILLVLRGNYYAGQEEFIKNNKLQNYTLDLNALRLLSGSVKYI
                     VSEYKILNVKNDEDLSKILLKLLEMRMQKGEFCIINAYNETLKIYKDLAKQYRYKMYV
                     IVFDSSLKQCQEKNLLEAKKNGYIIPYALLEKTQDLLKKNPKKYPILDSSDWKKCLYQ
                     MPNLSKYKKIHHIGDLQGCYSVLKEYIKTIKEDEFYIFLGDYINRGIENGKVIKFLLK
                     ICEKENVCLLEGNHERHLIKWANGELSNSKEFNENTLKDFRKEKLTPRDARKLYPHLK
                     ECLYYKFQNKFIFCSHGGVNFIPSKPEKISFIPSHDFIYGVGGYEDSQKIANQFCNFT
                     SDNLYQIFGHRNKEKLPMKIAKRVFLCEGKIDDGGYLRVVTLDEKGFECIEIKNQIYK
                     KK"
     gene            complement(8880..10238)
                     /locus_tag="ACJFD7_000920"
     CDS             complement(8880..10238)
                     /locus_tag="ACJFD7_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HGG0859743.1"
                     /translation="MDPSQVLDLNQTSTASFDAGYSILMVVVALALVFLNGFFVLSEF
                     SIVKVRRSKLEEMVKEKKAGAKKALEVTSRLDTYLSACQLGITLSSLALGWIGEPAIA
                     KMLEIPLINLGFSTVIIHTMAFIIAFSIITLLHVVLGELVPKSIAIAVADKAVLFIAR
                     PLHWFWILFLPCIKIFDFLAAISLKLFGIKPAKESELTHSEEEIKIIASESQKGGVLD
                     EFETEIIRNAVDFSDTVAKEIMTPRKDMICLNKQKSYEENMQIICEHKHTRFPYIDGS
                     KDTILGMIHIRDIIQNELSHKSQNLDTFVKPLILVPENISISKVLVMMNKERSHTALV
                     VDEYGGTAGILTMEDIMEEIIGEIKSEHEEDSYKKLAENIYEFQGRCDIETVEEMLVI
                     NYDEDLEQVTIGGYVFNLLGRLPMVGDRIEDELCYYEVKKMDGNSIERVKVVKKTNKD
                     EE"
     gene            complement(10338..11543)
                     /locus_tag="ACJFD7_000921"
     CDS             complement(10338..11543)
                     /locus_tag="ACJFD7_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HGG0859744.1"
                     /translation="MIMFSSFFKSKKWALWAYLGLFLLLFFLYIQTSLNVAINSWYSD
                     FYNVLQKPKIELLDSNSTQKIEENLENNATLIQEANQRAEQNFQKANFINKGALYYYQ
                     NLLEYFFNSRAMIEKPNYSASDFYALILVFLAIAIPYVLIATINIYFASVYAFKWREA
                     MTFSYLKFWKNKDDNIEGSSQRIQEDTYNFSKIVESLGLSFIKALMTLVAFIPILWSL
                     SDVVSKALFANLSENSSFYFLKNIDGLLVYIALLISLGGLVVSWFVGIKLPGLEYNNQ
                     KAEAAFRKELVYAEDNRKEYAKNETMIELFTGLKFNYKRLFLHYGYFNIWLILFEQMI
                     VIVPFLIMAPGLFAGAIGLGIVMQINNAFDQVRSSFSIFITNWTTITQLRSIYKRLKE
                     FEKNISYKS"
     gene            complement(11589..12335)
                     /locus_tag="ACJFD7_000922"
     CDS             complement(11589..12335)
                     /locus_tag="ACJFD7_000922"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HGG0859745.1"
                     /translation="MKSSVIFGFVLSLILHTLVLMFFLFSFYTQEKSSGVDFKQGAEF
                     TSIMMVSELPIGELKEVSIDQKKSNSQDKNKKQDERISLNSQDKNAVLKVQKKIEKQD
                     ENQAQKEIANASENSKFKNESLSAPLQSNEDKTQTIVSGNAKEQVKSYQALLMAHLTK
                     FKKYPQEAIMQKQEGVVRIRVSIDESGNVLSKELKKSCPYAALNDEALSLFKRASPLP
                     KPPKEMLKNGDKISFVMPIDYNIKDYLGKK"
     gene            complement(12337..12747)
                     /locus_tag="ACJFD7_000923"
     CDS             complement(12337..12747)
                     /locus_tag="ACJFD7_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HGG0859746.1"
                     /translation="MIKTEMAHKEEELSEINITPFIDIMLVLLIVFMAVTPLITSSIK
                     IELPKSSQQAEDKLKNPIILYLNTDNTLAINDDKLSLENLSSALDIKTKGNKEEIIYF
                     HIDKSVKYEDIMQVMQKLKENGYGKIALSSKKMD"
     gene            complement(12734..13495)
                     /locus_tag="ACJFD7_000924"
     CDS             complement(12734..13495)
                     /locus_tag="ACJFD7_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HGG0859747.1"
                     /translation="MLKKMFLFCFLLLNLNAEVNATDTNLSFDSSKIETEAPKIELSL
                     SSLYQNADEVVKGVIYILVLFSILAWAVFISKLMQFYFMKKNLDLSIQKIKELKNLNE
                     LDQTKDFAGVLSLEIQDELEKSEYKNDHIKERIELRLQNTISKQITASKNGLSLLASI
                     GASAPFIGLFGTVWGIMNAFIGIANLGNTSLAVVAPGIAEALFATAFGLIAAIPAVLF
                     YNYLTRKNLKLMHHLDELANFVYILFHRSYFNDKN"
     gene            complement(13507..15774)
                     /locus_tag="ACJFD7_000925"
     CDS             complement(13507..15774)
                     /locus_tag="ACJFD7_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HGG0859748.1"
                     /translation="MKKLSLFCAVGLCFASFAFSEELEFDSLEISGSKIKNDEKPFVT
                     PGATSTREGIGSDTQSIDSIVRSIPGTYTNTDQAQGTVQVNIRGMSGFGRVNTMIDGV
                     TQTFYGSASDDPARFHSQTGTSAFGAVIDTNFLIGVDVTRGTFEGVGGANALMGSANF
                     KTIGINDIVHDGNIFGFLGRFSYGSNGIGPSYMSAVAGKTELENNGYVGALFGYSAKR
                     ITQNYTVGGGGKIGSSMVDTDGDGIADTNIAPFDPDFLTQKPNSQLFKLEYVPNSFTN
                     TIFSYRRYQNELAGRKIHNDNYQLDFWHNPNEWLNVNTLIAYNQGIQTYGSKSTFAAN
                     DAIANTKAKNTATTFDISDTLEGEWHGFNLNTRFGANILLNDYKNTLNTSIQGVNSIP
                     FQPRGKQNLFTYYLDNSLNYGIFTLDTNVNLLDWNIKGHRPACDEVNFMCFPKAATDI
                     DKNGLRLNASVMLSAAIHELFTPFVSFARTNRAPNVQEMFFSNNEGNGINPFLKPEQA
                     NTWQIGFNSFKHGLLKDDDRFGFKAVYYHTKIKDYIYNEQFYLEDPSKVPPSSQFYMH
                     LNSADDTIFKGVELELSYDLGFAYAKAMYSRQDTSSTISQTSGPLLGSFSASKIMELP
                     KDYVNVELGFRLNDKISFGGIAKYTGKAKRVNPNTDDWNKDPNNPYYPKPTTQDLPKI
                     PIIVDLYWNIEWFKNLTMRAEVQNLFDKNYMDALNAYNSLDNQLQYNGAGDPIYLFSN
                     SARGRTFIVSFEYKY"
     gene            complement(15771..16622)
                     /locus_tag="ACJFD7_000926"
     CDS             complement(15771..16622)
                     /locus_tag="ACJFD7_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HGG0859749.1"
                     /translation="MKFYTILSILFISFMLSACAVLQKSSPLQENKDFYILDTHTQKK
                     ISFEDMILELLKADVILLGEKHDEVKHKISQVMIFNALEGNLSSQNINFDVALEMLAS
                     TEQNHLDKAFKNKKTIKANELTNALNWDKVWKWKDYEQFVNVVFYSKSKILGANLSRS
                     EITSIYNGAQPLKGYVSTTNEVKKQLFDIISLSHKLNPEENKELLDKLVEIQQFKDRR
                     MADVLVHHVNKVLLLAGSYHTSKKIGIPLHIQDFKSSKKIVVVNLSYGEIDLKDSDYV
                     LIYKGEE"
BASE COUNT         6018 a         2433 c         2580 g         5600 t
ORIGIN      
        1 ataaattact ttaaaatttt atgcaagtaa taaggaaaaa tttgctatca ttgaaggcaa
       61 attttatttt ataaggaaaa aaactatgga agtaaaggca aagcaactag attctgttaa
      121 tgcgactgct agtgtaaaaa ttccttcagg aatgatcaaa agtgaagtag aaaatttagc
      181 aaaaaaagct tctaaaagtg taaaaatgga tgggtttaga ccaggaaaag ttcctgtaag
      241 tgccgtactt aaaagatatg aaagagagct cactcaagat gcagaacaaa atctttttaa
      301 atccgctgta aatagcgctt tacaagaact taaaaaagaa aataaagagc ttgtaggtga
      361 gccgtatttt gaaaaatttg atcgtaaaga tggagaaatt attgctgaat taatactttc
      421 ttttaaacct gaaatcaaac ttgagggtta tgaaaaactc atccctgaat atcaaactcc
      481 aaaagtaagt aaaaaagaaa ttgatgagaa aaaagatgaa cttttaaagc gttttgctac
      541 tcctgaagct ataaaaacaa aaagagcttt aaaagaaggt gattttgcaa aatttgattt
      601 tgaaggtttt gtagatgata aagcttttga aggtggtaaa gctgaaaatt atgttttaga
      661 aattggttct aagcaattta ttccaggttt tgaagatggt atggtgggaa tgaaaatagg
      721 tgaagaaaaa gatatcaaag taactttccc taaagaatac ggcgcagcgc atttagcggg
      781 taaagatgca gtatttaaag taaaactaca tgaaattcaa gagcttaaaa ttccagaact
      841 tgatgatgaa atgcttaaaa aacttttacc aggagaagaa aaagctagtg ttgaagtttt
      901 agatgaaaaa ttaaaagagc aaatcaaaaa tgaaaaactt ttcaaacttg taaatgatga
      961 attaaaaggc aaatttgcag atgctttgat tgaaaaatat aattttgatt tacctaaagg
     1021 catagtagaa caagaaactg atatgcagat gcgtgcggct tttaatactt ttagcgaaaa
     1081 agaaattgaa gagcttaaag caagtaaaga aaaatatcaa gaaaaacgtg attcttttaa
     1141 agaagaagca caaaaaagtg taaaacttac ttttatcatt gatgaacttg caaaattgcg
     1201 taagattgaa gtaaatgatc aagaattgat tcaagcgatt tattttgaag catatcgcta
     1261 tggtatgaat ccaaaagagc atttagaaaa ctataaaaaa caaggagctt tgcctgctgt
     1321 gaaaatggct ttaattgaag aaaaactttt taatgatatt tttataccaa aaacagaaaa
     1381 atcggaaaaa gtgagcaaaa aagagaaaga agataaataa tgtttattcc ttatgttatt
     1441 gaaaaatcta gtcgtggtga aagaagttat gacatttatt cacgcctttt aaaagataga
     1501 attattatgc taagtggtga aattcatgat gaacttgccg cttctatcgt agcacaactt
     1561 ctttttttag aagctgaaga tcctacaaaa gatatttatc tttatatcaa ttctccaggt
     1621 ggtgtaatta caagtggttt tagtatttat gatactatga actatatcaa acctgatgtt
     1681 tgtacgattt gtataggaca agctgcttct atgggagcat ttttgcttag ttgtggcgca
     1741 gaaggaaaac gttttgcttt gcctaattca cgtattatga ttcatcaacc tttaggtgga
     1801 gctagaggtc aagccacaga tattgaaatt caagccaaag aaattttaag actcaaaact
     1861 atacttaatg atattttggc aaaaaatact aagcaaaaag ttgcaaaaat agcaaaagat
     1921 acagaaagag attttttcat gtcagcacaa gaagctaaag aatatgggct gattgataag
     1981 gttttggaaa aaagttttaa atgatttctt tggagatcat ttaaaacaaa ggttttttaa
     2041 tggttagaaa aattatcacc tatcccaatc ctagactttt tttaaactct gaaattgtaa
     2101 ataaatttga tacagaactt cacaccttgc ttgatgatat gtatgaaact atgatagcaa
     2161 gtaatggagt aggtttagca gctattcaag tggatattcc tttgcgtgtt ttacttgtaa
     2221 atatttttga tgaaaacgat gaacaaaaaa aagaagattt gctagagatt atcaatcctg
     2281 aaattattcc tttagatgaa gaaatgatca cttgcacaga agggtgtttg agtgtgccag
     2341 atttttttga agaagtgaaa cgctataatc atatcttgct taaatatcaa gatcgctttg
     2401 gagaatttaa agaacttgaa gcaaaaggtt ttttagctgt ggctattcaa cacgaaaatg
     2461 atcatttaaa tggacattta tttatagaaa aaatttcctt tactaagcgt caaaaattcg
     2521 ataaagaatt taagaaaaaa aagaaaaatc ataaaaaaga gaaatgaaaa aactaaagtg
     2581 cataagcttt catgaaggct tagacattat agaggtagaa tccactttta caagaggttt
     2641 gccaaattta agcatagtag ggcttgcaag tacagcgatt aaggaaagtg tcgaacgcat
     2701 caaagccaca cttttaagtt gtgattttgc ttttcctgct aaaaaaatca ctatcaatct
     2761 tagtccttca ggcatcccaa aaaagggatc gcattttgat ttggctatcg ctttattaat
     2821 ccttttgcaa aatgaagaat tagatgactt ttttgtagta ggagaattag gacttgatgg
     2881 aagtattaaa agcacaaatg agcttttttc tttgcttttg tttctctctg ctaaaattaa
     2941 aaaagctaag atcgttgttc caaaaagtat agcacaaaaa gcttccatga taccaaattt
     3001 agaggtttat ggacttgaaa atttaaatga agcaatagag ttttttaaag aaaaaaatta
     3061 tgaaaatttt cgtttttctc acaatcatcc tttatttgca aaccctttac aaatagaaaa
     3121 tgaaattttt ttacaaaata tggattttaa acttgatttt aaagacatca aagggcagga
     3181 aaaagccaaa agagcttgta tgatagctgc tttaggtatg cataatatct tatttgaagg
     3241 aagtccagga agtggtaaaa gtatgtgtgc taaacgcctt gtttatatca tgcctcctca
     3301 aagtttaaat gaaattttaa tgcaaaatgc ttatatgtct ttagattcaa aagattgtga
     3361 atttactaaa attcgtgctt ttcgtcatcc tcatcatact tctacaagag caagtatttt
     3421 tggcggagga acaaaaaatg ctagaattgg agaagtcgca cttgcaaatg gtggagtatt
     3481 gttttttgat gaatttccac attttaacaa gcaaatcata gagagtttaa gagaaccttt
     3541 agaggatcat aaaattcata tttcaagagt aaattctaaa atcacttatg aaacaaaatt
     3601 tagctttata gctgcccaaa atccttgtcc ttgtggaaat ttattttcta aaaatctttc
     3661 ttgtgtttgt agtgaaaatg agattaaaaa atacaaaaat cacatttcag ctcctattat
     3721 ggataggatt gatctttatg tagctatgga tgagatcagc aaggatgata aaacgagtat
     3781 aagttctaaa gaaatgagtg aaaaaatttt acaagctttt atttttagta aaaaacgggg
     3841 gcaaaaagaa tttaatggga aattaaaaga tgaagattta agtcgttttt gtgtattgga
     3901 aaaagatgcc aaagatacgc tagatttagc aatttcacgt tataatcttt ctttgcgatc
     3961 gcttaataaa attttaaaag tttcaagaag tatagcggat ttagaacaaa gtcttaatat
     4021 tagcaaaacc catattttag aagctttaag ctttagagca aggaattaaa atggaaaata
     4081 aaagtatagc tatctttata gatgcagaaa atatccctgc aaaatacgct aaaagtattt
     4141 ttgatatcgc ttcagattac ggagaggtta tcattaaacg catttatggg gattggactc
     4201 aaaaaaatat acaaggttgg agagagcaaa ttgctgaata ttctttaatc gctatgcaac
     4261 aatttaattt tgcagccaac aaaaactcaa gcgatatgta tttaatcact gaaatcatgt
     4321 ccatatttta tgaaaaaaat atagatattt ttgttattgt ttcaagcgat agtgattata
     4381 cttcactcat tcaaaaatta agagaaaata aaaaacaagt tataggaatg gggcttgaaa
     4441 agtctataaa atcttatgta aatgccttta gtgaattttt ttatttagat aaagatgaga
     4501 gtaaaaaaga agatatttta agtaaggatt atttaagagc tttaatcaat atcaccgaac
     4561 aacttatcga tgaaaaaggg cgtgccgaat acgcacaaat ccgtactaat atgaaccgca
     4621 aatactcgga ttttcatccg caaaattatg gttttaagaa ttttcgtgct ttgatccaga
     4681 aatttttacc caaaatgaaa aaatttgaag aagaaagaga aaaaaatata tattttttgg
     4741 tgaaaaaaga ttatgaaagc tattattgat aatataaaaa ttttagaaca aaatgctata
     4801 aataaaggct tagatgagct tattttaatg gaaaatgcgg gattaaattt agccaagcta
     4861 attaaaaaag aagctaaaaa aattcgcatt caacgcaaga ttagaaaagt aaaaatactt
     4921 tttttattag gcgggggtaa caacgcttca gatggcttgg tggctttaag aaatttaaaa
     4981 cacgctaaag cttataaaat aggctttaaa gaaaatacgc tttttaaaaa acaagagcaa
     5041 attttacaaa attatgcttt taaattttgt aaaaaagaac ccaattttaa aaaatttcat
     5101 attatcattg attgtatttt aggtacaggt tcaaatcgtt gtttagatga aaaaacaagt
     5161 ttaattattc aaaaagttaa tcaaagtaag gctttaaaaa tagcttgtga tatacctaca
     5221 aatttgggat tttatccttg ttttaaagct gatattacat tttgtatggg agctttaaag
     5281 gaaattttac ttgaagattt tgctaaggaa tttgtaggaa ggattaaaat agccaattta
     5341 ggcattagat ctaagaaatt ttaccctaat tctcaagctt ttttgcttga aaaaaaagat
     5401 ttaaaaacta tagatagaaa aatcaacgcc aataaaggaa attttggcca tatttatata
     5461 gttgccaatg caagtgctgg aactttagca ggacttggag ccttaaattt tggagcaggt
     5521 cttgtttctt tagtagcaca aaaaagtttc tcgcctcttt tgatgttaaa agaaaaaatt
     5581 gaaaataatg caagtgctat tgctttaggt atggggcttg aaaatttgga ttttctaaaa
     5641 gatgaaattt tgcaaaacac tcctttgatc ttggatgcaa actgcttttt aagtgaagct
     5701 ttgctttggt atttaaacag aaaagatgtt gttataaccc ctcatccaaa agaatttata
     5761 aaactttata aaatgtgctt tgatgagaat ttagatatag aaacattgca aaaaaatcgc
     5821 tttttctatg ctagaaaatt ttcacaaaat tatgattgtg ttcttgtttt aaaaggagca
     5881 aatcctatta ttgtgcaaaa agaaaaatta tttgttgtaa atttaggaaa tcaagcctta
     5941 gctaaaggtg ggagtggaga tgttttaagt ggaatgattg ctgcacattt aggttttggt
     6001 tttagtgctt tagaagcagc aaaaaatgct actttagctc atggacttgt tgcaaaaaaa
     6061 tataaattta ataaaaatag ctttgacgct ttaaaactta tcaaaggatt aaaatgcttg
     6121 taaaattagc tgtacttttt agtggaaatg gaagtaattt agaaaatatt ttagaaaaac
     6181 ttcataaaaa aaccataggg gaaaatacct atgaagtagt actttgcatt tgtaataaaa
     6241 aagatgcttt tggtgtacaa agagcaaaaa aatttggtct tgatactgtc attgttgatc
     6301 ataaggctta taatactcgt gaagaatttg atacgatttt ggtacaaaaa atcaaagaaa
     6361 gtggagcaaa tcttactgta ttagcaggtt ttatgagaat tttaagtcct gtttttacaa
     6421 aaaatattaa ggcaattaac cttcatcctt ctttattacc cctttttaaa ggagcacatg
     6481 cgattaaaga aagttatgaa agtgatatga aagtagctgg tgtgagtgtg cattgggtca
     6541 gtgaagaact tgatggtgga atgattatag ctcaaaaagc ttttgaaaaa agaaatttga
     6601 gttttgaaga atttgaagaa aaaattcata gtctagaaca tgaaatttta cccttaagtg
     6661 tgattgaaat tttttcttaa agaattaaag gtatttgctt taaaactata aaatatcgct
     6721 ttaaaaaatt ttaaaatttt caaggaaatt tatgtttgaa tggatattta gtattgatgc
     6781 ttggattact ttagctactt taagtgctct tgaaattgta ctagggatag ataatatcat
     6841 ttttttagct attttagtaa gcaaactacc ccctgaacat cgtgataaag gacgtatctt
     6901 aggtttaact tttgcaatga ttacaagaat tttacttctt ttatctcttt tttgggtaat
     6961 gaaacttgta acacctttgt ttagtgtatt gggcaatgaa atttcaggaa gagatctagt
     7021 tcttttacta ggtgggcttt tcttgattgt aaagtctatt aaagaaatta aagagcaaat
     7081 ttctcatcaa gaagaaagtc aaagtcattt taaagcaagc aataaacttt ggatagttgt
     7141 agctgaaatt gctgtgattg acatagtgtt ttcgcttgat agtgttatta ccgcagtagg
     7201 aattgctcaa gatgtaacca tcatgattat cgctgttatt atcgcagtag ctgtgatgct
     7261 ttttgcttct aaacctatag cagattttgt tgaaaaatat ccaagcatta aaattttagc
     7321 cttagctttt ttggtgctaa taggcgtagt tttagttgct gaaagttttg atattcatat
     7381 tgataaggca tatatttata ccgctatggc ttttgcttta gtggtgcaaa ttttaaatat
     7441 tttagatcaa agaaaggaaa aaaatggcta aagacgctaa tggaatagaa cttaacacag
     7501 gtgatagcgt gagtgtaata aaagatctta aggttaaagg tgcaagtaca actttaaaac
     7561 gtggaactac tataaaaaat attaagctca cttctaaaga aggtgaaatt gaggctagag
     7621 tagataaatt tggcgttatt gttttaaaaa ctgaattttt aaagaaaatc taggcaaaga
     7681 atgtgcgaat cttacttgtt ttaagaggga attattacgc aggacaagaa gaatttatca
     7741 aaaataataa acttcaaaat tatacacttg atttaaatgc tttgcgtctt ttatcaggaa
     7801 gcgttaaata tatagtcagt gaatataaaa ttttaaatgt taaaaatgat gaagatttga
     7861 gtaaaatttt actcaaactt ctagaaatgc gtatgcaaaa aggtgagttt tgcatcataa
     7921 acgcttacaa tgaaacatta aaaatttata aagacttagc taaacaatat cgctataaaa
     7981 tgtatgttat tgtttttgat agctctttaa aacaatgtca agaaaaaaat cttttagaag
     8041 ctaaaaaaaa tggatatatc atcccttatg ctcttttgga aaaaactcaa gatttactca
     8101 aaaaaaatcc aaaaaaatac ccaattttag actcgagcga ctggaaaaaa tgtctttacc
     8161 aaatgccaaa tttaagcaaa tacaaaaaaa ttcatcatat aggagattta caaggttgct
     8221 atagtgtttt aaaagaatac attaaaacaa tcaaagaaga tgaattttat atatttttgg
     8281 gagattatat caacagaggt atagaaaatg gcaaagtaat aaaatttctt ttaaaaattt
     8341 gcgaaaaaga aaatgtatgc ttattagaag gaaatcacga aagacatctt ataaaatggg
     8401 ctaatggaga attgtcaaat tccaaagaat ttaatgaaaa tactttaaag gattttagaa
     8461 aagaaaaact tactccaaga gatgctagaa aactctatcc tcatctaaaa gaatgtttat
     8521 actacaaatt ccaaaataaa ttcatatttt gttcacatgg aggagtaaat tttataccct
     8581 ccaaacctga aaaaataagt tttataccaa gccatgattt tatttatggt gtaggtggat
     8641 atgaagacag tcaaaaaata gcaaatcaat tttgtaattt cacctcggac aatctttatc
     8701 aaatctttgg acacagaaat aaagaaaaac ttcctatgaa aatagccaaa agagtatttt
     8761 tatgcgaggg taaaatagat gatggtggat atttacgcgt agttacacta gatgaaaaag
     8821 gttttgagtg tatagaaatt aaaaaccaaa tttacaaaaa gaaataagcc taaagaggct
     8881 tattcttcat ctttatttgt ttttttaacc accttaacac gctctataga attcccatcc
     8941 atttttttaa cttcatagta acaaagttca tcttcaatgc gatctcctac cataggcaag
     9001 cgtcctaaaa gattaaatac ataaccacct atagtaactt gttctaaatc ctcatcatag
     9061 tttattacaa gcatttcttc aacagtttct atgtcgcatc gtccttgaaa ttcatagata
     9121 ttttcagcaa gttttttata gctgtcttct tcatgctcgc ttttaatttc gccaataatt
     9181 tcttccatga tatcttccat ggttaaaatt ccagcagttc caccatactc atcaactact
     9241 aatgcagtat gagagcgttc tttattcatc attacaagta cttttgaaat gctgatattt
     9301 tcaggaacta aaatcaaagg tttaacaaaa gtatctaaat tttgactttt atggcttaat
     9361 tcattttgta ttatatctcg tatgtgtatc atccctaaaa tagtatcttt agaaccgtca
     9421 atataaggaa agcgagtatg tttatgttca caaatgattt gcatattttc ttcgtaactt
     9481 ttttgtttat ttagacaaat catatctttt ctaggagtca taatctcttt agcaacagta
     9541 tctgaaaaat caacagcatt gcgtatgatc tctgtttcaa attcatctaa aactccacct
     9601 ttttgactct cacttgctat gattttaatt tcttcttcgc tatgagttag ctcgctttct
     9661 ttagcaggtt ttattccaaa aagtttcaaa cttatagctg ctaaaaaatc gaaaatttta
     9721 atacaaggca aaaagagtat ccaaaaccaa tgaagaggtc tagctataaa taaaaccgct
     9781 ttatctgcaa ctgcaatagc tatacttttt ggcacaagtt ctcctaaaac cacatgtaaa
     9841 agagtaataa tactaaaagc aataatgaaa gccatagtat ggataataac agtgctaaaa
     9901 ccaagattaa taagcggaat ttctagcatt tttgcaatag caggctcacc tatccaacca
     9961 agagctagag aacttaaagt gattcctaat tgacaagcac taagataagt atcaagtctt
    10021 gaagtaacct ccaaagcttt cttggcacca gctttttttt cttttaccat ctcttcaagc
    10081 ttggaacgac gtactttaac aatactaaat tcagataaaa caaaaaaacc atttaaaaac
    10141 actagagcaa gtgcaacaac aaccataagt atagaatatc ctgcatcaaa agatgctgta
    10201 gaagtttggt ttaaatccaa aacctgactg gggtccaatg aagctcctta agaaataaaa
    10261 tattattaaa ccttattata cacaattaaa agtaaattta atatttgaat ttttttcttg
    10321 tattttataa gaaaaaacta agacttataa gaaatatttt tctcaaattc ttttaaacgc
    10381 ttatatatac ttctaagttg agtgatagtt gtccagtttg tgataaaaat actaaaagag
    10441 cttcgcactt gatcaaatgc attattaatc tgcattacaa taccaagtcc tatagctcca
    10501 gcaaaaagcc ctggtgccat gattaaaaat ggcactataa ctatcatttg ctcaaataaa
    10561 atgagccaaa tattaaaata tccataatgt aaaaaaagtc ttttatagtt aaatttaagc
    10621 cctgtaaaaa gctctatcat agtctcattt ttagcgtatt ctttgcgatt atcctcagca
    10681 taaacaagct cttttctaaa agctgcttca gctttttgat tgttatattc aagtccagga
    10741 agcttaatac ctacaaacca tgacacaacc aagcctccta aagaaatcaa aagtgcaata
    10801 taaacaagca aaccatcaat gttttttaaa aaataaaaag aagaattttc gcttaaattt
    10861 gcaaataaag ctttactcac aacatcactt aaactccata aaatcggaat aaatgctaca
    10921 agggtcatca aagcttttat aaaactaagt cctaaactct ctacgatttt agaaaaatta
    10981 taagtatctt cttgaattct ttgcgaactt ccttctatat tatcatcttt atttttccaa
    11041 aattttaaat aagaaaaagt catagcctca cgccacttaa aagcatagac gctagcaaaa
    11101 tagatattaa ttgtagcgat taaaacataa ggaatagcaa tagccaaaaa aactaaaatc
    11161 aaagcataaa aatcacttgc tgaataattt ggcttttcaa tcatagccct agagttgaaa
    11221 aaatattcta ataaattttg ataataatac aatgcgcctt tattgataaa attagctttt
    11281 tggaaatttt gctcagctct ttgattagcc tcttggatta aagtggcatt attttcaaga
    11341 ttttcttcta ttttttgcgt agaattagaa tccaaaagtt ctatttttgg cttttgtaaa
    11401 acattgtaaa aatcactata ccatgaattg atcgcaacat ttaagcttgt ttgtatatat
    11461 aagaaaaata acagtaaaaa aagtcccaaa taagcccata aagcccattt tttactttta
    11521 aaaaacgaag agaacataat catcaccttt aaaataaaaa ttctaataaa ctttttttaa
    11581 tgaaaagttt attttttacc taaatagtct ttaatattgt aatcaatagg cataacaaaa
    11641 ctgattttat caccattttt taacatttct ttaggcggtt ttggcaatgg agaagctctt
    11701 ttaaataaac ttaaagcttc atcattgagc gctgcataag ggcaagattt tttaagctct
    11761 ttgcttaaga catttccgct ttcatcaatg cttacgcgaa ttcttacaac gccttcttgt
    11821 ttttgcatta tcgcttcttg aggatatttt ttaaatttag tcaaatgagc cataagcaaa
    11881 gcttgatagc ttttaacttg ttctttggca ttgccactta ctatagtttg tgttttatct
    11941 tcattacttt gtagcggagc actgagcgat tcatttttaa attttgaatt ttcacttgca
    12001 ttagctattt ctttttgagc ttggttttca tcttgctttt caatcttttt ttgaactttt
    12061 aatacagcat ttttatcttg agaattaaga cttattcttt cgtcttgttt tttgttttta
    12121 tcttgagaat tactcttttt ttgatcaatc gaaacttctt ttaattcccc gataggaagc
    12181 tctgatacca tcataatgga agtaaattcc gctccttgtt taaaatcaac accacttgat
    12241 ttttcttgag tataaaaaga aaaaaggaaa aacattaata ctaaagtatg caatatcaaa
    12301 cttaacacaa acccaaaaat cacactagac ttcatactaa tccatctttt tacttgaaag
    12361 agctattttt ccatagccat tctcttttaa tttttgcatt acttgcataa tatcttcata
    12421 ctttacactt ttatcgatat gaaaataaat aatttcttct ttattgcctt tggtttttat
    12481 atctaaagca cttgaaagat tttctaggct taatttatca tcattaatag ccaaagtatt
    12541 atcagtattt aaataaagta tgatgggatt tttaagctta tcctctgctt gctgcgaact
    12601 cttgggtaat tctattttga tagaacttgt gataagagga gtaacagcca taaaaacaat
    12661 caataataca agcataatat ctataaaagg agttatattg atctcactta actcctcttc
    12721 tttgtgagcc atttcagttt ttatcattaa aataactcct atgaaaaagt atatagacaa
    12781 aatttgcaag ctcatctaaa tggtgcataa gttttaaatt ttttcttgta agataattat
    12841 aaaaaagcac cgcagggata gcagctatca agccaaaagc tgtagcaaac aaggcttcag
    12901 ctataccagg cgcaacgact gctaaagaag tattgccaag atttgctata cctataaatg
    12961 cattcataat tccccaaact gttccaaaaa gccctataaa aggtgcgcta gcacctatac
    13021 tcgcaagcaa gctcaagcca tttttgcttg ctgtgatttg ctttgagatg gtattttgca
    13081 aacgcaattc tatacgctct tttatgtgat catttttata ttcacttttt tcaagctcat
    13141 cttgaatttc taaagataaa acacctgcaa aatcttttgt ctgatctaat tcattgagat
    13201 tttttaattc ttttatcttt tgtatagaca agtctagatt ttttttcata aaataaaatt
    13261 gcataagctt agaaataaaa accgcccatg ctaaaatgga aaataaaacc aatatataaa
    13321 taacaccttt taccacctca tcagcatttt gataaagact agaaagagaa agctctattt
    13381 taggtgcttc ggtttctatc ttagaagaat caaaagataa atttgtatct gttgcattta
    13441 cttcagcatt taaatttaac aataaaaaac aaaataaaaa catttttttt aacatttgta
    13501 tattccttaa tatttatatt caaaacttac tataaaagta cgaccgcgag cagaattgct
    13561 aaaaagatag ataggatcac ctgctccatt atattgaagc tgattatcta aggaattata
    13621 agcatttaag gcatccatgt agtttttatc aaataaattt tgcacctctg ctctcattgt
    13681 gaggttttta aaccattcta tattccaata taaatctact ataataggaa tttttggtaa
    13741 gtcttgtgtg gttggtttag gataataagg attgtttgga tccttattcc aatcatctgt
    13801 atttggattt accctttttg ctttgcctgt gtattttgct ataccaccaa agcttatttt
    13861 gtcatttagc ctaaagccaa gctctacatt tacataatct tttggaagct ccatgatttt
    13921 acttgccgaa aaagagccaa gaagaggtcc tgaagtttga gaaatagtcg aacttgtatc
    13981 ttgtcttgaa tacatagctt tagcataagc aaaacccaag tcatagctta attctaactc
    14041 cacaccctta aatatggtat catcagctga atttaagtgc atataaaatt gcgagcttgg
    14101 aggaacttta cttggatctt caagataaaa ttgttcatta taaatataat cttttatttt
    14161 tgtatgataa tacacggctt taaaaccaaa gcgatcatca tcttttaaaa gtccatgttt
    14221 aaaagaatta aaacctattt gccaagtatt ggcttgttct ggttttaaga aaggattgat
    14281 accattgcct tcgttatttg agaaaaacat ttcttgcaca ttaggggctc tatttgttct
    14341 cgcaaaactt acaaagggtg taaaaagctc gtgtatggca gctgaaagca tgacagaagc
    14401 attcaggcga agtccatttt tatctatatc tgtcgccgct tttggaaaac acataaaatt
    14461 tacttcatcg caagcaggtc tgtgtccttt gatattccaa tctaaaagat tcacattagt
    14521 atcaagtgta aagataccat aatttagact attatcaaga taataagtaa aaagattttg
    14581 ttttccacga ggctgaaaag gtatagaatt tactccttga attgatgtat ttaaggtatt
    14641 tttataatca ttaagcaaaa tatttgctcc aaagcgtgtg tttagattaa atccatgcca
    14701 ttcaccctct aaagtatcac ttatatcaaa agtagtggca gtattttttg cctttgtgtt
    14761 agctatggca tcgtttgccg caaaagtaga ttttgatcca taggtttgta tgccttgatt
    14821 gtaggcaata agcgtattta cattaagcca ctcattaggg ttgtgccaaa aatcaagttg
    14881 ataattgtca ttgtgtattt ttctaccggc aagttcgttt tgatatctac gataagaaaa
    14941 tatagtgttt gtaaaagaat ttgggacata ttcgagttta aaaagttgag agtttggttt
    15001 ttgggttaaa aaatctggat caaaaggagc gatattggta tcagctatac catctccatc
    15061 agtatcaacc atactactac ctatcttgcc acccccgcct acagtgtaat tttgagtaat
    15121 tctctttgcg ctataaccaa aaagcgcgcc cacatatcca ttattttcaa gttcagtctt
    15181 tccagccact gcactcatat aacttggtcc gattccattg cttccataag aaaatcgtcc
    15241 taaaaatcca aagatattgc catcatgtac aatatcattt atacctatgg tcttaaaatt
    15301 tgctgatccc atcaaggcat ttgctccacc tactccttca aaagttcccc ttgtaacatc
    15361 aactccgatt aagaaatttg tatcaataac agctccaaaa gctgaagttc ccgtttgtga
    15421 atgaaatcta gctggatcat ctgatgcact accataaaaa gtttgagtaa caccgtcaat
    15481 catggtatta acacgcccaa aaccactcat accacgaata tttacttgaa ctgtaccttg
    15541 agcttgatct gtgtttgtgt aggttccagg tatactacgc actatagaat ctatactttg
    15601 tgtatctgaa cctataccct ctcttgtgct tgttgctcca ggagttacaa aaggtttttc
    15661 atcgtttttg atttttgaac ctgaaatttc aagactatca aattctaatt cttcagaaaa
    15721 agcaaaacta gcaaaacata aacctacagc acaaaataaa cttaattttt tcattcctcc
    15781 cccttataaa tcaaaacata atcactgtct tttaaatcta tttctccata gcttaaattc
    15841 actacaacta tttttttact gcttttaaaa tcttgtatat gtaaaggaat tcctattttt
    15901 ttacttgtat gatagcttcc agctagcaat aaaactttat ttacatgatg aaccaataca
    15961 tcagccatac gcctgtcttt gaattgttga atttccacca atttatctag taattcttta
    16021 ttttcttcag gatttagctt atggcttaag gatataatgt caaaaagttg tttttttact
    16081 tcatttgtgg ttgaaacata accctttaag ggctgagccc cattataaat acttgtaatt
    16141 tctgagcgtg aaagatttgc acctaatatt tttgactttg aataaaaaac cacattgaca
    16201 aattgctcat aatctttcca tttccagacc ttatcccaat ttaatgcatt agtaagttca
    16261 ttggctttaa tggttttttt atttttaaaa gctttatcta agtgattttg ctctgtgctt
    16321 gctaacattt ctaaagctac atcaaagttt atattttgag aacttaaatt tccttctaag
    16381 gcattaaaaa tcataacttg acttatctta tgtttaacct catcgtgttt ttcgccaagc
    16441 agtatcacat ctgcttttag caattctaaa atcatatctt caaaagaaat ctttttttga
    16501 gtatgcgtat caagtatata aaaatcttta ttttcttgaa gtggagatga tttttgcaaa
    16561 acagcacaag cgctcaacat aaagcttata aatagaatgc ttaaaatagt ataaaatttc
    16621 attattattg t
//
LOCUS       DBBXPZ010000035        16528 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.037, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000035 DBBXPZ010000000
VERSION     DBBXPZ010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16528
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.037"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            90..1154
                     /gene="mqnE"
                     /locus_tag="ACJFD7_000927"
     CDS             90..1154
                     /gene="mqnE"
                     /locus_tag="ACJFD7_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HGG0859750.1"
                     /translation="MKNLITKLENEERLNQEEANALWDLDLFTLGKYAHKKRTKLHGK
                     KVYFNINRHINPTNICADTCKFCAFSAHRKNPNPYLMTHEEIMKIVDETVKRETKEVH
                     IVSAHNKDTTWQWYLEIFKMIKEKYPNLHVKAMTAAEIDFLHRRFKMSYEEVIEKMLE
                     YGVDSMPGGGAEIFDEEVRKKICHGKVSSENWLKIHKLWHEKSKQSNATMLFGHIEER
                     HHRIDHMLRLRDLQDQTGGFNAFIPLVWQRDKSFIQTDKIMDSEEILKTIAISRLVLD
                     NIKNIKAYWATMTLNLAMVAQEFGANDLDGTIEKESIQSAGGAKSAKGTSLKTFIDMI
                     KTSNLIPVERDSLYNELKTY"
     gene            1164..2483
                     /locus_tag="ACJFD7_000928"
     CDS             1164..2483
                     /locus_tag="ACJFD7_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HGG0859751.1"
                     /translation="MSFFKLKENNTSFKTEVIAGLTTFLAMVYIIPVNSSIVGNTGMP
                     IEALITATALITIVASAFNAFFANTPVAMSVGMGLNAYFTFAVCLGQNIAWQSALGAV
                     FISSIIFLILSFTHFRLWVIRNIPKDLRLAICAGIGCFIAFLGLSQMGVIMHNKDTLV
                     SIGNFKSPHVLFGIFTLALIIFFWAIKLRGAFILGVLASSIIAWIFHLDNASFPVQIF
                     SWPNFSMENGLGAIFLQLNIKSALNITMIPIILTFFITQLFDSIGTITGVGERGKIFD
                     DPKNGEKKLSKTLMADATGSALGAMTGTSTVTAFVESTTGVESGGRTGLTALVVAICF
                     AFTLFLLPLFKAIPANAIYPVLVMVGILMFMEVKNIDFKDSAIAVASFFTIIMMPFTY
                     SITTGFAFGFLSYLLVRIFKREWDKINLGIIVLSLLSLGNFLLMALQ"
     gene            2497..2940
                     /locus_tag="ACJFD7_000929"
     CDS             2497..2940
                     /locus_tag="ACJFD7_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HGG0859752.1"
                     /translation="MIFYSYEEFKEDVKILAKEIKKDFNPDALLAIARGGMSLGHSLA
                     VALKTRQLFALNSIHYDNTKKLNTIEIFNIPDLSKHKKILLIDDIVDSGESLAEIKKV
                     LLEKFPHIELKITTIFYKKTALLEPDFKVKEATEWVDFYWDINLD"
     gene            2985..3683
                     /locus_tag="ACJFD7_000930"
     CDS             2985..3683
                     /locus_tag="ACJFD7_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HGG0859753.1"
                     /translation="MRIKFISFILIFFAIFAFAKEQNLDDFEQEYQNYQVNDPLSGYN
                     KAMTSFNVALYDYGLRPVLKGYNTITPEFIRLGVRNFFDNLLAPLRFVGNILQFKFEE
                     AGEEFKRFTANTIMGFGGLMDVASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPS
                     NLRDTLALPATWYASFTAYIDPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPF
                     LRDAYEQRRNELSK"
     gene            3693..4262
                     /locus_tag="ACJFD7_000931"
     CDS             3693..4262
                     /locus_tag="ACJFD7_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HGG0859754.1"
                     /translation="MKKIFLILTLFFNAFALQLDEISSTMQKNIDASLKLLQDNKEDK
                     KQAANGIFKLFDSIIDYKLMAKLSLSKNYSKLTPKEQEKFTTAFETSLKKSFTDKLSL
                     YKDQVLKVKNGELKNEKRYFLTTSMVVDGEEKNIIFKFYNDNNNWLIYDVDVLGVSIV
                     QTYRSQFGDILANQGFDALLQKLESIVIE"
     gene            4262..6733
                     /locus_tag="ACJFD7_000932"
     CDS             4262..6733
                     /locus_tag="ACJFD7_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RND family transporter"
                     /protein_id="HGG0859755.1"
                     /translation="MFAKLLKFFISRPKSTFFGTLFICLFLSFFAFKLSVDASAESLL
                     LEDDADLKTFREISKHYKSDNFLLLAFKPYDEKPFSNENLAKLKKLHEELEKAPLVER
                     VFSIINAPLLQSSQNTDLKELLKNIPNIESQDINRTKAQNEILNSPFYKNNIISKDGK
                     VTGLIIYLKPDTVYNNLIEKRDLATDEKEKDQIRLAIKEHQDKQKVITKQSLDTIKSI
                     VRNYEKNKDTLYLGGVSMIADDMIAYIKSDLVLYGVSLVFLLGLALYYFFRSWRFVFL
                     PLFICFISLSAASGVFALLNFQITVISSNYVALVLIITLSVVVHLITHFIESTQNHPK
                     AKVERIVLETLLAKANPSLYAIVTTMIGFFSLILSNIEPIIKLGIMMSIGIGLALIFS
                     YLFLASILVLLKPKNYHKKEFKFNLLAFCAKTALDPKKRRMIYEISVLAIILALIGIS
                     KLRVENSFVNYFKDGSEIKKGLLVIDKNLGGTLPLEVIIRFPNNKNDQNASDTLDSFE
                     SEFENLATQETYWFDSKKTRIAKKVHEFLENKEFVGSVLSLNSLLTLGKNINDGKELD
                     DFALAFLNENLPAKFKQDLLSPFVSIENNELRFSMRIVDSDPNLRRNEFLIDLKKQLN
                     ELVKNDGVEVQITGIMVLYNNMLQSLFSSQFDTLIFVILAIFILFIIVFRDLKFSVAA
                     ILVNVIPLSVVFALMGLLGIPLDMMSITIAAIAIGIGVDDAIHYIYRFREEIKNKSLE
                     EAIMISHLSIGSALYYTTISIVLGFSVMMSSNFIPTIYFGILTVFVMILLLSGSLFLL
                     PSFLITIYSKKTKFPNQHKEHILKQ"
     gene            complement(6764..7366)
                     /gene="rdgB"
                     /locus_tag="ACJFD7_000933"
     CDS             complement(6764..7366)
                     /gene="rdgB"
                     /locus_tag="ACJFD7_000933"
                     /EC_number="3.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035870 - dITP diphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0036222 - XTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HGG0859756.1"
                     /translation="MKIILATSNKHKVLELKEILKDFEIYAFDEVLMPFEIEENGKTF
                     KENALIKARAVFNALDEKQKKDFIALSDDSGICVDVLEGNPGIYSARFSGKGDDKSNR
                     DKLVNEMIKKGFKQSKAYYVAAIAMVGLMGEFSTHGTMHGKVIDTEKGENGFGYDSLF
                     IPKGFDKTLAQLSVDEKNNISHRFKALELAKIILKILNKG"
     gene            7533..8834
                     /locus_tag="ACJFD7_000934"
     CDS             7533..8834
                     /locus_tag="ACJFD7_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0859757.1"
                     /translation="MLNNVLPLSFIVGTRFFGLFIVLPVLSLYALKLEGANEFLVGLL
                     VGVYALAQMILQVPFGILSDKIGRKKTMLIGLIIFIIGSLICSFAENIYTMLLGRMLQ
                     GAGAIGAVATAMISDFITEENRGKAMAVMGSFIGLSFAASMVISPLMSAKWGLSSLFD
                     LSAALSLLCIILLYTIVPKENKITHENEKTPFFHLIKQKNLALMNLTNFMQKMLMSIA
                     FLSIPIILVKHLGFASDKLWIVYSASMVAGFIAMGFAGSLGEKRGLAKQILLLGIVFF
                     ILSYLFFAFSNSIDFFIIAVVIFFIGFNLHEPIMQSCASKFCKVHEKGAALGLFNAFG
                     YGGSFIGGIIGGIFLHLDALNLLAIILVILALIWLVALFFLKNPADFKNLYLPLETPL
                     NFSTFSENLGVVDIYKNSKNLVVKFDSKLTNKEELEGKIKI"
     gene            complement(8831..10504)
                     /locus_tag="ACJFD7_000935"
     CDS             complement(8831..10504)
                     /locus_tag="ACJFD7_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HGG0859758.1"
                     /translation="MQDFVYIKNDVLIPLPDAIEILDQANDKEALICNDKNQKAQIYA
                     PEINFYLKNSQDEILDQSKNVLTLYKARASVYDLGLDLEQSKEVQNRLILVDSDTQTV
                     EFLKEHGFKVIALSSAEILAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAEDLSVVRK
                     DFTRQSGCYNLLNFENLEVLLEFLQSKSPKYPYKTYISYNASVCQYHERRSEHCAKCA
                     EICPTVAILKDDEKKHLEFSQVDCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKD
                     KKILIIPKKMSLENLNLALPKDVLPFMIEGEKWLSSMHFLTLLQNSGANLVFYTDFVS
                     RGSNEAIMLLNTFFERKFQKKAIFVAKDEKELQNVLKEQEFIQDLKYDFHNNTLTTRE
                     NFAKRMQEMIKNEDFGSIESGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADKQEN
                     ALKFNASLCTTCGYCELSCAEKDTLKLFRSGMEFRASYFEYQTMAKDGLFSCIECGKE
                     FATKKAVEKIANLMKPKFGNDENKIKTLYCCADCKAKVMIKAMGFAGQN"
     gene            10582..11904
                     /gene="selA"
                     /locus_tag="ACJFD7_000936"
     CDS             10582..11904
                     /gene="selA"
                     /locus_tag="ACJFD7_000936"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004125 - L-seryl-tRNA(Sec) selenium
                     transferase activity [Evidence IEA];
                     GO_process: GO:0001514 - selenocysteine incorporation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HGG0859759.1"
                     /translation="MNKFRTFPQINTLIEDESLKSYPFYIKAFFCKKVVAKLKENFSQ
                     DEISKDKLLLEIKKEIKTFYRKDLQSVINASGVVIHTNLGRSVIHEELYEACKDIICN
                     YSNVEFDLENGKRGSRYALVLEKLKMLFECEDALVVNNNAAAVFLVLNSLCYDKEVIS
                     SRGELVEIGGSFRVPEVIKAAGVKLCEVGTSNKTHLKDYEQAISENTALILKTHKSNF
                     ALMGFHSEVNIKDLHELAKEKGLLSYYDLGSGWCENLNEKLIKNEPKIKKLVQECDIL
                     SFSGDKLFGSVQAGIILGKKELIEKLKQNQLLRMLRVDKLTLSFLNESLKAYLQKDYE
                     KIITLKLLNDDLSFIEEKALRVQKKLKFQTQLKKSKSLVGGGSMPDKSLDTYILTFQG
                     DALKLQTRFRKENIIGRIENDEFVLDFRTIRENELQKLILTINQMENL"
     gene            11901..13706
                     /gene="selB"
                     /locus_tag="ACJFD7_000937"
     CDS             11901..13706
                     /gene="selB"
                     /locus_tag="ACJFD7_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0001514 - selenocysteine incorporation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HGG0859760.1"
                     /translation="MKSVIIGTAGHIDHGKTSLIKALNGFEGDSLKEEQERQITINLS
                     FSNLKLKDKNISFIDVPGHKDLVKTMVSGAFGFSVCLFVVDINEGLKEQSLEHLEILK
                     ILDIKNIILVLSKCDLCENIEQKSVEILEELKNLDYPILKVFHTSIKNNQGIEELKNY
                     LYTIENKENDEELIFHYYIDRVFSLKGIGTVVTGSLNEGSITLNEKIICLDTQKELIV
                     KNIQNHDTNLEQIKACNRVALSLNCDYKELKKGYLLSKKGYFKAFKECDALVKAKNLQ
                     NSKMIFCVGSRQIECKINILKKLENDEFFVHFSFDKNVFLSFDEAFILLQNNRVIGGG
                     KVLNPLSEPLKKEQKNKFLMFLKNKDFKAAFSFLKDAHKYGFGLLSSYQRFKLSHQKA
                     LKLVKELNQVFVDEKNLNVYHLQSLEEIKNFIKFILEKNPYAMLSAHSLALRITWASE
                     NFCELGLKEMSNLLDFQNGIYFKKGIDFEKLQEKNNNQMYEILKKQGIKPEAPYNLYD
                     FLELDRKSGDNILKKLTQKGLVVRLSHNLFIEKQALEKLMQECLNLLKNQSLDVQSMK
                     EYFNLSRKYAIAYLEYLDKFPQVSKEAEKRFLTNI"
     gene            13755..14465
                     /locus_tag="ACJFD7_000938"
     CDS             13755..14465
                     /locus_tag="ACJFD7_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin fold domain-containing protein"
                     /protein_id="HGG0859761.1"
                     /translation="MKKLSLILACSASLFAASNSEISDFYSKSIKAQFPNTTVSVSNR
                     QKVGNTGFESVIVSVELNGQKQENILFTKDSLITPDLIDLKTGISYAQEYEMKKFQEA
                     RENFTKNAKAVAQKETMVIALGDKNKPAIYVFSDPECPYCREHLAQIDNELKNYQVNY
                     ILTPVHGKSAFEKSALIYKEAKKAKNDKEKIAILNKYYDANIKNYPKVSDAELKEVFS
                     LYEKYRSLGLSATPTIIK"
     gene            14471..15001
                     /locus_tag="ACJFD7_000939"
     CDS             14471..15001
                     /locus_tag="ACJFD7_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859762.1"
                     /translation="MSKITLILSFFITLFMSACTNATFTQSFIQTSNEGIFIRSQKQQ
                     SFKISFQNPSQLQTTLDRDLALKLKNLGLKEVKENADYEILINLVDMKKHSYAQKITT
                     SARFFYDFDPLESDGEWMVENYYTMQVNLQINSKNHNSQKTSLLARTAYLGNKERCQL
                     SLENKIINQIVSFFYF"
     gene            complement(15047..15538)
                     /gene="fldA"
                     /locus_tag="ACJFD7_000940"
     CDS             complement(15047..15538)
                     /gene="fldA"
                     /locus_tag="ACJFD7_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HGG0859763.1"
                     /translation="MSVAVIYGSAMGNTEGAANTIALKLGISDVFNISDIDAAKINSY
                     DKLICGTSTWGSGDLQDDWDGFDFSGLSLGGKTVAVFGMGDSESYSDTFCGGMGKLAQ
                     NLKDAGANLVGEVSTDGYTFEASDAVVDGKFVGLALDNDNQEDQTESRIDAWIEQIKP
                     YFA"
     gene            complement(15538..16223)
                     /locus_tag="ACJFD7_000941"
                     /pseudo
     CDS             complement(15538..16223)
                     /locus_tag="ACJFD7_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344771.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(16226..>16528)
                     /locus_tag="ACJFD7_000942"
     CDS             complement(16226..>16528)
                     /locus_tag="ACJFD7_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2325 domain-containing protein"
                     /protein_id="HGG0859764.1"
                     /translation="VIGADEITPIRAVLHDLGAKKIEHWDARNENRVNRKPIPCDTEC
                     IVMLTSFLNHNTMKKIKNEAKKRKIPLVCAKRSVSCVYCEYCKIFNLNKEFSCYKG"
BASE COUNT         5907 a         2487 c         2429 g         5705 t
ORIGIN      
        1 tcttttattt tggctttttc tataaactct ttttcagtaa gcaaaaatta taatgcttta
       61 tttaaaaaca gcaaaagagt aaaattaaaa tgaaaaattt aatcaccaaa ctagaaaatg
      121 aagaaagatt aaaccaagaa gaagccaatg cactttggga tctagatctt tttaccttag
      181 gcaaatacgc tcacaaaaaa cgcactaaac ttcatggaaa aaaagtctat tttaatatca
      241 atcgccatat caacccaact aatatctgtg cagatacctg taaattttgc gccttttcag
      301 cgcaccgaaa aaatcctaat ccttatttga tgactcatga agaaatcatg aaaatcgtcg
      361 atgaaaccgt aaaacgagaa accaaagaag tgcatatcgt ttcagctcac aacaaagata
      421 caacttggca atggtattta gaaattttta aaatgataaa agaaaaatat cctaatcttc
      481 atgtaaaagc tatgactgct gctgaaattg attttttaca tcgtcgtttt aaaatgagtt
      541 atgaagaagt gatagaaaaa atgcttgaat acggcgttga ttccatgcca ggtggtggag
      601 ctgaaatttt tgatgaagaa gtgcgtaaga aaatttgtca tggaaaagtt agcagtgaaa
      661 attggcttaa aattcataaa ctttggcatg aaaaaagcaa gcaaagtaat gctaccatgc
      721 tttttggaca tatagaagaa agacatcaca ggatcgatca tatgttaaga ctgcgtgatc
      781 ttcaagatca aaccggtgga ttcaatgctt ttatcccttt agtttggcaa agggataaaa
      841 gctttataca aactgataaa atcatggata gtgaagaaat tttaaaaacc attgccattt
      901 ctcgtttagt gcttgataat atcaaaaata tcaaagctta ctgggcaaca atgactttaa
      961 atttagccat ggtagcacaa gaatttggag ctaatgattt agacggcact atagaaaaag
     1021 aaagtataca aagtgcaggt ggtgcaaagt ccgccaaagg cacaagttta aaaactttta
     1081 tcgatatgat aaaaacttca aatcttattc ctgtagaacg cgatagttta tacaacgagc
     1141 taaaaaccta ctaaggagaa aaaatgagct tttttaaact caaagaaaac aatacgagtt
     1201 ttaaaaccga agttatagca ggacttacta cttttttagc tatggtttac attatccccg
     1261 taaattctag catagtagga aatacaggaa tgcctataga agctttaatc accgcaacag
     1321 ctttaattac catagttgca agtgctttta atgctttttt tgccaatact cctgtagcta
     1381 tgagtgtagg aatgggttta aatgcttatt ttacctttgc ggtttgttta ggtcaaaaca
     1441 tagcttggca aagcgcctta ggagctgttt ttatttcaag tattattttt ctcatacttt
     1501 cttttacgca ttttcgcctt tgggtaatcc gcaatatccc aaaagattta cgccttgcaa
     1561 tttgtgcggg cataggttgt tttattgcat ttttaggctt aagtcaaatg ggtgtgataa
     1621 tgcataataa agatacctta gtcagcatag gaaatttcaa aagccctcat gtgctttttg
     1681 gaattttcac tctagcttta atcatctttt tttgggctat aaaacttcgc ggagctttta
     1741 ttttgggggt attagcaagc tctattattg cttggatttt ccatttagac aatgcaagtt
     1801 ttcctgtgca aatcttttct tggccaaatt ttagcatgga aaatggttta ggagccatct
     1861 ttttacaact taatatcaaa agcgccttaa atattactat gatacctata attcttactt
     1921 tttttatcac tcaacttttt gatagcatag gaactatcac aggtgtgggt gaaagaggaa
     1981 agatttttga tgatcccaaa aatggagaaa aaaaactaag caaaacctta atggcagatg
     2041 caacaggatc agccttagga gctatgacag gcacttctac agttacagcc tttgttgaaa
     2101 gcactacagg ggttgaaagc ggaggaagaa ctgggcttac agctttagtt gtagctattt
     2161 gttttgcttt tacacttttt ttactgccac tttttaaagc cattcctgca aacgcaatat
     2221 accccgtact tgtaatggtt ggaattttaa tgtttatgga agttaaaaat atagatttta
     2281 aagatagtgc tatagctgta gcaagctttt ttactattat catgatgcct tttacttact
     2341 ccatcaccac aggttttgct tttggttttc tttcttattt acttgtaaga atttttaaac
     2401 gcgaatggga taaaatcaat cttggcatta tagttttaag tttattatct ttgggtaatt
     2461 ttttacttat ggcactacaa taaataagga tatataatga tattttactc ctatgaagaa
     2521 tttaaagaag atgtaaaaat tcttgctaaa gaaattaaaa aagattttaa ccctgatgca
     2581 cttttagcta tagcaagagg ggggatgagt ttaggacact ctttagcagt ggctttaaaa
     2641 acgcgtcaac tttttgcttt aaactcaatt cattacgata atacgaaaaa acttaatact
     2701 attgaaattt ttaacattcc tgatttaagc aagcacaaaa aaattctact cattgatgat
     2761 atagtagata gtggagaaag tttagcagaa ataaaaaaag ttttgcttga aaaatttcct
     2821 catatagaac ttaaaattac aaccattttt tacaaaaaaa ccgctctttt agagcctgat
     2881 tttaaagtaa aagaagctac tgaatgggtg gatttttact gggatataaa ccttgattaa
     2941 aaatttgcta taattttact tttaaaattt ttaggagttt ttgcttgaga ataaaattta
     3001 tatcttttat tttaattttt tttgctattt ttgcttttgc taaagaacaa aatttagatg
     3061 atttcgaaca agaataccaa aactatcaag taaacgatcc actttcagga tataacaaag
     3121 ctatgacaag ttttaatgtg gctttgtatg attatggttt gcgtcccgtt cttaagggct
     3181 ataacactat cactcctgaa tttataagat taggggtaag aaatttcttt gataatttac
     3241 ttgctccttt gcgttttgta ggcaatattt tgcagtttaa atttgaagaa gcgggagaag
     3301 aatttaaaag atttaccgcc aataccatta tgggctttgg tggacttatg gatgtggcat
     3361 caaaaatggg tcttaaaaaa catcccgcgg acttaggaac cgttttggct cactggggtg
     3421 taggaagcgg ttttcatatt gtcttaccta tacttggtcc tagcaatctt agagatactc
     3481 ttgctttacc tgcaacttgg tatgcaagtt ttaccgctta cattgatcct acttgggcaa
     3541 gtatagctat aagtgcttat ggatttggta atgaacttag ttttaggctt gatgaaattg
     3601 atgaaattta tcacaacacg cctaatttat atccattctt gcgtgatgct tacgagcaaa
     3661 gacgcaatga acttagcaaa taaaggaaat taatgaaaaa aatattttta atcttgactt
     3721 tattttttaa tgcttttgcc ttacaactag atgaaatttc tagcactatg caaaaaaaca
     3781 ttgatgcaag cttaaaactt ttacaagata acaaagaaga caaaaaacaa gctgctaatg
     3841 gaatttttaa actttttgat agcataatag attataaact catggcgaaa ctcagtcttt
     3901 cgaaaaatta ttctaaatta accccaaaag aacaagaaaa atttaccaca gcctttgaaa
     3961 caagtcttaa aaaaagtttt accgataaac tcagtcttta taaagatcag gttttaaagg
     4021 tcaaaaatgg tgagttaaaa aatgaaaaac gctatttttt aaccacttct atggtagtag
     4081 atggggaaga aaaaaatatc attttcaaat tttacaatga taataacaac tggcttattt
     4141 atgatgtaga tgttttaggt gtgagtatag tacaaactta tagatcacaa tttggagata
     4201 ttttagccaa ccaaggcttt gatgccctac ttcaaaaact tgaaagtatt gtcatagaat
     4261 aatgtttgca aagcttttaa agttttttat ttctcgtcca aaaagtactt tttttggaac
     4321 gttgtttata tgcctgtttt taagcttttt tgcttttaag cttagcgtag atgcaagtgc
     4381 tgaaagttta cttttagaag atgatgcaga tttaaaaact tttagagaaa tttcaaaaca
     4441 ttataaaagt gataattttt tacttttagc cttcaaaccc tatgatgaaa aacctttttc
     4501 aaatgaaaat ttagccaaat taaaaaaact tcatgaagaa ttagaaaaag cccctttagt
     4561 agaacgcgtt tttagtatca tcaatgcccc tttgcttcaa agttcgcaaa atacggattt
     4621 aaaagaactt ttaaaaaata tcccaaatat agaaagccaa gatataaacc gcacaaaagc
     4681 ccaaaatgaa attttaaata gtccctttta taaaaataat atcatctcaa aagatggaaa
     4741 agtaacaggg cttattattt acttaaagcc tgatacagtt tataataatc ttatagaaaa
     4801 acgcgatctt gctaccgatg aaaaagaaaa agatcaaatt cgtcttgcca taaaagaaca
     4861 tcaagacaag caaaaagtta tcacgaaaca aagtctagat actattaaaa gcatagttcg
     4921 aaattatgaa aaaaataaag atacgctcta ccttggtggc gtaagcatga tcgctgatga
     4981 tatgatagct tatataaaat ctgatcttgt gctttatggt gtttctcttg tatttttact
     5041 aggacttgca ctttattatt ttttccgctc atggcgcttt gtttttttac ctctttttat
     5101 ttgttttata agcttaagtg cggctagtgg agtttttgcg cttttaaatt ttcaaatcac
     5161 ggttatttca tcaaattacg ttgctttggt tttaattatc accttaagtg tagttgttca
     5221 tttgatcacg cattttatcg aaagcaccca aaatcatccc aaagctaaag ttgagcgcat
     5281 agtgcttgaa accttactag cgaaagcaaa tcctagcctt tatgccattg ttacaacgat
     5341 gataggattt ttttctttaa tcctatcaaa tatcgaacct atcataaaac ttggcattat
     5401 gatgagtata ggtataggtt tagctcttat ctttagttat ttgtttttag caagtatctt
     5461 agttctttta aaaccaaaaa attatcataa aaaagagttt aaatttaatc ttttagcctt
     5521 ttgcgccaaa accgctcttg atcctaaaaa gcgtcgcatg atttatgaaa tttcagttct
     5581 tgctataatc ttagctttaa taggcatttc aaaactcaga gttgaaaatt cttttgtcaa
     5641 ttatttcaaa gatggtagtg aaatcaaaaa aggacttttg gttattgata aaaatctagg
     5701 tggaacctta cctttagaag tgatcattcg ttttccaaat aataaaaacg atcaaaatgc
     5761 aagcgatact cttgatagtt ttgaaagtga atttgaaaat ttagccacac aagaaactta
     5821 ttggtttgac tctaaaaaaa cacgcattgc aaaaaaagtt catgaatttt tagaaaacaa
     5881 agaatttgta ggttcggttt taagtcttaa tagtctttta accctaggga aaaatattaa
     5941 cgatggaaaa gagttggatg attttgccct tgcgttttta aatgaaaatt tgcctgccaa
     6001 atttaaacaa gacttgcttt caccttttgt aagtatagaa aataacgagt taagatttag
     6061 catgcgtatt gttgattctg atccgaattt aagacgtaat gagtttttaa tagatcttaa
     6121 aaaacagctc aacgagcttg taaaaaatga tggagtagaa gttcaaatca caggcataat
     6181 ggtgctttat aataatatgc tccaaagtct tttttcatcg caatttgata ctcttatatt
     6241 tgtaatttta gctattttta tactttttat cattgttttt agagatttaa aattttcagt
     6301 tgcggctata ttggtaaatg ttattccttt aagtgtggtt tttgctctta tggggctttt
     6361 aggtattcct ttggatatga tgagtattac tatagctgct attgctatag gcataggcgt
     6421 tgatgatgct atacattata tttatcgttt tagagaagaa attaaaaaca aaagcctaga
     6481 agaagccatt atgatttctc accttagtat aggttcggca ctttattata ctaccattag
     6541 catagtttta ggttttagtg ttatgatgag tagtaatttc attccaacaa tttattttgg
     6601 aattttaacc gtttttgtaa tgattttgct tttaagtgga agtttgttct tattaccaag
     6661 ctttttaatc actatttatt ctaagaaaac caagtttcca aaccaacata aagagcatat
     6721 attaaaacaa taatagctat atattttaaa aaatttttca tttttatcct ttatttaaaa
     6781 tctttaaaat gatttttgca agctctaaag ctttaaaacg atgagagata ttattcttct
     6841 catccacgct aagctgggct aaggttttat caaaaccctt tggaataaaa aggctatcat
     6901 aaccaaaacc attttcacct ttttctgtat ctattacttt tccatgcatg gttccatgcg
     6961 tactaaattc ccccatcaaa cctaccatag caatagcagc aacataatat gccttacttt
     7021 gtttaaaacc tttttttatc atttcattga caagtttatc acggttactt ttatcatcgc
     7081 ccttaccgct aaatcgagca gaataaattc ctggatttcc ttctaaaaca tctacacaaa
     7141 tgccactatc atcacttaaa gcgataaaat cttttttttg cttttcatcc aaagcattaa
     7201 aaaccgctct tgctttaatc aaggcgtttt ctttaaaagt ttttccattt tcttcaatct
     7261 caaaaggcat taaaacttca tcaaaagcat aaatttcaaa atcttttaaa atttctttaa
     7321 gttctaaaac tttatgttta ttgctcgtag ctaggataat cttcataaca aaagctccaa
     7381 aataatatca aaaacaaaaa tatgatttta taaaatttat ccttgtgcgt agcttttaaa
     7441 tacaaaatgg taaaacgatg ttaatcaatg cttaatccat ttcatagtaa aattatccta
     7501 atttaaattt caaatttaat aggaaattga taatgctaaa taatgtctta cccttatctt
     7561 tcatagttgg aacaagattt tttgggcttt ttatagtttt gccagtttta agtctttatg
     7621 ctttaaaact tgaaggtgct aatgaatttt tagtgggact tttagttggt gtttatgcct
     7681 tagctcaaat gattttacaa gtgccttttg ggattttaag tgataaaatt ggtcgtaaaa
     7741 aaaccatgct cattggactg attattttta taataggctc tttaatctgc tcttttgcgg
     7801 aaaatattta caccatgctt ttaggaagaa tgctccaagg tgcaggagct attggagctg
     7861 tggctacagc aatgataagt gattttatca cagaagaaaa tcgtggtaaa gccatggcgg
     7921 taatgggttc ttttatagga cttagttttg cagcttctat ggtgatctct cctttaatga
     7981 gtgcaaaatg gggtttatct agcctttttg atcttagtgc agctttgtct cttttatgta
     8041 taattttgct ttatactatt gtacctaaag aaaacaaaat cactcatgaa aatgaaaaaa
     8101 ctcctttttt tcatcttatt aaacaaaaaa atttagccct tatgaatctt actaatttca
     8161 tgcaaaaaat gcttatgagt atagcatttt taagcattcc tatcattcta gtaaaacatt
     8221 taggctttgc ttctgataaa ctttggattg tttatagcgc ttctatggta gcaggtttta
     8281 tcgctatggg ctttgctgga agtttaggcg aaaaaagagg tttagctaaa caaattttac
     8341 tcttaggaat tgtttttttc atactttctt atcttttctt tgcttttagt aattctatag
     8401 atttttttat catagcagtt gtgatttttt ttataggttt taatttacat gagcctatta
     8461 tgcaaagttg tgcatcaaaa ttttgtaaag ttcatgaaaa aggtgcggca ttagggttgt
     8521 ttaatgcttt tggatatggt ggaagtttta taggtggtat tatcggaggg atatttttac
     8581 atctagatgc cttaaatctt ttagctatta ttttagtaat tttagctcta atttggcttg
     8641 tagcattatt tttcttaaaa aatccagctg attttaaaaa cctttatcta cctttagaaa
     8701 cacctttaaa tttcagtact tttagtgaaa atttaggggt tgtagatatt tataaaaact
     8761 ctaaaaatct tgttgttaaa tttgatagca aacttacaaa taaagaagaa ttagaaggca
     8821 aaattaagat ctaattttgc cccgcaaaac ccattgcttt tatcatcact tttgccttgc
     8881 aatctgcaca gcaataaagt gttttgattt tattttcatc attaccaaat ttaggtttca
     8941 ttaaattggc tattttttct acagcttttt tggtcgcaaa ttctttaccg cattctatac
     9001 aggaaaaaag cccatctttt gccatggttt gatattcaaa ataagaagct ctaaactcca
     9061 ttccactacg aaataatttt aaagtatctt tttcagcaca acttaactca caatacccac
     9121 aagtcgtaca aagagaagca ttgaatttca aagcattttc ttgtttatca gcgattaaag
     9181 ctcctacatt acaggcaccc acacaagaaa gacaaagcgt acaggtatta ggattgattt
     9241 ctaccttacc ataacgcaac cattcgccac tttctatact accaaaatct tcatttttta
     9301 tcatttcttg cattcttttg gcaaaatttt ctcttgtagt taaggtgtta ttatgaaaat
     9361 catattttaa atcttgtatg aattcttgct cttttaaaac attttgcaat tctttttcat
     9421 ctttagcaac aaaaatagct tttttttgaa attttctctc aaaaaaagta tttaaaagca
     9481 taatggcttc attgctacca cgagatacaa agtccgtata aaaaaccaaa tttgcaccac
     9541 tattttgcaa aagtgttaaa aaatgcatag aagaaagcca tttttcaccc tctatcataa
     9601 agggtaaaac atcttttggt aaagcaaggt ttaaattttc taaagacatt tttttaggaa
     9661 taatcaaaat ttttttatct ttataaaact cacaaagggt aaaaaaactt tctcttggca
     9721 taggagcata atcaagcgat ccgctaggac acacactaat acatcctcca caacccaaac
     9781 aatccacttg agaaaattct aaatgctttt tttcatcatc ttttaaaatc gctacagtag
     9841 gacaaatttc agcacatttt gcacaatgtt cactgcgtct ttcgtggtat tgacacacgc
     9901 tagcattata gctaatataa gttttataag gatattttgg acttttactt tgcaaaaact
     9961 caagcaatac ttcaagattt tcaaaattta aaagattata acatccactt tgtcttgtaa
    10021 aatctttacg cacaacgctt aaatcttcag ctttaaaaag taaaaaatca aaatctattt
    10081 ccacttcttc gccttgattt ttaaccacag cacaaagctc ccctacactt ccaaaaacag
    10141 ctaaaatttc tgcactgctt aaagcaataa ccttaaatcc atgttctttt aaaaactcga
    10201 cagtttgagt atcactatct actaaaatca aacgattttg cacttctttg ctttgttcta
    10261 aatcaagccc taaatcataa acgctagctc ttgctttata aagcgttaaa acatttttac
    10321 tttgatctaa aatttcatct tgagaatttt taagataaaa attaatctca ggggcataaa
    10381 tttgtgcttt ttgattttta tcattgcaaa ttaatgcttc tttatcattt gcctgatcta
    10441 aaatttcaat agcatcaggc aaagggatta aaacatcatt ttttatataa acaaaatctt
    10501 gcattgtctt ccttaatctc tttaaaacat cattttataa attctatgtt aaaataacca
    10561 aatattttct taaggcttaa gatgaacaaa tttagaactt ttccacagat taacactctt
    10621 attgaagatg agagtttaaa atcctatcct ttttatatca aagcattttt ttgtaaaaaa
    10681 gttgtcgcaa aactaaaaga aaatttttcc caagatgaaa tttctaaaga taaactactt
    10741 ttagaaatca aaaaagaaat caaaactttt taccgcaaag atttacaaag tgtgattaat
    10801 gcaagcggag tggttataca cacaaacctt ggcagaagtg taatccatga agaactttat
    10861 gaagcgtgta aagatatcat ttgtaattat tctaatgtag agtttgattt agaaaatgga
    10921 aaaagaggct ctcgctatgc tttggtattg gaaaaactta aaatgctttt tgaatgcgaa
    10981 gatgctttag tagtcaataa caacgctgca gcagtttttt tagtgcttaa ttctctttgt
    11041 tatgataaag aagtcataag ctcaagagga gaacttgtag aaattggcgg aagttttcgt
    11101 gtgcctgaag tgataaaagc tgcaggtgta aagctttgcg aagttggaac tagtaacaaa
    11161 acacacttaa aagactatga acaagctatc agtgaaaata ccgctctaat tttaaaaacc
    11221 cacaagtcta atttcgctct tatgggtttt catagtgaag taaatataaa agacctacat
    11281 gaactagcaa aagaaaaagg gcttttgagt tattatgatc taggttctgg ctggtgtgaa
    11341 aatttaaatg aaaagctgat taaaaatgaa cctaaaatca aaaaactcgt acaagaatgt
    11401 gatattttaa gttttagtgg agataaactt tttggtagtg tgcaagcagg cattatactt
    11461 ggaaaaaaag aactcataga aaaacttaaa caaaatcaac ttttaagaat gctaagagtg
    11521 gataaattaa ccctatcttt tttaaatgaa agcttaaaag cttatttaca aaaagattat
    11581 gaaaaaatta ttaccttaaa acttttaaat gatgacttat cctttataga agaaaaagct
    11641 ttaagagtgc aaaaaaaatt aaaatttcaa acccaactca aaaaaagcaa aagtttagta
    11701 ggaggaggtt ctatgcctga taaaagttta gatacttata tactaacttt tcaaggagat
    11761 gctttaaaac tacaaactcg atttagaaaa gaaaatatca taggacgcat tgaaaatgat
    11821 gaatttgttc ttgattttag aactatacga gaaaatgaac ttcaaaaact tattcttaca
    11881 atcaatcaaa tggaaaactt atgaaatctg ttattatagg aaccgcagga catattgatc
    11941 atggaaaaac ttcactcatt aaagctttaa atggttttga aggcgatagt ttaaaagaag
    12001 aacaagaaag acaaatcacc attaatttaa gtttttcaaa tcttaaatta aaagataaaa
    12061 acatttcttt tatcgatgtt ccaggacata aagatttggt taaaactatg gtaagtggag
    12121 cttttggctt tagtgtttgt ttatttgtcg tagatattaa cgagggttta aaagaacaaa
    12181 gtttagaaca tttagaaatt ttaaaaattc ttgatattaa aaatatcatt ttagtactta
    12241 gcaaatgcga tctttgtgaa aatatagagc aaaaaagtgt agaaatttta gaagagttaa
    12301 aaaatttaga ttatcccatt ttaaaagtat ttcataccag tataaaaaat aatcaaggca
    12361 tagaagaatt aaaaaattat ctttatacca tagaaaacaa agaaaatgat gaagaactga
    12421 tttttcatta ttatatcgat agagtttttt ctctaaaagg tataggaact gtcgttacag
    12481 gcagcttgaa tgaaggaagt atcactttaa atgaaaaaat catctgttta gacactcaaa
    12541 aagaactcat tgttaaaaat atacaaaatc acgataccaa tctagagcaa atcaaagctt
    12601 gcaaccgtgt ggctttaagt ttaaattgtg attataaaga gttgaaaaaa ggttatttac
    12661 taagtaaaaa aggttatttt aaagccttta aagaatgcga tgctttagtt aaagcaaaaa
    12721 atttacaaaa tagcaaaatg attttttgcg tgggttcaag acaaatagaa tgcaaaataa
    12781 atatattaaa aaaactagaa aatgatgaat tttttgtgca ttttagtttt gataaaaatg
    12841 tatttttaag ttttgatgag gcttttattt tattacaaaa caatcgtgtt ataggcggtg
    12901 gtaaggtttt aaatccttta agcgaacctt taaaaaaaga acaaaaaaat aaatttttaa
    12961 tgtttttgaa aaataaagat tttaaagcgg ctttttcttt cttaaaagac gcacacaaat
    13021 acggctttgg cttgctttca agttatcaga gatttaaact ttctcatcaa aaagcattga
    13081 aattagtaaa agaattaaat caagtatttg ttgatgaaaa aaatcttaat gtatatcatt
    13141 tacaaagtct agaagaaatt aaaaatttca tcaaattcat acttgaaaaa aatccttatg
    13201 ccatgctttc agcacattct ttagctttaa ggattacttg ggcaagtgaa aatttttgcg
    13261 aactcgggct taaagagatg tcaaatttat tggattttca aaatggaatt tattttaaaa
    13321 aaggcataga ttttgaaaaa cttcaagaaa aaaacaataa ccaaatgtat gaaattttaa
    13381 aaaaacaagg tattaaaccc gaagctcctt ataatcttta tgatttttta gaacttgata
    13441 gaaaaagcgg agataatata ctcaaaaaac ttacccaaaa aggcttagtt gtaagacttt
    13501 cacacaatct ttttatagaa aaacaagctc ttgaaaaact tatgcaagaa tgtttaaatt
    13561 tattaaaaaa tcaaagtctt gatgtgcaaa gtatgaaaga atatttcaat ctttcaagaa
    13621 aatatgctat tgcttattta gaatacttag acaaatttcc tcaagtaagc aaagaagctg
    13681 aaaaaagatt tttaacaaac atttagaaaa tcattataga attaaacata atttatttaa
    13741 aggatttgta aactatgaaa aaattaagtt taattcttgc ctgttcagca tctttgtttg
    13801 ctgcaagtaa ttcagaaatt agtgattttt attcaaaaag cattaaagca caatttccaa
    13861 atactaccgt tagtgtatca aatcgtcaaa aggttggtaa tacgggtttt gaaagtgtta
    13921 ttgtaagcgt tgaattaaat ggacaaaaac aagaaaacat tctttttaca aaagatagtc
    13981 ttattacccc tgatcttatc gacttgaaaa cgggaatttc ttatgctcaa gaatatgaaa
    14041 tgaaaaaatt tcaagaagca agagaaaatt ttacaaaaaa tgctaaagct gtagcacaaa
    14101 aagaaaccat ggtaatagct ttgggagata aaaataaacc tgcaatttat gttttttcgg
    14161 atcctgaatg cccttattgt agagaacatt tagctcaaat tgataatgaa cttaaaaact
    14221 atcaagttaa ttatatttta actccagtac atggaaaatc tgcttttgaa aaatccgctc
    14281 taatctacaa agaagcaaaa aaagcaaaaa atgataaaga aaaaatcgca attttaaaca
    14341 aatactatga tgcaaatatc aaaaattatc caaaagtaag cgatgcagaa ttaaaagaag
    14401 ttttttcctt atatgaaaaa tatcgctcat taggtcttag cgctactcca actattatta
    14461 aataaaccta atgtctaaaa ttactttaat tttaagcttt tttataacac tctttatgag
    14521 tgcttgcacc aatgcaactt tcacacaaag ctttattcaa acaagcaatg aaggcatttt
    14581 tatcagatca caaaaacaac aaagttttaa aatttccttt caaaatccta gtcaacttca
    14641 aactactcta gatagagatt tggctttaaa acttaaaaat ttaggcttaa aagaagtaaa
    14701 agagaatgca gattatgaaa ttttaatcaa tcttgtagat atgaaaaagc attcttatgc
    14761 tcaaaaaatc acaacttcag caagattttt ttatgatttt gatcctttgg aaagcgatgg
    14821 agaatggatg gtagaaaact actatactat gcaagttaat ttacaaatca actctaaaaa
    14881 tcacaattct caaaaaacaa gtcttcttgc aagaacagct tatcttggaa ataaagaacg
    14941 ctgtcaatta tctttagaaa ataaaattat aaatcaaata gtgagttttt tttattttta
    15001 agaaaaagac aatcaagagt ataaaaactc ttgattttaa gaattattaa gcaaaataag
    15061 gtttgatttg ttctatccaa gcatcaattc ttgattcagt ttgatcttct tgattatcat
    15121 tgtcaagagc aagtccaaca aatttaccat ctacaaccgc atcacttgct tcaaatgtat
    15181 aaccatcagt tgaaacttct cctaccaaat ttgcgcctgc atcttttaaa ttttgagcta
    15241 atttacccat gccaccacaa aaagtatcag aataactttc actatcaccc ataccaaata
    15301 cagctacggt ttttccacca agactaagcc ctgaaaaatc aaaaccatcc caatcatctt
    15361 gtaaatcacc acttccccaa gttgaagttc cacaaattaa tttatcgtaa gaatttattt
    15421 tagctgcatc aatatctgag atattaaaaa catcgctaat tccaagtttt aaagcaattg
    15481 tattagccgc tccttctgta ttccccatag cactaccata gattactgct actgacatta
    15541 ttttctcctt ataatttgat ttgatatttt atacggaact aattttaaca tagttttgtt
    15601 taaatcacac aaaaaatgtt ttatttcaat aaaatgtgtg aaatttttgt tacgcggaca
    15661 aacaatataa aatttttcaa aattgttttc ttttatcaaa ttcaataatc catgaatttc
    15721 attttcaatt tttaaattat gtgtattaat ctctttgcaa agtggtaaaa ttgcaaattt
    15781 cttatctatt ataataagat caccatcttg atctatattt tttccattat tttgaaaaga
    15841 aaccttatca taaacataag agctaaataa aatttgcgca tcaaaacaaa tgccataaag
    15901 ataaattctt aaagatcgac attcttagat attttagtat taaaaattaa gctttttctt
    15961 ttttgaaagt aaaaagcgta tgcattaagc ttgatattta tattttgaat cttaccaaat
    16021 gaaacatgca ttatatcatg taaaaaattt ccaaatatca tttttaaact cttggtattt
    16081 tttgcatatg aaagaggaat ttttagagcg ctatcaacgc tcgcattata ttgagttaaa
    16141 aaagtcaaca taagctcttg attgtttaaa tagcgataaa tttgcggtat aaattcttgc
    16201 ttatcatcaa atccaaataa catctttaac ctttatagca agaaaattct ttattaagat
    16261 taaaaatttt acaatattca caatacacac aacttacact tctttttgca caaactaatg
    16321 gaattttacg ctttttagct tcatttttga tttttttcat agtattatga tttaaaaagc
    16381 ttgttaacat tactatacat tctgtatcac aaggaatcgg cttgcgatta actctatttt
    16441 cattacgcgc atcccagtgt tctatttttt tagcacctaa atcatgtaaa acagctctaa
    16501 taggagtgat ttcatctgca ccaataac
//
LOCUS       DBBXPZ010000036        16339 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.038, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000036 DBBXPZ010000000
VERSION     DBBXPZ010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16339)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16339)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16339
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.038"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(18..1258)
                     /locus_tag="ACJFD7_000943"
                     /pseudo
     CDS             complement(18..1258)
                     /locus_tag="ACJFD7_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002808271.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
     gene            complement(1258..1773)
                     /locus_tag="ACJFD7_000944"
     CDS             complement(1258..1773)
                     /locus_tag="ACJFD7_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HGG0859765.1"
                     /translation="MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNL
                     KTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSNFNGIKEVNFRVGDDKECLKLVF
                     INKADFILMGISSNEASKNVIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
                     ASKTYLLIGGM"
     gene            complement(1774..2781)
                     /gene="tsaD"
                     /locus_tag="ACJFD7_000945"
     CDS             complement(1774..2781)
                     /gene="tsaD"
                     /locus_tag="ACJFD7_000945"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HGG0859766.1"
                     /translation="MKNLILAIESSCDDSSIAIIDKNTLEYKFHKKISQELDHSIYGG
                     VVPELAARLHSEALPKMLKQCKEHFKNLCAIAVTNEPGLSVSLLSGISMAKTLASALN
                     LPLIPINHLKGHIYSLFLEEKISLDMGILLVSGGHTMVLYLKDDASLELLASTNDDSF
                     GESFDKVAKMMNLGYPGGVIIENLAKNAKLKNISFNTPLKHSKELAFSFSGLKNAVRL
                     EILKHENLNEDTKAEIAYAFENTACDHIMDKLEKIFNLYKFKNFGVVGGASANLNLRS
                     RLQNLCQKYNANLKLAPLKFCSDNALMIARAAVDAYEKKEFVSVEEDILSPKNKNFSR
                     I"
     gene            complement(2778..4172)
                     /locus_tag="ACJFD7_000946"
     CDS             complement(2778..4172)
                     /locus_tag="ACJFD7_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M99 family carboxypeptidase catalytic
                     domain-containing protein"
                     /protein_id="HGG0859767.1"
                     /translation="MKFFLTILFFITSIFALELDFSVGENGKSLDDNNTVLIFGGIQG
                     DEPGGFHAASLLLSDYNITKGKIIVAPNLAFDSIIKRSRGNNGDLNRKFASISPKDPD
                     YKTVQRIKELILLPEVSMVINLHDGWGFYKPTYIDAMQNPKRWGNSSVIDTSEINASK
                     YPDLENIATQTVNSVNSSLADPKHAYHLKNTKTQELGDTEMLKALTYFVISNHKAAFA
                     NEASKNLPVNLRAYYHLLAIENYLKTAGIEFSRDFELTPQGVDKAINKELEVKLFDDR
                     ILLSLKNPRKVINYVPFPVNKELNYNTSNELTAVIAEGNSFYIQYGNRFQTRLYPEYL
                     EFSDAFNEVTFQVDGNETTVPFGTKVKVKENFLIPKIANVRVNIIGFDHSKDESGILV
                     HKKNMQTQYSLDMAGKIYRAEFYELRGANLQQLLEANINSKLIKNAKNLDLNTLKMAR
                     SKDKFLGSILVEFE"
     gene            complement(4174..5244)
                     /gene="dxr"
                     /locus_tag="ACJFD7_000947"
     CDS             complement(4174..5244)
                     /gene="dxr"
                     /locus_tag="ACJFD7_000947"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HGG0859768.1"
                     /translation="MILFGSTGSIGVNALKLAALKNIPISALACGDNIALLNEQIARF
                     KPKFVSIKDSKNKHLVKHDRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKE
                     LGKNIALANKESLVVAGSFLKGAKFLPVDSEHAALKFLLEGKKNIAKLYITASGGAFY
                     RYKIKDLNQVSVKDALKHPNWNMGAKITIDSATMANKLFEIIEAYHLYDFKEIDALIE
                     PRSLVHAMCEFKNGASTAYFSKADMKLAISDAIFEKQDTPILEAVDFSKMPALKFHPI
                     STKKYPIFKLKNTFLKEPNLGVIINAANEVGVYNFLENKSGFLDIAKCIFKALDHFGV
                     PKISSIEEVFEYDFKTREYLRS"
     gene            complement(5241..5966)
                     /locus_tag="ACJFD7_000948"
     CDS             complement(5241..5966)
                     /locus_tag="ACJFD7_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HGG0859769.1"
                     /translation="MFNTTRIISALVMIGAIIIIALIDQFFINFIVFAVLLYLSFSEA
                     KKLFALENISIIPLAIAFILGSLSHKALLFGILALLLVVGYLVYKKASLKPALIYIYP
                     SLPILALWQVYLDQGMFALFWLIIIVAACDSGAYFIGKLMGKTPFSPTSPNKTLEGVI
                     GGLICASVIGTILGVFVYSFWLSLLCSFFVAIFAVIGDLLESYFKREAGVKDSGDLIP
                     GHGGVLDRIDAVIIAAFVMVALL"
     gene            complement(5975..6313)
                     /locus_tag="ACJFD7_000949"
     CDS             complement(5975..6313)
                     /locus_tag="ACJFD7_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859770.1"
                     /translation="MPVSPLGNINYINQNMAYPATQASNELAKEGFAATLNMAEFNEK
                     EKTLNKLEKVNETHEIKEEIKEKAEQEEKKKKHNQEAKTSDDEKNEEDESKDPNFKDA
                     QSIHRLDISI"
     gene            complement(6315..7622)
                     /locus_tag="ACJFD7_000950"
     CDS             complement(6315..7622)
                     /locus_tag="ACJFD7_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT RNA binding domain-containing protein"
                     /protein_id="HGG0859771.1"
                     /translation="MKYTELLQLQTFFSRFKKIDFIKRINDNILELSFDRERFIFDLT
                     RAMSAIYTAKFNAKNYNAPFDFMLKKYFSNAFIKEVKVLEGNRILCFSVKANKAYKSY
                     ESKIYFEFTGKNTNVILTDEKDLIIEALRHIDKSYRVVKPNVILESLKPYKMDENFEE
                     IKDFADYFSRKFTSIYESKIKQIKNLKLAQVDKKIQNLQELFSSLDEENSLLLKALEY
                     RKRADVLFANLSVLKDYEREFKLDDFEGKELEFKLEFNPKQSANLYYKNAKKLEQKAK
                     NLNIQRQNLKEKLDFTLSLKELLLQAKSEIELEILLPKKNSKKNQDHKQEDLVVNFYF
                     NEFKICVGKNEKGNEFLLKNAKKDDLWLHVRDIPSAHTLIVSNKQKISLDVIEFAARL
                     CVSFSKLKKGSYWVDYTLKNFVKVQQKAFVNYTNFKSINITKD"
     gene            7684..8259
                     /locus_tag="ACJFD7_000951"
     CDS             7684..8259
                     /locus_tag="ACJFD7_000951"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0061603 - molybdenum cofactor
                     guanylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HGG0859772.1"
                     /translation="MQLNELNCVILCGGKSSRMGQDKSKLILKNQNLTQFQVDKFSKI
                     FKNVYVSAKEDKFENHFSLIKDSLEFEVYSPMLALYSILSNFKNEFVFVLSVDSPKVG
                     ENELLKMLPFLEQNYKIIIAKTPLHKHPLCGFYHSSLAQTCKNFLEKNEQKIGLLFSE
                     IKTKFVEFEDEDAFLNLNFYEEYEKFKSKLK"
     gene            8256..9245
                     /locus_tag="ACJFD7_000952"
     CDS             8256..9245
                     /locus_tag="ACJFD7_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004620 - phospholipase activity [Evidence
                     IEA];
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HGG0859773.1"
                     /translation="MRKIALFLSLCVFIWASDLQQALEYEKQGDYKKAMEIYKKLALK
                     NSSVLISQEQNNSSEATQMQNSITIKKEEKQDFSRLALANYLGENESFNPLGISSYKM
                     NYFLPFAYSFNSLGTNNNKSEAKFQLSVKKRLFENLLGLDEKYYIAYTQTSWWQIYKH
                     SSPFRETNYQPEFFIDLPLYLKDYEFFNNLRVGILHESNGKGDENLQSRSWNRIYVST
                     AILYNKFLFVPRLWYRIPENKKDDDNPAILHYMGNFDVNLAYLGDDYFINLMLRNNLK
                     FHNNKGAIQVDLGYDIFNNGIYWYLQYFNGYGESLIDYNKHLQRLSTGFLISY"
     gene            9331..10299
                     /locus_tag="ACJFD7_000953"
     CDS             9331..10299
                     /locus_tag="ACJFD7_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0859774.1"
                     /translation="MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQL
                     EIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKFVSPTTAGTMDCAKFGILISLIF
                     FAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
                     YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNL
                     GISYNGILFLGLMIVSVITSLVIVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALC
                     GALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKVYA"
     gene            10292..11230
                     /locus_tag="ACJFD7_000954"
     CDS             10292..11230
                     /locus_tag="ACJFD7_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HGG0859775.1"
                     /translation="MRKKMLILSFLTLGMIGIFILVGLNGFDEYALKSRFLQIAAIII
                     VAICIAVSTVIFQTLCNNKILTPAIIGLDSLYMLLQSALIFSFGAANLSVYKNDINFL
                     ITLVCMVVFSLGLYKILFSSDRSIYLIMLLGLVFGTLFSTLSSFFEVLIDPDEFMVIQ
                     GRMFASFDNIAFDVLILAYIISFLSFIWIFRYMKFLDPLNLGKDLAINLGINYQKISK
                     QLMIIIAILTSISTALVGPITFLGLLVVNITYELFKTAKHSILLSACILISILALLGG
                     VFFVSRVFDYNATISVVINFLGGIYFIYLVLKGNKL"
     gene            11227..11982
                     /locus_tag="ACJFD7_000955"
     CDS             11227..11982
                     /locus_tag="ACJFD7_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0859776.1"
                     /translation="MIKLKNITKFYDNKVIISDLSLDFHKGKITSIIGANGAGKSTLL
                     ALASRLIKPSSGEIYIDGMNLKNYKEQILAQKISILKQQNNINLRLKVEELVAFGRFP
                     HSQGRFNTNDKIKINEALEYMELSNLRNDFLDTLSGGQKQRAFIAMIIAQDTEFIMFD
                     EPLNNLDMKHSVQIMQLMKNLVKDFNKSIAVVLHDINFASIYSDEIIALKDGKLLKQG
                     SKDEIINQENLKQIYDMDIPVSQINGKKICIYF"
     gene            11995..12987
                     /gene="ceuB"
                     /locus_tag="ACJFD7_000956"
     CDS             11995..12987
                     /gene="ceuB"
                     /locus_tag="ACJFD7_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin ABC transporter substrate-binding
                     protein CeuB"
                     /protein_id="HGG0859777.1"
                     /translation="MKKSLIFAFFAFFLSLILTACNSNSNENNASSTTKTNTATVKVL
                     PISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKVVGVPAKNLP
                     KYLQQFKNKPSVGGVQQVDFEAINALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNA
                     NFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKIS
                     AFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVIDRNIIVGNK
                     ERAQGILDNALVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK"
     gene            complement(13060..13149)
                     /locus_tag="ACJFD7_000957"
     tRNA            complement(13060..13149)
                     /locus_tag="ACJFD7_000957"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13113..13115),aa:Ser,seq:gct)
     gene            complement(13214..13768)
                     /locus_tag="ACJFD7_000958"
     CDS             complement(13214..13768)
                     /locus_tag="ACJFD7_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859778.1"
                     /translation="MINKNKLFRQVHIYLSLFFLPCALLFALTGIAYIFGINQDVGLK
                     VEQYQLSKVIESGKEREALIEYLKTNGLKVPSNTNIIKSKDKGITIGGTHYSANITQN
                     STNEYNITLKTRSLLGDMIMLHKDKGAWYFSVLSVGFGITLFMLYISGLMITLFANKK
                     DRSKQFAVLGVGVVVTLLLAYLSL"
     gene            complement(13904..15736)
                     /locus_tag="ACJFD7_000959"
     CDS             complement(13904..15736)
                     /locus_tag="ACJFD7_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0042279 - nitrite reductase (cytochrome,
                     ammonia-forming) activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HGG0859779.1"
                     /translation="MKKNILRLGIVVLVLLIAGVLWLNNDINQKKEDEANKNAIAANA
                     DFSLLSDDDPNFEKWGKVFPEQLKMYLTVEKEEPKATEFGGNLAYSKLIRFPQLTILW
                     AGYPFSLDFNEERGHFWVQVDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPW
                     LIKNVAKGDFTAFNSTNYWTMIKNIPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPN
                     DMSLRLTRPAAINALVSRGYEKDPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKV
                     MGETIVDDSSKKWWNGTQKNYDEYEFWRDGNKAKEIETDGIVLTFPWSEWKKGQPFRI
                     EMLDDYYDKVRGVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCVDCHMPYV
                     REGAKKVTQHNITSPLRDINSACKSCHKQSEDYLKAQVLDIQNSVAHDQRTAEYAIVS
                     LIMDTKKLRDELGNMEKFQSDGKADAKKISEELKEVLELHRKAQMRADFVNAENSTGF
                     HNPREASRMLLQAVDMARMGQTKLVEIAAANGIKDFKTSNLGFEDIQKFNPGELYYKV
                     DVNNHKAGERYYADEKDVNGNPPKELLEHDKELAPYNYQVIDKK"
     gene            complement(15751..16266)
                     /gene="nrfH"
                     /locus_tag="ACJFD7_000960"
     CDS             complement(15751..16266)
                     /gene="nrfH"
                     /locus_tag="ACJFD7_000960"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase small subunit"
                     /protein_id="HGG0859780.1"
                     /translation="MIILRRKILKKTSNLFTIFLVLLFVFFAVGFYTFYNAKGTSYLS
                     NASESCNNCHIMNEVYSEYMAGPHSQKVKGEPRATCVDCHLPHNFVAKWIAKAQSGLG
                     HAYAFTFKLDELPTNLSATEKSRKMVQENCIRCHADFAQTAINATTNPHADKSLNCAS
                     CHKDVGHKHGI"
BASE COUNT         5483 a         2751 c         2262 g         5843 t
ORIGIN      
        1 atggtcattg ggtttcctta aaatttatct atttttagtg atattttgtc atctttttcg
       61 ctaaattgat acaacaaatc ttcacaagga taagagatac atttttcttt acaatctttt
      121 tttgaatttt gttttatttt ttctagcatt aagggaagtt ctttcttaat caaaagtttt
      181 accggaattc ccatgccatg atttaagttt ttaataaatt ttccatcaac ttgagattct
      241 ttagtaatag aatgcaaagt tacatcaaaa ccaagtttct caagttcttc atagaacata
      301 gttttttctt ttaaagaaac atactcatcg tataaggaat gataacttat aaagcaagtt
      361 tttaaacatt ttgattgttt taaaagatga tcttcctcta aaagatttcg aatttttctt
      421 cttgcgggag aaaaaaaacg aggcgatgaa gaattactcg tccaaaaagt ttttgtcgaa
      481 caatgtgttt taatatgatg aaaaaaatca aaagtagcaa attcactata ctgcataaaa
      541 tctatttcct ttccaaaacc tacaactctc cataaaaact tagcgtatgc agaattatcc
      601 aacactccat ctactaacca aggcgcaatc ttagctgcca aatgcgctaa atatcccccg
      661 tgagaacccc ctatcatgat aattggtata ccccccccat agtatcaaaa ggagcgtgtt
      721 ttttaaggta aagtgcgaca tttaaaatat cttgagcttg catgatccca aaattttgat
      781 actcgttttt tgtcggttgc aaactcacat gcaaatttaa aaaataattt ggcgtaaaat
      841 tacctttttg cttgccttca actatttgat tatttacaaa atgaaaaatt tcactcattg
      901 ctttatagtc ttgaatttta tcaacatcat aaggaagctt gatatccgca gcttcacaac
      961 ttgcttttaa aataagcttg tctatatcat ccataaaaaa gcttgatccg gtttgaggac
     1021 gattgccaat acaatgataa tttactccaa ctacagcagt attaaattgc cttaccatat
     1081 aatcaccaac atattggatc gatgatatat catcacccat accttgcacc acaaacacca
     1141 aggcttcagg tgttttttca tcatcatacc aaagcttaaa ttcaagcttt gattctcttt
     1201 ttataccaag ctctacatca tcacaagagt caatctcata agctttactc actatcatta
     1261 cattccccct attaaaagat aagttttact cgctaggttt ttaaaatttt cattcttact
     1321 taaaatcaca caagctttat tactagaaga gcttgtaaag tctatatttt ctaaatcttc
     1381 atggctttga ttagctgcgt tgatgataac atttttactt gcttcattgc ttgaaattcc
     1441 catgagtata aaatcagctt tatttataaa aacaagtttt aagcattctt tatcatcgcc
     1501 tacgcgaaaa tttacttctt ttataccgtt aaaattacta agatcaacat tttcaacccc
     1561 gcttacatta ctcatcgttt ttatagagct taaatgatca ttttttaaag tataaatgct
     1621 tatatcattg atcaaagttt taaggttgtt taaagacttg ctaacttcag cttcatcctt
     1681 acttgaactc atttttggca aagcaatagc ggctaaaatt cccaaaataa cgatcacaaa
     1741 aacaagttct aatatagtaa aagctttttt catctatatc cttgaaaaat ttttattttt
     1801 agggcttaaa atatcttctt ctacacttac aaattccttt ttttcataag catcaactgc
     1861 ggctcttgct atcatcaaag cattatcaga gcagaatttt aaaggagcta gttttaaatt
     1921 tgcattatat ttttgacata aattttgcaa acgcgaacgc aagttaagat ttgcactagc
     1981 tccacctaca acgccaaaat ttttaaattt ataaagatta aaaatttttt ctaatttatc
     2041 catgatatga tcacaagctg tattttcaaa ggcataagct atttctgctt ttgtgtcttc
     2101 atttaaattt tcatgtttta aaatttccaa acgcactgca tttttaagcc ctgaaaaact
     2161 gaaagcgagt tctttagaat gctttaaagg tgtgttaaaa gagatatttt taagtttggc
     2221 attttttgct aaattttcta tgatgacccc accagggtaa cctaaattca tcattttagc
     2281 cactttatca aaactttctc caaagctatc atcatttgta cttgctaaaa gctctaagct
     2341 tgcatcatct ttaagataaa gcaccatggt atgcccacca ctaacaagca aaattcccat
     2401 atctaaagaa attttttctt ccaaaaaaag actataaata tgacctttaa gatgatttat
     2461 agggattaag ggtaaattta gcgcacttgc taaggttttt gccatagaaa ttccactgag
     2521 caaagaaaca ctaagtccag gttcatttgt cacagctatg gcacaaagat ttttaaaatg
     2581 ctctttgcat tgcttaagca tctttggtaa agcctcgcta tgaagtcttg cagcaagttc
     2641 aggtaccact cccccataga tactatgatc taattcttgg gaaatttttt tatgaaattt
     2701 atattctaag gtgtttttat caatgatagc tatagaacta tcatcacaag aactttctat
     2761 agctaggata agatttttca ttcaaattcc actaaaatag aacctaagaa tttatctttt
     2821 gatcttgcca ttttaagagt atttaaatcc aaatttttag cgtttttgat caacttgcta
     2881 ttgatatttg cctctaaaag ttgttgcaaa tttgcacctc ttaactcata aaattccgct
     2941 ctataaattt tacctgccat gtctaaagag tattgtgttt gcatattttt tttatgaact
     3001 aaaataccgc tttcatcttt tgagtgatca aagcctatga tatttacgcg cacattagct
     3061 atctttggaa taagaaaatt ctcttttact tttaccttgg ttccaaaagg aactgtggtt
     3121 tcattgccat caacttgaaa agttacttca ttaaaagcat cgctaaattc taaatactca
     3181 ggatataatc ttgtttgaaa acgattgcca tattggatat aaaaagaatt tccttctgcg
     3241 ataacagccg taagttcatt gcttgtgtta taatttaact ctttatttac cggaaaaggc
     3301 acatagttga taacctttct tggatttttt aaagaaagta aaattctatc atcaaaaagt
     3361 tttacttcaa gctctttatt tatggcttta tcaactcctt gtggagtgag ttcgaaatct
     3421 ctgctaaatt caattcctgc agtttttaaa taattttcaa ttgccaaaag atgataataa
     3481 gctcttaaat ttacaggcag atttttactc gcttcatttg caaaagcggc tttgtgattt
     3541 gaaatcacaa aataagttaa agctttaagc atttccgtat cgccaagctc ttgggttttg
     3601 gtgtttttaa gatgataagc atgctttgga tcagcaagcg aagaattgac actatttacg
     3661 gtttgagtgg cgatattttc aagatcaggg tatttgcttg cattgatttc gcttgtatca
     3721 atcacgcttg aatttcccca acgcttagga ttttgcatcg catcgatata agtgggttta
     3781 taaaaacccc aaccatcgtg aagattgatc accatactaa cttcaggaag taaaataagc
     3841 tctttaatgc gttgaacggt tttataatca ggatcttttg ggctaatgct tgcaaattta
     3901 cggtttaaat ccccattatt cccacgagaa cgcttgataa tgctatcaaa agctaaattt
     3961 ggagccacta taatcttacc cttagtgata ttataatcac tcaaaagcaa acttgccgca
     4021 tgaaatccac caggctcatc gccttgaatt ccaccaaaaa ttaaaactgt attattatca
     4081 tctagacttt ttccattttc tcctacgcta aagtctagct ctaaagcaaa aatgcttgtt
     4141 ataaaaaata aaattgttaa aaaaaatttc attttaactc cttaaatact ctcttgtttt
     4201 aaaatcatac tcaaaaactt cttctatgct tgaaatttta ggtactccaa aatgatcaag
     4261 ggctttaaaa atgcatttag caatgtctaa aaatccactt ttattttcta aaaaattata
     4321 aacaccaact tcattagcag cattgatgat aacacctaaa tttggctctt ttaaaaatgt
     4381 atttttaagc ttaaaaatag gatatttttt tgtgctgatt ggatgaaatt ttaaagcagg
     4441 cattttgcta aaatcaacag cctctaaaat aggcgtatct tgtttttcaa atatagcatc
     4501 tgaaatagct agtttcatat ctgcttttga aaaatacgcc gtgctagctc catttttaaa
     4561 ttcacacatt gcatgcacta aagatcttgg ttctattaaa gcatcaattt ctttaaaatc
     4621 atataaatga taagcctcta taatctcaaa aagcttattt gccatagtcg cactatctat
     4681 agtgatcttt gctcccatgt tccaattagg atgttttaaa gcatctttga cactgacttg
     4741 atttaaatct ttgattttat acctataaaa agctccacca cttgctgtga tataaagttt
     4801 tgctatattt tttttacctt cgagtaaaaa ttttaaagct gcatgctcac tatcaacggg
     4861 taaaaattta gcccctttca aaaaactccc agctactaca agactttctt tgttagctaa
     4921 agctatgttt ttgccaagct ctttagcctt taaagtgctt ttaagtcctg caaaacctac
     4981 aatggcattg agtaaaagct tatcttgaca ttctgttaaa atttgctcta aaccttcttg
     5041 ccctataaaa actctatcgt gtttaactaa atgcttattt tttgaatctt ttatggaaac
     5101 aaatttgggt ttaaaccttg cgatttgctc atttaaaaga gcgatgttat ccccacaagc
     5161 taaagcagaa atgggaatgt tttttaaagc agcaagttta agagcattta ctcctatact
     5221 gcccgtactt ccaaaaagta tcataaaaga gcaaccatca caaaagcagc aatgatcacc
     5281 gcatcgatcc tatcaagcac gcccccatga ccagggataa gatctccact atcttttaca
     5341 cctgcttctc ttttaaaata actctcaagc aaatctccaa tcactgcaaa aatcgctaca
     5401 aaaaacgaac aaagcaaaga aagccaaaaa ctataaacaa aaactcccaa aatagttcca
     5461 ataacactcg cacaaatcaa gccacctata acaccttcta aggttttgtt tgggcttgtt
     5521 ggagaaaaag gagttttacc cataagtttt ccgataaaat acgccccact atcacaagct
     5581 gcaacgataa tgataagcca aaaaagtgca aacataccct gatctaaata cacttgccaa
     5641 agtgctaaaa taggcaaact aggataaata taaataagag ctggttttaa agaagccttt
     5701 ttataaacca aatatccaac gactaataac aaagctaaaa tcccaaaaag caaagcttta
     5761 tgcgacaaac ttcccaaaat aaaagctata gccaaaggga taatagagat attttctaaa
     5821 gcaaaaagtt tttttgcttc actaaaagat agatacaata aaaccgcaaa aacgataaaa
     5881 ttgataaaaa attgatcaat caacgcgata ataataatag cccctatcat cacaagagct
     5941 gaaataattc tagttgtatt aaacatattt ttccttatat actaatatct aagcgatgaa
     6001 tgctttgtgc gtctttaaaa tttggatctt tagactcatc ttcttcattt ttctcatcat
     6061 cgctggtttt agcttcttga ttgtgttttt tctttttttc ttcttgttcg gctttttctt
     6121 tgatctcttc tttgatttca tgagtctcat tgactttctc aagcttgttc aaagtttttt
     6181 ctttttcatt aaattcagcc atatttagcg tagctgcaaa accttctttt gcaagctcat
     6241 tgcttgcttg tgtagctgga taagccatat tctgatttat ataattgata tttcctaaag
     6301 ggctaactgg cattttaatc ctttgtgata ttaatacttt taaaatttgt ataatttaca
     6361 aacgcctttt gctgaacctt gacaaaattt tttaaggtat aatcgaccca atacgaacct
     6421 ttctttaact tagaaaagct tacacaaagc cttgcagcaa attctatcac atcgaggctg
     6481 attttttgct tgtttgatac aatcaaagta tgtgcgctag gaatatccct tacatgaagc
     6541 cacaaatcat cttttttagc atttttaagt aaaaattcat tgcctttttc atttttaccc
     6601 acgcaaattt taaactcgtt aaaataaaaa tttaccacaa gatcttcttg tttatgatct
     6661 tgattttttt tgctattttt tttaggtagt aaaatttcaa gctctatctc actcttagct
     6721 tgaagcaata attctttcaa actcaaggta aaatctaact tttcttttaa attttgtctt
     6781 tgtatgttta aatttttagc tttttgttct aattttttag catttttata atataaatta
     6841 gcgctttgct taggattaaa ttcaagctta aattcaagct ctttgccttc aaaatcatca
     6901 agcttaaatt ccctttcata atcttttaaa acactcaaat ttgcaaacaa tacatcagcc
     6961 ctttttctgt attctaaagc ttttaagagt aaagaatttt cttcatctaa actagaaaaa
     7021 agttcttgta aattttgtat ttttttatcc acttgtgcaa gttttaaatt ttttatttgt
     7081 ttgattttac tctcataaat gcttgtaaat ttgcgagaaa aataatctgc aaagtcttta
     7141 atttcctcaa aattttcatc cattttataa ggctttaaag actctaaaat cacattaggt
     7201 tttacaacac gataactttt atcaatgtgt cttaaagcct ctatgatcaa atctttttca
     7261 tctgtaagaa taacattggt atttttaccc gtaaattcaa aataaatttt gctctcatag
     7321 cttttataag ccttattagc ttttacacta aaacataaaa tacgattgcc ttcaaggact
     7381 ttaacttcct ttataaaagc attgctaaaa tactttttaa gcataaaatc aaaaggtgca
     7441 ttataatttt ttgcattaaa tttagctgta taaatcgcac tcattgcacg agtaagatca
     7501 aaaataaatc tttctctatc aaagcttaat tccaaaatat tgtcattgat acgcttgata
     7561 aaatcgattt ttttaaaccg agaaaaaaaa gtttgtaatt gtaaaagttc tgtgtatttc
     7621 ataaaagaaa ttataaaata ttttggcgaa ttttgtggta gaattacatt aaaaaggaaa
     7681 tttgtgcagc ttaatgagct aaattgcgtg attttatgtg gtggtaaatc tagccgtatg
     7741 ggacaagata aaagcaaatt gattcttaaa aatcaaaatt taactcaatt tcaagtagat
     7801 aaattttcta aaatttttaa aaatgtctac gtgagcgcga aagaagacaa atttgaaaac
     7861 cattttagct tgataaaaga ttctttagaa tttgaagttt actctcctat gcttgcgctt
     7921 tactctatac tttcaaattt taaaaatgaa tttgtttttg ttttaagtgt agatagtcct
     7981 aaagtaggtg aaaatgaact tttaaaaatg cttccttttt tagaacaaaa ctataaaata
     8041 atcatagcaa aaaccccttt gcataaacat cccctatgtg gcttttatca cagctcttta
     8101 gctcaaactt gtaaaaattt cttagaaaaa aatgaacaaa aaataggact tttattttct
     8161 gagattaaaa ccaaatttgt agaatttgaa gatgaagatg cttttttaaa tcttaatttt
     8221 tatgaagaat atgaaaaatt taaaagcaag ttaaaatgag aaaaattgct ttatttttaa
     8281 gcttatgcgt ttttatatgg gctagtgatt tacaacaagc tttagagtat gaaaaacaag
     8341 gcgattataa aaaagctatg gaaatttaca aaaaactcgc tttaaaaaat tcatctgttt
     8401 tgatttctca agaacaaaat aactcaagcg aagcaacaca aatgcaaaat tctatcacta
     8461 taaaaaaaga agaaaaacaa gacttttctc gcttagcttt ggctaattat cttggtgaaa
     8521 atgaaagttt taatcccctt ggcattagct cttacaagat gaattatttt ttaccttttg
     8581 cttatagttt taattcttta ggaacaaata ataataagag tgaggcgaaa tttcaactta
     8641 gtgttaaaaa aagacttttt gaaaatttac taggactaga tgaaaaatat tatatagcct
     8701 atactcaaac ttcttggtgg caaatttata agcattcttc tccttttaga gaaaccaact
     8761 atcaaccaga attttttata gatcttcctt tatatcttaa agattatgaa ttttttaaca
     8821 atctacgcgt aggtatattg catgaaagca atggcaaggg agatgagaat ttacaatctc
     8881 gctcatggaa tagaatttat gtatctactg ctattttata taataaattt ttatttgttc
     8941 cacgcctttg gtatagaatt cctgaaaaca aaaaagatga tgataatcct gccatcttgc
     9001 attatatggg aaattttgat gtgaatttag cgtatttagg tgatgattat tttatcaatc
     9061 ttatgctaag aaataatctt aaattccaca ataataaagg cgctatacaa gttgatctag
     9121 gatatgatat ttttaataac ggaatttatt ggtatttaca atactttaat ggctatggag
     9181 aaagccttat agactataac aaacacttac aaagactttc cactggattt ttgatttctt
     9241 actaaaatat cctttgtagt tttatcattt cttaaaacaa atttcattac aatttcattt
     9301 ttgataatta ttattactat aaggaaagat ttgtttttta agcatatatt gagtttaaaa
     9361 gtgcttatag ctttactttt attctttgga atgataagtt tatttatagg agttatcagt
     9421 atcaatgtaa aagatattct taatcttaac tccactcaac tagaaatcat aactctcaca
     9481 agaattccta gacttatagc gattttactc acaggaatga gtcttagtat atgcgggctt
     9541 atcatgcaac aactcacgca aaataaattc gtttctccaa ctacggcagg aactatggat
     9601 tgtgctaaat ttggcatact tatttcttta atattttttg ctggagcgtc tttttttact
     9661 caaactatca ttgcttctgt atttgcactt ttgggttctt ttatatttat ccaaatttta
     9721 agaaaaatca aactcaaaga tgtgattttt gtacctttga taggcttgat gtttggaggc
     9781 attattagtg ctataaccac tttttttgcc tatgctttaa attatataca aaatatccaa
     9841 ggctggttac aaggcagtat ggcaaatgtt atgcaaggaa attatgaatt actttacatt
     9901 tctttgccac tttttatact tgcttatttt ttagctcata aaattaccat agttggcatg
     9961 ggtgaagata tagctttaaa tcttggaatt tcttataatg ggatattatt tttaggcttg
    10021 atgattgtaa gcgttatcac tagcttagtg attgtaagcg ttggaattat ccctttttta
    10081 gggctaatta tcccaaattt agtagctctt tatctaggtg ataatcttag aaaaaatctt
    10141 atctatatag cactttgtgg agctttgttt ttacttgttt gcgatatcat ttcaagactt
    10201 gtcatctttc cttttgaaat gcctttaagt atcactacag gtgttttagg atctttaatc
    10261 tttatctttc ttttgctaaa aaggaaagtt tatgcgtaaa aaaatgctga ttttaagctt
    10321 tttaacactt ggtatgatag ggatttttat acttgtgggt ttaaatggct ttgatgagta
    10381 tgccttaaaa agtcgttttt tacaaattgc agctattatc atagtagcta tttgtatcgc
    10441 tgtttcaaca gtgatttttc aaactttatg caataacaaa attctaaccc ctgctatcat
    10501 aggattagat tctttatata tgttgcttca aagtgctctt atcttttctt ttggtgcggc
    10561 taatttaagt gtttataaaa acgatatcaa ttttttaatc actctagttt gtatggtggt
    10621 tttttcacta ggactttata aaattttatt tagtagtgat agaagtattt atcttatcat
    10681 gcttttaggc ttagtttttg ggacactttt tagcacttta agctcttttt ttgaagtgct
    10741 aatcgaccct gatgaattca tggtaataca aggaagaatg tttgctagtt ttgataatat
    10801 tgcttttgat gttttaattc ttgcttatat tattagcttt ttaagtttta tatggatttt
    10861 tcgctatatg aaatttttag atcctttaaa tttaggcaaa gatttagcga taaatttagg
    10921 gataaattat caaaaaattt caaaacaatt gatgattatc atagctattt taacttctat
    10981 tagcaccgca cttgtaggtc ctataacctt tttaggactt ttagtagtaa atatcactta
    11041 tgagctattt aaaactgcaa agcatagtat tttgctaagc gcttgtatac ttattagtat
    11101 tttggctttg cttggagggg tgttttttgt ctctagagtt tttgattata atgccactat
    11161 aagcgtggtt attaatttct taggtgggat atattttatc tatcttgtat taaagggtaa
    11221 taaattatga ttaaactaaa aaatatcacc aaattttatg ataataaagt cattatttca
    11281 gatcttagcc ttgattttca taaaggcaaa atcacttcta taataggagc caatggcgct
    11341 ggaaaatcca ctcttttagc tctagcaagt cgtttgataa aacctagtag tggagaaatt
    11401 tatatcgatg gaatgaattt aaaaaattat aaagagcaaa tcttagcaca aaaaatttcc
    11461 attctcaaac aacaaaacaa tatcaattta agattaaaag ttgaagaatt agtcgctttt
    11521 gggcgttttc cgcattctca aggaagattt aatacaaacg ataaaatcaa aatcaatgaa
    11581 gctttagaat acatggaact tagcaactta agaaatgatt ttttagatac attaagcggg
    11641 ggacaaaagc aaagagcttt tatagccatg atcatcgctc aggatactga atttataatg
    11701 tttgatgaac ctttgaacaa tcttgatatg aagcatagcg tacaaatcat gcaactaatg
    11761 aaaaatttag tcaaagactt taacaaaagt atagctgttg tattacatga tattaatttt
    11821 gcttcgattt attctgatga aatcatagcc ttaaaagatg ggaagctttt aaaacaaggc
    11881 tcaaaagatg aaatcatcaa tcaagaaaat ttaaaacaaa tttatgatat ggatataccc
    11941 gtaagtcaaa ttaatggtaa gaaaatttgt atttattttt aaaaaggaga aaatatgaaa
    12001 aaatctttaa tttttgcatt ttttgcattt tttttaagtc taatcttaac agcttgtaat
    12061 tcaaactcaa atgaaaacaa cgcaagttct acaacaaaaa ccaacactgc tacggtgaaa
    12121 gttttgccta ttagcatgag tgatgagggt gatagttttt tagtgaagga tagtctagga
    12181 gaaaataaaa tccctaaaaa tccttctaag gtagtgatct tagatcttgg aattttagat
    12241 acttttgatg ctttaaaatt aaatgataaa gtcgttggcg ttcctgctaa aaatttacca
    12301 aaatacctac aacaatttaa aaacaaacct agtgtaggtg gagtacaaca agttgatttt
    12361 gaagccatta atgctctaaa acctgatctt attatcattt ctggacgcca aagtaaattt
    12421 tatgacaaat taaaagaaat agctccaact ttatttgtag gtcttgataa tgcaaatttt
    12481 ttaagctctt ttgaaaataa tgtcttaagc gttgcaaaac tttatggttt agaaaaagaa
    12541 gctttggaaa aaatttcaga tattaaaaat gaaattgaaa aagccaaaag tatagttgat
    12601 gaagataaaa aagctcttat tattcttaca aattctaaca aaatttcagc ctttggtcct
    12661 caatctcgct ttgggattat tcacgatgtt ttagggatta acgcagtaga tgagaatata
    12721 aaagtaggca cacacggcaa aagtatcaat tctgaattta tactagaaaa aaatcctgat
    12781 tatatttttg ttattgatag aaatatcatt gtaggcaaca aagaacgcgc tcaaggcata
    12841 ctcgataatg cgcttgtcgc taaaaccaaa gcagcacaaa acaaaaaaat tatctatctt
    12901 gatccagaat actggtattt agcaagtgga aatggactag agtctttaaa aactatgatt
    12961 ttagaaatca aaaacgctgt aaaataatat aacttcgcaa gggctagtct cttgcttcga
    13021 tacctaataa aatacttggg attttcaaga aagttttagt ggcggacaga gagggatttg
    13081 aaccctcgag acccgttaag atctgcaccc ttagcagggg tgtggtttca gccgctcacc
    13141 catctgtcca ataaaagtaa agtgtgatta tacaaaaaaa taaataatac ctagcttaaa
    13201 aagctaggaa aaatcaaagg ctaagataag ccaaaagcaa agttacaaca acccctactc
    13261 caagaactgc aaattgttta cttctatctt ttttatttgc aaacaaagta atcataagcc
    13321 ctgaaatata aagcataaat aaagtaatac caaagcctac gctaagcaca gaaaaatacc
    13381 aagcaccctt atctttatga agcataatca tatctccaag taaagatctt gtttttaagg
    13441 taatattgta ttcattagta gaattttgag ttatattagc actataatga gttccaccta
    13501 ttgttatacc tttatcttta cttttaatta tatttgtatt agatggtact tttaaaccat
    13561 ttgtttttaa atactctatt aaagcttctc tttctttacc actttctata acttttgaca
    13621 attgatactg ctcaactttt aagcccacat cttgattaat accaaaaata tacgctatac
    13681 ccgttaaagc aaaaagcaaa gcacaaggca agaaaaacaa actaagatag atatgaacct
    13741 gtctaaacaa tttattttta ttgatcattt taactccttt ttgattatca aaatttgtga
    13801 tattttgaca aaacaaagtg aagcaaaagt gaatttcaaa taaaaagttt atatttttta
    13861 aaataaaaaa agaaaaagcc ctatgattta tagggcttaa gaattatttt ttatcaatca
    13921 cttgataatt ataaggagcg agctctttat catgctctaa aagttctttt ggaggattgc
    13981 cattaacatc tttttcatct gcatagtaac gctctccagc tttatgatta ttaacatcta
    14041 ctttataata aagctctcct ggattaaatt tttgaatatc ttcaaaacct aaatttgaag
    14101 ttttaaaatc tttaattcca tttgccgctg caatttctac aagtttagtt tgtcccattc
    14161 ttgccatatc aacagcttgc aataacattc ttgaagcttc gcgaggatta tggaaaccag
    14221 ttgagttttc agcattaaca aaatccgctc tcatttgagc tttacgatga agttctaaaa
    14281 cttcttttag ctcttcgcta atttttttcg catcagcttt tccatcgctt tggaattttt
    14341 ccatattgcc tagttcatcg cgtaattttt tagtatccat aatcaaacta acaattgcat
    14401 actctgcagt tctttgatca tgtgcaacgc tgttttgtat gtcaagcact tgagctttta
    14461 aataatcttc actttgttta tgacaagact tacaagcaga gttaatatct cttaaaggag
    14521 aagtgatatt gtgttgagta acctttttag ctccttctct aacataaggc atatgacaat
    14581 ccacgcaact tactccattt gcagcatgca caccgccact ataaagttca ctttctgggt
    14641 gttgaatttt aataatttgt gcccctgtta atttatgagt aaaatcagct ccaaatactc
    14701 cacgaacttt atcataataa tcatctaaca tttcaattct aaatggttgc ccttttttcc
    14761 actcactcca aggaaaagtt aaaactatac catcggtttc aatctcttta gctttattac
    14821 catctctcca aaattcatac tcatcataat ttttctgagt tccattccac cattttttag
    14881 aactatcatc tacaatagtt tcacccatta cttttacttt ttcccctgtt ggtttaaaat
    14941 agtattcaac atggcattga gagcaaacta aagttctcat ttcttctctt gtagctttta
    15001 cgccttgcac tggatctttt tcatatcctc tagaaactaa agcattaata gctgctggac
    15061 gagtaagtct taaactcata tcatttggat tgtgacaatc tgcacaagtt acacccattc
    15121 ttttaccacc atgtggacct gcatgttcag gtgaattttc cactatacca tcaacggctg
    15181 ggatattttt aatcatagtc caataatttg tagagttaaa agcagtaaaa tctcctttag
    15241 caacattttt tataagccat ggagtccatc cactatgaca attcatacaa gctgcgggct
    15301 ggcctttaaa agcagcaagg ccgtgagcat taagaaaatc tttgttgttt cttgctgttt
    15361 tcatttgatc tacttgaacc caaaaatgcc ctctttcttc attgaaatca agactaaaag
    15421 gatatcctgc ccaaagtatg gttaattgag gaaagcgaat taattttgaa taagctaaat
    15481 taccaccaaa ttcagtagcc ttaggttctt ctttttcaac cgttaaatac atttttagtt
    15541 gctctggaaa aaccttaccc catttttcaa aatttggatc atcatcacta agcaaagaaa
    15601 aatcagcatt tgctgcaatg gcatttttat ttgcttcatc ttcttttttt tgattgatat
    15661 cattatttag ccataaaact cccgctataa gtaaaaccaa aacgacaata cctaagcgta
    15721 aaatattttt tttcattcat cttctcctta ttaaattccg tgtttatgtc caacatcttt
    15781 atgacaagaa gcacaattta atgacttgtc tgcatgtgga tttgttgtag cattgatagc
    15841 tgtttgagca aaatctgcat gacagcgtat gcagttttct tgcaccattt ttctgctttt
    15901 ttcagtcgca ctcaaatttg taggcaactc atcaagttta aaagtaaaag cataagcatg
    15961 tcctaaacca ctttgcgctt tagctatcca cttagctaca aaattatgtg gcaaatgaca
    16021 atccacacaa gttgctcttg gttcgccttt gactttttga gagtgtggtc ctgccatgta
    16081 ttcgctataa acttcattca taatatggca gttattacaa gattcacttg cattgcttaa
    16141 ataagatgtg cccttagcgt tataaaaagt ataaaaccca accgcaaaga aaacaaaaag
    16201 caaaacaaga aaaatagtaa aaagattcga agttttcttc aaaattttcc tccttaaaat
    16261 tatcatttct taaaatcttc aatgaaacaa caatgtcaca gaatttccca gaaataaatt
    16321 ttttaatttt aacatagat
//
LOCUS       DBBXPZ010000037        16323 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.039, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000037 DBBXPZ010000000
VERSION     DBBXPZ010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16323)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16323)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16323
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.039"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            69..1163
                     /gene="lpxB"
                     /locus_tag="ACJFD7_000961"
     CDS             69..1163
                     /gene="lpxB"
                     /locus_tag="ACJFD7_000961"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008915 - lipid-A-disaccharide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HGG0859781.1"
                     /translation="MKTFLVCALEPSANLHLKEVLKAYKKDFGEFELHGIYDESLCKE
                     FDLNSKPLYSSHEFSAMGFIEVLPLIFKAKKAIKELVNLTLSQTMDAVLCIDSPAFNI
                     PFAKALKKAGSKIPRIYYILPQVWAWKKGRIPIIESHFDILASILPFDNQFFNKSTYI
                     GHPLLDEIKEFKNQEDINHTFSKKDDEKTIAFLPGSRRSEIRRLMPIFKELSQKFKGE
                     KILCVPSFNLEKLEVYGDISEFKIESNTPKVLKKADFAFICSGTATLEAALVGTPFVL
                     AYKAKAIDIFIAKLFVKLKHIGLANIFCDFAGKEALNPEFLQDKVNVLNLYEAYNKYD
                     YKAFFAKVDFLKEYLQFGSAKNLAKILNEI"
     gene            1175..1660
                     /gene="greA"
                     /locus_tag="ACJFD7_000962"
     CDS             1175..1660
                     /gene="greA"
                     /locus_tag="ACJFD7_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HGG0859782.1"
                     /translation="MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKE
                     NAEYHAAREKQALIESRIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKES
                     KYTLVGICEGNLDKGYISIASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINYEPLK
                     F"
     gene            1670..2428
                     /locus_tag="ACJFD7_000963"
     CDS             1670..2428
                     /locus_tag="ACJFD7_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012662069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HGG0859783.1"
                     /translation="MLLQNGAILIADAHENEQRKGFWEFLQALKKGKISTPQLILMGD
                     IFDLLIGEISATHEFAKPYIELLEELALKIEIIYLEGNHDFNLSCFFKRVKIFNLQEQ
                     PIKLNLHTSKGNNLVLNNAFIKLAHGDIFLPPLLQFTLKTLRNHYLLVFLNFLNIITR
                     NFISNKILQNQNKKNLFYQIKDFENLAKKRYEKYENLGFWVCEGHYHQNHQINKENIK
                     YLNLASFAYKRSFFVVEYQQEIKFREQKLRGQNV"
     gene            2421..3377
                     /gene="cheV"
                     /locus_tag="ACJFD7_000964"
     CDS             2421..3377
                     /gene="cheV"
                     /locus_tag="ACJFD7_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HGG0859784.1"
                     /translation="MFDENIVKTGSNEMELVDFRIFKQGHDKVYEGIYGVNVSKVREI
                     IKIPSLTELPGVPDYIEGIFDLRGVVIPVVNLAKWMQITEPESTMLKPRVIITEFSNI
                     LIGFIVHEAKRIRRINWKDIEPATFSTGSGALDKGKITGVTRIENDEVLLILDLESVV
                     EDLGIYAPKTDIDFGKIEKFTGTALILDDSMTARKRVKEMMQQMGFQVVEAKDGVEGI
                     NKLEELSQIYGESLNDTLKIIVSDVEMPQMDGFHFAARIKEDPRFKDIPIVFNSSLSN
                     EFMNEKGVQEAGGEGYLVKFNASDFFNEIAKVIKKHQSQEQG"
     gene            3381..5690
                     /gene="cheA"
                     /locus_tag="ACJFD7_000965"
     CDS             3381..5690
                     /gene="cheA"
                     /locus_tag="ACJFD7_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HGG0859785.1"
                     /translation="MEDMQEILEDFLVEAFELVEQIDHDLVELESNPEDLELLNRIFR
                     VAHTVKGSSSFLNFDVLTKLTHHMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLN
                     SIRDNGNDTAIGMDIEPICARLTAISEGESPVVATDSNEKSTPQAELEAPKQEIATPE
                     PEVDVNQLSDSEVEAEIERLLKVRKAEDQARRAQKKQTTNAAPKPTNNTANKPTESGE
                     KKVPASGSNASSMDQTIRVEVKRLDHLMNLIGELVLGKNRLLKIYDDVEERYEGEKFL
                     EELNQVVSQLSIITTDVQLAVMKTRMQPIAKVFNKFPRVVRDLSRELGKQIELEITGE
                     ETELDKSIVEEIGDPIMHMIRNSCDHGVEDPATRAANGKPEKGIVQLKAYNEGNHIVV
                     EITDDGKGLDPNGLKAKAIEKNLITEREADQMTDKEAFALIFKPGFSTAAKVTNVSGR
                     GVGMDVVKTNIEKLNGVIEIDSELGKGSSFKLKIPLTLAIIQSLLVGTQEEFYAIPLA
                     SVLETVRVPIDDIYTIEGKNVLRLRDEVLSLVRLSDVFGVKQVLESGDQTYVVVIGVA
                     ESKLGIIVDTLVGQEEIVIKSMGDYLQNIQGIAGATIRGDGRVTLIIDVGAMMDMAKE
                     IKVDIKAQLESSAKKPKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEA
                     LNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRG
                     VEVGMTEYITKPYSPEYLENVVRKNLKLG"
     gene            5695..6216
                     /gene="cheW"
                     /locus_tag="ACJFD7_000966"
     CDS             5695..6216
                     /gene="cheW"
                     /locus_tag="ACJFD7_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HGG0859786.1"
                     /translation="MSNEKLEQILQKQQTQMAGPDVDQREDDIIQLVGFVVGDEEYAI
                     PILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFHLGSSKMTPQTRYI
                     VLRGETNGTGVGGNAGFVIDRLTEAIKIHRNRIDPPPETLVKDKGMIYGIGKRDENIL
                     TILKVEALLKREF"
     gene            6216..6839
                     /gene="serB"
                     /locus_tag="ACJFD7_000967"
     CDS             6216..6839
                     /gene="serB"
                     /locus_tag="ACJFD7_000967"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036424 - L-phosphoserine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HGG0859787.1"
                     /translation="MIKLCVFDFDATLMDGETIDILATAHGKGNQTSEITRHAMTGEL
                     DFFESLQKRVSFLKGMSYKKVLELSSTLPLMRGAHELIQYLKSKNIQIVIFSGGFHEG
                     INPAMQKLGINLGFANYLHHKNDILTGLVGGEMMFSNSKGLMLQRLKSFLNLKTDEVM
                     CVGDGANDLAMFNESGLKIAFCAKEILRSQADICIDIKDLKEIIKVI"
     gene            6839..7816
                     /gene="tal"
                     /locus_tag="ACJFD7_000968"
     CDS             6839..7816
                     /gene="tal"
                     /locus_tag="ACJFD7_000968"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HGG0859788.1"
                     /translation="MKNFSLWCDFIENSFLDNEFLNLLSHGINGATSNPAIFKNAILN
                     SPIYKDKILKLKEKKTKDIYEELAISDIQKAADKLAPLFYQKNDGFISIEIDPRLHDN
                     TTLSLGEAKRLYSAISKENVMIKIPATKASYEVMYELMKNGISVNATLIFSLEQSQKC
                     FEALNAGLVEFRKNNIALKEQNTRTPQAVISIFVSRFDRLLNPKAKEQNRIGILNANL
                     AYNNIYSKNEPNIRALFASTGVKGDDLPKDYYIKELLFENSVNTAPLDAIEAFKGKMH
                     FKKPLMNFEIYTELNQIISQNEREKACNDLLSDGLEQFCIAFEDILKAL"
     gene            complement(7817..8239)
                     /locus_tag="ACJFD7_000969"
     CDS             complement(7817..8239)
                     /locus_tag="ACJFD7_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5 YciO YrdC YwlC family protein"
                     /protein_id="HGG0859789.1"
                     /translation="MIYLAQTDTTVGFLSKNLEEINALKGRDKNQPCLITSAKFYELK
                     SLARIPKSFKNLVRRSKKTTFIYPNNQAIRIVKECKHANFLSKNGYFYSSSANKHGKE
                     FDEEWARSVADIILDEKFFENIPSKILKLSKNKMIKIR"
     gene            complement(8236..11505)
                     /gene="carB"
                     /locus_tag="ACJFD7_000970"
     CDS             complement(8236..11505)
                     /gene="carB"
                     /locus_tag="ACJFD7_000970"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HGG0859790.1"
                     /translation="MPKRTDIKSILLIGSGPIVIGQACEFDYSGTQAAKTLKELGYRV
                     VLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILPTMGGQVALNVAMEV
                     YESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAYNYDEALKAVDEI
                     GFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESLLGWKEYEMEV
                     IRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFAILREIGVD
                     TGGSNVQFAINSKNGRMIVIEMNPRVSRSSALASKATGYPIAKVATLLAVGFSLDEIK
                     NDITGTPASFEPVIDYIVTKIPRFTFEKFPGANTTLGTAMKSVGEVMAIGRTFKESIQ
                     KALCSLERSLSGFDRVKFEDRNDLVFKIRNANEKRLLYVAQAFREGFSVEELYELCKI
                     DPWFLTQIKEIVDFEEQIDMDILNNKALLRKAKTMGFSDKMIALLVNLKDNLELSQND
                     IYYARMKQKIIAEFSEVDTCAGEFEALTPYLYSSINVSELTQSKNDAKDKKEKKVMII
                     GGGPNRIGQGIEFDYACVHASFALKDMGIKTIMYNCNPETVSTDYDTSDILYFEPIDF
                     EHLRAVIEREKPDGVIVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDVAEDRKKFAEF
                     ITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAELRLYMQ
                     EAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSGDSACSLP
                     PCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFALHNNELYMIEVNPRASRTVPFVSK
                     ATGIPLAKVATRVMWQGNLKEALKFYDTFKVVNFDTKILRPKTPKYMSVKEAVFPFAK
                     LSGSDLELGPEMRSTGEVMGISKDFANSYAKSQIASFNHLPEQGVVFISLKDKDKKYT
                     KKIAAEYVKLGFKLMATGGTCKEILESGFECELVHKISEGRPNVEDKLKNGEIHLVIN
                     TSDSHSFKGDTKKIRENIIRFKIPYFTNLRSALAGAKSIKAIQSKSCLDVKSLQEWLK
                     S"
     gene            11783..12805
                     /locus_tag="ACJFD7_000971"
     CDS             11783..12805
                     /locus_tag="ACJFD7_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032591053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element ISCaje5 family transposase"
                     /protein_id="HGG0859791.1"
                     /translation="MATSNAELEIVKQLFSTLSDDDKKSFLKSIKNKEKSEQNLILSK
                     EIKACPHCKSTNFVKNGKKDGKQRFMCMDCHKTFTVTNNSIFFKTQKDLEIWQKYIHC
                     MIEKYSLRKTAEICGIALSTAFFWRHKILDTLQKMQDEVKLNGIVEADETFMPISYKG
                     HHKDFNFPRLAKKRGTANTKRGLSKELVCIPCVVNLNGKSIAKISNLGKPNIASLSKV
                     IQGKVEKESVFVTDSLRSYLKLSNEMSLNHIRIPRNKHSNGSFNIQVVNNYHSRLKSM
                     LVYNFKGVATKYLNNYLVYHNFVNFAKESRKDKEQILLNHILNTNCISQSISVANRPA
                     VPLLVA"
     gene            12835..13743
                     /locus_tag="ACJFD7_000972"
     CDS             12835..13743
                     /locus_tag="ACJFD7_000972"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HGG0859792.1"
                     /translation="MSYKKYLNNVTLGDCCELMKNIPNNYISGCITDPPYNYEFFGRN
                     WDNVEIKRRKNKANNNKNILVKNIPYGSGLAGGVKNERWYKKNRDNILEYQSWVEHWG
                     KELYRILKPGAFIMVFNSNRSVAHIQIALENVGFYTKDMFIWIRNSGIPKGLNAYEKM
                     KKDGYELAENWKGWHSATRNNYEAVSVLQKPIENNYVNNVKKYGVGLLKTEGYINHNG
                     FLSNIFEGYQRDKKDDFNKHITVKPIKLIEKLAEMIVPKQTNNIIIDPFMGSGTTALA
                     CKNLGIPYIGFELNEEYIKIANMRLS"
     gene            complement(13740..14306)
                     /locus_tag="ACJFD7_000973"
     CDS             complement(13740..14306)
                     /locus_tag="ACJFD7_000973"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859793.1"
                     /translation="MMNIVIEQIERNVIDILSQYKSNFKSKKFDTIVSDSDILMDFFN
                     ITYETKMQNMQYWNRELGRVWELITKELFTSNNLFKPPESVDFGTDHPVDYFIGNLAI
                     DAKYRIGSGDSGTLKKFKLYGKMLKEMGYNPVFLILRNDNLPAAITAAINGGWEIISD
                     KDAFDFIINYGGIDIVQYLACLKAKYDF"
     gene            complement(14303..14509)
                     /locus_tag="ACJFD7_000974"
     CDS             complement(14303..14509)
                     /locus_tag="ACJFD7_000974"
                     /inference="COORDINATES: protein motif:HMM:NF013540.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HGG0859794.1"
                     /translation="MISILNIFVKNVRKRRQALNITQEKLAELSSLHRTYIGSIERCE
                     KNITLINAYKIAKALGADLSELLK"
     gene            14803..14985
                     /locus_tag="ACJFD7_000975"
     CDS             14803..14985
                     /locus_tag="ACJFD7_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HGG0859795.1"
                     /translation="MQDTNKDFLTIQEVITLYSLSKDTQNKYRMQKKIPYIKIGKKIF
                     YEKVKLDEWFKNHTIN"
     gene            14996..15241
                     /locus_tag="ACJFD7_000976"
     CDS             14996..15241
                     /locus_tag="ACJFD7_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859796.1"
                     /translation="MNNKQALEYLKSELCFIFNTRFRYFDFEIFNLLEKKIQILQKLP
                     DFEREIKELLAILESNKKLFLKKNTFIKKEQKRQILL"
     gene            15293..>16323
                     /locus_tag="ACJFD7_000977"
     CDS             15293..>16323
                     /locus_tag="ACJFD7_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859797.1"
                     /translation="MSISLFNDEIKAYIKNYYSIVDFLYLRYGLEFDKAGNERHNKSL
                     KIKTNTCLITDFNGSFSGDIIDFIAFKENVELKEALIIFSDFNRLPTQKVGSFKPQKE
                     PLKDNSYLKNIAYSLQANFNLANSDFIECKALEKAFFNDFRLFMHLCKLNFLKDDEFE
                     SILKDYFAFSKDDKSLAFILKDKNEIKSVAIREKLFKNELVKWFKVKGSSNKFIKLIK
                     AKEKGLLKDYCFIFSGIKEIIVSELLGLNAVCFQSDSMMKNIHSHEQINELLNLIDNK
                     RIVFIVENDESSFKANLELLKELIQINPLEKGYCVFNYDEVKNADFIDFLAYLMKELR
                     QDYQRDKKG"
BASE COUNT         6000 a         2431 c         2634 g         5258 t
ORIGIN      
        1 aaaaataaaa attatgtttc agatgagcta aaagattttg ttaaatcaaa catagaagat
       61 attttcaaat gaaaaccttt ttagtttgtg ctttagaacc ttcagcaaat ttgcatttaa
      121 aagaagtttt aaaagcttat aaaaaagatt ttggtgaatt tgaacttcat gggatttatg
      181 atgagagttt atgtaaggaa tttgatttaa attctaaacc actttatagc tcacatgaat
      241 ttagtgctat gggttttata gaagttttac ctttgatttt caaagcaaaa aaagcgatca
      301 aagaattagt gaatctaact ttaagccaaa caatggacgc agttttatgt atcgattctc
      361 ccgcttttaa tatccctttt gccaaggctt taaaaaaagc aggcagtaaa attccacgca
      421 tttattatat cttgcctcaa gtttgggcgt ggaaaaaagg tcgcatacct atcatagaaa
      481 gtcattttga tattttagct tctattttgc cctttgataa tcaatttttt aacaaaagca
      541 cctatatagg ccatccgctt ttagatgaga taaaagaatt taaaaatcaa gaagatatta
      601 atcatacatt ttcaaaaaaa gatgatgaaa aaactatagc ctttttacca ggttcaaggc
      661 gtagtgaaat taggcgttta atgcctattt ttaaagaact ttctcaaaaa tttaagggtg
      721 aaaaaattct ttgcgttccc tcatttaatc ttgaaaaatt agaagtttat ggtgatatta
      781 gcgaatttaa gatagaaagt aacactccaa aagtgcttaa aaaagctgat tttgccttta
      841 tttgtagtgg aacagctact ttagaagcag ctttagtggg aactcctttt gttcttgctt
      901 ataaggcaaa ggctatcgat atttttatcg caaaactttt tgtaaaatta aaacatatag
      961 gacttgcaaa tattttttgt gatttcgctg gaaaagaagc tttaaatcct gaatttttac
     1021 aagataaagt caatgtttta aatttatatg aagcttacaa taaatatgat tataaggcat
     1081 tttttgctaa agttgatttt ttaaaagaat atttacaatt tggaagtgct aaaaatttag
     1141 caaaaatcct aaacgaaata taaaaggata aatcatgcaa aaagaaccaa tgagtcaatt
     1201 tggctatgat aagttagccg cagaattaaa agatttaaaa gacaatcaac gccctgccgt
     1261 tgtaatagaa atcgatacag caagaagtca tggggatttg aaagaaaatg ctgaatacca
     1321 tgctgcaaga gaaaagcaag ctttgataga aagtcgtatt gcagagctta gtgacttgct
     1381 agcaagagct caagtgatcg atccttcaag ctatgagcac gatagtgtga aatttggttc
     1441 aagtgttgtg atcatggatt tggatacaga aaaagaaagc aaatatactc tagtaggaat
     1501 ttgcgaagga aatttagata agggttatat ttccatcgca tctccaatag caaaagctat
     1561 gcttggaaaa aaagaaggag atgattttaa agtgcgtttg ccaaaaggtg aaagtgaatt
     1621 tgaaatcctt tctataaatt atgagccttt gaaattttaa ggataaaaaa ttttactaca
     1681 aaatggagcg attttaatcg cagatgctca tgaaaatgaa caaagaaagg gattttggga
     1741 atttttacaa gccttaaaaa aaggtaaaat ttccacccct caactcatac ttatgggtga
     1801 tattttcgat ttgcttatag gcgaaatctc tgctacacat gaatttgcta aaccttacat
     1861 agaactttta gaagaattgg ccttaaaaat tgaaattatc tacttagaag gcaatcatga
     1921 ttttaatctt tcttgttttt ttaaaagggt aaaaattttt aacttacaag agcagcccat
     1981 aaagcttaat ttgcatacaa gtaaaggtaa taatcttgtt ttaaataatg cttttataaa
     2041 attagctcac ggagatattt ttttaccacc tcttttacaa tttactctga aaacattaag
     2101 aaatcattat ttgcttgtat ttttgaattt tttaaatatt attactcgta attttatttc
     2161 aaataaaatt cttcaaaatc aaaacaaaaa aaaccttttt tatcaaataa aagattttga
     2221 aaatttagcg aaaaaaagat atgaaaaata tgaaaattta ggattttggg tatgtgaagg
     2281 acactatcat caaaatcatc aaatcaacaa agaaaacatt aaatatctta acttagctag
     2341 ttttgcatat aagagaagtt tttttgtagt agaatatcag caagaaatca aatttcgaga
     2401 acagaaattg aggggtcaaa atgtttgatg aaaatatcgt gaaaacgggt tcaaatgaaa
     2461 tggagcttgt cgatttccgt atctttaagc aagggcacga taaagtctat gaaggaattt
     2521 atggtgtaaa tgtttctaag gtaagggaga ttataaaaat cccaagcctt acagaacttc
     2581 caggtgtacc tgattacatc gaaggtatct ttgatcttcg tggagtggtt atacctgtag
     2641 tcaatcttgc caaatggatg caaatcactg agccagaaag cactatgcta aaacctagag
     2701 ttattattac tgaatttagc aatattctta ttggttttat agttcacgaa gcaaaaagaa
     2761 ttcgtagaat aaactggaaa gatatagaac cagcaacttt ttctacagga tcaggtgctt
     2821 tagataaagg taaaattaca ggtgtaacac gcattgaaaa tgatgaagtg ttgctaattt
     2881 tagatcttga aagtgttgtt gaagatttag gaatttacgc tccaaaaaca gatatagatt
     2941 ttggaaaaat agaaaaattt actggaacag cacttatact tgatgacagc atgactgcta
     3001 gaaaacgcgt caaagaaatg atgcaacaga tgggctttca agttgttgaa gctaaggacg
     3061 gcgtagaggg cataaacaaa ttagaagaat taagccaaat ttatggtgaa agtttaaacg
     3121 atactttaaa aattatagta agcgatgtcg aaatgccaca aatggatggt ttccactttg
     3181 ctgcacgcat taaagaagat ccaagattta aagatattcc tatagtcttt aactcatctt
     3241 tatcaaatga atttatgaat gagaaaggtg ttcaagaagc tggtggagaa ggctatcttg
     3301 tcaaatttaa cgctagcgat ttcttcaatg aaattgcaaa ggttattaaa aaacatcaat
     3361 ctcaagaaca ggggtaaaat atggaagata tgcaagaaat acttgaagac tttttggttg
     3421 aagcttttga gcttgttgag caaatcgacc atgatttagt agagcttgaa tcaaatccag
     3481 aagatttaga attattaaat agaattttcc gtgttgcaca tacggttaaa ggatcatcaa
     3541 gcttcttaaa ttttgatgtt ttaacaaagt taactcacca catggaggat gttttaaaca
     3601 aagcaagaca tggcgagtta aaaataactc cagatatcat ggatgtggtt ttagagtcta
     3661 ttgatagaat gaaaacttta cttaattcca ttcgtgataa tggcaacgat actgctattg
     3721 gtatggatat agaaccaatt tgcgcaagat taacagctat ttcagaggga gagtctcctg
     3781 ttgtggcaac agattcaaat gaaaaatcta ctccacaagc agaactagaa gcaccaaaac
     3841 aagaaatagc tactccagaa cctgaagtag atgttaatca attaagtgat tctgaagttg
     3901 aagctgaaat agaaagactt ttaaaagtta gaaaagctga agatcaagct cgtcgcgcac
     3961 aaaagaaaca aacaacaaat gcggcaccta aaccgactaa caatacagca aataaaccta
     4021 cggaaagtgg agagaaaaaa gttcctgctt caggtagtaa tgctagcagt atggatcaaa
     4081 ccatacgcgt ggaggtaaaa agattagatc acttaatgaa tctaattggg gagcttgttt
     4141 taggcaaaaa ccgtttgctt aaaatttacg atgatgttga agagcgttat gaaggagaaa
     4201 aattccttga agaacttaat caggttgtaa gtcaattaag tattattaca actgatgttc
     4261 agcttgctgt gatgaaaaca agaatgcaac ctatagcaaa agttttcaat aaattcccaa
     4321 gagttgttcg tgatttaagt cgtgaattag gaaagcaaat agaacttgaa attacaggtg
     4381 aagaaactga acttgataaa tctatcgtag aggaaattgg cgatcctatc atgcatatga
     4441 ttagaaattc atgtgatcat ggtgttgagg atccagcaac tcgtgcagcg aatggaaaac
     4501 ctgaaaaagg tatagtccaa cttaaagctt ataatgaggg caatcacatc gttgtagaaa
     4561 ttacagatga cggtaaagga cttgatccaa atggcttaaa agcaaaagct atagagaaaa
     4621 atttgattac cgaaagagaa gcagatcaaa tgacagacaa agaagctttt gctttgattt
     4681 tcaagcctgg tttttcaact gcggctaaag taacaaatgt ttcaggtcgt ggcgtaggaa
     4741 tggatgttgt taaaaccaac atcgaaaaac ttaatggggt aattgaaatt gatagtgagt
     4801 taggtaaagg aagttcattt aaacttaaaa ttcctcttac cttggcaatc attcaatctt
     4861 tacttgtagg aactcaagag gaattctatg caattccact tgcaagcgtt cttgaaacag
     4921 ttagagtgcc aatcgatgat atctatacta tcgaaggtaa aaatgtatta cgcttaagag
     4981 atgaagtgct ttctcttgtg agactttcag atgtatttgg agttaaacaa gtccttgaaa
     5041 gcggtgatca aacttatgtc gttgttatag gggtagcaga aagcaagctt ggtattatag
     5101 tagatactct tgtaggacaa gaagaaatag ttattaaatc catgggtgat tatttacaaa
     5161 atatccaagg tatagcagga gctacaatcc gtggtgatgg tagggtgaca ttaatcattg
     5221 atgtaggcgc tatgatggat atggccaaag aaattaaagt tgatattaaa gcgcaattag
     5281 aatcaagtgc gaaaaaacct aaagaacaac caagtgatta taaagtctta attgtagatg
     5341 attctaaaat ggatagaact ttaatgcaaa aagctttaga accgctagga gttagtttaa
     5401 tcgaagcaac aaatggtgtt gaagcattga atattataaa atctggcgaa catgatattg
     5461 atgcaatgct tatagatatc gaaatgccaa gaatggatgg atacacctta gctggtgaaa
     5521 ttagaaagta ttctaaatat cgcaacttac cattgatagc agttacttca agaacaagta
     5581 aaactgaccg tttaagaggt gttgaagtgg gtatgactga atatatcact aaaccttatt
     5641 ctccagaata cttggaaaat gtggttagaa aaaatttgaa actaggataa gaatatgagt
     5701 aatgaaaaat tagagcaaat tttgcaaaaa cagcaaactc agatggctgg tcctgatgtc
     5761 gatcaaagag aagatgatat catccaactt gttggctttg tagttggaga tgaggaatat
     5821 gcgattccaa ttcttaatat acaagaaatc atcaaaccta tagaatatac tagagttcct
     5881 agtgtacctg attatgttct aggggttttt aatatgcgtg gtaatgttat gccgctcatt
     5941 gatctagctc aacgctttca tttaggaagt tctaaaatga cacctcaaac aagatatatt
     6001 gttttaagag gtgagacaaa tggaactgga gttggaggaa atgctggttt tgttatagat
     6061 agattaactg aagcaattaa aattcacaga aacagaatcg atccaccacc tgaaacttta
     6121 gttaaagaca aaggtatgat ttatggtata ggaaaaagag atgaaaatat cttaactata
     6181 ctcaaagtag aagctttgct taagcgcgaa ttttaatgat taaactttgt gtttttgact
     6241 ttgatgctac tttaatggat ggtgaaacca ttgatatttt agctacagcg catggcaagg
     6301 gtaatcaaac aagcgaaatt acccgccatg ctatgactgg agaacttgat tttttcgaaa
     6361 gtcttcaaaa acgagtaagc tttttaaaag gtatgtctta taaaaaagtt ttagaattaa
     6421 gtagcacact tccactaatg cgtggagcac atgaacttat ccaatattta aaatctaaaa
     6481 atatacaaat tgttattttt agcggtggtt ttcatgaagg cataaatcct gctatgcaaa
     6541 aacttggaat taacctcggt tttgcaaatt atctgcatca taaaaatgac attttaacag
     6601 ggctagttgg tggggaaatg atgttttcaa attcaaaagg cttaatgcta caacgattaa
     6661 aaagcttttt aaatttgaaa acagatgaag tgatgtgtgt tggcgatggg gcaaatgatt
     6721 tggcaatgtt taacgaaagt ggattaaaga ttgcattttg tgctaaagaa attttacgtt
     6781 ctcaagctga tatttgcata gatataaaag acttaaaaga aataataaag gtaatataat
     6841 gaaaaatttt tctctttggt gtgattttat agaaaatagt tttttagata atgaattttt
     6901 aaatttatta tcacatggaa ttaatggcgc tacttcaaat cctgctattt ttaaaaatgc
     6961 tattttaaat tctccaattt ataaagataa aattcttaaa ttaaaagaaa aaaaaacaaa
     7021 agatatttat gaagaattag caatttctga tattcaaaaa gcagctgata aattagctcc
     7081 tcttttttat caaaaaaatg atggatttat aagtattgaa atagatccaa gacttcatga
     7141 taacacaact cttagtttag gtgaagctaa aagactttat agtgctatta gcaaagaaaa
     7201 tgtaatgatt aaaataccag ctacaaaagc ttcttatgaa gtaatgtatg aacttatgaa
     7261 aaatggtatt agcgtcaatg ctaccttaat tttttctctt gaacaaagtc aaaaatgttt
     7321 tgaagcttta aatgcaggtt tagtcgaatt tagaaaaaac aatatagcct taaaagaaca
     7381 aaatactaga acaccacaag ctgttataag tatttttgta agtcgttttg atagactttt
     7441 aaatcctaag gctaaggagc aaaatcgtat tggaatttta aatgcaaatt tagcttataa
     7501 caatatctac tcaaaaaatg aacctaatat tcgcgccttg tttgcaagca ccggagttaa
     7561 aggagatgat ctgccaaaag actattatat caaagaactt ctttttgaga attctgttaa
     7621 tactgctcct cttgatgcaa tagaggcatt taaaggaaaa atgcatttta aaaaaccttt
     7681 aatgaatttt gaaatttata cagaacttaa tcaaatcatt tctcaaaatg aacgagaaaa
     7741 agcttgcaat gacttattaa gtgatggcct agagcaattt tgtattgctt ttgaagatat
     7801 tttaaaagct ctttaattaa cgtattttta tcattttatt ctttgaaagt tttaatattt
     7861 ttgatgggat attttcgaaa aatttctcat caagtattat atcggcaaca cttctagccc
     7921 attcttcatc aaattctttt ccatgcttgt ttgccgaaga tgaataaaaa tagccatttt
     7981 tacttaaaaa attcgcatgt ttacactctt tcacaatacg aatggcctga ttattgggat
     8041 aaataaaagt tgttttttta gaacgacgta ctaaattttt aaaagatttt ggaattcttg
     8101 ctaaactttt taactcgtaa aatttcgcag aagtgattaa gcaaggctga tttttatctc
     8161 taccttttaa agcattaatc tcttctaaat ttttacttaa aaatcctacc gtagtatctg
     8221 tttgagctaa ataaatcaag atttaagcca ctcttgcaaa ctctttacat ctaggcaaga
     8281 tttactctgt atagctttaa tcgattttgc acctgctaaa gctgatcgta aatttgtaaa
     8341 ataaggtatt ttaaaacgaa taatattttc acgaattttt ttcgtatcgc ctttaaaact
     8401 gtgactatcg cttgtattga taactaagtg aatttcccca tttttcaatt tatcttcaac
     8461 attggggcgt ccttctgaaa ttttatgtac aagttcgcac tcaaaaccac tttctaaaat
     8521 ttccttgcaa gttccccctg ttgccataag cttaaagcca agctttacat attctgcagc
     8581 gatttttttg gtatattttt tatccttatc ttttaaggag ataaatacca cgccttgctc
     8641 tggaagatga ttaaacgatg caatttgact ttttgcataa gaatttgcaa aatccttgct
     8701 tatacccata acttcacccg ttgaacgcat ttcaggacct aattctaaat cacttccact
     8761 aagttttgca aatggaaata ctgcttcttt cacgctcata tattttggag ttttagggcg
     8821 taaaatttta gtatcaaaat taaccacttt aaaagtatca taaaatttta aagcttcttt
     8881 taaatttcct tgccacatca cacgcgttgc cacttttgct aaaggaatac ccgtagcttt
     8941 actaacaaaa ggtacggtac gactagctct aggatttacc tctatcatat aaagctcatt
     9001 attatgtaaa gcaaattgta tatttaaaag tcctacaact cccaaattta aagcaatatc
     9061 tgcggttttt tgtgcaataa attcttgcat tttttcatcg atattacaag gcggcaaaga
     9121 acaagcactg tcacctgaat gaattcctgc ttcttctatg tgctccataa ttcctgcaac
     9181 ataaacatct ttaccatcac aaatcgcatc aacatcaatt tctgtagcat tgtctaaaaa
     9241 ctgatcgatc aaaacagggc ttttatcgct tacatccaca gcttcttgca tatagagtct
     9301 aagttcagcc tcatcattta ccacgcgcat cgcacgccca cctaaaacat aacttggtct
     9361 tacaagcaca ggatacccta tatcactagc cttaagaacc gcttcttcta cgcttgttgc
     9421 agtagaattt tttggctgat tgatacctag ctttgtaata aattcggcaa atttctttct
     9481 atcttctgcc acatcaatta ctcttgcgct agtacctata atcttagctc caaaagcact
     9541 taaacgctta gcaaatttca aaggagtttg tccaccaaaa tgcacaatca ctccatcagg
     9601 tttttcacgc tcaatcaccg ctcttaaatg ttcgaaatca ataggctcga aatacaaaat
     9661 atcacttgta tcatagtcag tcgaaacggt ttcaggatta caattataca taatagtttt
     9721 aatacccata tctttaagcg caaaagaagc atgtacgcaa gcatagtcaa attctatacc
     9781 ttgtcctata cggtttggcc ccccacctat aatcatcact tttttttctt ttttatcctt
     9841 agcatcgttt ttactttgag tgagttcgct tacattgata cttgaataaa gataaggagt
     9901 taaggcttca aattcacccg cacaagtatc cacttcacta aattctgcga tgattttttg
     9961 cttcattctt gcataataaa tatcattttg gcttaattct aaattatctt tcaaatttac
    10021 aagcaaggct atcattttat ctgaaaagcc catagttttt gcttttctca aaagagcctt
    10081 attgtttaaa atatccatat caatttgttc ttcaaaatct acaatttctt taatctgtgt
    10141 taaaaaccaa ggatctattt tacaaagctc ataaagttct tctacgctaa aaccttccct
    10201 aaaagcttga gcaacataaa gtaaacgctt ttcattggca ttacgaattt taaaaacaag
    10261 atcatttcta tcttcaaatt ttaccctatc aaaaccactt aaagaacgct caagcgaaca
    10321 aagtgctttt tgtatacttt ctttaaaagt gcgtcctata gccattacct cacccacact
    10381 tttcatagct gtacctaaag ttgtatttgc tcctggaaat ttttcaaagg taaagcgagg
    10441 aatttttgtt acaatataat caatcacagg ctcgaaagat gcaggagttc ctgtaatatc
    10501 atttttaatc tcatctaagc taaaacctac tgccaaaagt gtcgcaacct ttgctatagg
    10561 ataacccgtt gccttagaag ctaaagcact tgatcttgaa actcttggat tcatttctat
    10621 aactatcatt cttccatttt ttgagttgat agcaaattgc acattacttc cgcctgtatc
    10681 tacaccaatt tcacgcaaaa tagcaaaaga agcattacgc ataacttgat attctttatc
    10741 cgtcaaagtt aatgctggag ctattgtaat actatctcct gtatgaactc ccataggatc
    10801 gatattttct atgctacaaa ctatgataca attatccgct ctatcgcgta taacttccat
    10861 ttcatattct ttccaaccta acaaactttc ttcaatcaaa atttcatgga taggtgataa
    10921 agctaaagca gtattggcaa gttctttaaa ttcgtccata ttgtaaacca cgccacttcc
    10981 agcaccccct aaagtataag aagcacggat catcaaagga aagccgattt catctacggc
    11041 ttttaaagct tcgtcataat tatacgcata catcgatttt ggcaaatcca tgccaatttt
    11101 tttcatacat tctttaaaaa cctgacgatc ttcgcctttt ttaatcgcct caggatttgc
    11161 gcctaaaaat ttcacatctc ctaaaagtcc gctttcataa acttccatag caacatttaa
    11221 cgctacttgt ccacccatag ttggcaaaat tgcatcaatt ttttcttttt taataatact
    11281 taaaatactt tcttttgtta tgggttctat ataagtcgca tctgcaaatt cgggatctgt
    11341 catgatggtt gcaggatttg agttgattaa tactacacga tatcctaatt cttttaaagt
    11401 ctttgcggct tgagttccag aataatcaaa ttcacaagct tgtcctatca caataggacc
    11461 acttcctata agtaaaatgc ttttaatatc tgttcgtttt ggcataaatt ttcctaagag
    11521 cataaatttg ggctgattat aacaaaaatt agttttataa actttgaaat tatcgatata
    11581 attttaaaaa ataaacactc tgcttttaat ctaggaaata atacataaag aaatttaaga
    11641 ttttttataa aattctcatt caattataaa catttatttg ataatttaat aaaattttgg
    11701 ctatgttttt attaagtatt gaaatttaag ctttattttg ctaaaatatc tacattaaaa
    11761 atagcacaat aaaggcggta aaatggcaac ttctaacgca gaacttgaaa tcgtaaaaca
    11821 gctttttagc actctaagcg atgatgataa aaaatcattt ctaaaatcta tcaaaaacaa
    11881 agaaaaatca gagcaaaatt taatactctc aaaagagata aaagcgtgtc cgcattgcaa
    11941 atctactaat tttgtgaaaa atggaaaaaa agatggcaaa caaagattta tgtgtatgga
    12001 ttgtcataag acatttactg ttacaaataa ctcaatcttt tttaaaaccc aaaaagacct
    12061 tgaaatttgg caaaaatata tccattgtat gattgaaaaa tactcactta gaaaaaccgc
    12121 tgaaatttgt ggcattgcac tatctactgc gtttttttgg cgacataaaa tcttagacac
    12181 attgcaaaaa atgcaagatg aagtaaaact taatggcata gtagaagcag atgaaacatt
    12241 tatgcctatc tcatataaag gtcatcacaa ggattttaac tttccacgct tagcaaagaa
    12301 aagaggaact gcaaacacta agcgtggctt atcaaaagaa cttgtttgca taccttgcgt
    12361 agtaaattta aatggcaaat caatagcaaa aatatctaat ctgggtaagc caaatattgc
    12421 tagtttatcc aaagtaatac aaggcaaagt tgagaaagaa agcgtatttg taactgatag
    12481 cctacgctca tatttaaaac tatcaaatga aatgagccta aaccatatcc gcataccacg
    12541 aaacaaacat agtaacggct cgtttaatat tcaagtcgta aataactacc atagcagact
    12601 taaatcaatg cttgtgtata attttaaagg cgtggctact aagtatctaa ataattatct
    12661 tgtctatcac aactttgtaa attttgcaaa agagagtaga aaagataaag aacaaatttt
    12721 gctaaaccat atactaaaca caaattgcat aagccaaagt ataagcgtag caaatagacc
    12781 tgccgtgccg ttattggtag cgtaagctgt aaaaaattta aaaaaggaat aaaattgtca
    12841 tataaaaaat atttaaacaa tgttacattg ggtgattgct gtgagctaat gaaaaatatt
    12901 cctaataatt atatttcagg ctgcataact gacccaccat ataattatga attttttggt
    12961 agaaattggg ataatgtaga aataaaacgc agaaaaaata aagcaaataa caataaaaat
    13021 atattggtaa aaaatatacc ttatggcagt gggttagcag gaggagttaa aaatgaaaga
    13081 tggtataaaa aaaataggga taatatttta gaatatcaat cttgggtgga gcattggggg
    13141 aaagagttat atagaatttt aaagcctggt gcgtttataa tggtatttaa tagcaatagg
    13201 agtgtggcac atattcaaat agcacttgaa aacgtgggtt tttataccaa agatatgttt
    13261 atatggataa gaaatagtgg tattccaaaa ggcttaaatg cttatgaaaa aatgaaaaaa
    13321 gatggatatg aattggcaga aaattggaaa ggctggcaca gtgcaacaag aaacaattac
    13381 gaggcagtat ctgtcttgca aaaaccaata gaaaacaatt atgtaaacaa tgtaaagaaa
    13441 tacggagtag gacttttaaa aacagaaggc tatataaatc ataatggctt tctatcaaat
    13501 atatttgaag gctatcaaag agataaaaaa gatgatttca ataagcatat aacggttaaa
    13561 ccaataaaac ttatagaaaa attagcagag atgattgttc caaaacaaac aaataatatt
    13621 ataattgacc cttttatggg aagtgggaca acagcattag cttgtaaaaa tttaggtatt
    13681 ccatatattg gttttgaatt aaatgaagag tatattaaaa tagcaaatat gcgattatct
    13741 taaaaatcat atttggcttt taaacaagcc aaatattgaa ctatatctat tccaccatag
    13801 tttatgataa aatcaaaagc atctttgtca gagataattt cccaaccgcc gtttatagca
    13861 gcagtaatag ccgctggtag gttatcgttt cttaaaatca ggaaaactgg attatatccc
    13921 atttctttta acatttttcc atataattta aattttttca gcgttccact atcgcctgaa
    13981 ccaattcgat atttagcatc aattgccaaa ttacctatga aataatctac agggtggtct
    14041 gttccaaaat caacactttc tggtggctta aatagattat tggaagtaaa aagctctttg
    14101 gttattaatt cccaaactct tccaagctct ctattccaat attgcatatt ttgcattttt
    14161 gtttcataag ttatattaaa aaaatccatt aaaatatctg agtcagaaac aattgtgtca
    14221 aatttctttg atttaaaatt acttttatat tgcgacaaaa tatcaataac attacgttct
    14281 atttgctcta taactatatt catcatttta gtaactccga caaatcagct cctagagctt
    14341 ttgcaatttt ataagcattt attagggtaa tatttttctc acatctttct atactgccaa
    14401 tataagttct atgcagacta gataattctg ctaacttttc ctgagtaata tttagtgctt
    14461 gtcgtctttt gcgaacattt tttacaaata tgtttaaaat ggaaatcata atttatattt
    14521 tataaataag taacaaaata aatcaacact ctattgatag cattttttag aaatcaatac
    14581 actataaaaa cagagccttt taatttaatg aaatttgaaa agctttaaac tttttaatct
    14641 agtgcgtttc aatcaagtcg ccaaacaaag aattaaaacg cacaatttca ttataagagc
    14701 catagtttaa gcccttaaaa gaaattgtaa taaatttaaa cttactaatt cctttttaat
    14761 ggctttatta attgcattaa taaaatttag aaaggacaca aaatgcaaga tacaaacaaa
    14821 gactttttaa ctatacaaga agtaattaca ctttacagct taagcaaaga tactcaaaat
    14881 aaatacagaa tgcaaaagaa aataccttat attaaaatag gtaaaaaaat cttttatgaa
    14941 aaagttaagc ttgatgagtg gtttaaaaac catactatca attaaggcgg tagttatgaa
    15001 taataaacaa gccttagaat atttaaaaag cgaattatgt tttatattta atactagatt
    15061 tagatacttt gactttgaaa tttttaattt acttgagaaa aaaatacaaa ttttgcaaaa
    15121 attaccagac tttgaaagag aaataaaaga gcttttagca attttagaaa gtaataaaaa
    15181 actttttctt aaaaagaata cttttattaa aaaagaacaa aaaaggcaaa ttcttttata
    15241 aatgcttgta aggcaactta tgaagcttta aaacacaaat taaaggctta aaatgagcat
    15301 aagccttttt aatgatgaaa taaaggcgta tataaaaaat tattattcta tagttgattt
    15361 tttatattta cgctatggtt tggagtttga caaagcagga aatgaaagac acaataaaag
    15421 ccttaaaata aaaactaaca cttgcttgat tactgatttt aatggaagtt ttagtgggga
    15481 tataatcgat tttatagcct ttaaagaaaa tgtagagtta aaagaagctt tgattatatt
    15541 tagtgatttt aacaggttac ccacgcaaaa ggtgggtagc tttaaaccac aaaaagagcc
    15601 tttaaaagat aatagctatt taaaaaatat agcttattct ttacaggcta attttaattt
    15661 agctaatagc gattttatag aatgtaaggc tttagaaaaa gcttttttta atgattttag
    15721 actttttatg cacttatgta aattaaattt tttaaaagat gatgagtttg aaagtatttt
    15781 aaaagactat tttgcttttt caaaagatga taaaagtttg gcttttatct tgaaagataa
    15841 aaacgaaatt aaaagcgtgg ctattagaga aaagcttttt aaaaatgaat tagtcaaatg
    15901 gtttaaagtt aaaggtagta gcaataaatt tataaaactt ataaaagcca aagaaaaagg
    15961 cttattaaaa gattattgtt ttatctttag tggcataaaa gaaattatag taagtgaatt
    16021 gctaggatta aacgctgttt gttttcaaag tgatagcatg atgaaaaata tacactcaca
    16081 cgagcaaata aatgagcttt taaacctcat cgataataaa agaatagttt ttatagttga
    16141 aaacgatgag agcagtttta aagctaattt agagctttta aaagaattaa tacaaataaa
    16201 tcctttggaa aaaggctatt gtgtttttaa ttatgatgag gtaaaaaacg ctgattttat
    16261 agatttttta gcttatttaa tgaaagagtt aagacaagac taccaaagag ataaaaaagg
    16321 ctt
//
LOCUS       DBBXPZ010000038        15872 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.040, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000038 DBBXPZ010000000
VERSION     DBBXPZ010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15872)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15872)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15872
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.040"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(42..2408)
                     /gene="pflA"
                     /locus_tag="ACJFD7_000978"
     CDS             complement(42..2408)
                     /gene="pflA"
                     /locus_tag="ACJFD7_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HGG0859798.1"
                     /translation="MRILFLILLSFLNAFAFELVLNTGRENNQAFAVLHASNDLEFTC
                     QKFITEAKVHFECDIAGMVDNKLKDQSFSAFDLKFIQEAQKIKMIILPKIQARMFDTS
                     QNIYIDKELSSSSSHKSKAFTFIFTPELAPIKDYDGLDFNINFPHESLPYVGALDLNS
                     DPVVIPQSADINTYLRIKKEYDKANYNQVVIDAQNAINRYRGSIFTSEFILYKLRAQN
                     KLYTQDPSMRDQQILEKMIDDAKNWTRTFTSDKNFSEVLHIMLRTYIALAQRADVEYT
                     MSILDNEQPNNYFTQLSKLDYADYIYNLNEKEKAVNIYENTYFNTKNLDLAARAAMSL
                     AKNLLSNEQVNKAIEYINTILKANPEYFGKDIPRSLELAKLFNQKGQFDISASIYEDA
                     FAKMSKLDPSYEETLKDLALVLSHANRSSDAKKYLDLYMDDYLDGKYLDEIKKASDEV
                     FFALGDNNASFLHQRYTDLMKQYANKDENIANKALDEDVALYYKEGNFSAILAYKDLI
                     ESKKIPNATQFLEKAAINDLKNAIKADNCINAANIFMRFSAYDIGQKIENKKQMLACL
                     IRTSNVEQALDYIDKNYNEDSIFYGLQKASILFDNKQYPQVIKISKDIANSRILKSDD
                     ENFKAYYLQFLSLLRLNDYNQAIKILQILESFPMNFSMVEAYDALLSYANDHNMQTTI
                     LTYAPKAIDYQNFKGINLFSPNLEFIYLDALTKINKNEESLAVLTDLLKLKLSDEDRA
                     RALYIQALTYERMQNIQAEKESLKQCLEIKSASNWQNLCKSKNQILNQ"
     gene            complement(2430..3818)
                     /gene="nuoN"
                     /locus_tag="ACJFD7_000979"
     CDS             complement(2430..3818)
                     /gene="nuoN"
                     /locus_tag="ACJFD7_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HGG0859799.1"
                     /translation="MLNNFLNLELLNISLSYPFLFLITTAIVLLLCSGFWKFHRSFYI
                     GISSLSLIVSAFLILNNANAQGLDAKAFLATLNNDIVSFYASLVILCFSFLYLLMQKE
                     ENQGEFYALFLFMIASLLLMVSSSNLVLIFIGLESSSLALYTLIAMRGSDNAISSAIK
                     YFSIAAVGAGFFVMAVAFIYLKTGTLDLSANLALKNEFQKDPMLLGAGVMIFVLCAIK
                     LSLAPFHFWLKDVYYAAHTNLVAFISVVPKVAMLVVVIRLFDFLNNTGFEYIIIVLAI
                     FSMLIGAFAALSQNNIKKMFAYSSVVHSSLVLIACIPLLKEQNFDGILLAIFGYWTLF
                     AFANYAVFMILSNYENNSYESLNGLLVKKPLIAFCLSISVLSLAGIPPFGVFWGKFMI
                     LNTVILNGYWYLALFVALSSVIMLYAYLKILIHVLFMKNDRVYNIKFSFIQNFILAFC
                     VCVSIFAILLML"
     gene            complement(3808..5295)
                     /gene="nuoM"
                     /locus_tag="ACJFD7_000980"
     CDS             complement(3808..5295)
                     /gene="nuoM"
                     /locus_tag="ACJFD7_000980"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HGG0859800.1"
                     /translation="MLNYLIFFPLIAAFVVLLLNRGGVKVFSVVVSFMILALNLDIFA
                     DFLQGVSFDYNLSFKILKFFSFHVGVDSIALVLMLLSSLMIFLSFLFLKLEQKALISC
                     IFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSIL
                     MLVALIYQAYLNYQLLNIFTFDLEIWKNNASAVNFTEQLLLFGAFFIAFAIKAPLFPL
                     HTWAPKVYANSPILVSVMLVVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVY
                     NALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGALFLM
                     VELLYQRYHTYDISFYHSLAKKVPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAK
                     INLFYALLAGLVIILGAIYMFAVFRKIFFMQKQSFIEGFSLRFREIVALVCIVVMIFG
                     LGLMPNILLKPIQKDVDNLIKTMNIRAVEQNTLDFLSKIGEANVK"
     gene            complement(5297..7087)
                     /gene="nuoL"
                     /locus_tag="ACJFD7_000981"
     CDS             complement(5297..7087)
                     /gene="nuoL"
                     /locus_tag="ACJFD7_000981"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HGG0859801.1"
                     /translation="MQNLALISLFSPFVAFLFASCFALSEKKQFVGIFCSLLVALSTF
                     CSLYLLFCNEAFNVSLFEWFAGVNFGFDIDAISLTMMSIVGIVATCVHFYSIFYMAHD
                     EGFNKFFAYLGLFVFSMLFLVMSDNFLGLFVGWEGVGLCSWLLIGFWYKNDTYSFAAN
                     EAFIMNRIADLGMLLGIFWLYLQAGTLKYDEVFSMAQSLDHNALILIATCLFIGAMGK
                     SAQFPFHTWLADAMAGPTPVSALIHAATMVTAGVYLVIRASTLYDLVPEVSYIIALLG
                     AFVAIFAASMALVVRDLKRIIAYSTLSQLGYMFVAAGLGAYGIALFHLATHAFFKSLL
                     FLGAGNVMHAMNDKLDIKKMGGLFKPLKITAILMCIGSLALAGIYPFAGFFSKDLILG
                     YSFISFHHGIFLVLLIAAFLTAFYSFRLLMLVFFTPARHDEHPHEASKIALLAMSPLM
                     VLAIIAGFFEHSFFEYLSTKLVFIDAQNQIVMICASVAAILGVILAIFAYKNSWFKES
                     IEENKIHKLLSNDYFIPRFYHQFIVSKYESLCAILKHCDLYIFDRIVEKIALYSQIIS
                     QKMIMPNSLNLMLRFLVATFVILLILVWMV"
     gene            complement(7089..7385)
                     /gene="nuoK"
                     /locus_tag="ACJFD7_000982"
     CDS             complement(7089..7385)
                     /gene="nuoK"
                     /locus_tag="ACJFD7_000982"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HGG0859802.1"
                     /translation="MIEKYFFVAILMFVIGLVGILKRQNLIMLFISSEILLNSANLAL
                     VAASKMHNDLNGQVFALFIMGVAACEVAVGIALCVLWYRSKGTLELKSLKEVEA"
     gene            complement(7382..7900)
                     /gene="nuoJ"
                     /locus_tag="ACJFD7_000983"
     CDS             complement(7382..7900)
                     /gene="nuoJ"
                     /locus_tag="ACJFD7_000983"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HGG0859803.1"
                     /translation="MIENLAFLFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGF
                     YFLLDAQFLGVIQIIVYSGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAIL
                     LLTMLIGFKYQNISTDLPLNDPALFDFNKQLALAIFSKYLLAFEFIAILLLIALVCAI
                     TLTHKELTKEKQ"
     gene            complement(7897..8538)
                     /gene="nuoI"
                     /locus_tag="ACJFD7_000984"
     CDS             complement(7897..8538)
                     /gene="nuoI"
                     /locus_tag="ACJFD7_000984"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HGG0859804.1"
                     /translation="MKNYYLVDEKRKTPVSTWEKISQALRRSVKLELFVGLFVMMREL
                     LKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEKICISNCIRMET
                     SLDENGRKKVGNYSINLGRCIYCGFCAEVCPELAIVHGIEYENAAEQRSYFGYKQDFL
                     TPIDKLKNQVEFEGAGSLRKDANLWVKKTPNYYDAMLESALENQNTQEQGENK"
     gene            complement(8548..9546)
                     /gene="nuoH"
                     /locus_tag="ACJFD7_000985"
     CDS             complement(8548..9546)
                     /gene="nuoH"
                     /locus_tag="ACJFD7_000985"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HGG0859805.1"
                     /translation="MSDFAFFALETLIKCIIIIAIFASLAGLATYAERKVLAYFQRRI
                     GPDMVGPFGLIQLVADMIKLFTKEDIIPSNSQKFIFAIAPLISAICAFISLAAIPMLP
                     EFTLFGRVIQPIVADINVALLFVIGTSGLCFYAVFLGGLASNNKWSILGAARGLVAII
                     SYESVGALALIAIIMLVGSFSLVDINNYQSDGFFSWLIFKQPLAFVLFIIALFIETNR
                     TPLCLTENDAEIVAGYGTEYSGLRWGMFFIGEYTSMIAGAILVALLFLGGFNSFWIIP
                     GWIMMIVKSSFIFFWYFWARAAFPQLRPDQVMKMCYLILIPLAVLNLLITALTVLL"
     gene            complement(9539..12001)
                     /gene="nuoG"
                     /locus_tag="ACJFD7_000986"
     CDS             complement(9539..12001)
                     /gene="nuoG"
                     /locus_tag="ACJFD7_000986"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HGG0859806.1"
                     /translation="MTVKINGIDCAFEEGEYILNIARRNDIFIPAICYLSGCSPTLAC
                     RMCMVEADGKKVYSCNTKAKEGMVVESDLQNLWDERNEIMQAYCINHPLECGVCDKSG
                     ECELQNFTHKSRVNVQKYWIKDTHKPHKHWGMINYDPALCIVCERCITVCKDKIGESA
                     LKTVPRGGDSVDNSFKESMGKDAYAIWTKFQKSLIGPTNGDTLDCSFCGECTSVCPTG
                     ALIGSKFQYTSNIWELKRIPASNPHSSDCELMYYDIKQSGISNQKEKIYRVSNDFAFA
                     SLNKAARFAFDTQNEADKDEKAFKELVELFEKNEIKNIKFNSFITNEEALILQNLKKK
                     FNLSLINEEALKFKEFLQEFIANSGEFYSANTQDITKSDFLVVAGMLLRYDAPTLSYK
                     INNALVINKGSGLYFHPMEDMGIAKYSKNFISHIHKSGDEEQILYFLLQKFSQDEGIK
                     THLAEFFVSENKEIEESINEEVVEQVIEKDEEGNEIQKEVKKVVPKKVKNNIEVQRSV
                     FAKNLGIDEDKLEDLLLKKANFTLVIGSDFYFHKNAKKLAKLLALIQNTTPFKVFLNP
                     THTNTLGVAMICDLDNNTQEGKTLGYNEKGDFSFSYEEHANLASASLNQQEGTFLNYD
                     KRVVPTNAALEFKGYFLNDLANALGFDEEYTINYTKRLPINKGFSPIDFDHLDNFYTN
                     AGDCKRGYELNLECFKQVAKKEFISPNFENLNLKEDEILLYSANPSYQFGRFSNRASA
                     INEVIFLGVSENLAKEKNLKDKDLVKLKIKDKELSLSVRVDKDIKNGAFLPYFDEKLD
                     TLSFFDERFVVANLEKLGANHE"
     gene            complement(11998..12690)
                     /locus_tag="ACJFD7_000987"
     CDS             complement(11998..12690)
                     /locus_tag="ACJFD7_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859807.1"
                     /translation="MIYDNALCFLDMPSLKNKNLCEKIGVNSINISCLEDKNLKAKFY
                     KCEIASLSFVLALLCKLSDEGQFCDLDEGYLSAESCFGEEEAGEVLAFLKETKYLIID
                     KNIHSYKDSENIKYFLNFLSVKYGLKILDSDEEECDFKKAKLNTLKELDNYDGLVLFR
                     ANLQDKNLHCSKQFLQIAKCKDQSEVEILAKDFSLKTKLCLDENLQGTIAFLNYENNG
                     FDFTPIRIKEAK"
     gene            complement(12687..12914)
                     /locus_tag="ACJFD7_000988"
     CDS             complement(12687..12914)
                     /locus_tag="ACJFD7_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase subunit E family
                     protein"
                     /protein_id="HGG0859808.1"
                     /translation="MRRVDLRKSKELFEDLAQIIKEAKQGEVLVVLFEIGDFSPVEKS
                     FSFVKEQGCELLNSLKFNQVDWTIVIKKERV"
     gene            complement(12911..14137)
                     /gene="nuoD"
                     /locus_tag="ACJFD7_000989"
     CDS             complement(12911..14137)
                     /gene="nuoD"
                     /locus_tag="ACJFD7_000989"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HGG0859809.1"
                     /translation="MQIPSKLKPYYENIAFEQEDSKMIINLGPQHPSAHGNLRLILEL
                     DGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLC
                     GLEIPRRAAVIRMILLELNRITSHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKY
                     CGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPNDLKDYEDLLDDNRIWRLRTENV
                     GVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNEVEFGVPYAMQGDSYARYKVY
                     MQEFRESLKILRQCATLYKDTPPEILATHPEYVSASKEQILTQNYSLMQHFVLITQGL
                     KPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWHCAFFEEMLVGTYLADV
                     VAIMGNVNIVLGEIDR"
     gene            complement(14139..14933)
                     /gene="nuoC"
                     /locus_tag="ACJFD7_000990"
     CDS             complement(14139..14933)
                     /gene="nuoC"
                     /locus_tag="ACJFD7_000990"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HGG0859810.1"
                     /translation="MMRKYSDKKNAQTQNYYKDRFYHAPHTVKSDVNESVFKEDFEVL
                     KTQVEILNSFVELDFWVIEIKKEDNVKTLQMLKTLGYLSFTEASAIDFIASKNGFEVF
                     YQLLNLEKKLRVRIKTFVGVKERLQSVAHVFKGANWSEREIYDMFGIFIINHPNLKRI
                     LMPDDWFGHPLLKTYPLKGDEFARWYEIDKIFGKEYREVVGEEQRDSGFADDKDTLNF
                     ARLYHEVPKGGQKKEISFKQEYQEDEGVAFVKKVKRDEAKILEKRR"
     gene            complement(14930..15433)
                     /gene="nuoB"
                     /locus_tag="ACJFD7_000991"
     CDS             complement(14930..15433)
                     /gene="nuoB"
                     /locus_tag="ACJFD7_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045271 - respiratory chain complex I
                     [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
                     /protein_id="HGG0859811.1"
                     /translation="MAEHQINYASGLPVVLTSVDKLVQWGRSNSLWALSYGLACCAIE
                     MMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHAEFTRRLYDQMPDPKWVISM
                     GSCANTGGMFNTYSTVQGVDRIIPVDIYVPGCAPRPESFQFALMILQKKIRKEKASRK
                     IAPKRLV"
     gene            complement(15415..15804)
                     /gene="nuoA"
                     /locus_tag="ACJFD7_000992"
     CDS             complement(15415..15804)
                     /gene="nuoA"
                     /locus_tag="ACJFD7_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 3"
                     /protein_id="HGG0859812.1"
                     /translation="MSHIDASHPYFGIFLMLVLASVIFFGLVFLASKIGNNFAAKNRK
                     KLGLGIYECGPIPVKQANKINSQFFIIALIFILLDIEVVFLFPWALIFKDLGWFGLLE
                     VFVFIVLLGVGFLYAYKKGAFAWQSIK"
BASE COUNT         5945 a         2998 c         1894 g         5035 t
ORIGIN      
        1 cttagataac tagccaaaaa gctagttatc tctaaattta cttattgatt taaaatttga
       61 tttttactct tacataaatt ctgccaattt gaagcacttt tgatttcaag acattgtttt
      121 aaactttctt tttcagcttg tatattttgc attctttcat aagttaaggc ttggatatat
      181 aaagctcttg ctctatcttc atctgaaagt tttaatttaa gtaaatctgt taaaacagct
      241 aaactttctt catttttatt gattttagtc aaagcatcaa gatatataaa ttctaaatta
      301 ggactaaaaa gatttatacc tttaaaattt tgatagtcaa tggccttagg tgcgtaagtt
      361 aaaatagttg tttgcatatt atgatcatta gcgtaagaaa gtaaagcatc ataagcttcc
      421 accatactaa aattcattgg aaaactttct aaaatttgca aaattttaat ggcttgatta
      481 tagtcattta aacgcaataa agataaaaat tgcaaataat aagccttaaa attctcatca
      541 tcacttttta aaattctaga attagctatg tctttagaaa ttttaatcac ctgaggatat
      601 tgtttattgt caaaaagaat agatgctttt tgaagaccat aaaatataga atcttcatta
      661 taatttttat ctatataatc aagtgcttgt tcaacattag aagttctgat aagacaagct
      721 aacatttgtt ttttattctc aattttctga cctatatcat aagcactaaa acgcataaaa
      781 atatttgcag cattgataca attatcagct tttatggcat tttttaaatc attaatggct
      841 gctttctcta aaaattgagt agcatttgga atttttttac tttctataag atctttataa
      901 gctaaaatag cactaaaatt tccctcttta taataaagtg caacatcttc atctaaagct
      961 ttatttgcaa tattctcatc tttatttgca tattgcttca ttaaatctgt ataacgctga
     1021 tgcaaaaagc ttgcattatt atcacctaaa gcaaagaata cctcatcact tgctttttta
     1081 atttcatcta aatacttacc atctaaataa tcatccatat acaaatcaag gtatttttta
     1141 gcatcactag atctgttagc atgtgataaa accaaggcta aatcttttaa agtttcttca
     1201 taacttggat caagtttgga cattttagca aaggcatctt cataaatact tgcacttata
     1261 tcaaattgtc ccttttgatt aaataattta gcaagttcta aagatcttgg aatatctttt
     1321 ccaaaatatt caggattggc ttttaaaatg gtattaatat attctatagc tttatttact
     1381 tgctcatttg aaagcaaatt ctttgccaaa ctcatagctg ctcttgcagc taaatctaaa
     1441 ttttttgtat taaaataagt attttcataa atatttacag ctttttcttt ttcatttaaa
     1501 ttataaatat agtctgcata atcaagtttt gataactgag taaaataatt attaggttgt
     1561 tcattatcca aaatcgacat tgtatactct acatcagcac gctgagctaa agcgatataa
     1621 gttcttaaca ttatatgtaa aacttctgaa aaatttttat cacttgtaaa agtacgcgtc
     1681 caatttttag catcatcaat catcttttct aaaatttgtt gatcacgcat gcttggatct
     1741 tgagtgtaaa gtttattttg agctcttaat ttataaagta taaattcact agtaaaaata
     1801 ctaccacgat atctattgat agcattttgt gcatcaatca ccacttgatt gtaattagcc
     1861 ttatcgtatt cttttttgat gcgtaaataa gtattgatat ctgcactttg aggaataaca
     1921 acaggatcag aatttaaatc caaagctcca acataaggca aactctcatg tggaaaattg
     1981 atattaaaat cgagtccatc atagtcttta ataggtgcta gttctggtgt aaaaataaaa
     2041 gtaaaagcct tacttttatg cgaacttgat gaactgagtt ctttatctat ataaatattt
     2101 tgagaagtgt caaacattct tgcttgtatt tttggcaaaa tgatcatttt aattttttga
     2161 gcttcttgta taaattttaa atcaaaagca gaaaaactct gatcttttaa tttattatca
     2221 accatacctg caatatcaca ttcaaaatga acttttgctt cggtaataaa tttttgacat
     2281 gtaaattcta aatcattact cgcatgtaaa actgcaaaag cttgattatt ttcgcgaccc
     2341 gtgtttaaaa caagctcaaa agcaaaagca tttaaaaaac ttaataaaat taaaaataat
     2401 attctcataa aataattata gcaaaactct tataacatta acaatatagc aaaaatgctt
     2461 acacaaacac aaaaagctaa aataaaattt tgtataaaac taaacttaat attataaacc
     2521 ctatcatttt tcataaataa aacatgaatt aaaatcttta aatacgcata aagcataata
     2581 acagaagata aagccacaaa aagcgccaaa taccaatatc catttaaaat tactgtattt
     2641 aaaatcataa atttacccca aaatactcca aaaggcggaa tacctgctaa agaaagcaca
     2701 ctaatgctta aacaaaaagc aattaaaggt tttttaacca aaagcccatt taaactctca
     2761 taagaattat tctcataatt acttaaaatc ataaatacag cataatttgc aaaagcaaat
     2821 aaagtccaat atccaaaaat agcaagcaaa attccatcaa aattttgttc ttttaataaa
     2881 ggaatgcaag ctatcaaaac caaagaagaa tgcactacag aactataagc aaacattttt
     2941 ttgatattgt tttgacttag agccgcaaaa gcgcctataa gcatagaaaa aatcgctaga
     3001 actattatga tatattcaaa acctgtatta tttaaaaaat caaacaaacg aataaccaca
     3061 accaacatgg caacttttgg cacaactgaa ataaaagcaa ccaaatttgt atgtgctgca
     3121 taatacacat ctttaagcca aaaatgaaaa ggtgccaaag aaagcttgat tgcacaaaga
     3181 acaaaaatca tcactccagc acccaaaagc atgggatctt tttgaaactc attttttaac
     3241 gctaaattag cagataaatc taaagttcct gtttttaaat aaataaaagc tacagccata
     3301 acaaaaaacc cagctcctac agccgctata ctaaagtatt ttatcgcact tgaaatagca
     3361 ttatcacttc cacgcattgc tattaaagta taaagcgcta aagaagaact ttcaagtcct
     3421 ataaaaataa gtactaaatt tgagcttgaa accatcaaaa gcaaagatgc aatcataaat
     3481 aaaaataaag cataaaattc accttgattt tcttcttttt gcattaaaag atataaaaat
     3541 gaaaaacaca aaatcaccaa agaagcataa aatgaaacaa tatcattatt taaagtagcc
     3601 aaaaaagctt ttgcatctaa accttgagca tttgcattat ttaaaatcaa aaaagcactt
     3661 acaatcaaag acaaagaact tatgccgata taaaacgatc gatgaaattt ccaaaaacca
     3721 gagcaaagca aaagaactat tgcagttgta attaaaaata aaaatggata agataagctt
     3781 atatttaaaa gttctaaatt taaaaaatta tttaacattt gcctctccta ttttagataa
     3841 aaaatctaaa gtattttgct caacagctct aatattcatt gtttttataa gattatccac
     3901 atctttttgt atcggcttta aaagtatatt tggcataagc cctagtccaa aaatcattac
     3961 tacaatgcac acaagcgcta ctatttctct aaaacgtaaa gaaaaaccct ctataaagct
     4021 ttgtttttgc atgaaaaata tttttctaaa tactgcgaac atataaatcg ctcctaaaat
     4081 aatcaccaaa cctgccaaca aagcgtaaaa taaattaatc tttgctatac ctaaaagaat
     4141 taaaaactct cccacaaaag aaacagttaa aggcaaagaa acactcgcaa gtaaaatgag
     4201 cataaagaaa attgaaaata aaggtacttt tttggctaaa gaatggtaaa aagaaatatc
     4261 ataagtatga tatctttggt ataaaagttc aaccattaaa aataaagctc ccgttacaat
     4321 accatgtgca aacatataaa aaaccgcacc actaataccc aaagcattta aagaaaaaat
     4381 tcccaaaatc atcacaccaa gatgtgaaat agaactataa gcaatcaatt ctttaatatt
     4441 ttctgctcta taagcaatta aagcattata aacgatactt actatacata aagctacaat
     4501 taaaggcata aaatacacac tcgcatctgg aaaaagtggt aaacaaaaaa gtaaaaatcc
     4561 aaaaggagcc attttaaaaa ctacaagcat tacagaaaca agtataggcg aatttgcata
     4621 aaccttaggt gcccaagtat gaagtggaaa taaaggagct ttgatagcaa aagcgataaa
     4681 aaatgctcca aaaagtaaaa gttgctctgt aaaatttact gctgaggcat tatttttcca
     4741 aatttccaag tcaaaagtga agatatttaa aagctgataa tttaaataag cttgataaat
     4801 caatgctaca agcattaaaa ttgaacccgc aaaagcatag ataaaaaatt tcacccctgc
     4861 tctaaaatct ttaccataaa ctcccataat ataaagcaaa ggcaaaagag aaaattccca
     4921 aaaaacataa aacaacaaac catcttttgc gctaaaaagt cccataatag caaattccaa
     4981 aaagaatata caagatataa gcgctttttg ttctagtttc aaaaataaaa agcttaaaaa
     5041 tatcatcaaa gaacttaaaa gcatcaatac aagtgcaata ctgtctactc ctacatgaaa
     5101 gctaaaaaat ttcaaaattt taaaagagag attataatca aagcttaccc cttgtaaaaa
     5161 atccgcaaaa atatccaaat ttaaagccaa aatcataaaa cttacaacaa cgctaaaaac
     5221 cttaacgcct ccacgattta aaagcaaaac cacaaaagca gcaatcaaag gaaaaaatat
     5281 caaataattt agcattttac accatccata ccaaaatcaa caaaatcaca aaagttgcca
     5341 ccaaaaatct aagcattaag tttaagctgt ttggcataat cattttttgt gaaataattt
     5401 gagaatacaa agcaattttt tcaactattc tatcaaaaat ataaagatca caatgtttta
     5461 aaatcgcaca taagctttca tattttgaaa cgataaattg atgataaaac ctaggaataa
     5521 aataatcatt acttaaaagt ttgtgaattt tattttcttc aatactttcc ttaaaccaag
     5581 aatttttata agcaaaaata gccaaaatta cacccaaaat agctgctaca ctcgcacaaa
     5641 tcattacaat ttgattttgc gcatcaataa aaactaattt tgtgcttaaa tattcaaaaa
     5701 aactatgttc gaaaaatcct gcaataatag ctaaaaccat caaaggactc atagccaaga
     5761 gtgctatttt acttgcttca tgtggatgtt catcatgtct tgcaggggta aaaaatacca
     5821 acattaaaag tctaaagcta taaaatgctg ttaaaaaagc tgcgattaag agcactaaaa
     5881 aaataccatg gtgaaaagaa atgaaagaat atcccaaaat caaatcttta gagaaaaatc
     5941 ctgcaaaagg ataaattcct gctaaagcta aagatcctat acacattaaa atagctgtaa
     6001 tttttaaagg tttaaaaagt ccacccattt ttttaatatc taatttatca ttcatagcat
     6061 gcattacatt tccagcgcct aagaaaagta aagatttaaa aaaagcatgc gtagctaagt
     6121 gaaataaagc tataccataa gccccaagtc ctgcagccac aaacatatat ccaagttgcg
     6181 ataaggtaga gtaagcaata atgcgtttta aatccctaac caccaaagcc atagaggctg
     6241 caaaaatcgc tacaaaagct ccgagtaagg caataatata agaaacttca ggaactaaat
     6301 cataaagcgt actcgcacga attaccaaat aaacccccgc tgttaccatg gttgctgcat
     6361 ggattaatgc agaaacagga gttggtcctg ccatagcatc agcaagccaa gtgtgaaaag
     6421 gaaattgtgc agattttccc atagccccta taaataaaca agttgcgatt aagatcaaag
     6481 cattgtgatc taggctttgt gccatggaaa aaacttcatc atattttaaa gttcctgctt
     6541 gcaaataaag ccaaaaaatt cctaaaagca tacccaaatc cgcaatacga ttcataataa
     6601 aagcttcatt agccgcaaaa gaataagtat catttttata ccaaaaacct atgagcaacc
     6661 aagagcaaag cccaacgcct tcccaaccta cgaaaagtcc taaaaaatta tcactcatga
     6721 ctaaaaaaag catagaaaag acaaaaagcc ccaaataagc aaaaaattta ttaaaacctt
     6781 catcatgagc catataaaaa atactataaa aatgcacaca agtggctaca atacctacaa
     6841 tactcatcat agtaagcgaa atagcatcta tatcaaaacc aaaatttact ccagcaaacc
     6901 attcaaacaa actcacatta aaagcttcat tgcaaaaaag caaatacaaa gaacaaaaag
     6961 tactcaaagc tactagaagt gaacaaaata tccctacgaa ttgttttttc tcactcaaag
     7021 caaaacaact tgcaaacaaa aaagctacaa agggactaaa aagagaaatc aaagccaaat
     7081 tttgcatact aagcctccac ttcttttaag ctttttaatt ctaaagtgcc tttgcttcta
     7141 taccaaagca cacacaaagc tataccaaca gctacttcac aagccgctac acccatgata
     7201 aaaagcgcaa aaacctgtcc atttaaatca ttgtgcattt tagaagctgc tactaaagct
     7261 aaattagcac tatttaataa aatttcactc gaaataaaaa gcataatgag attttgtctt
     7321 tttaaaatcc ctacaagccc tatgacaaac attaaaatag caacgaaaaa atacttttct
     7381 atcattgttt ttcctttgta agctctttat gagtaagagt gatagcacaa actaaagcga
     7441 tcaaaagcaa aatagctata aactcaaaag ctaaaagata ttttgaaaaa atcgctaaag
     7501 ccagttgttt attaaaatca aacaaagcag gatcatttaa aggcaaatcc gtgctgatat
     7561 tttggtattt aaaacctata agcatagtta aaagtaaaat cgcacttaaa accaccaaag
     7621 taaaaaaact ttttttagct ttaagttgtt ctttaaattc tttagaagca tcaaaaaaca
     7681 tcatcgcaaa actataaagt ccaagtacag ctccactata aacaataatt tgtatcacgc
     7741 ctaaaaactg tgcatcaagc aaaaaataaa atcccgataa aaacaccatt ccacccgcta
     7801 aagccgaaag agaataaagc atatttttac ttaaaaccgc gatgccaaaa aagcctaaaa
     7861 ccactacact aaaaaataaa aaagccaaat tttctatcat ttattttctc cttgctcttg
     7921 tgtgttttga ttttctaagg cactttcaag catcgcatcg taataatttg gcgttttttt
     7981 aacccacaaa tttgcatcct ttctaagact tcctgctcct tcaaattcaa cttgattttt
     8041 aagcttatca ataggagtta aaaaatcttg cttatagcca aaataagacc tttgctcggc
     8101 tgcattttca tactctattc catgtactat agcaagttca ggacaaacct cagcacaaaa
     8161 accacaataa atacaacgcc ctaaattaat actataattt cctacttttt tacgcccatt
     8221 ttcatctaaa gaagtttcca ttctaataca attgctaatg caaatttttt cgcaaagccc
     8281 acaacctata catctttcat tttcgctttc tataaaacgc atcaaacgat gaacagcacg
     8341 gtaacgattg tcaagcttta ccttttcaaa aggatattta atcgtagcgc tattatttct
     8401 cttaagtaat tctctcatca tcacaaaaag ccctacaaaa agctctagtt taacgcttct
     8461 acgcaaagct tgtgaaattt tctcccaagt gctaacagga gtttttcttt tctcatctac
     8521 taaataataa tttttcatat caaactccta taaaagaact gtcaaagcag tgattaaaag
     8581 atttaaaaca gctaaaggga ttaagatcaa atagcacatt ttcatcactt gatctggacg
     8641 caattgcgga aaagcagctc ttgcccaaaa ataccaaaag aaaataaaac ttgattttac
     8701 tatcatcata atccaaccag gaataatcca aaagctatta aaacccccta aaaacaaaag
     8761 agcgaccaaa atagctccag ctatcataga agtatattca cctatgaaaa acatacccca
     8821 tcttaaaccc gaatactccg ttccataacc cgctacaatt tcagcatcat tttccgtcaa
     8881 acaaagcgga gttctattag tctctataaa taaagcaatt ataaaaagca caaaagccaa
     8941 aggttgttta aaaataagcc aagaaaaaaa tccatcgctt tgataattgt taatatccac
     9001 caaagaaaaa gaacctacaa gcattataat agcaatcaaa gctaaagctc ctacgctttc
     9061 ataggaaata atcgctacaa gccctcttgc agcccctaaa atcgaccatt tattattact
     9121 tgcaagtcca cccaaaaaca ccgcataaaa gcaaagtcct gaagtaccga tgacaaaaag
     9181 caaagctaca ttgatatctg ccactatagg ctgaataacc cttccaaata aagtaaattc
     9241 aggtagcata ggaatagctg ctaaagaaat aaaagcacaa atagcagaaa tcaaaggtgc
     9301 tatagcaaaa ataaattttt gcgaatttga agggattata tcttctttag taaaaagctt
     9361 tatcatatca gctacaagtt gaataagccc aaaaggccct accatatcag gccctatgcg
     9421 tctttgaaaa taagctaaaa cctttctttc agcataagtt gcaagacctg ctaaactcgc
     9481 aaatattgca atgataataa tacatttaat caaagtctct aaagcaaaaa aagcaaaatc
     9541 actcatggtt tgctcctaat ttttctaaat tcgccacaac aaatctttca tcaaaaaagc
     9601 ttagcgtgtc aagtttttca tcaaaatacg gcaagaaagc tccatttttt atatccttat
     9661 ccacacgcac actaaggctt aattctttat cttttatttt aagttttaca agatctttat
     9721 cttttaaatt tttctcttta gctaaatttt cacttacacc taaaaaaatc acctcattaa
     9781 tcgcactagc acgatttgaa aatctaccaa attgatagct aggattagca ctataaagca
     9841 aaatttcatc ttcttttagg tttaaatttt caaaatttgg agagatgaat tcttttttag
     9901 caacttgttt aaaacattct aaattaagct catatcccct tttacaatcg cctgcattgg
     9961 tataaaaatt gtctaaatga tcaaaatcaa tcggagaaaa acctttattt atagggagtc
    10021 tcttggtata atttatagta tattcctcat caaaacctaa agcgttagcc aaatcattta
    10081 aaaaatatcc cttaaattct aaagcagcgt tagttggtac cactctttta tcataattta
    10141 aaaaagttcc ttcttgctga tttaaactcg cactagctaa atttgcatgc tcttcataag
    10201 aaaaactaaa atcacctttt tcattgtagc ctaaagtctt gccttcttgt gtattgttat
    10261 ccaaatcaca aatcatagcc acacctaagg tattagtatg cgtaggattt aaaaagactt
    10321 taaaaggagt ggtattttgg atcaaagcaa gtaatttagc aagttttttc gcatttttat
    10381 gaaaataaaa atcactccct ataacaagag taaaatttgc ttttttaagc aataaatctt
    10441 ctaatttatc ttcatctatg cctaaatttt tagcaaaaac agagcgttgt acttctatgt
    10501 tgtttttcac tttcttaggc acgacttttt ttacttcttt ttgaatttca ttgccttctt
    10561 catctttttc tatgacttgt tctacaactt cttcgttgat actttcttct atttctttat
    10621 tttcactaac aaaaaactct gctaaatgag ttttgatacc ttcatcttgg ctaaattttt
    10681 gaagtaaaaa atataaaatt tgctcttcat cgccactttt atgaatgtgc gagataaaat
    10741 ttttagaata ttttgctata cccatatctt ccataggatg aaaataaagc cctgagcctt
    10801 tatttatcac taaagcatta ttgattttat agctaagcgt tggagcatca tatcttaaaa
    10861 gcattccagc tacaaccaaa aaatcacttt ttgttatatc ttgagtatta gcgctataaa
    10921 actcaccaga attagcgata aattcttgta aaaattcttt aaatttcaaa gcttcttcat
    10981 tgatcaaaga aagattaaat ttctttttta aattttgtaa aatcaaagct tcttcattgg
    11041 taataaaact attaaattta atgtttttaa tttcattttt ctcaaaaagt tccacaagtt
    11101 ctttaaaggc tttttcatct ttatccgcct cattttgcgt atcaaaagca aatcttgcag
    11161 ccttatttaa acttgcaaag gcaaaatcat tactcacgcg ataaattttt tctttttgat
    11221 tgctaatgcc gctttgctta atatcataat acatcaactc acaatcgctt gaatgcggat
    11281 ttgaagcagg gattctttta agttcccaaa tatttgaagt gtattgaaat ttcgaaccta
    11341 ttaaagctcc tgttgggcat acgcttgtac attctccaca aaatgaacaa tcaagcgtgt
    11401 cgccatttgt agggcctatc aaactttttt gaaatttagt ccaaatcgca taagcatctt
    11461 ttcccatgct ctctttaaag ctattatcca cactatctcc gccacgagga acagtcttta
    11521 aagcactttc tccgatttta tccttacaaa ctgtaataca acgctcacac actatgcaaa
    11581 gtgcgggatc gtaattaatc attccccaat gtttatgcgg tttatgcgtg tctttaatcc
    11641 aatatttttg aacatttaca cgacttttat gagtgaaatt ttgcaattca cactcgcctg
    11701 atttatcaca aactccacat tctaaaggat gattgataca ataagcttgc atgatctcat
    11761 ttctttcatc ccaaagattt tgtaaatcac tttctacaac catgccctct tttgctttag
    11821 tattgcaaga atataccttt ttaccatcag cttcaaccat acacatacga caagccaaag
    11881 taggactaca gcccgaaaga tagcaaatcg ctgggataaa aatatcattt cttcttgcta
    11941 tatttaaaat atattcgcct tcttcaaagg cgcaatctat accattaatc ttaactgtca
    12001 ttttgcttcc tttatgcgaa ttggagtaaa atcaaaacca ttgttttcat aatttaaaaa
    12061 agctatagtg ccttgtaaat tttcatctaa acaaagcttg gttttaagac taaaatcttt
    12121 agccaaaatt tcaacttcac tttgatcttt gcattttgca atttgtaaaa attgctttga
    12181 acaatgtaaa tttttatctt gcaaatttgc tctaaaaagc actaaaccat cataattatc
    12241 gagttctttt agggtgttta attttgcctt tttaaaatcg cattcttctt catcgctatc
    12301 taaaatcttt aatccatatt ttacacttag gaaattcaaa aaatatttga tattttcact
    12361 atctttataa gaatggatat ttttatctat aattaaatac ttagtctctt ttaaaaaagc
    12421 aagcacttcg cctgcttctt cctctccaaa acaagattca gcacttaaat atccctcatc
    12481 taaatcgcaa aattgtcctt catcgcttaa tttacaaagc aaggccaaaa caaaactcaa
    12541 acttgcaatt tcgcatttgt aaaatttagc ttttaagttt ttatcttcca aacaagaaat
    12601 attaatacta tttacaccta ttttttcaca taaatttttg tttttaaggc ttggcatatc
    12661 taaaaaacaa agagcattat cataaatcat actctctcct tttttataac aatagtccaa
    12721 tcgacttgat taaatttcaa agaatttaaa agctcacagc cttgttcttt tacaaaagaa
    12781 aaactttttt caacaggaga aaaatcgccg atttcaaaaa gcaccactaa aacctcacct
    12841 tgttttgctt cttttatgat ttgtgctaaa tcttcaaaaa gctctttgct ttttcttaaa
    12901 tctacccttc tcatcgatct atctcaccta aaactatatt tacattaccc ataatggcta
    12961 caacatcagc taaataagta cctacaagca tttcttcaaa aaacgcacaa tgccaataac
    13021 taggcgttct agcctttaaa cgataaggtc ttcctgtacc atcactatgg ataaaaaagc
    13081 caagctcacc ttttggactt tcagtaggca cataaacttc gcctttaggg ggttttaaac
    13141 cttgagtgat taaaacaaaa tgctgcatta aagaataatt ctgcgttaaa atttgttcct
    13201 ttgaagcact tacatactca ggatgcgtag ctaaaatttc aggtggggta tctttataaa
    13261 gcgtggcaca ttgtctaagg attttcaaac tttcacgaaa ttcttgcata taaactttat
    13321 atcttgcata agaatcccct tgcatagcat aaggcacacc aaattcaact tcattataaa
    13381 gcaaataagg ctcttctttg cgtatatcgt attttatgcc acttcctctt aacatcacac
    13441 ctgtacaacc ccaatttaag gcttgttctt tagtaactac acctacattt tcagttctta
    13501 aacgccaaat tctattatca tctaaaagat cttcataatc ttttaaatca tttggaaatt
    13561 tatcgcaaaa tgcaagcatt tcttctaaat aattttcagg taaatcaagc ataaccccgc
    13621 ctattctcat agaagaatgt gtaagccttg caccacaata cttttctatc aaatccaaaa
    13681 catattctcg ttctctaaag cagtataaaa acacactcat cgcaccaata tcaagcgcat
    13741 gagtagcaag ccaaagcaaa tgcgatgtga tacggtttaa ttctaaaagt atcatgcgta
    13801 tcactgcggc acggcgtgga atctctaaac cacaaagctt ttcaaccgct gcacaataag
    13861 cataattatt cgctgaagca gcgatataat ccattctatc agtagtagga ataaactctt
    13921 gataaatcat attttcagcc attttttcca taccacgatg catataacct atacaaggac
    13981 gcgcttttac aacttgctct ccatcaagtt ctaaaataag gcgtaaattt ccgtgtgctg
    14041 aagggtgttg agggcctaag ttgataatca tttttgagtc ttcttgctca aaagctatat
    14101 tttcataata aggttttaac ttgctaggaa tttgcatttt aacgcctttt ctctaaaatt
    14161 tttgcttcat cacgttttac tttttttaca aaagccacac cttcatcttc ttgatattct
    14221 tgtttaaagg aaatttcctt cttttgacca ccttttggca cttcatggta aagtcttgca
    14281 aaatttagcg tatctttatc atcagcaaaa ccagaatctc tttgttcttc gcccactact
    14341 tcacgatatt ctttgccaaa aattttatca atctcatacc atcttgcaaa ctcatcgccc
    14401 tttaaaggat aagttttcaa aagcggatgt ccaaaccaat catcaggcat taaaatgcgt
    14461 tttaaattgg gatgatttat gatgaaaatt ccaaacatat cataaatttc tctctcactc
    14521 caatttgccc ctttaaaaac atgagccacg ctttgtaaac gctcttttac gcctacaaaa
    14581 gtttttattc tcactcttaa ttttttttct aaatttaaaa gctgataaaa cacttcaaaa
    14641 ccatttttac ttgctataaa atcaatagcg cttgcttctg taaaacttaa ataccctaaa
    14701 gttttaagca tttgcaaagt tttaacattg tcttcttttt taatttctat tacccaaaaa
    14761 tcaagttcta caaaggaatt taaaatttct acttgagttt ttaaaacttc aaaatcctct
    14821 ttaaaaacac tttcattaac atcagatttt acagtgtgtg gcgcgtgata aaatctatct
    14881 ttgtagtaat tttgagtttg agcatttttt ttatcgctat actttctcat tataccaacc
    14941 ttttaggtgc gattttacga cttgcttttt ctttgcggat ctttttttgc aaaatcatca
    15001 aagcaaactg aaaactttct ggacgtggag cacagcctgg cacataaata tctacaggta
    15061 taattctatc cactccttga acagtagaat aagtattaaa cataccgcct gtattggcac
    15121 aacttcccat agaaatcacc catttaggat caggcatttg atcataaagt cttcttgtaa
    15181 attcagcatg ctttttacat aaagttcctg cgataatcat cacttcacta tggcgtggcg
    15241 aagctctaaa aatcgttcca aatctatcaa aatcatatct tgaaccccca gccgccatca
    15301 tctcaatcgc acaacaggca agtccataag ataaagccca taaagaatta ctcctacccc
    15361 attgaactag tttatcaaca ctagttaaaa ctacgggtaa accacttgca taatttattt
    15421 gatgctctgc catgcaaacg ctcctttttt ataagcatat aaaaatccaa ctcctaaaag
    15481 tacgataaaa acaaaaactt ctaaaagtcc aaaccaacct aaatctttaa aaatcaatgc
    15541 ccaaggaaac aaaaacacaa cttctatatc caaaagtatg aagattaagg cgatgatgaa
    15601 aaattgagag ttaatcttgt tagcttgttt aacaggaata ggaccacatt cataaattcc
    15661 aagtcctaat tttttgcgat tttttgcggc aaaattatta ccgatttttg aagctaaaaa
    15721 aaccagtcca aaaaaaataa cactagcaag tactagcatt aaaaaaatac caaaataagg
    15781 atgcgaagca tctatatgag acatttattc tcctttttta aagcacttta atcactccac
    15841 aacaaaaatt aaatttacac ttttctttat tt
//
LOCUS       DBBXPZ010000039        15494 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.041, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000039 DBBXPZ010000000
VERSION     DBBXPZ010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15494)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15494)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15494
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.041"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            37..438
                     /locus_tag="ACJFD7_000993"
     CDS             37..438
                     /locus_tag="ACJFD7_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HGG0859813.1"
                     /translation="MIYNEKIISMNNDLLDHQHKELFEISKKLSLMNQCHVGTKELKI
                     VLRELLIMINRHFSDEEAFMRKIEYPYINHHTRIHRKIILEIEEIIISEAKFVNIMTE
                     KLNLVVQDFIFKHTAKEDSKIVKYYEEKFKK"
     gene            627..1808
                     /gene="iscS"
                     /locus_tag="ACJFD7_000994"
     CDS             627..1808
                     /gene="iscS"
                     /locus_tag="ACJFD7_000994"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NifS family cysteine desulfurase"
                     /protein_id="HGG0859814.1"
                     /translation="MKVYLDNNATTMLDPNAYELMLPFLKDMYGNPNSLHQYGSATHP
                     ALREALDKLYAGLGANDLDDIIVTSCATESINWVLKGVYFDHILDRERNEVIISSVEH
                     PAVATAAYFLKSLGVKVIELPVNEEGVSTVEDLRKVISDKTALVSVMWANNETGMIFD
                     IKAMAELAHEFGALFHTDATQAVGKIKVNLTQVGVDFASFSAHKFHGPKGVGGLFIKK
                     GLKLTPLLHGGEHMGGRRSGTLNVPYIVAMGEALRIANTMLDFEDSHIRRLRDKLEDQ
                     ILALPDTTVVGKREHRVPNTILASIKGVEGEAMLWDLNKNGIAASTGSACASEALESN
                     PIMEAIGAEHDLAHTALRLSLSRFNTEEEIDYAAKQIKNATQRLRAISCTYAYNPNNY
                     K"
     gene            1818..2789
                     /locus_tag="ACJFD7_000995"
     CDS             1818..2789
                     /locus_tag="ACJFD7_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein
                     NifU"
                     /protein_id="HGG0859815.1"
                     /translation="MGKNSLIGGSIWDEYSQKVQDRMNNPQHMGEFSEEDAKARNAKL
                     IVADFGAESCGDAVRLFWLVDEKTDKIIDAKFKSFGCGTAIASSDTMVDLCIGKTVDE
                     AVKITNLDVEFAMRDNPETPAVPPQKMHCSVMAYDVIKQAAAHYKGISPEDFEDQIIV
                     CECARVSLGTIKEVIKLNDLHSVEEITQYTKAGAFCKSCIKPGGHEKRDYYLVDILAE
                     TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQK
                     AEGAAIDVYIRYLGACSGCSSGSGATLYAIETILQEELSPNIRVMPV"
     gene            complement(2812..4695)
                     /locus_tag="ACJFD7_000996"
     CDS             complement(2812..4695)
                     /locus_tag="ACJFD7_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HGG0859816.1"
                     /translation="MKKIIFSLCFFILYLGAQEFKFIDANISKEDEGIYALVEKYVDL
                     NNQIKEFKKNNDENSSTFNGILSEFEKDKKTILAKIPDMIVGQKIDEEAVARFLKAKE
                     KLLDVQKKNINKPYIYTDATLNLVYFNIVESFYSSLFELEKLFKNTASSEDLIATVDK
                     AMENLQNSSNVNLDSFKSKITNSEELEKITLKERYISNAVDSYSEILKYLRSNADLLE
                     SNYIFSLLELQVWIDRINEAIGVSFVNIGKIVISALVLVFFISLRRFFANIVYFFLVQ
                     FFYRNKNDVDDIKVIFIENIKKPVGFLLIVYAISLCLTIATYPAPLSVNLSNFFHIVY
                     AVLIAWLILRMLDGYGVVLVSKLAQKSGKKEVVNLIIKILYFVIIIIALLYILAQLGF
                     NISAIIASLGIGGLAVALAAKDIIANFFASILLLFDNSFNQGDWVEVSGIEGTVVETG
                     LRKTTIRTFDNCLVFLPNSTIMGANIKNWSKRRMGRHVRMYLGVGYDATPEKLEQCVK
                     DLREFLHTSDLVAHDEDSALKYGDHTTKYRQNLVSINDLEGYKNACYVALSEFADSSI
                     NIELYFYIKEIGGKDFREARQSLMLEFMRIIEKNGLTFAFPSRSIYIENLPPLDLQAK
                     AIK"
     gene            complement(4692..5327)
                     /gene="cynT"
                     /locus_tag="ACJFD7_000997"
     CDS             complement(4692..5327)
                     /gene="cynT"
                     /locus_tag="ACJFD7_000997"
                     /EC_number="4.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004089 - carbonate dehydratase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HGG0859817.1"
                     /translation="MENLISGAIKFMQEDFKEHEELFESLKNKQNPHTLFIGCSDSRV
                     IPNLITNTGPGELFVIRNIANIVPPYRIGEDYLATTSAIEYALNSLHIKNIVVCGHSN
                     CGGCNALYYSDEELNKIPNVKKWLTMLDPIKKDVMIFARDDLAMRSWLTEKLNLVNSL
                     QNILTYPGVQEALDEGKIEVHAWYYIIETGEIYEYDFKAKIFTLIQDRKVQ"
     gene            5488..6183
                     /locus_tag="ACJFD7_000998"
     CDS             5488..6183
                     /locus_tag="ACJFD7_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HGG0859818.1"
                     /translation="MSLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGA
                     YVGIFALASFFIQSQVTFWILFAVEIGLLFALQWKKREAPLNLVLLFGFTFCSGLTLT
                     PLLISVLALPAGGIIIAQAFALTTVAFAGLSVFAMNTKKDFTVMGKALFIVLIVIVAA
                     SLLNLFFQSSIVNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLF
                     VSLLNILRSFNSR"
     gene            6286..6657
                     /gene="secG"
                     /locus_tag="ACJFD7_000999"
     CDS             6286..6657
                     /gene="secG"
                     /locus_tag="ACJFD7_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015136 - sialic acid transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015739 - sialic acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HGG0859819.1"
                     /translation="MITLLIILQFIIVVVICIAVLLQKSSSIGLGAYSGSNESLFGAK
                     GSAGFLAKFTFVMGILLIANTIGLGYLYNKASKDSLAEKIKVENNNTTIPSAPIVPAT
                     PNTNSIAPSAPQLPSDVNSSK"
     gene            6667..7230
                     /gene="frr"
                     /locus_tag="ACJFD7_001000"
     CDS             6667..7230
                     /gene="frr"
                     /locus_tag="ACJFD7_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HGG0859820.1"
                     /translation="MIMLSEIFNKQKTQSEKSLEALKKDFTTLRTGKVNTHILDHITV
                     DYYGTQTPLNQVATVLASDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKL
                     FFPPMTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYD
                     EVQKLTDAYTIKIDESVKSKESELLKV"
     gene            7233..7841
                     /gene="pyrE"
                     /locus_tag="ACJFD7_001001"
     CDS             7233..7841
                     /gene="pyrE"
                     /locus_tag="ACJFD7_001001"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0019856 - pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HGG0859821.1"
                     /translation="MNLEQIYKGCGAYLEGHFLLSSGKHSQFYLQSAKVLENPKLAAK
                     LCDELAKIIASYKIEFDSICSPALGGILAGYELARACSKRFIFTERVNKEMTLRRGFE
                     VKKGEKFIICEDIITTGGSALESAKIIESLGGIVVGFAALANRGFCVVENLKSPRKDN
                     AKLPENLPLFTLGNFEFEIYDETNCPLCKKGSKAIKPGSRGN"
     gene            7842..8252
                     /locus_tag="ACJFD7_001002"
     CDS             7842..8252
                     /locus_tag="ACJFD7_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HGG0859822.1"
                     /translation="MKTKAKISSRWLRFRALLIDIFLIYVPILYLFYFLLGSKEAFLN
                     NHFITTLCTFLFGLIQAIFLTKKAQSPGLKAYDLYLIDIKTGKKLSFLRILLRYVIFI
                     ISFGLLFGLFVSFVRKDRLNLHDILTQSCIATKA"
     gene            8266..9288
                     /gene="nrdB"
                     /locus_tag="ACJFD7_001003"
     CDS             8266..9288
                     /gene="nrdB"
                     /locus_tag="ACJFD7_001003"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009263 - deoxyribonucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HGG0859823.1"
                     /translation="MQRKRIYNPSSNETLGDRKIFDGNPHGILNFTKAKYTWALKLWD
                     LMEANTWFPKEVDTTKDALDYRCNLTVGEKRMYDLVWSQLISMDSFQTNNLADNINPY
                     ITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSI
                     YEELAGNVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDE
                     ITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTD
                     DIIEEYIHYLVDQRLSAINLDKLYNAKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS
                     ISFDDF"
     gene            9275..10648
                     /locus_tag="ACJFD7_001004"
     CDS             9275..10648
                     /locus_tag="ACJFD7_001004"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004516 - nicotinate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HGG0859824.1"
                     /translation="MMTSKTSLALLCDFYEFTMSQGYFKNNKKDQICYFDIFFRKIPD
                     SGSFAIFAGLEDILDFVENLSFDAEDIEFLRKQGIFDTEFLDFLANFKFKGEIYAMRE
                     GEVIFPNEPLLCIKATTIEAQLLETFLLLSLNHQSLIATKTNRIVRAAKDSKILEFGS
                     RRAQGSEAALKGARAAFIGGCIGSACTLAGKIYNIPINGTMAHSWVQMFENELEAFKA
                     YVKIYPKNPVFLIDTYDCLNSGLKNAIKVFKEFGIQEGGVRIDSGNLLKLSLKIRQEL
                     DQAGLQKCKIIVSNALDEWSIKKLKEQNAPIDIFGVGERLITASSDPIFSCVYKLAAL
                     EDQGIKPKIKISENNEKSTLPHFKKLFRVYDKNTQKILFDELYVFDENPNQDENLERK
                     ELLKLVYKEKRLLKKSSLNTIQDYTKEQISKLDENFLDLDRFVKFEVKLSPKLQNITE
                     DLLKTRF"
     gene            complement(10617..11165)
                     /locus_tag="ACJFD7_001005"
     CDS             complement(10617..11165)
                     /locus_tag="ACJFD7_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HGG0859825.1"
                     /translation="MLIKFKNHSPKLGQNVFVAEGAKIIGEIEIGDESSIWFNCVLRA
                     DVNFIKIGKRTNIQDLSTVHVWHREFDEKGKLKDAGFPTIIGDDVTIGHNCVIHACVI
                     KNRVLIGMNAVIMDSALIEEDSIVGAGSVVTKGKKFPPRSLILGNPAKFVRELNNEEI
                     NFLKQSALNYVDFKNEFLKDLQ"
     gene            11254..11883
                     /gene="pcm"
                     /locus_tag="ACJFD7_001006"
     CDS             11254..11883
                     /gene="pcm"
                     /locus_tag="ACJFD7_001006"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004719 - protein-L-isoaspartate
                     (D-aspartate) O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HGG0859826.1"
                     /translation="MNAFEQKRCQNMAEEIAQKVFINEELFNAFCQIPREIFSPLKAH
                     AYRLDALPLANSQWISSPLTVAKMTMALDFKNADSILEIGCGSGYQAAILSKVIRRVF
                     TIERIENLAKKAAQTFRELELFNINVKFDDGQNGWKNYAPYDRILFSAYATQIPEILL
                     DQLSDDGILVAPILHNGKQFITRLRKNGTNLQKEILEECLFVPIVDGKE"
     gene            complement(11903..13090)
                     /gene="argD"
                     /locus_tag="ACJFD7_001007"
     CDS             complement(11903..13090)
                     /gene="argD"
                     /locus_tag="ACJFD7_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HGG0859827.1"
                     /translation="MKMDYKEQSHIVPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSG
                     IGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSG
                     TESIEGAMKTARKYAFNKGIKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISG
                     VKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIA
                     DEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHG
                     STYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELIKEFDFCKKRKGLGF
                     MQGLSLNKSVKVFKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKAL
                     KSF"
     gene            complement(13094..13939)
                     /gene="argB"
                     /locus_tag="ACJFD7_001008"
     CDS             complement(13094..13939)
                     /gene="argB"
                     /locus_tag="ACJFD7_001008"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HGG0859828.1"
                     /translation="MIMQKYLEKANVLIEALPYIRKFNSKIILIKYGGSAMENEELKH
                     CVMQDIALLKLVGLKPIIVHGGGKDISAMCEKLGVKSEFKNGLRVSDKATIEVASMVL
                     NHINKNLVHSLQNLGVKAIGLCGKDGALLECVKKDENLAFVGTIQKVNSKILEELLEK
                     DFLPIIAPIGMDEDFNTYNINADDVACAIAKALRAEKLAFLTDTAGLYEDFSDKNSLI
                     SKISLEQAKILAPKIEGGMHVKLKSCIDACENGVKKVHILDGRVKHSLLLEFFTDEGI
                     GTLVG"
     gene            complement(13943..14389)
                     /locus_tag="ACJFD7_001009"
     CDS             complement(13943..14389)
                     /locus_tag="ACJFD7_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HGG0859829.1"
                     /translation="MLIRAMQKSDYEAVYKLWCEIKGFGIRSIDDSKENIENFLDRNP
                     NLSVVVVIDEEIVGSILCGHDGRIGGFYHVCVHKDHRKKGIAHEMTKFCLEALKAQKI
                     NKIALIAFKNNDLGNEFWKHYGFTLREDANYYDLSLNEYNQTSFNA"
     gene            complement(14399..15427)
                     /gene="argC"
                     /locus_tag="ACJFD7_001010"
     CDS             complement(14399..15427)
                     /gene="argC"
                     /locus_tag="ACJFD7_001010"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0070401 - NADP+ binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HGG0859830.1"
                     /translation="MKIKVGILGASGYAGNELVRILLNHPKVEISYLGSSSSVGQNYQ
                     DLYPNTPLNLCFENKNLDELELDLLFLATPHEFSAKLLNKNLLKKMKIIDLSADFRLK
                     NPKDYELWYKFTHPNQELLQNAVYGLCELYKEEIKKASLVANPGCYTTCSILSLYPLF
                     KEKIIDFNSVIIDAKSGVSGAGRSAKMENLFCEVNENIKAYGLASHRHTPEIEEHLSY
                     AAKEKITLQFTPHLVPMQRGILISAYANLKEDLQEQDIRDIYTKYYQNNKFIRLLPPQ
                     SFPQTRWVKSSNFADINFSVDQRTKRVIVLGAIDNLIKGAAGQAVQNMNLMFDFDEDE
                     GLKFFANL"
BASE COUNT         5426 a         2511 c         2344 g         5213 t
ORIGIN      
        1 ctctcgaaaa atataaatat aaaagtactc aaaaccatga tttataatga aaaaattatt
       61 tcaatgaata atgatctttt agatcatcaa cataaagaac tttttgaaat ttctaaaaaa
      121 ctctctttaa tgaaccaatg tcatgttgga acaaaagaat taaaaattgt cttaagagag
      181 ttgttgataa tgatcaatag acatttttca gatgaagaag cctttatgag aaaaatagaa
      241 tatccttata tcaaccatca tacaagaatt cacagaaaaa ttatcttaga aattgaagaa
      301 attatcatca gtgaagctaa atttgtaaat ataatgaccg aaaaattaaa tctcgttgtt
      361 caagatttta tctttaaaca tacagccaaa gaagattcaa aaatagtaaa gtattacgaa
      421 gaaaaattta agaaatagta tttctcattt ttgctatata aaattcacaa aatatttcac
      481 tttaaaattt tactttagca ttttattttt gttataattt ttaacctaat ttttataaat
      541 ttttgttatt atccattttc aaataaagat aaaaaatatc ctaattaaaa ttaaggataa
      601 attaaggata aattaaggat tttaaagtga aagtatattt agataacaac gcaacgacaa
      661 tgcttgatcc taatgcttat gagttgatgc tacctttttt aaaggatatg tatggaaatc
      721 caaatagcct tcatcaatat ggtagcgcaa cacatcctgc cttaagagaa gctttggata
      781 aactttatgc aggacttgga gcaaatgacc tagatgacat aattgtaacc tcctgtgcga
      841 cagaaagcat taactgggtg cttaagggtg tgtattttga tcatatttta gatagagagc
      901 gcaatgaagt gattatttct agtgtagaac accctgctgt tgctactgct gcttattttt
      961 taaaaagtct tggagtaaaa gtcatagaac ttcctgtaaa cgaagaagga gtttctactg
     1021 tagaagattt gcgtaaagtg attagcgata aaacagcact tgtaagtgtt atgtgggcaa
     1081 ataatgaaac aggtatgatt tttgatatta aagcgatggc agaacttgcg catgaatttg
     1141 gtgctctttt tcatacagat gctactcaag cagtaggtaa aataaaggtt aatttaactc
     1201 aagtaggagt tgattttgct tcattttcgg cacataaatt tcatggacca aagggtgtgg
     1261 gtggactttt tataaaaaaa ggacttaagc ttactccact tttacacggt ggagaacaca
     1321 tgggtggtcg tagaagcggg actttaaatg tgccttatat agtggctatg ggcgaggctt
     1381 tgcgtattgc aaatactatg cttgattttg aagattctca tatacgccgt ttaagagata
     1441 aactagaaga tcaaatttta gccttgcctg atacaacagt ggttggaaaa agagaacacc
     1501 gtgtgcctaa tacaatctta gcaagtatta aaggagttga aggcgaagca atgctttggg
     1561 atttaaataa aaatggtata gctgcaagta cgggctcagc ctgtgcaagt gaagctttag
     1621 aaagcaatcc tattatggaa gctatcggtg cggagcatga tttagcgcat acagctttaa
     1681 ggctttcttt gtcacgtttt aacactgaag aagaaattga ttatgcagca aaacaaatta
     1741 aaaatgcaac acagagatta agagcaattt cttgtactta tgcttataat ccaaataatt
     1801 acaaataagg atgaaaaatg ggaaaaaata gtttaattgg tggatccatt tgggatgagt
     1861 attcacaaaa agttcaagat agaatgaata atcctcaaca tatgggagaa tttagtgaag
     1921 aagatgctaa agcacgcaat gcaaaattga tcgtagctga ttttggtgca gaaagttgcg
     1981 gcgatgcggt aagacttttt tggcttgtag atgaaaaaac tgataaaatt atcgatgcaa
     2041 aatttaaaag ttttggttgt ggtacagcta tagcaagtag tgatactatg gtggatcttt
     2101 gtataggaaa aactgtagat gaagcagtaa aaatcacaaa tttagatgtg gaatttgcta
     2161 tgcgtgataa tccagaaact ccagctgttc cacctcaaaa aatgcactgt tcggttatgg
     2221 cttatgatgt aatcaaacaa gcagcagcgc attataaagg tataagtcct gaagattttg
     2281 aagatcaaat tatagtttgc gagtgcgcta gggtaagtct tggaactatt aaagaagtga
     2341 ttaaacttaa tgatttgcat agcgtagaag aaatcacaca atacactaaa gcgggtgctt
     2401 tttgtaaatc ctgtatcaaa ccaggcggac atgaaaaaag agattattac cttgtagata
     2461 ttttagctga aactagagct gaaatagata gagaaaaact caaaaataca atgaaaagtg
     2521 atgtagcttt tgatgaaatg accgtagtgg gacaattaaa agcagttgaa agtgttttag
     2581 atgctgaaat tcgccctatg cttcataatg atggtggaga tttggaagtg attgatatac
     2641 aaaaggctga aggtgcagca attgatgttt atattcgtta tcttggtgct tgtagtggtt
     2701 gttctagtgg aagtggtgca acactttatg ctattgaaac aattttacaa gaagaattaa
     2761 gtccaaatat acgcgttatg ccggtttaaa aaatagcaag ataaaatctt gctattttat
     2821 agcttttgct tgcaaatcaa ggggtggtaa attttctata taaatactac gacttgggaa
     2881 agcaaaggtt aaaccatttt tttcaattat acgcataaac tcaagcatta aactttgtct
     2941 agcttctcta aaatcttttc cacctatttc tttgatataa aaataaagct ctatattaat
     3001 actactatct gcaaattcac ttaaagccac ataacaagca tttttatagc cttctaaatc
     3061 attaatagat acaagatttt gacgatattt tgttgtatga tcgccatatt ttaatgcgct
     3121 atcctcatcg tgagctacta aatcacttgt atgcaaaaat tctcttagat cttttacaca
     3181 ttgttctagt ttttcaggag tagcatcata accaacaccc aaatacattc taacatggcg
     3241 acccatgcgt cttttgctcc aatttttgat attagctccc ataatagttg aatttggtaa
     3301 aaatacaaga caattatcaa aagttctaat agtagttttt ctaagtcctg tttcaaccac
     3361 ggttccttct atgcctgaaa cctctaccca atctccttga ttaaagctat tatcaaaaag
     3421 taagagtata gaagcaaaga aatttgcaat gatatctttc gccgctaaag caacagctaa
     3481 accaccaatt cccaaagatg caataatagc cgaaatatta aaaccaagtt gagcaagaat
     3541 atataataaa gctataataa taatgacaaa atataaaatt ttaataatta aatttacaac
     3601 ttcttttttt ccactttttt gagcaagttt agaaaccaat accacgccat aaccatcaag
     3661 cattcttaaa ataagccatg caattaaaac tgcataaact atatgaaaaa aattacttaa
     3721 atttacactc aaaggtgcag gataagttgc tatagtaaga caaagagaaa tagcatagac
     3781 aatcaacaag aagcctacgg gttttttaat attctcaata aaaatgactt taatatcatc
     3841 tacatcattt ttatttctat aaaaaaactg aacaaggaaa aaatatacta tatttgcaaa
     3901 aaaacgtctt aaagatataa aaaatactaa aaccaaagca gaaattacta tttttccgat
     3961 attaacaaaa cttaccccaa ttgcctcatt tatacgatct atccaaactt gaagctcgag
     4021 taatgaaaaa atataattac tttcaagcaa atctgcattt gagcgtaaat acttaagaat
     4081 ttcagaataa gaatctacag cattactgat atatctttct tttagggtaa ttttttctaa
     4141 ttcttctgaa tttgtaattt tgcttttaaa actatctaaa ttaacattag aagaattttg
     4201 taaattttcc attgccttat caacagtagc aatcaaatct tcactgcttg ctgtattttt
     4261 aaaaagtttt tccaattcaa acaaagaaga ataaaaactt tccacaatat taaaataaac
     4321 tagattaaga gtggcatctg tataaatata aggcttatta atattctttt tttgaacatc
     4381 tagtaatttt tcttttgctt ttaaaaatct agccactgcc tcttcatcaa tcttttgtcc
     4441 tactatcata tcgggtattt ttgctaaaat agtctttttg tctttttcaa attcacttaa
     4501 aataccatta aaagtgcttg aattttcatc attgtttttc ttaaattctt taatttgatt
     4561 gttaagatca acatattttt caactaaagc ataaattcct tcatcctctt tactaatatt
     4621 cgcatcaata aatttaaatt cttgtgctcc aaggtataaa ataaaaaaac ataaactaaa
     4681 aataattttc ttcattgaac tttcctatcc tgtattaaag taaaaatttt tgctttaaaa
     4741 tcatactcat aaatttcacc tgtctctata atataatacc aagcatgtac ttctattttt
     4801 ccttcatcta aagcttcttg cacgcctgga taagtaagta tattttgcaa agaatttact
     4861 aaatttaatt tttctgtaag ccatgaacgc atagccaaat cgtctcttgc aaaaatcatt
     4921 acatcttttt ttatcggatc taacatagta agccattttt tcacattagg aattttattt
     4981 aactcttcat cagaataata aagagcattg caacctccac aattactatg gccacaaacg
     5041 acgatatttt taatatgcaa tgaatttaaa gcatactcta ttgctgaagt tgtcgctaag
     5101 taatcttccc caatgcgata aggtggaact atatttgcaa tatttcgtat tacaaaaagc
     5161 tcacctggac ccgtattggt gatcaaattt ggaattactc tagaatcaga acaacctata
     5221 aaaagagtat ggggattttg cttatttttt agactttcaa aaagttcttc atgctcctta
     5281 aagtcttctt gcataaactt aatcgcacca ctaataagat tttccataaa accaacctga
     5341 aactaaaatc ttgaaattat aacaaaattt cagcaaagat ttcatttaat cataaagata
     5401 ttatataaat taacttttta tttagtctaa tatgttagat ttcgctcaag attttaaaaa
     5461 atctaacaat tttgcaagga gaattttatg agtctttatg atagagacta ctcaagatca
     5521 aaagaatttg aaaatacacg ctcaagcgaa ttaagtattt ttattaaaca aacttatcaa
     5581 ctttttgctg cttcattatt agctgcaaca gtaggtgcgt atgtaggaat ttttgcttta
     5641 gcatcatttt ttatacaatc acaagtaact ttttggatcc tttttgctgt tgaaatcgga
     5701 cttttatttg ctttgcaatg gaaaaaaaga gaagctccat taaatcttgt tttacttttt
     5761 ggttttactt tctgctcagg tttaacgctt acacctttac ttatttcagt tttagctcta
     5821 ccagctggag gaattatcat cgctcaagct tttgctttaa caacagttgc ttttgcagga
     5881 cttagtgtat ttgctatgaa tacaaaaaaa gattttactg ttatgggtaa agctttattt
     5941 atagtattaa tcgttattgt agcagcatct ttactaaacc ttttcttcca aagcagtata
     6001 gttaatctag ctatttcagc agtagctgca atattatttt cattttacat tctttatgat
     6061 acgcaaaata ttatccgcgg aaattatgaa actccaatcg aaggtgcagt agcactttat
     6121 cttgattttg ttaatctttt cgtatcttta cttaatatct taagaagctt caatagcaga
     6181 taaatttttg tgggattttt ctcacaaaac ttttcaagtt tcaaaacttt tcaagtttta
     6241 tttagttaaa ataatcattt aaaaattaac ttttaggaat tttcaatgat cactctttta
     6301 atcattttgc aatttatcat cgttgtagtt atttgtatag cagttttact tcaaaaaagt
     6361 tcaagtatag gacttggagc ttatagtgga agcaatgaaa gtttatttgg cgccaaagga
     6421 tcggctggat ttttggcaaa atttaccttt gtcatgggaa ttttacttat tgcaaatact
     6481 attggtcttg gttatttata caataaagct agcaaggact ctctagcaga gaaaattaaa
     6541 gtagaaaaca acaacactac tattccaagc gctcctattg tgcctgctac cccaaacaca
     6601 aattctatcg ctccaagtgc gccacaactt ccaagcgatg ttaattcaag taaataatta
     6661 aaggaaatga taatgctaag tgaaattttt aacaaacaaa aaacccaaag tgaaaaatct
     6721 ttagaagcct taaaaaaaga cttcaccact ttaagaactg gaaaagttaa tacccatatt
     6781 ttagatcata ttacagtgga ttattacgga actcaaactc ctttaaatca agtagcaact
     6841 gttttagcaa gcgatgcttc aactattagc atcactcctt gggaaaaacc tttactaaaa
     6901 accatagaaa gtgctattgc agctgcaaat atcggtgtaa atccaaacaa tgacggcgaa
     6961 agtgtaaaat tatttttccc tccgatgact agagagcaaa gagaagaaaa tgtaaagcaa
     7021 gctaaagcta tgggtgaaaa ggcaaaagtt tctataagaa atatacgcaa agatgccaac
     7081 gatgcagtta aaaaactaga aaaagataag gcaataagcg aagatgaagc aaaaaaagct
     7141 tatgatgaag tgcaaaaact taccgacgcc tacacaataa aaattgatga gagtgtaaaa
     7201 agtaaagaaa gtgaactttt aaaggtttaa tgatgaattt agagcaaatt tataaaggtt
     7261 gtggtgctta tttagaaggg cattttttac taagttcagg taaacattcg caattttatc
     7321 ttcaaagtgc aaaagtttta gagaatccaa aattagcagc aaaactttgt gatgaacttg
     7381 caaagattat tgcaagctat aagatagaat ttgatagcat ttgttctcct gctttaggtg
     7441 gaattttagc aggttatgag cttgcgagag cttgtagtaa acgttttatc ttcactgaaa
     7501 gagtaaataa agaaatgact ttaagacgtg gttttgaggt gaaaaagggt gaaaaattta
     7561 taatttgtga agatatcatt actacaggtg gtagtgcttt agagagtgca aaaatcattg
     7621 aaagtttagg tggcattgtt gtaggttttg cagcattggc aaatcgtggt ttttgtgtag
     7681 tagaaaattt aaaatctcca agaaaagata atgcgaaatt acctgaaaat ttaccactct
     7741 ttactctagg aaattttgaa tttgaaattt atgatgaaac aaattgtcca ctttgtaaaa
     7801 aagggagtaa agctataaaa ccaggaagcc gtggaaatta aatgaaaact aaagcaaaaa
     7861 ttagctctag atggctaaga tttagagctt tgcttataga tatttttctt atttatgttc
     7921 ctattttgta tttattttat tttctattag gctctaaaga agctttttta aacaaccatt
     7981 ttatcacaac tttatgtact tttttatttg gtttgattca agctattttt ttaacaaaaa
     8041 aggcacaaag cccaggtctt aaagcatatg atttatatct tattgatata aaaacgggaa
     8101 agaaactaag ttttcttaga attttactaa gatatgtgat atttattata agttttggct
     8161 tactctttgg tttatttgtc agttttgtaa gaaaagatcg tttaaattta cacgatattt
     8221 taactcaaag ttgtatagct actaaagcat aaagaaaggt taaaaatgca aagaaaaaga
     8281 atttacaatc caagttcaaa cgaaacccta ggagatcgta aaatttttga tggtaaccca
     8341 catggaattt taaatttcac taaggcaaaa tatacctggg ctttaaaact ttgggattta
     8401 atggaggcaa atacttggtt tccaaaagaa gtggatacaa ctaaagatgc acttgattat
     8461 cgctgtaatt taactgtagg tgaaaaaaga atgtatgatt tggtttggag tcagcttatt
     8521 tctatggata gttttcaaac caataattta gcagataata tcaaccctta catcacagct
     8581 cctgaaatca atgcggtttt ggcacgccaa gcttatgaag aagcaaacca ttcaaaatct
     8641 tacgctgtta tggttgaagc gatttgcgat aatacagatt tgatttatga aatggaaaag
     8701 catgatgaaa ctttgcgtga aaaaaatgac tttatttcaa gcatttatga agaattagca
     8761 ggcaatgtag atgataataa actgcttttg gctatggtgg caaatcaaat tttagaagga
     8821 gtatattttt atagtggttt tactgccatt tacgcacttg cacgtgcagg aaaaatgcta
     8881 ggttcagcac aaatgatccg ctttatccaa agagatgaaa tcacacatct tttattattt
     8941 caaaatatga tcaattcagt acgcaaagaa agacctgatt tgttccatga tgaaaatatc
     9001 aataaaattt atgatatgtt taaaaaagct ggagatcttg agatcaaatg gggtaaatac
     9061 atcactcaaa atcaaatcat gggctttact gatgatatca tagaagaata tatccattat
     9121 cttgtagatc aaagattaag tgcgatcaat ttagataagt tatataatgc aaaacatcct
     9181 attaaatggg tagatgattt ttcaaaattt aacgatcaaa agagcaattt ctttgaaagt
     9241 aaagtaacga attattctaa gggtagtata agctttgatg acttctaaaa cttctttagc
     9301 cttactttgt gatttttatg aatttacaat gtctcaaggc tatttcaaaa acaataaaaa
     9361 agatcaaatt tgttattttg atatattttt tagaaaaatt ccagattcag gatcttttgc
     9421 tatttttgca ggtcttgaag atattttaga ctttgttgaa aatttgagtt ttgatgcaga
     9481 agatatagaa tttttaagaa aacaaggtat ttttgataca gaatttttag attttttagc
     9541 taactttaaa tttaagggtg aaatttatgc tatgcgtgaa ggagaagtga tttttccaaa
     9601 cgaacctttg ctatgtatta aagctacaac catagaagca cagcttttag aaactttttt
     9661 acttttaagt ttaaaccacc aaagccttat tgctaccaaa accaatcgta tcgtgcgtgc
     9721 agctaaagac agtaaaattt tagaatttgg ttcacgcaga gcacaaggaa gtgaagcagc
     9781 cttaaaagga gcaagagcag cttttatagg aggttgcata ggaagtgctt gtactttagc
     9841 aggaaaaatt tataatatcc ctatcaatgg aactatggca cattcttggg tgcaaatgtt
     9901 tgaaaatgaa cttgaagctt ttaaagctta tgtgaaaatt tatccaaaaa atcctgtttt
     9961 tttgattgat acttatgatt gtctaaatag cggacttaaa aatgcgatta aagtttttaa
    10021 agaatttggt attcaagaag gcggcgtgag aatagattct ggaaatttac ttaagttgag
    10081 tttgaaaatc agacaagaac ttgatcaagc aggacttcaa aaatgtaaaa tcatagtttc
    10141 taacgcactt gatgaatgga gcattaaaaa actcaaagaa caaaatgcac ccattgatat
    10201 ctttggtgta ggtgaaagat tgatcactgc ttcaagtgac cctattttta gttgcgttta
    10261 taaactcgca gccttagaag atcaaggcat aaaacctaaa atcaaaatca gcgaaaataa
    10321 cgaaaaatca accctacctc attttaaaaa gctttttagg gtttatgata aaaacacgca
    10381 aaaaatcctt tttgatgaac tttatgtttt tgacgaaaac ccaaatcaag atgaaaattt
    10441 agaacgcaaa gaacttttaa aattagtcta caaagaaaaa agacttctta aaaagtcatc
    10501 tttaaatact attcaagatt atacaaaaga gcaaatttca aaactcgatg agaatttttt
    10561 agatcttgat cgttttgtga aatttgaagt aaaactctcg cctaaacttc aaaatatcac
    10621 tgaagatctt ttaaaaactc gtttttaaaa tccacataat ttaaagcgga ttgttttaga
    10681 aaatttattt cttcattatt taattcacgc acaaattttg caggatttcc aagtatcaaa
    10741 gagcgtggtg gaaatttttt accctttgtt acaacgcttc cagcacccac tatgctatct
    10801 tcttctatca aagcactatc catgataaca gcattcattc cgattaaaac acgatttttt
    10861 atcacacaag catggataac gcaattatgt cctatggtta catcatctcc tattatcgta
    10921 ggaaaaccag cgtcttttaa ctttcctttt tcatcaaatt ccctatgcca aacatgcacc
    10981 gtgctaagat cttgaatatt ggttcttttg ccaattttta taaaattaac atcggctctt
    11041 aaaacacaat taaaccaaat actactttca tctcctattt ctatttctcc tatgatttta
    11101 gcgccctctg caacaaaaac attttgacct agtttgggac tatgattttt aaattttata
    11161 agcatttttt tcctttttat ttaagtatag ctaagtttaa ctctatttca acttttttag
    11221 ttacaatttt tatttaaatt tataggagaa gtaatgaacg catttgaaca aaaaagatgt
    11281 caaaatatgg ctgaagaaat tgcacaaaaa gtttttatca atgaagaact ttttaatgct
    11341 ttttgtcaaa ttccgcgtga aattttttct cctttaaaag cccatgctta tcgccttgat
    11401 gctttgcctt tggcaaattc tcaatggatt agttcacctt taactgtagc taaaatgact
    11461 atggccttag attttaaaaa tgctgatagt attttagaga taggttgtgg aagtggctat
    11521 caagctgcga ttttaagcaa agtcataagg cgtgttttta ccatagaacg catagaaaat
    11581 ttagccaaaa aagccgctca aactttcaga gaattagaac tttttaatat caatgtaaaa
    11641 tttgatgatg ggcaaaatgg ctggaaaaat tatgctcctt atgataggat tttattttct
    11701 gcttatgcga cacaaattcc tgaaatttta ctcgatcaat taagcgatga cgggatttta
    11761 gtcgctccta ttttacacaa tggcaaacaa ttcatcacac gccttagaaa aaatggcaca
    11821 aatttacaaa aagaaatttt agaagaatgt ttatttgtgc ctatagtaga tggaaaagaa
    11881 taaacttttt ttacaaaatt tattaaaaac tctttagagc ctttcttaac ttttcgctca
    11941 tttcatcaat atgttctttt tgcaaaatta aaggaggtaa aaatctcaaa tcattctctc
    12001 cgcaacttat cagtaaaagt gcattttctt ggcatttttg aatgaccttg aatactttta
    12061 cacttttatt aagactcagc ccttgcataa accctaagcc tttgcgtttt ttacaaaaat
    12121 caaattcttt gatcaactca tctaaacttt gctctaaata aggcgtgagt ttattgacat
    12181 tttctaaaat tttttcttct ttaaaaattt caaaaaccgc attcactcct gcacaaacca
    12241 aaggatttcc cccataagtg ctaccatgat cgcctgcttc taaagaattg cttgctacct
    12301 tttgatttat tacaaaagca cccacactaa gcccacaacc caaggccttc gctgaagtca
    12361 tgatatcagg caaaatttgt gcgtgctcat aggcaaaaaa ttttccactt ctacccatac
    12421 cacattgaat ttcatcagcg attaataata tatctttttc atcgcaaagc tttcttaagg
    12481 ctttgtaaaa atctttattt gcaggattta tcccaccttc tccttgcaca ctttctaaga
    12541 taatggcaca agttttttca tttactagtt tttcaacgct tgaaatatca ttatattttg
    12601 caaatttaac ccctgaaatt aaaggcttaa aaggcttttg atatttttca ttagcagtaa
    12661 gcgataaagc ccctaaagta cgcccatgaa aagaatgctt aaaagcgata aattgtccac
    12721 ccttaatgcc tttgttaaag gcgtattttc tagctgtttt catcgctcct tctatacttt
    12781 ctgtaccaga atttgtaaaa aaaacacgct ctaaagcact agctttggct aaatttttag
    12841 ctgcagcggc tatgttttca ttataatata aattgctagt atgtaaaagt ttatccactt
    12901 gagctttgat tttagcatta aatttagcat gattatatcc taaagcacaa acacctatac
    12961 cacttgaaaa atcaagatat tttttagcct tatcatcaaa aagataaacc ccctgccctt
    13021 tttctaaaac tatatcaaaa cgcttataag tagggacaat atgactttgt tctttataat
    13081 ccattttcat cctttaaccc accaaagtgc ctataccttc atcagtaaaa aactcaagca
    13141 ataaagaatg cttcacgcgt ccatctaaaa tatgcacctt tttgactcca ttttcacaag
    13201 catcaataca ggattttaat tttacatgca taccaccttc tattttagga gctaaaattt
    13261 tagcttgctc aaggctgatt ttagaaatca aagaattttt atcactaaaa tcctcataaa
    13321 gtcctgcagt atcggttaaa aaagcaagtt tttcagccct taaagccttg gcgatcgcac
    13381 aagctacgtc atcagcgtta atattataag tattaaaatc ctcatccatg ccaataggag
    13441 caatgatagg taaaaaatct ttctctaaaa gctcttctaa aattttcgaa tttacctttt
    13501 gtatcgtgcc aacaaaagct aaattttcat cttttttcac acattctaaa agcgcgccat
    13561 ctttaccaca aagccctatg gctttaactc ctaaattttg caaactatgg actaaatttt
    13621 tattgatatg atttaaaacc atgctggcca cttcaatagt ggctttatca ctaaccctaa
    13681 gaccgttttt aaactcactc tttacgccta atttttcaca catagcagaa atatcttttc
    13741 ccccaccatg tacaataata ggctttaaac ccacgagttt taaaagagct atatcttgca
    13801 tcacacaatg ctttagctct tcattttcca tagctgatcc gccgtatttt ataagtataa
    13861 tcttagaatt aaatttgcgt atataaggca aagcttcgat taagacattg gctttttcta
    13921 aatatttttg catgatcatt tcttaagcat taaagctagt ttgattatac tcatttaaag
    13981 aaagatcgta ataattcgca tcctctctta aagtaaaacc ataatgtttc caaaactcat
    14041 tgcctaaatc attgttttta aaagcgatta aggcgatttt attaatcttt tgagctttta
    14101 aagcctcaag acaaaattta gtcatctcgt gtgctatacc cttttttcta tgatctttat
    14161 gtacacatac atgataaaat cctcctatgc gtccatcatg cccgcaaagt atgcttccta
    14221 caatttcttc atcaatcact actacaacgc taagatttgg gtttctatct aaaaaatttt
    14281 ctatattttc tttgctatca tcaatgcttc ttatcccaaa gccttttatc tcgcaccaaa
    14341 gcttataaac ggcttcataa tcgctttttt gcatagctcg tattaacatt tttatccttt
    14401 acaaatttgc aaagaattta agtccttcat cttcatcaaa atcaaacatt aaattcatat
    14461 tttgaacagc ttgtcctgct gcacctttga ttaaattatc aatagcacca agcacaataa
    14521 cacgctttgt gcgttgatct acactaaaat ttatatccgc aaaattgctt gatttaaccc
    14581 accgagtctg cggaaacgac tgcggcggta aaagccttat gaatttattg ttttgatagt
    14641 attttgtata aatatcgcgt atatcttgtt cttgcaagtc ctcttttaaa tttgcataag
    14701 cactgattaa aattcctctt tgcataggca caagatgagg ggtaaattgt agagtgattt
    14761 tctctttggc cgcatagctt aaatgctctt caatttcggg agtatggcgg tgcgaagcca
    14821 aaccataagc tttgatattt tcattaactt cgcaaaaaag attttccatc tttgcacttc
    14881 ttcctgctcc gcttactcca ctttttgcat caatgataac tgagttaaaa tcgatgattt
    14941 tttctttaaa aagcggataa agacttaaga tagaacaagt ggtatagcaa cctggatttg
    15001 ccaccaaact tgcttttttt atttcttctt tataaagctc acaaagtcca taaactgcat
    15061 tttgcaaaag ctcttgatta ggatgagtga atttatacca aagctcataa tctttaggat
    15121 ttttaagacg aaaatccgca cttaaatcaa tgattttcat cttttttaac aaattcttat
    15181 ttaaaagctt agcactaaat tcatgcggag tagccaaaaa caaaagatca agctcaagtt
    15241 catctaaatt tttattttca aaacataaat ttaaaggggt gttaggataa agatcttgat
    15301 aattttgccc cacgctagaa ctcgaaccca aataagaaat ttcaaccttg ggatgattaa
    15361 gcaaaatgcg aacaagttca tttcccgcat aaccactcgc tcctaaaatc ccaactttta
    15421 ttttcatctt tatcctttaa atgtaaaagc aagtattata aacaaaaaag cttaaaataa
    15481 aaatacaatt ttta
//
LOCUS       DBBXPZ010000040        15054 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.042, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000040 DBBXPZ010000000
VERSION     DBBXPZ010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15054)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15054)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15054
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.042"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(175..1371)
                     /gene="metK"
                     /locus_tag="ACJFD7_001011"
     CDS             complement(175..1371)
                     /gene="metK"
                     /locus_tag="ACJFD7_001011"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HGG0859831.1"
                     /translation="MYLFTSEVVSAGHPDKCADIIADTIVDILLKNDKNSRVASEVFV
                     AGNKVVIGGEVKSNHKLSKADYDNLVKDVLKNIGYDGAGHFSKEQCLHPDEVDVMVFL
                     NEQSPDINQGVDQEDGETGAGDQGIMFGFASCEAEEYMPAAISYARMLCDRVYAYAKA
                     NPHELGVDIKTQVTIDYGTKANFENCKPQSIHTIVVSAPCVESMKIEDLRSLVMKLIL
                     DSNLPKELFDPNKTRILINPTGKYVNHSSLHDSGLTGRKLIVDSFGGYSPIGGGAQSS
                     KDYTKVDRSGLYAGRWLAKNIVAAGLAKKCIVQLSYAIGVAKPTSVSVDCMGTNTSVN
                     DDVLSDFVMQNFSLTPNWIRDKFHLDKPSKETFLYADVAARGQVGQKDYPWEKLDALE
                     QFKKLL"
     gene            1511..2734
                     /gene="sstT"
                     /locus_tag="ACJFD7_001012"
     CDS             1511..2734
                     /gene="sstT"
                     /locus_tag="ACJFD7_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0015826 - threonine transport [Evidence
                     IEA];
                     GO_process: GO:0032329 - serine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HGG0859832.1"
                     /translation="MFSKIIQSYAKGNLIVQICIGIVLGILIGISSKEISEIANLLGI
                     LFTSALKAIAPMLVFILILTSICTKDFSQSGAKIKNIIILYIVGTFLASACAVLANFF
                     FPVKLVLDGVQTATNSSPTHMSDIFKDLLFKIVDNPINALSSGNYLGILTWAIAGGIA
                     LKHCSNEAKQVFIDINEGVLKIVKFVVKLAPFGIFGLVANSVAQTGAQGLLSYVKLLI
                     LLVATMLFVTFVINALIVFFYTRKNPFPLIFICLRHSAFFAFFTRSSAANIPVNMALC
                     AKLGIDKEFYGISIPLGATINMAGAAVTIAILSLTAANTVGIEISLLQAFLLSIIATF
                     AACGASGVAGGSLLLIPLACSLFNIDYDIAMKVVAIGFIIGVIQDSVETALNSSTDVL
                     FTAICSKNELNYNIK"
     gene            2744..3631
                     /locus_tag="ACJFD7_001013"
     CDS             2744..3631
                     /locus_tag="ACJFD7_001013"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HGG0859833.1"
                     /translation="MRHLITTKDFNKVEIMELFKEASDFLDEKPRTFLEGKSITTIFF
                     ENSTRTLSSFESAARRLGARVLRLDVSRSSSSKGETLYDTAANLDAMSPNAIVVRHAN
                     SGVPLILAKHMHCPVVNGGDGKHAHPTQALLDLFTIYNHFQGNVEGKKICIVGDIKNS
                     RVAASNIELLSRFNLDITLVAPPHFMPNTHLKKHYKLDENIIANSDIIMSLRTQTERH
                     NKTVYASLKDYANDFCIQKSLVKDKKLILLHPGPVNRNIDISDEMMSDERTLVLKQVK
                     NGVAIRMAVLKKLILENEG"
     gene            3635..5356
                     /locus_tag="ACJFD7_001014"
     CDS             3635..5356
                     /locus_tag="ACJFD7_001014"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HGG0859834.1"
                     /translation="MLEWDLSALFHDKEALQNFTQDQIQQSLNFKKNYENKLYTLNTN
                     EFLQALKDYENLNQALGKIMTYVYLLFAKNTQNGSFYAQYEEECKKIEENLLFFELEF
                     CELTPEKSQEFTTFCKDYDFYLSNLLQNKRYNLSKNEERIMLYLSNTGANAFSRLFDE
                     SMSALKIPFEGKKLSEEEVLSKMYDEDRKIRKKAAKKFSKVLQKNSRLLSFIINMIKT
                     ERKNISLLRGYENAEISRHISNQISQKSVDSLIASAQKHFNLVSQFYKRKKQILGYDE
                     LKDYDRYAPIGKEASFDFKTSKNIVLEAFQAFSPQFYDIAKNAFDQGWIDVYPQENKQ
                     GGAFSHSATSDAHPFVLLNYTNKRRDLFTLAHELGHTIHQKLSYNVSYLNQNTPLTTA
                     ETASVFAEMLVFDFIKDKLKKEELLSLYANKIEDIFATFYRQINFTCFERRLHAQENE
                     LSTEEINKIWMEESQKMFQDSVKLTKNYASWWSYIPHFIHSPFYCYAYAYAQLLVLAL
                     YGLYKSKKCENFKELYIKMLSLGGSVSPKELVGMFGFDIEDENFWEIGIKEIQKLINE
                     FMELQSC"
     gene            5350..5787
                     /locus_tag="ACJFD7_001015"
     CDS             5350..5787
                     /locus_tag="ACJFD7_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859835.1"
                     /translation="MLETILKNENFIHTMQKHCYEVISHLIEENIEFSIVANTNFIDF
                     NPELPKELDIKQNPYALFALGGYTFESIQLNKDFIQFHAGFGNDDFDSFVKVDLGAIT
                     QIQVENSILFVNFSLYKREDSKNLQKSKNIFLNNPKNKDIFKK"
     gene            5784..7859
                     /locus_tag="ACJFD7_001016"
     CDS             5784..7859
                     /locus_tag="ACJFD7_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HGG0859836.1"
                     /translation="MNLFEDLNDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLI
                     GEVGIPSHNTLTLTFTNKAASVMRHRALNFLQGNHNPLLCTFHKFGLLFLKLHFERLE
                     RKNSFIVIDTDDTKKIIKDLIHDKNKDNVYDIIKYISYCKNEGKRVSNVFEDLNLLKE
                     HNFEKYQNEYKFANYYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLLYNY
                     ITVDEYQDTNTLQYKILKNLCCMHENITVVGDDDQSIYSWRGAKIENILNFQNDFKNV
                     KLVKLEQNYRSVGTILQAANNLISHNEQRLGKTLICTKDTGENIKILKNENEKDEGLY
                     IAQEVKKLLNSGVEAKEIAVLFRVNALSRAIEEAFMKEKISYKLLSGMRFYERLEIKD
                     LISYLRLILNPNDDLSFRRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGV
                     GILTTKKAQNEANIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSEQDDGDERIRNL
                     DEFYANLREKLKEDPEASLEDLLSEISLLSDQDNLDEECVCLMSIHASKGLEFDYVFI
                     IGFDEGFFPLNSEENLEEERRLAYVAITRAKKFLTISVANSRFYHGSRANINPSRFLE
                     ESKLINEKSKNQNIQKTSFCKGDLVKHKIFGIGRVVEVNKSGKEEKLNINFGGIMRVI
                     MASFVEKAV"
     gene            7856..8674
                     /gene="truB"
                     /locus_tag="ACJFD7_001017"
     CDS             7856..8674
                     /gene="truB"
                     /locus_tag="ACJFD7_001017"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HGG0859837.1"
                     /translation="MNKIFAAFKPRGLSSNAFLSTLKKKYKNKKAGYSGTLDPFAKGV
                     LIVAFGQYTKLFRFLKKTPKTYKATLWLGVYSLSLDDQNIKEIQNIKEFDLANLKQII
                     DQMQGIISYTPPQFSAKRINGTRAYELAKKGIEANLKPCQMEVFDCKILSYNHPFLNI
                     EITVSEGAYIRSYCELFARKLGINATLSSLERIKEGKFVYNNEKSLNVLKYINLKPNF
                     IKDLNKLENGAKIFVEELEFHDEGDYYIETEKYFSIINIKENTVKYLLNKVEKC"
     gene            8668..8895
                     /gene="csrA"
                     /locus_tag="ACJFD7_001018"
     CDS             8668..8895
                     /gene="csrA"
                     /locus_tag="ACJFD7_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006109 - regulation of carbohydrate
                     metabolic process [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HGG0859838.1"
                     /translation="MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILR
                     KELVQQVKDENLHSVVQNDIKLDDLSKKLIK"
     gene            8892..9659
                     /locus_tag="ACJFD7_001019"
     CDS             8892..9659
                     /locus_tag="ACJFD7_001019"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0050515 - 4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HGG0859839.1"
                     /translation="MKAYAKANIFLKLTGFDSRKYHLLESRFILLKDVFDELELVDKE
                     SDSKKEFEIISNFKCENNIIQKAYLLLSRRYNNELKELFSKKSLKLTKNIPVCAGLGG
                     GSSDCASFLLLINETLNLKLNLQELINLSIQLGSDIAFFLSGFHSANVSSCGEIIEEF
                     EDDIPNLKWTFPQISCQTKAVYDEFDREIFDFQKNNNQAQIYKKLSTKELLQNFKNKE
                     LNDLFTPCATLYPKMKSYLQEDFFLSGSGSSVFKVDR"
     gene            9656..10108
                     /gene="smpB"
                     /locus_tag="ACJFD7_001020"
     CDS             9656..10108
                     /gene="smpB"
                     /locus_tag="ACJFD7_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HGG0859840.1"
                     /translation="MKIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDS
                     FVRIIKNEIFLLNSHISLLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIV
                     ALDLYFNTKNKVKATLALAKGKNLHDKRETLKKKQADLEAKAAMKNYK"
     gene            10119..10721
                     /locus_tag="ACJFD7_001021"
     CDS             10119..10721
                     /locus_tag="ACJFD7_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HGG0859841.1"
                     /translation="MKKISALFLISLAFFLNACSKEEEIQNDFMFEEYHKGDKIVLNS
                     VNGGSKTLIRTDKGFVVEGEEGKVLMFDFFGTFCTPCKEEALDLSKLWKNNSSKFIII
                     GLTHFEDVSDETVKKFADDYGAYYFLSNDSSNDRIIAQILKDIDYQNMEQLPFKVVLK
                     NGIYQKISDYWNNNTPTNFYLGKIPTELMQEDLNKIYKGK"
     gene            10721..11011
                     /locus_tag="ACJFD7_001022"
     CDS             10721..11011
                     /locus_tag="ACJFD7_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adaptor ClpS"
                     /protein_id="HGG0859842.1"
                     /translation="MPKTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQN
                     LEKASQTMLEIHHNGSGICGIYTQEIALSKQKKVMYAAKLANFPLQAKVEEE"
     gene            11008..13137
                     /locus_tag="ACJFD7_001023"
     CDS             11008..13137
                     /locus_tag="ACJFD7_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HGG0859843.1"
                     /translation="MKYQENLQKYLDNAKNLSLINHHEFVTCEHVLFALLKLSTDFKD
                     IFEEFSDGDLELLETELKNYISQNNQVIKQEIEPTISVVLDEILLSSKNKNNEIKIID
                     FLEKLIQDSRSYSSYLLKKHNINLNKIQELQNHENIQNLNNHTSDLTLLAQNGKIDPL
                     IGRKFELERMMQILSRRKKNNPILVGEAGVGKTAIVEGLALAIAEKKVPKNLQNAKIF
                     SLDMASILAGTKYRGDFEKRIKEILNELEKIPNAILFIDEIHTIVGAGSTGESHTDFS
                     NLLKPALSNGTLKCIGATTFMEYKNTFDKNKPLSRRFAKINVDEPSQEESLQILKGLK
                     NKYEEFHHIKLNDEILQYAVIWGKKFFNDKFLPDCAIDLIDELGASFALNPKAKKNAN
                     LKDLENVLAKMTHHHKIFEFDQNKALMNLKTNLKAKIFGQDEVIDSLVSSLKQSFAGF
                     KNSNTPRGVFLFTGSSGVGKTELCKALAEFLGLNLERFDMSEYAEKHTISKLIGSPAG
                     YIGFEEGGLLSNAIRKNPFSLVLFDEIEKAHPDLSNTFLQIFDNAELTDNSGLKVDFK
                     NTIIIMTSNLGLKESNELGFLSKNEEKSNRAIKDFFAPEFINRIDKILHFNDLNDAIL
                     VKIIEKELDEISKNLNNIKLSMDDKAKIYLAKKAYNKEFGVRLLKRIISEEIGEKISD
                     EILFGKLKKGGIAKIKLGKNGKLEFIF"
     gene            13112..13759
                     /gene="aat"
                     /locus_tag="ACJFD7_001024"
     CDS             13112..13759
                     /gene="aat"
                     /locus_tag="ACJFD7_001024"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008914 - leucyl-tRNA--protein transferase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HGG0859844.1"
                     /translation="MESSNLYSKLLNAPKNAPVFLSQNLEADFIVKAYTFGLFPWTSK
                     PVTWWCPDPRCILIPNQIHIQKNMKKFINLYQIKLDYDFLKLITLCRDTRSQSWIDDE
                     FITTYYKLFTQGYAHSLELYENNELIGGIYGLILGKVFFGESMVSIKKNASKVAMIKL
                     CDLLKPYDFIIDCQVYNQHLEFMGAHNISRKEFLNILKEKCNQESGFKNFKDLIT"
     gene            complement(13781..>15054)
                     /gene="cetZ"
                     /locus_tag="ACJFD7_001025"
     CDS             complement(13781..>15054)
                     /gene="cetZ"
                     /locus_tag="ACJFD7_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="energy taxis response protein CetZ"
                     /protein_id="HGG0859845.1"
                     /translation="NNTKIIEQLEKNVMVLGDILRSIGNTMAVIEFTTDGVILEANQN
                     FLTTMKYSLSEIKGKHHSMFCLPEVVNSSAYSDFWKDLRDGKARSGLFRRIAKGGIDV
                     YLEANYLPISDNNGYVYKIIKFANDITQRHYEMLDLKNTIAAANRSMAIIEFKPDGTI
                     ITANENFLRTMDFNIDEIKGKHHSMFCDSNYRHSKDYVQFWEDLREGKFQSGKYIRYG
                     RNNKKVYLEASYNPVKNDDGKIYKVIKFATDISEQVKKDQEKLRLISELAEKNDNLTQ
                     DGDRVIENTVSNVQNIADMMSQSSNLVSSLNQQSDEIKSIIQTISDIADQTNLLALNA
                     AIEAARAGEHGRGFAVVADEVRNLAERTGHSVNEITTTINSIRNVTSQVVESIKSGLE
                     DVNQSVELAKEARECMEKIRESSAEVAKAMS"
BASE COUNT         5612 a         2239 c         2264 g         4939 t
ORIGIN      
        1 ttttgactta gaggggtttt taccccaaag ctaaattaat ttagcttcct tcctaacttt
       61 tatatttatg ggggatattg aaaaatatcc ctctaagtca aaaattaata taactttatt
      121 aattctttat aattatacaa gccttattta agcttgtata atattgttaa ttttttaaag
      181 tagcttttta aactgttcta gagcatcaag tttttcccaa ggatagtcct tttgtcctac
      241 ttgcccacga gctgctacat ccgcataaag aaaagtttct ttacttggtt tatccagatg
      301 aaatttatca cgaatccaat ttggtgttaa agagaaattt tgcataacaa aatcacttaa
      361 aacatcgtca tttacactag tatttgtgcc catacaatct acgcttaccg aagtaggttt
      421 tgcaacacct atagcatagc taagttgaac aatacatttt ttagcaagcc ctgctgcaac
      481 tatgttttta gctagccatc tacctgcata aagtccactt ctatcaacct tagtataatc
      541 tttgctcgat tgtgcgccac cacctattgg agaataacct ccaaaactat ctactataag
      601 ctttcttcct gttaaaccac tatcatgcaa agaagaatga ttaacatatt taccggttgg
      661 attaattaaa attctagttt tattaggatc aaaaagttct tttggtaaat tactatctaa
      721 gataagtttc atcaccaaag atcttaaatc ttctattttc atactttcaa cacaaggtgc
      781 agaaactact atagtatgga tactttgcgg tttgcaattt tcaaaatttg ccttagtacc
      841 ataatcaata gttacttgag ttttaatatc tactccaagt tcatgtggat ttgcttttgc
      901 ataagcataa actctatcgc atagcattct tgcataacta atagctgctg gcatgtattc
      961 ttcagcttcg caacttgcaa aaccaaacat aataccttga tcacctgctc ctgtttcgcc
     1021 atcttcttga tcgacacctt gattgatatc agggctttgt tcatttaaaa acaccataac
     1081 atcaacttca tcaggatgca aacactgctc tttactaaaa tgccctgctc cgtcataacc
     1141 aatgtttttt aaaacatctt taactaaatt atcgtaatca gctttactaa gcttgtgatt
     1201 tgacttaact tcgcctccta tcacaacctt atttcctgcg acaaaaacct cactcgccac
     1261 ccttgaattt ttgtcatttt tcaagagtat atccactatc gtatcagcga ttatatcagc
     1321 gcacttgtct ggatgacctg cacttacgac ttctgaagtg aatagataca taaaaagtcc
     1381 tttcatttaa aatgaaccac aattgtatcc aaataaactt atcaaagctt gataaattaa
     1441 aaatttacta aaattaagca aaagttagtt aaaatcaact tctgatataa aaaatattta
     1501 aaaggttttt atgttttcta aaatcattca aagctacgct aaaggcaacc tcatagttca
     1561 aatttgtata ggtatagtac taggaatact cataggcatt agttctaaag aaatatctga
     1621 aattgcaaat ttactcggaa tactttttac aagtgcctta aaagctatcg ctcctatgct
     1681 tgtttttatt ttaattttaa cctcaatttg cactaaagat ttttctcaaa gtggtgctaa
     1741 gatcaaaaat attattattt tgtatatagt aggcaccttt cttgcttcag cttgtgcggt
     1801 tcttgctaat tttttcttcc ctgtaaagct tgttttagat ggagttcaaa ctgctacaaa
     1861 ctcatctcca acccacatga gtgatatttt caaagatctt ttatttaaaa ttgttgataa
     1921 tcccataaat gctctttcaa gtggaaatta tttaggaatt ttaacttggg caatagctgg
     1981 aggtatagca ttaaaacact gttctaacga agcaaaacaa gtttttatag acattaatga
     2041 aggggtttta aaaattgtta aatttgtagt aaaacttgct ccttttggaa tttttggact
     2101 tgtggctaat tctgtagcac aaacaggagc acaaggtttg ctaagttatg taaaactttt
     2161 aattttactt gtagctacta tgctttttgt tacttttgtt atcaatgcct taatagtctt
     2221 tttttataca agaaaaaatc cttttccttt aatttttatc tgcttaaggc acagtgcatt
     2281 ttttgccttt tttacaagaa gttcagcggc aaatattcct gtaaatatgg cactttgcgc
     2341 taaacttggc atagataaag aattttatgg catttctata cctttaggag ctactatcaa
     2401 catggcagga gcagcagtta ctatagctat tttaagtctt actgcagcca ataccgttgg
     2461 tatagaaatc agtcttttac aagccttttt attaagcatt attgccacct ttgcagcttg
     2521 tggggctagc ggagttgcgg gcggatcttt actgcttata cctttggctt gttctttatt
     2581 taatatagac tatgatattg ctatgaaggt agttgccata ggttttatta taggggttat
     2641 tcaagatagt gttgaaactg ctttaaatag ttctacagat gttcttttta cagcaatttg
     2701 ttctaaaaat gaattaaatt acaatatcaa ataaggtaaa aacatgcgtc atctcatcac
     2761 tacaaaggat tttaataaag tcgaaattat ggagcttttt aaagaagcaa gtgatttctt
     2821 agatgaaaaa cctaggactt ttcttgaagg aaaaagcatc acgacaattt tttttgaaaa
     2881 ctctacacgc accctttcat cttttgaaag cgctgcaaga agattaggtg ctagggtttt
     2941 acgccttgat gtttcaagat caagctctag caaaggagaa actctttatg atactgctgc
     3001 taatttagat gccatgagtc ctaatgctat tgttgtaaga cacgcaaact caggagttcc
     3061 tttgatatta gcaaagcata tgcattgtcc agttgttaat ggaggagatg gaaaacacgc
     3121 ccatcctacc caagctttac tcgatttgtt tacgatttat aatcattttc aaggtaatgt
     3181 tgaaggtaag aaaatttgca tcgtaggtga tattaaaaac tctcgtgtag cagcgtccaa
     3241 tatagagctt ttaagtagat ttaatcttga tattacccta gtagctccac cacattttat
     3301 gcctaatacc catcttaaaa aacattataa gcttgatgag aatatcatag caaattcaga
     3361 tattatcatg agtcttagaa cacaaacaga aagacataat aaaaccgttt atgcttcact
     3421 taaagactat gcaaatgatt tttgcattca aaaaagctta gtaaaggata aaaagcttat
     3481 tttactacat ccaggccctg ttaatcgcaa tattgacata agcgatgaaa tgatgagcga
     3541 tgaaaggact ttagttttaa aacaagttaa aaatggagtg gctattagaa tggctgttct
     3601 taaaaaactc atactagaaa atgaaggata aaaaatgtta gaatgggatt taagtgcttt
     3661 atttcacgat aaagaagcat tgcaaaattt tacacaagat caaatccaac aaagtttaaa
     3721 tttcaaaaaa aactatgaaa ataaacttta tacattaaat actaatgagt ttttgcaagc
     3781 tttaaaagat tatgaaaatt taaatcaagc tcttggtaaa atcatgactt atgtttattt
     3841 gctttttgct aaaaacactc aaaatggttc tttttacgca caatacgaag aagagtgcaa
     3901 aaaaatagaa gaaaatttac tctttttcga gcttgaattt tgtgagttaa ctcctgaaaa
     3961 aagtcaagaa tttacaactt tttgcaaaga ttatgatttt tatctttcta atttattgca
     4021 aaacaaacgc tataatctta gcaaaaacga agaacgcatt atgctttatc tttcaaatac
     4081 aggcgcaaat gcttttagta gactttttga tgaaagtatg agcgctttaa aaatcccttt
     4141 tgaaggtaaa aaacttagcg aagaagaagt tctaagcaaa atgtatgatg aagatagaaa
     4201 aatacgcaaa aaagctgcta aaaaattcag taaagttttg caaaaaaata gcagactttt
     4261 aagttttatt attaatatga taaaaacaga aagaaaaaac ataagcttat taagaggtta
     4321 tgaaaatgct gaaatttcaa gacatatcag caatcaaatt tcacaaaaaa gcgttgattc
     4381 tttgatagca agtgcgcaaa aacattttaa cttagtatcg caattttaca aaagaaaaaa
     4441 acaaatttta ggctatgatg agcttaaaga ctatgacaga tatgcaccca taggaaaaga
     4501 agcaagtttt gattttaaaa caagtaaaaa tattgtttta gaggcatttc aagctttttc
     4561 tcctcaattt tatgatatag caaaaaatgc ttttgatcaa ggttggattg atgtttatcc
     4621 gcaagaaaat aaacaagggg gtgctttttc gcattctgca acttctgatg cacatccttt
     4681 tgttttatta aactacacca ataaaagacg cgatcttttt acacttgcac atgaattagg
     4741 acacactatc catcaaaaac tttcttataa tgtaagctat ttaaatcaaa atacaccttt
     4801 aaccaccgca gaaacagctt cagtttttgc tgaaatgctc gtatttgatt ttattaaaga
     4861 taagttaaaa aaagaagaac tcttatcttt atatgcaaat aaaatcgaag atatttttgc
     4921 aactttttat agacaaatta attttacttg ttttgaaaga cgcttacatg ctcaagaaaa
     4981 tgaacttagt accgaagaaa tcaataaaat ttggatggaa gaatctcaaa agatgtttca
     5041 agacagcgta aaacttacaa aaaattatgc ttcttggtgg agttatattc ctcattttat
     5101 ccattctcct ttttactgct atgcttatgc ttatgcacaa cttttagttt tagctcttta
     5161 tggactttat aaaagtaaaa aatgtgaaaa ttttaaagaa ctttatatca aaatgctttc
     5221 tttaggtgga agcgtgagtc caaaagaact agtaggaatg tttggatttg atatagaaga
     5281 tgaaaatttt tgggaaatag gcataaaaga aattcaaaaa ctcatcaatg aattcatgga
     5341 gttacaatca tgctagaaac aatcttaaaa aatgaaaatt ttatccatac catgcaaaag
     5401 cattgttatg aagttatttc acaccttata gaagaaaata tagaattttc catagttgca
     5461 aatacaaatt tcatagattt taaccctgaa cttcccaaag agcttgatat taaacaaaat
     5521 ccttatgctc tttttgctct tggaggatac acctttgaat ccatacaact aaataaagat
     5581 ttcattcaat ttcacgcagg ttttggaaat gatgattttg atagttttgt aaaggttgat
     5641 ttaggagcta tcacgcaaat tcaagtagaa aatagcattt tattcgttaa ttttagtctt
     5701 tataaacgtg aagatagcaa aaatttacaa aaatctaaaa atatattttt aaataatcca
     5761 aaaaataaag atattttcaa aaaatgaatc tatttgaaga tttaaatgat agtcaaaaac
     5821 aagcggtaag ccacattgat ggagctatgc ttatcctagc aggcgcaggt agtggaaaaa
     5881 ccaaaactat caccactcgt cttgcttatc ttatcggtga agtaggcatc ccctcgcata
     5941 acactcttac tcttactttt acaaataaag cagctagtgt tatgcgtcat agagcgttaa
     6001 attttctaca aggcaatcac aatcctttgc tttgcacctt tcataaattt ggacttttat
     6061 ttttaaaact ccattttgaa agattggagc gtaaaaatag ttttattgtt atcgatacag
     6121 atgatacaaa aaaaataatt aaagacttaa tccatgataa aaacaaagat aatgtctatg
     6181 atattatcaa atacatatct tattgcaaaa atgaaggcaa aagagtaagc aatgtctttg
     6241 aagatttaaa tttactaaaa gaacataatt ttgaaaaata tcaaaatgaa tacaaatttg
     6301 ccaactatta ccgtgcttat gaagaatact tattaaagca aaattttgta gattttgatg
     6361 atcttttatt gctaagcaat ctcattttag aaaatgatat aaattttgcc aaagaacaaa
     6421 gcttacttta taattacatt acagttgatg agtatcaaga tactaatacc ttgcaatata
     6481 aaattctaaa aaatctatgt tgtatgcatg aaaatatcac agttgttggt gatgatgatc
     6541 aaagtatcta tagttggcgt ggagcaaaaa ttgaaaatat tttaaatttt caaaacgatt
     6601 ttaaaaatgt taaacttgta aaacttgaac aaaactatcg ttcagtaggg actattttac
     6661 aagcagcaaa taatctcata tctcacaatg agcaacgact tggaaaaact ttaatctgca
     6721 ctaaagatac tggggaaaat attaaaatat taaaaaacga aaacgaaaaa gatgaaggtt
     6781 tatatatcgc tcaagaagtg aaaaaattgc taaattctgg agtagaagct aaagagatcg
     6841 ccgttttatt tcgagttaat gcactatcaa gagcaataga agaagcattt atgaaggaaa
     6901 aaatttctta taaactgctt agcggtatgc gtttttatga gagattagaa ataaaagatt
     6961 taatctcgta tcttagactt atcttaaatc caaatgatga tttgtcgttt aggcgtatta
     7021 ttaatcgccc caaaagatcc ataggggaaa aagccttaaa aaatttagaa gaatatgcaa
     7081 aaaaacgtca aatttcactt tttgatgcct tatgtgaaag cgatggtggt gtaggaattt
     7141 taacaacaaa aaaagcacaa aatgaagcaa atatttttat acaaaatatt cacactctaa
     7201 aaagctacga taatgcaaaa aaagtttttg acaatataga agaattattt aaaatcaaag
     7261 attatttttc agagcaagat gatggagatg aaagaatcag aaatcttgat gagttttatg
     7321 ccaatctaag agaaaaactc aaagaagatc ccgaagcttc tttagaagat ctacttagtg
     7381 aaatttcttt attaagcgat caagataatt tagatgaaga atgtgtttgc ttgatgagta
     7441 ttcatgctag caaaggtttg gaatttgatt atgtttttat aataggcttt gatgaaggat
     7501 tttttccttt aaatagcgaa gaaaatctcg aagaagaacg ccgtcttgct tatgttgcca
     7561 tcactcgcgc caagaaattt ctcacaataa gtgttgcaaa ttctcgtttt tatcatggtt
     7621 caagagcaaa catcaatcct agccgcttct tagaagaaag taaattaatc aatgaaaaat
     7681 caaaaaatca aaatatacaa aaaactagtt tttgcaaagg agatctagtt aaacataaaa
     7741 tttttggcat tggcagggtt gttgaagtta ataaaagcgg aaaagaggaa aagcttaata
     7801 ttaattttgg tggcataatg cgtgtaatca tggcaagctt tgtggaaaaa gcagtatgaa
     7861 caagatcttt gcagccttta aaccaagggg tttgagttct aatgcctttt taagtacttt
     7921 aaagaaaaaa tataaaaata aaaaagcagg atattctggc actcttgatc ctttcgccaa
     7981 aggggtttta atcgttgcat ttggacaata cacaaaactt ttccgttttt taaaaaaaac
     8041 cccaaaaacc tataaagcta ctttatggct tggagtttac tccttaagtc ttgatgatca
     8101 aaatataaaa gaaattcaaa atataaaaga atttgatctt gcaaatttaa aacaaatcat
     8161 tgatcaaatg caaggaatta tctcctatac accacctcaa tttagcgcca aaagaatcaa
     8221 tggaactcgc gcctatgaac ttgcaaaaaa aggtatagaa gcaaatttaa aaccttgtca
     8281 aatggaagta tttgattgta agatcttaag ctataatcat ccttttttaa atattgaaat
     8341 cacagtcagt gaaggtgctt acataagatc ttattgtgaa ctttttgcta gaaaactagg
     8401 tattaatgcg actttaagct ctttagagcg cattaaagaa ggcaaatttg tttataataa
     8461 tgagaaaagc ttaaatgtgt taaaatacat taacctaaag ccaaatttta tcaaggattt
     8521 aaataaactc gaaaatggtg ctaaaatttt tgtcgaagaa ttagaatttc atgatgaagg
     8581 agattattat attgaaacag aaaaatattt tagcataatt aatattaaag aaaatacagt
     8641 aaaatatctt ctaaataagg ttgaaaaatg ttaatattat caagaaaaga aaatgaaagt
     8701 ataattatcg gagaaggtat agaaatcaaa gtcgttcaaa cagggaaagg atatgccaaa
     8761 ataggtatag aagctccaaa atcccttatg atacttagaa aagaacttgt tcaacaagta
     8821 aaggatgaaa atttgcattc tgttgttcag aatgatatta aacttgatga cttaagcaaa
     8881 aaactaatca aatgaaagct tacgctaaag caaatatttt tttaaaactt accggttttg
     8941 actcaagaaa atatcatctt ttagaatcac gatttatact tttaaaagat gtttttgatg
     9001 agcttgagct tgttgacaaa gaatcagatt ctaaaaaaga atttgaaatc attagtaatt
     9061 ttaaatgcga aaataatatt attcaaaagg cttatttgct actttctaga agatataata
     9121 acgaattaaa agaattattt agcaaaaaaa gtctaaaact cacaaaaaat atcccagtat
     9181 gtgctgggct tggtggtgga agtagcgatt gtgcgagttt tttactacta ataaatgaaa
     9241 ccctaaattt aaaattaaac ctacaagaac ttataaattt aagcatacag ctaggaagtg
     9301 atattgcctt ttttttaagt ggctttcact ctgctaatgt aagtagctgt ggcgaaatta
     9361 tagaagaatt tgaagatgac atacctaatt taaaatggac ttttccacaa atatcttgcc
     9421 aaactaaagc tgtttatgat gaatttgata gagaaatatt tgactttcaa aaaaacaata
     9481 atcaagcgca aatatacaaa aaactcagca caaaagagtt gttacaaaat tttaaaaaca
     9541 aagaattaaa tgatttattt actccttgtg caactttata tcctaaaatg aagtcttact
     9601 tacaagaaga tttttttcta agcggtagcg gtagtagtgt ttttaaggtt gatcgatgaa
     9661 aattattgcg agaaataaaa aagctttatt tgattatagc atcatagaac gctttgaagc
     9721 cggaattgtc cttaaaggaa gtgaagttgt agccttaagg gcaggaagag caaatcttaa
     9781 agactctttt gttcgcatta taaaaaatga gattttttta cttaattctc atatttcatt
     9841 acttcatact acacactctt tctataaaca cgaagaaaga ggcgctagaa agcttttaat
     9901 gcatagaaag caaattgata aattattagg taaagtaagt atagaaggat atactatcgt
     9961 tgcattagat ctttatttta acacaaaaaa taaagtaaaa gctacccttg ctttagctaa
    10021 agggaaaaat ttgcacgaca agcgtgaaac tttaaagaaa aagcaagccg atttagaagc
    10081 taaagctgct atgaaaaatt acaaataaag gaaaataaat gaaaaaaatt tcagccctat
    10141 ttttaataag tttagcattt tttcttaatg cttgctccaa ggaagaagaa attcaaaatg
    10201 attttatgtt tgaagagtat cacaaaggag ataaaatagt cttaaatagt gtaaatggtg
    10261 gaagcaaaac tttaataaga acagataaag gttttgtggt ggaaggagag gaaggaaaag
    10321 ttctaatgtt tgattttttt ggcacttttt gcaccccatg taaagaagaa gctttagatc
    10381 ttagcaaact ttggaaaaat aattctagca aatttatcat tataggactt acacattttg
    10441 aagatgttag cgatgaaaca gttaaaaaat tcgcggatga ttatggtgct tactattttc
    10501 taagcaatga cagctctaat gatcgtatta ttgctcaaat tttaaaagat atagactatc
    10561 aaaatatgga gcaacttcct tttaaagttg ttttaaaaaa tggaatttat caaaaaataa
    10621 gcgattactg gaataataat actccaacaa atttttatct tggtaaaatt ccaacagaac
    10681 tcatgcaaga agatttaaat aaaatctaca aaggaaaata atgccaaaaa cccaaactct
    10741 agagcaaaca aaacttagtg aaccaaaaat gtataaagtt atactcttaa atgatgatgt
    10801 aacaaccatg gattttgtta tagaaatttt gatgaatatt tttcatcaaa accttgagaa
    10861 agcaagtcaa acaatgttag aaattcatca caatggttct ggaatttgtg gcatttacac
    10921 ccaggaaata gctctttcaa aacaaaaaaa agttatgtat gcggctaaac ttgctaattt
    10981 tccactacaa gcaaaggtgg aagaagaatg aaataccaag aaaatttaca aaaatatctt
    11041 gataatgcca aaaatctaag cttaataaat caccatgaat ttgttacctg tgagcatgta
    11101 ctgtttgcat tactaaaact aagcactgat tttaaggata tatttgaaga attttcagat
    11161 ggagatcttg aacttctaga aactgaatta aaaaattaca tttctcaaaa caatcaagtt
    11221 attaaacaag aaatagaacc tacaatatct gttgttttag atgaaatctt actttcatct
    11281 aaaaataaaa ataatgaaat taaaattata gattttttag aaaagctcat acaggattca
    11341 agaagttatt ctagctatct cttaaaaaaa cacaacataa atcttaacaa aattcaagaa
    11401 cttcaaaatc atgaaaatat acaaaattta aacaaccaca caagtgattt aacacttttg
    11461 gctcaaaatg gcaagattga tcctttaata ggaagaaaat ttgaacttga aagaatgatg
    11521 caaattcttt cacgtcgcaa gaaaaataat cctattttag taggagaagc aggagttggc
    11581 aaaacggcca ttgtagaagg attagcatta gctattgcgg aaaaaaaggt gcctaaaaac
    11641 ttacaaaatg caaaaatttt tagtcttgat atggctagta tacttgcggg aacaaaatac
    11701 cgtggagatt ttgagaaaag aattaaagaa attttaaatg aacttgagaa aatacccaat
    11761 gctattttat ttattgatga aattcacact atagtaggag ctggaagcac aggagaatct
    11821 catactgatt tttccaatct tttaaaacca gctctaagta atggaacttt aaaatgcata
    11881 ggtgcaacaa cttttatgga atataaaaat acttttgata aaaataaacc cctaagtcgc
    11941 cgttttgcta aaataaatgt agatgaacca agccaagaag aaagcttgca aattcttaaa
    12001 ggattaaaaa acaaatatga agaatttcat catataaaat taaacgatga aattcttcaa
    12061 tatgctgtaa tttggggtaa aaaatttttt aatgataaat ttttacctga ttgtgctata
    12121 gatctgatcg atgaacttgg cgcttctttt gctttaaatc caaaagctaa aaaaaatgcc
    12181 aatttaaaag atttagaaaa tgttttagca aaaatgaccc accatcacaa aatatttgaa
    12241 ttcgatcaaa ataaagcttt aatgaattta aaaacaaatt taaaagcaaa aatttttggc
    12301 caagatgaag ttatagatag ccttgtttca tcacttaagc aaagttttgc gggatttaaa
    12361 aattccaata caccacgcgg agtgtttttg tttactggat caagtggagt tggaaaaaca
    12421 gaactttgca aagctttagc tgaattttta ggtttaaatt tagaacgctt tgatatgagt
    12481 gaatatgcag aaaaacatac tataagtaaa ctaataggat ctccagctgg atatataggt
    12541 tttgaagagg gtggactttt aagcaatgct attcgcaaaa atcctttcag tcttgttctt
    12601 tttgatgaaa tagaaaaggc tcatcctgat ttaagcaata cctttttaca gatttttgac
    12661 aatgctgaac tcaccgacaa tagcggtctt aaagtagatt ttaaaaatac aatcattatt
    12721 atgacatcta atctaggact taaagaaagc aatgagcttg gttttttaag taaaaatgaa
    12781 gaaaaaagta atcgtgctat caaagatttt tttgctccag aatttattaa tcgcattgat
    12841 aaaattttac attttaatga tttaaacgat gctatacttg ttaaaattat cgaaaaagaa
    12901 cttgatgaaa tttctaaaaa tttaaataat ataaaattat caatggatga taaagccaaa
    12961 atttatttag ctaaaaaagc ctataataaa gaatttggag taaggctttt aaaacgcata
    13021 atttctgagg aaataggaga aaaaatcagt gatgaaattt tattcggaaa gcttaaaaaa
    13081 ggcggtatag ctaaaatcaa acttggtaaa aatggaaagc tcgaatttat attctaaatt
    13141 actcaatgca cctaaaaatg ctcctgtatt tttaagtcaa aatttagaag ctgattttat
    13201 tgtaaaagct tatacttttg gtctattccc atggacaagt aaacctgtaa cttggtggtg
    13261 tccagatcct agatgcattt taattccaaa tcaaattcac atccaaaaaa atatgaaaaa
    13321 atttattaat ctctatcaaa ttaaacttga ttatgatttt ttaaaattaa ttacattatg
    13381 tcgcgataca cgctctcaaa gctggataga tgatgaattt attaccactt attataagtt
    13441 atttacccaa ggctatgcgc atagccttga actttatgaa aataatgaac ttataggtgg
    13501 aatttatggt ttaattttag gcaaggtttt ctttggtgaa agcatggtaa gcattaaaaa
    13561 aaatgcatct aaagttgcca tgattaaact ttgtgattta ttaaaacctt atgattttat
    13621 catagattgt caagtttata accaacattt agaatttatg ggtgctcata atatttctag
    13681 gaaagaattt ttaaatattt taaaagaaaa atgcaatcaa gaaagtggtt ttaaaaattt
    13741 taaagattta attacttaaa aataagcgtg aaaatcacgc ttatgacatc gctttagcaa
    13801 cttcagcaga gctttcacga attttctcca tacactctct tgcttctttt gcaagttcaa
    13861 cactctgatt aacatcctct aaaccgcttt taatactctc aaccacttgt gatgtaacat
    13921 tacgaataga attaatcgta gtggtaattt cattaaccga atgccctgtt ctttcagcta
    13981 aatttcttac ttcatcagca acaacagcaa aacctctacc atgttcacca gcacgtgctg
    14041 cctcaatagc agcatttaaa gcaagcagat tagtctgatc agcaatatca ctaatagttt
    14101 gaataataga tttaatttca tctgattgtt gatttaaaga ggaaacaaga tttgaacttt
    14161 gagacatcat atcagcaata ttctgaacat ttgaaacagt gttttcaatt acacgatctc
    14221 catcttgagt aagattatca tttttttctg caagttcgct tatgagacga agtttttctt
    14281 gatctttttt aacttgttcg cttatatctg tagcaaattt aataaccttg taaatttttc
    14341 catcatcatt tttaaccgga ttataacttg cttcaaggta tactttttta ttatttcttc
    14401 cgtatcttat atatttacct gattgaaatt taccctctct taaatcttcc caaaattgaa
    14461 catagtcctt agagtgtcta taattagaat cacagaacat actatgatgc tttcctttaa
    14521 tctcatcaat attaaaatcc atagttctta aaaaattttc attagccgta ataatagtcc
    14581 catcaggttt aaattcaata atagccatag aacgattagc agcagcaata gtatttttaa
    14641 gatcaagcat ttcataatgt ctttgagtta tatcattggc aaatttaata attttataaa
    14701 cataaccatt attatcacta attggaagat aatttgcttc taaataaaca tctatccctc
    14761 ccttagctat acgtctaaaa agaccacttc tagcttttcc atctcttaaa tctttccaaa
    14821 aatcactata tgctgaagaa ttaacaactt caggcaaaca aaacatacta tgatgcttac
    14881 ccttgatctc tgaaagggag tatttcatag ttgttaaaaa attttgattt gcctctaaaa
    14941 taacgccatc ggtagtaaat tcaattaccg ccatggtatt cccaatagat cttaaaatat
    15001 ctcctaaaac cattacattt ttttcaagtt gttcaattat tttagtatta tttt
//
LOCUS       DBBXPZ010000041        14279 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.043, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000041 DBBXPZ010000000
VERSION     DBBXPZ010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14279)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14279)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14279
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.043"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            31..1050
                     /locus_tag="ACJFD7_001026"
     CDS             31..1050
                     /locus_tag="ACJFD7_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859846.1"
                     /translation="MNLKIFSIIVGILIAVIVILGGTYYYLFEYSKPKNYTLNTNTYT
                     EQKSYTNNYDNSYSPSIQTNNSSSNVNTNNNTIQKQETNPLDENQSLNNDTFNTSISE
                     NNQSLNNDTNTSNNINTNENKQILDTDKEKLKQENKQAKIEALKKEISKQQKILERER
                     AVKKELQSNKSNKNKYLNTAREYLSIGKNSRLEPELSTENMKVYILDGKFLSQYRINL
                     LKDMLSVIQDNAKDYYLSIFVKMLPKGEMKLTIYNKEIIFSDMKKAYKYISLDRLSPY
                     LNNPKELNEHVAREEILERLKLQIKKDGKGSDFSKHIKSLKTGLNTAQYFFPFCEIIE
                     ISSIK"
     gene            1073..3685
                     /gene="valS"
                     /locus_tag="ACJFD7_001027"
     CDS             1073..3685
                     /gene="valS"
                     /locus_tag="ACJFD7_001027"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HGG0859847.1"
                     /translation="MYDKNLEKEYYQICEERGYFEINGNKTIQEKDKNFCIMMPPPNV
                     TGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIATQNVVEKQLLVQGIKKE
                     ELGREKFIEKVWEWKEQSGGKILDQMRTLGITPAWSRLRFTMDEGLANAVKKAFVELY
                     DKRLIVRGNYMINWCTHDGALSDIEVEYKENKGKLYHIKYFLKDSDEFLVVATTRPET
                     FFGDTAVMVHPDDERYTKFVGKEVILPISKKAIKIIADEHVEKEFGTGVVKVTPAHDM
                     NDYEVGLRHNLEFISVFDEKGILNEHCLEFQGLERLEAREKIVAKLESLGFIEKIEEY
                     NNQIGYCYRCNNIVEPYISKQWFVKKEIAQESIEKVALGESKFYPNHWINSFNAWMKD
                     LRDWCISRQLWWGHQIPVYYCECSHEWASQHTPKTCPKCQSQNFKQDEDVLDTWFSSG
                     LWAMSTLGWGNENWGKDKIWSEKDLKDFYPNSLLITGFDILFFWVARMMFQSTNALHQ
                     LPFKDIYLHALVKDEQGRKMSKSLGNVIDPNESIKEYSADILRFTLALLAIQGRDIKL
                     SNDKLLQVRNFTNKIYNATNYLLLNESKFEDLENITLHSELAKYIYVKFQTCVKDVRE
                     NLDNYRFNDAANTLYKFFWDDFCDWGIELSKAEKSSVKELGSVFKEALKLLNPFMPFI
                     SEYLYHKLSDTELKTSPSIMISKYPKFKEQDKNIEKIFSLLIESIVGIRRAKSLIDLG
                     NSKIEKAYIKFNDKKIEDEIKAYMNFIMMLAKCEQIEFSEEKLPKAICDVSENLEIFI
                     TLENVDLSGILTRLENQKNKLEKESFKLNSMLSNEKFIANAPKEVVEQNKEALENLKI
                     QLEKISVELQNLRG"
     gene            3690..4700
                     /locus_tag="ACJFD7_001028"
     CDS             3690..4700
                     /locus_tag="ACJFD7_001028"
                     /EC_number="7.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0033232 - ABC-type D-methionine
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0048473 - D-methionine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HGG0859848.1"
                     /translation="MIKIKNLKKYYGKELVINDVSLEIKKGEIYAIVGHSGAGKSTLL
                     RCINGLENYQEGSLKVFDQEIKDLSQKKSKELRMLRKDIGMIFQNFALMERKNVFENV
                     AMPLRTHYTQCKFHAKLFNKEYMSEKEIAQKVNSLLEIVGLDHKNKSYPRELSGGQKQ
                     RVAIARALALNPKILLSDEATSALDPNTTKNILELISKINAEFGITVVLVTHEMDVVK
                     DIAQKALLLEHGQIIGSGAIDELFLRPNAKMKEFLGESDFLPEHGLNIKLYFPKEVAQ
                     NSVITHMARTLNIDFNIVWGKIEKLNGKALGNLVININEKDKDKVLDYIEKSGVLWEV
                     AS"
     gene            4697..5608
                     /locus_tag="ACJFD7_001029"
     CDS             4697..5608
                     /locus_tag="ACJFD7_001029"
                     /EC_number="7.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033232 - ABC-type D-methionine
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0048473 - D-methionine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter permease"
                     /protein_id="HGG0859849.1"
                     /translation="MNEENISIVSAFFSRISQFFNEFSWQDIKEVSLSSITSFSENYE
                     NILKPALNETIYMSLMAVLFGFLLAIIPGILLAIWDKNGIKENKIAYSILDFITNILR
                     AFPFLILIVVLLPLSKIIVGTSIGTNAAIVPLAIGIAPYLAKMLESAFKEIDKGIIEA
                     AKSYGASNIQIIFKVIFSEALPAIISGITLTLIFTIGFSALAGTVGGGGLGDVAIRYG
                     YERFNKEVMIQTVVILLILVQLVQILGNLFYTWAKNSKTTYIIATLLILLGVSIVINI
                     NNDENFFWQVIVFILFLGSLLYKGFKK"
     gene            5800..6573
                     /locus_tag="ACJFD7_001030"
     CDS             5800..6573
                     /locus_tag="ACJFD7_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HGG0859850.1"
                     /translation="MKIKSLFIASILTLSLNANALETITVGATPVPHAEILEQVKPDL
                     EKQGYKLEIKEFTDYVLPNLAVDNGEADANFFQHTPYLEEFNKNKGTKLIKVAAIHIE
                     PMAVYSKKYKSLDDIKEGVKIAIPNDPTNESRALDIITKKGLVKFKNKALKTPLDIID
                     NPKKIKFIELKPAQLPRALDDVDFAVINSNYALSANLNPAKDSVFIEDKESPYANILV
                     VRVGHENDPKIKALIQALQSDKIKQFIIEKYNGSVLPAF"
     gene            6622..7392
                     /locus_tag="ACJFD7_001031"
     CDS             6622..7392
                     /locus_tag="ACJFD7_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HGG0859851.1"
                     /translation="MNLFKIIILACILNLSSLFAQNITIGATPNPFGSLLELMKDDFK
                     NKGYELKIVEFSDYILPNRALEEKELDANLYQHKPFLEEYNLKKGSNLIATTPVLIAP
                     VGVYSKKIKNLENLKEGARVAIPNDATNESRALELLEKAKLIELNKNTLKTPLDINKN
                     PKKLKFIELKAAQLPRALDDVDIAIINSNFALGAGLNPSKDTIFREDKNSPYVNYVVV
                     HSEDKNSEKTKVIDEILRSDKFKAIINKHYKDILIPAF"
     gene            7402..8178
                     /locus_tag="ACJFD7_001032"
     CDS             7402..8178
                     /locus_tag="ACJFD7_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HGG0859852.1"
                     /translation="MNIKKIFLSVLFTISLSFGADKTIIIGATPTPYAEILNFSKPLF
                     QEKGWKLIVKEFNDYNIPNIALNEKDLDANLYQHKPFLDDFNTHKGTKLSSLGAIVLV
                     PMAIYSNSIKDIKDIPNGAKIAIPNDATNESRALDLLAKANLIEFKSQSTLKTPIDIS
                     KNPKKLKFIELKAAQLPRALNDTDLAIITTNYALGAGLNPLKDGIFMEDKDSLYAIVL
                     ATRKGEETSQKSLVIKEILTSDKIKNFIIEKYKGSVIPTF"
     gene            8262..8924
                     /gene="flgA"
                     /locus_tag="ACJFD7_001033"
     CDS             8262..8924
                     /gene="flgA"
                     /locus_tag="ACJFD7_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation chaperone
                     FlgA"
                     /protein_id="HGG0859853.1"
                     /translation="MKIIFLTFFIVINYIQAASLEEIKTALAKEFRNNFPKIIISQID
                     LKITSLPKDFDQYEFLRIANGRFNQAQGFLRAEFKTPQNIQKNVFFRYFIQANLEVLK
                     SERAIKRGDKLGAFDYKSVLIDFDKVPLNALTLDDVDNLVAKSNINKNAILRANMFKT
                     TALIRRNDPIIGVLSEANVDVLIELVALQSANMGERIRAKNKEGKVMQGIVVGKNRMI
                     IQ"
     gene            8921..9484
                     /locus_tag="ACJFD7_001034"
     CDS             8921..9484
                     /locus_tag="ACJFD7_001034"
                     /EC_number="2.5.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0106141 - flavin prenyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HGG0859854.1"
                     /translation="MKVLLGISGSSSVNLGLKLLKNLENQCELYCILTQGAKLSFKTE
                     NQANLEEICQENFKYTHFLDDKNLSLSVASGSFGIEKTIIAPCSISSLAKIHAGFADT
                     LLMRAAAVALKERKKLILGVREMPFSTLNLEHMLKLSQMGVIIAPPIIASYSKANNLE
                     QMENFIAGKWLDLLEIKHNLYEKWQNF"
     gene            9524..10000
                     /gene="coaD"
                     /locus_tag="ACJFD7_001035"
     CDS             9524..10000
                     /gene="coaD"
                     /locus_tag="ACJFD7_001035"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004595 - pantetheine-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HGG0859855.1"
                     /translation="MTCLYPGTFDPITNGHLDVIKRALKIFDEVIVAIAKSEHKKPCY
                     DLEKRKELALLATQNLKNVKIIAFDNLLVDLAKELKVNTIIRGLRAVSDFEYELQIGY
                     ANHALWEDMETIYLMPSLKHAFISSSIVRSIVAHGGDVSSLVPKEILPFLKDQSCM"
     gene            9991..10569
                     /gene="tmk"
                     /locus_tag="ACJFD7_001036"
     CDS             9991..10569
                     /gene="tmk"
                     /locus_tag="ACJFD7_001036"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006233 - dTDP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HGG0859856.1"
                     /translation="MYVVFEGIDCVGKSTQISLLKEIYKDAIFTLEPGGTELGKHLRE
                     ILLNKTHPINKRAELLLFLADRAQHFEEILKTNQNKLIISDRSFISGMAYAKDFENDL
                     LFALNSFALENFFPQKIIFLKGDANLIQERLSQKELDSIEKRGIEYFLSVQDKLEKVL
                     HFLKEKISVEILTLDAKESKEKLHQQIKEFLQ"
     gene            10566..11792
                     /gene="hisS"
                     /locus_tag="ACJFD7_001037"
     CDS             10566..11792
                     /gene="hisS"
                     /locus_tag="ACJFD7_001037"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HGG0859857.1"
                     /translation="MINALKGMKDLLDKDAYYYEKVIKICEEVAKNYGFTFINTPHLE
                     LCTLFKRSVGESSDIVGKEMYEFIDKGENHVCMRPEGTAGVVRAYIEKKLDKNTSVKR
                     WFYYGSMFRYERPQKGRLREFHQFGVESLGIPNVYEDASIILMLVEIFSRLGIDFKLQ
                     LNSLGCSQCLPKYRDRLVEFLDSKEGFCEDCLRRKNLNPIRVLDCKNEHCQNLLENAP
                     LLINNLCTSCQKDFETLQQILKDNGVKFELDSKLVRGLDYYSKTAFEFISDEIGAKAA
                     IAGGGRYDRLIEYLGGKSGYGIGFAMGIERIITILEQKEEKIQREGIYLCAMDEIYIQ
                     KLLHIATNLRKEYKVLLSYEARKLAKHLENADKNNTEIFLCMGENEAQNESLFYKNLA
                     KKEEKMIKISDLKKVL"
     gene            11789..13624
                     /gene="speA"
                     /locus_tag="ACJFD7_001038"
     CDS             11789..13624
                     /gene="speA"
                     /locus_tag="ACJFD7_001038"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008792 - arginine decarboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006527 - arginine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HGG0859858.1"
                     /translation="MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYK
                     GPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK
                     DYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGL
                     NELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLL
                     KENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLA
                     VEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIA
                     PVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLF
                     DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSI
                     PDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKEN
                     YFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYD
                     IHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV"
     gene            13625..14263
                     /gene="cysE"
                     /locus_tag="ACJFD7_001039"
     CDS             13625..14263
                     /gene="cysE"
                     /locus_tag="ACJFD7_001039"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0009001 - serine O-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HGG0859859.1"
                     /translation="MNFWGIIKEDFSQPKAQDPAFNSCIELFFNYPGVWAVVNYRFAH
                     FFYIRNFKRIARMISGISQFLTGVDLHPGAELGRRIFIDHANGVVIGQTAIIEDDVLI
                     YQGVTLGGTSLEKGTKRHPTIKKGVIIGSGAKVLGNITIGENAKIGSNAVVVKDIGAN
                     LTAVGIPAYIIEERKNKNIRAIDANCDDKLEKLEKKILELENLILKQPESQK"
BASE COUNT         5488 a         2021 c         2378 g         4392 t
ORIGIN      
        1 atttaacttt ctgtttttaa gggatagcaa atgaatttga aaattttttc tattattgtt
       61 ggcatattaa ttgctgttat tgtgatatta ggtggaacat attattatct ttttgaatat
      121 tcaaaaccaa agaattacac cttaaatacc aacacttaca ccgaacaaaa atcgtatacc
      181 aataactacg ataattccta ttcaccctcg atccaaacca acaatagttc atcaaatgta
      241 aatactaata acaataccat ccaaaagcaa gaaacaaacc cattagatga aaatcaaagc
      301 ttaaataacg atacattcaa tacatcaata agcgaaaaca atcaaagctt aaataatgac
      361 accaatacaa gtaataatat taatacaaat gaaaataagc aaattttaga tacggataaa
      421 gaaaaattaa aacaagaaaa taaacaagcc aaaatagaag ctcttaaaaa agaaatcagc
      481 aaacaacaaa agatcttaga aagagaaaga gctgtaaaaa aagaacttca atcaaacaaa
      541 tcaaacaaaa ataaatatct aaataccgct agagagtatc taagcatagg aaaaaacagt
      601 cgtttagaac ctgagcttag cacagaaaat atgaaagttt acattttaga tggaaaattt
      661 ttaagccaat acagaatcaa tctgttaaaa gatatgctaa gcgttataca agataatgca
      721 aaagattatt atctaagtat ttttgttaaa atgctaccaa aaggggaaat gaaattaact
      781 atctataaca aagaaattat cttttcagat atgaaaaaag cttataaata tattagttta
      841 gatagattaa gcccatattt aaacaatcca aaagaattaa atgaacatgt agcacgtgaa
      901 gaaattttag aaagacttaa acttcaaatt aaaaaagatg gcaaaggaag tgatttttct
      961 aaacatatca aaagtttgaa aactggactt aatacagcac aatatttctt cccgttttgt
     1021 gaaattatag aaattagctc tattaaataa gctaaaacaa taaaggcaaa taatgtatga
     1081 taaaaattta gaaaaagagt attatcaaat ttgcgaagaa cgcggatatt ttgaaatcaa
     1141 tggcaataaa accatacaag aaaaagataa aaatttctgc attatgatgc ctcctcctaa
     1201 tgtcaccgga gttttacaca taggacatgc tttaactttt actctacaag acattatgac
     1261 gcgttacaaa agaatggacg gttataaggt actttatcaa ccagggcttg atcacgcagg
     1321 tattgccact caaaatgttg tagaaaaaca actccttgtt caaggcatta aaaaagaaga
     1381 actaggtaga gaaaaattta tagaaaaagt ctgggagtgg aaagagcaaa gcggtggaaa
     1441 aattttagac caaatgagaa cactaggcat cactcctgca tggagtcgtt tgcgttttac
     1501 tatggatgaa ggtttagcca atgcagtgaa aaaagccttt gtagaacttt acgataaaag
     1561 acttattgta cgtggaaact acatgataaa ttggtgtact cacgacggtg ctttaagtga
     1621 tatagaagtt gaatacaaag aaaacaaagg aaaactctat catattaaat actttttaaa
     1681 agatagcgat gaatttttag tagtagccac aacgcgtcct gaaacttttt ttggcgatac
     1741 tgcagttatg gtgcatcctg atgatgaacg ctatactaaa tttgtgggca aagaagtgat
     1801 tttgcctata agtaaaaaag ccattaaaat catagctgat gaacatgtag aaaaagaatt
     1861 tggaacaggg gttgtaaaag ttactcccgc tcatgacatg aatgactatg aagtaggact
     1921 tagacataat ttagaattta taagtgtttt tgatgaaaaa ggaattttaa acgagcattg
     1981 tttagagttt caaggtttag aacgcttaga agcaagagaa aaaatcgtag ccaaacttga
     2041 aagtcttggt tttatagaaa aaatagaaga gtataacaat caaataggat attgttatcg
     2101 ttgcaacaat atagttgaac cttatatctc caaacaatgg tttgtaaaaa aagaaatcgc
     2161 ccaagaaagt atagaaaaag ttgcgcttgg agaaagtaaa ttttacccaa atcactggat
     2221 aaatagcttt aatgcttgga tgaaagattt aagagattgg tgtatttcaa gacaactttg
     2281 gtgggggcat caaattcctg tatattattg tgaatgctct catgaatggg caagccaaca
     2341 tacgcctaaa acttgtccaa aatgtcaaag tcaaaatttc aaacaagatg aagatgtgct
     2401 tgatacttgg ttttcttcag gactttgggc tatgagtact ctaggctggg gaaatgaaaa
     2461 ttggggtaaa gataaaattt ggtctgaaaa ggatttaaaa gatttttatc ccaattcttt
     2521 actcattaca ggttttgata ttttattttt ctgggtggct agaatgatgt ttcaaagcac
     2581 taatgcctta catcaacttc cttttaaaga tatttattta catgctcttg tgaaagatga
     2641 gcaaggtaga aaaatgagca aaagccttgg aaatgttatc gacccaaatg aaagcattaa
     2701 agaatatagt gctgatattt tacgctttac tttagcactt cttgctatac aaggacgcga
     2761 tattaaactt agcaatgata aacttttaca agttagaaat tttacaaata aaatttataa
     2821 tgctacaaat tatctgcttt taaatgaaag taaatttgaa gatttggaaa atatcacact
     2881 tcattcagaa ttagcaaaat atatttatgt caaatttcaa acttgtgtta aggatgtaag
     2941 agaaaattta gacaattatc gctttaatga tgcagccaat actctatata aattcttttg
     3001 ggatgatttt tgcgattggg gtatagagct tagcaaagcc gaaaaatcga gcgttaaaga
     3061 acttggtagt gttttcaaag aagctttaaa acttttaaat cctttcatgc cttttatcag
     3121 cgagtattta taccacaaac taagcgatac agaacttaaa acaagccctt ctattatgat
     3181 aagcaaatat ccaaaattta aagaacaaga taaaaatata gaaaaaatct tttctttact
     3241 catagaaagc atagttggta tccgccgtgc taaaagttta atcgatcttg gaaattctaa
     3301 aatagaaaaa gcttatatca aatttaacga taaaaaaatc gaagatgaaa tcaaagctta
     3361 tatgaatttt atcatgatgc tcgcaaagtg cgagcaaata gaatttagtg aagaaaaatt
     3421 accaaaggca atatgtgatg tcagcgagaa tttagaaatt tttattacgc ttgaaaatgt
     3481 tgatttaagc ggtattttaa caagacttga aaatcaaaaa aataagcttg aaaaagaaag
     3541 tttcaagctt aactccatgc tttcaaatga aaaattcatc gctaacgcac ctaaagaggt
     3601 ggtggagcaa aataaagaag ctctagaaaa tttaaaaatt caacttgaaa aaatatcagt
     3661 tgaacttcaa aatctaagag gttaaaaatt tgataaaaat aaaaaattta aaaaaatatt
     3721 atggcaagga actcgtgata aacgatgttt ctttggagat taaaaagggt gaaatttacg
     3781 ccatagtagg tcatagtgga gctggaaaat ccactctttt aagatgtatt aatggacttg
     3841 agaattatca agaaggaagt ttaaaagtct ttgatcaaga aattaaagat ttaagtcaaa
     3901 aaaaatcaaa agagttaaga atgcttagaa aagatatagg gatgattttt caaaattttg
     3961 ccctaatgga gcgcaaaaat gtatttgaaa atgttgctat gcctttaaga acacactata
     4021 ctcagtgtaa atttcatgcc aagcttttta ataaagaata catgagcgaa aaagaaattg
     4081 cccaaaaagt caattcctta cttgaaatcg tagggcttga tcataaaaac aaatcctacc
     4141 caagagaact gagcggaggg caaaaacaac gtgttgctat tgctagagcc ttagctttaa
     4201 acccaaaaat tttacttagt gacgaagcta cttcggctct tgatccaaac actacaaaaa
     4261 atattttaga gcttatatct aaaatcaatg ctgaatttgg gattactgtt gttttagtaa
     4321 ctcacgaaat ggatgtggta aaagacatag ctcaaaaagc tttattactt gaacatggac
     4381 aaatcatagg aagtggagca attgatgagc tttttttaag gcctaatgcc aaaatgaaag
     4441 aatttttagg agaaagcgac ttcttgcctg agcacggact taatatcaaa ctttactttc
     4501 caaaagaagt tgcccaaaat agcgtcatca ctcatatggc aagaactcta aatatagact
     4561 ttaacatagt ttggggtaaa atagaaaaac tgaatggaaa agccttggga aatttagtta
     4621 taaatataaa tgaaaaggat aaagacaagg ttcttgatta catagaaaaa agtggagtat
     4681 tatgggaggt ggcatcatga atgaagaaaa catctctatt gtcagtgctt tttttagtag
     4741 aatttctcaa ttttttaatg aattttcttg gcaggatatt aaagaagtga gtttaagttc
     4801 tattacaagt ttcagtgaaa attatgaaaa cattttaaaa cctgcgctta atgaaacaat
     4861 ttatatgagt ttaatggctg tactatttgg atttttattg gctatcattc ctggaatttt
     4921 acttgctatt tgggataaaa atggaattaa agaaaataaa atcgcttata gtattttaga
     4981 ttttattacc aatatattac gcgcctttcc atttttaatt cttatagttg ttcttttacc
     5041 actttctaaa atcatagtag gcacaagcat aggtacaaat gctgccatag ttcctttagc
     5101 tatcggaata gctccttatt tggcaaagat gcttgaaagc gcttttaaag aaatagacaa
     5161 aggaatcata gaagcagcaa aaagttatgg tgctagcaat attcaaatta tcttcaaggt
     5221 tatctttagt gaggcccttc ctgctataat tagcggaatt accctaactt tgatctttac
     5281 cattggtttt tctgctcttg ctggaactgt cggtggtgga ggtttgggag atgtcgctat
     5341 tcgctatggt tatgaaagat ttaacaaaga agttatgatt caaactgtag ttattttact
     5401 tatattagtt cagttagttc aaattctagg taatttattt tatacttggg ctaaaaatag
     5461 taaaactaca tatatcattg ccactctatt gattttactt ggagttagta tagttatcaa
     5521 tataaacaat gatgaaaatt tcttttggca agtaattgtt tttatcttat ttttaggaag
     5581 tttgctttat aaaggtttca aaaaataagg agattatatc tccttttaag ataaatataa
     5641 gtttttttaa gtaaaattta aacaaaaaac taaaggaatt aaaatgatgt atcagatgcg
     5701 ttaatctgac tatcaacaag tttttatatg cttcttcctg atagtcagag tgaatttatt
     5761 aagattaaag caagcacaaa atgactaaaa aggaaaaaaa tgaaaatcaa atctttattt
     5821 atagcaagta ttttaacatt aagtcttaat gcaaatgcat tagaaaccat cacagttgga
     5881 gcaactcccg tccctcatgc tgaaatccta gagcaagtaa aacctgattt agaaaaacaa
     5941 ggctataaac ttgaaattaa agaatttaca gattatgttt tacctaatct agctgttgat
     6001 aacggagaag ccgatgcaaa ttttttccaa cacactcctt atttggaaga atttaataaa
     6061 aacaaaggca ccaaacttat caaagtagct gccatacaca tagaacctat ggctgtttac
     6121 tccaagaaat ataaaagtct agatgatatt aaagaagggg ttaaaatcgc cattccaaat
     6181 gatccaacca atgaaagtag agctttagat attattacaa aaaaaggttt ggtaaaattt
     6241 aaaaataagg ctttaaaaac acctcttgat attatagaca atcctaaaaa aattaaattt
     6301 atagaattaa agcccgcaca acttccaaga gctttagatg atgttgattt tgctgtaatt
     6361 aattccaact acgctctctc tgcaaatcta aatcctgcaa aagatagcgt atttatcgaa
     6421 gataaagaaa gcccgtatgc aaacattctt gttgtaagag tgggacatga aaacgatcca
     6481 aaaatcaaag ccttaatcca agctctacaa agtgataaaa tcaaacaatt tatcatagaa
     6541 aaatacaacg gatctgtttt acctgctttt taattttgtc ccttacctag ggactttttt
     6601 cttaaataca aaggagtttt tatgaattta tttaaaatta ttatactcgc ttgcattcta
     6661 aatttatcta gcctatttgc acaaaacatt actataggag ccactccaaa tccttttggt
     6721 agcttactag aactaatgaa agatgatttt aaaaacaaag ggtatgagct taaaatagta
     6781 gaattttcag actatatttt gcccaatcgt gcattagagg aaaaagaact tgatgcaaat
     6841 ttatatcaac acaaaccttt tttagaagaa tacaacctaa aaaaaggttc aaatttaatt
     6901 gcaacaacgc ctgtacttat agctccagta ggagtttata gtaaaaaaat caaaaattta
     6961 gaaaatctta aagaaggtgc tagagttgct atacctaatg atgcgaccaa tgaaagcaga
     7021 gctttagagc ttttagagaa agcaaaatta atagagctta acaaaaatac tctaaaaacc
     7081 ccattggaca taaacaaaaa tccaaaaaaa cttaaattta tagaacttaa agccgcacaa
     7141 cttccaagag ctttagatga tgttgatatt gctataatta attctaattt cgcacttgga
     7201 gccggtctga atccaagtaa agatactatt tttagggaag ataaaaatag cccttatgta
     7261 aattatgttg tggtacactc agaagataaa aatagcgaaa aaaccaaagt aattgatgaa
     7321 attttaagaa gcgataaatt taaagccatc attaataaac attataaaga tatattaatc
     7381 ccagcttttt aggagtataa tatgaatatt aaaaaaatat ttttaagtgt tttatttaca
     7441 attagcctta gttttggggc ggataaaacc ataatcatag gtgcaacacc aacgccttat
     7501 gctgaaattt taaatttctc taaaccctta tttcaagaaa aaggttggaa gttaatagtt
     7561 aaggaattta atgactataa tatacctaac atcgctttaa atgaaaaaga tttagatgca
     7621 aatttatatc agcataaacc ttttttagat gattttaata cccacaaagg aacaaaatta
     7681 agttctttag gtgctattgt tttagttcct atggctatat attctaactc cataaaagat
     7741 ataaaagaca ttcctaatgg tgctaaaatc gctataccta atgatgctac caatgaaagc
     7801 agagctcttg atttactagc taaagcaaat ttaatagagt ttaaaagtca aagcaccctt
     7861 aaaaccccta ttgatataag taaaaatcca aaaaaactta aatttataga gcttaaagcc
     7921 gcacaacttc caagagccct aaatgatact gatttggcta ttattaccac aaactatgct
     7981 cttggagcag gcttaaaccc tttaaaagat ggtattttta tggaagataa agatagttta
     8041 tatgctattg ttttagctac aagaaaaggt gaagaaacaa gtcaaaaaag tcttgttatt
     8101 aaagaaattt taacaagcga taaaattaaa aattttatca tagaaaaata caaaggctct
     8161 gttatcccta ctttttaact ctatacaaag ccttctaaag gctttgttaa acttataaaa
     8221 gctaaaatac tatttattgc attataattc ttaggataaa aatgaaaatt atttttttaa
     8281 ctttttttat tgtgataaat tatatccaag cagctagttt agaagaaatc aaaacagcgc
     8341 tagctaaaga atttagaaat aattttccta aaattataat ttctcaaatt gatttaaaaa
     8401 taacatcatt gcctaaagat tttgatcaat atgaatttct aagaatcgct aatgggcgtt
     8461 ttaatcaagc acaaggcttt ttaagggctg aatttaaaac tccgcaaaat atacaaaaaa
     8521 atgtattttt tagatatttc attcaagcaa atttagaagt tttaaaaagc gaacgcgcta
     8581 taaaaagagg agataaactt ggagcttttg actataaaag cgtattgatt gattttgata
     8641 aagttccttt aaatgcctta accttagatg atgtagataa tcttgtagct aaaagcaata
     8701 ttaacaaaaa cgccatttta agagcaaata tgtttaaaac cacggcttta atacgccgaa
     8761 atgatcctat aatcggggtt ttaagcgaag caaatgttga tgttttaatc gaacttgtgg
     8821 ctttgcaaag tgcaaatatg ggcgaaagga ttcgtgcaaa aaacaaagaa ggtaaagtta
     8881 tgcaaggtat cgtagtgggt aaaaatagga tgattataca atgaaagttt tattgggaat
     8941 ttctggttca agcagtgtca atttaggctt aaaattatta aaaaatttag aaaatcaatg
     9001 cgaactttat tgtattttaa cccaaggtgc aaaacttagc ttcaaaactg aaaatcaagc
     9061 aaatttagaa gaaatttgtc aagaaaattt taaatacact cattttttag atgataaaaa
     9121 tttaagtcta agtgtagcaa gtggatcttt tggaatagaa aaaaccatca ttgctccttg
     9181 ttcaatttca agtttagcaa aaattcacgc tggttttgca gacactcttt taatgcgtgc
     9241 tgcagcagtg gccttaaaag aaagaaaaaa acttatctta ggcgtacgcg aaatgccttt
     9301 ttctacttta aatttagaac atatgttaaa acttagccaa atgggagtta ttatcgcccc
     9361 tcctattatc gcaagctatt ctaaagcaaa caatctagag caaatggaaa attttatcgc
     9421 aggtaaatgg ttagatcttt tagaaataaa acacaattta tatgaaaaat ggcaaaattt
     9481 ttagtttaaa tttgttatat ttttaaaaaa aattggagca aaaatgactt gtttatatcc
     9541 tgggactttt gatcctatta ccaacgggca tttagatgtt ataaaacggg ctttaaaaat
     9601 ttttgatgaa gtcatcgttg ccatagcaaa aagtgaacat aaaaaacctt gctatgattt
     9661 agaaaaacgc aaagaactag ccctgctcgc aacacaaaat ttaaaaaatg ttaaaatcat
     9721 tgcttttgat aatttacttg tagatttagc caaagaatta aaagttaata ctataatccg
     9781 tggacttaga gcagtgagtg attttgaata cgaattgcaa attggctatg caaatcacgc
     9841 actttgggaa gatatggaaa ccatttatct tatgccaagt ctaaaacatg cttttatttc
     9901 aagttctatt gtgcgttcta tagtagcaca tgggggtgat gtaagttctc ttgttccaaa
     9961 agaaattcta ccttttttaa aggatcaatc ttgtatgtag tttttgaagg tattgactgc
    10021 gtaggaaaaa gtacgcaaat ttcactttta aaagaaattt ataaagacgc cattttcaca
    10081 ctcgaacctg gcggaacaga acttggaaaa catttaagag aaattttact taataaaact
    10141 catcctatta acaaaagagc tgaactcttg ctttttttag ctgatcgtgc tcaacatttt
    10201 gaagaaatct taaaaaccaa tcaaaacaaa ctcattatta gcgatagaag ttttatttca
    10261 ggcatggctt atgccaaaga ttttgaaaac gatttgcttt ttgctttaaa tagttttgct
    10321 ttagaaaatt tttttccaca aaaaattatc tttttaaaag gagatgcaaa ccttatccaa
    10381 gaacgcctca gtcaaaaaga actagatagt atagaaaaac gtggcattga gtatttttta
    10441 agcgtgcaag ataaactcga aaaagtgctt cattttttaa aagaaaaaat ttctgtagaa
    10501 attttaacac ttgacgcaaa agaaagtaaa gaaaaattac accaacaaat aaaggaattt
    10561 ttacaatgat taacgcttta aaaggaatga aagatttatt agataaagat gcatattatt
    10621 atgaaaaagt gattaaaatc tgcgaagaag tagctaaaaa ctatggcttt acttttatca
    10681 atacaccgca tttagaactt tgcacccttt ttaaaagaag cgtaggagaa agttctgata
    10741 tagtaggtaa agaaatgtat gaatttatcg ataaaggcga aaatcatgtt tgcatgcgtc
    10801 ctgaaggaac tgctggggtg gtgcgtgcct atatagaaaa aaaactcgat aaaaacacta
    10861 gtgtgaaaag atggttttat tatggttcta tgtttcgtta tgaaagacct caaaagggtc
    10921 gcttaagaga atttcatcaa tttggagttg aaagccttgg catacctaat gtttatgaag
    10981 atgcaagcat tattttaatg ctagtagaaa ttttctcacg ccttggtatt gattttaaac
    11041 ttcaacttaa ttctttaggc tgctcacaat gcttgccaaa ataccgcgat aggctcgttg
    11101 aattcttaga ttccaaagaa ggtttttgtg aagattgttt gcgtagaaaa aatttaaatc
    11161 ctattcgtgt cttagattgt aaaaatgagc attgtcaaaa tttgcttgaa aatgctccgc
    11221 ttttgatcaa taatttatgc acctcttgcc aaaaagactt tgaaacactg caacaaattt
    11281 taaaggataa tggagttaaa tttgagttag attcaaaact tgtgaggggt ttggattatt
    11341 attctaaaac ggcttttgaa tttataagcg atgaaatagg agcaaaggct gctatcgcag
    11401 gtggaggacg ctacgataga cttatagagt atttaggtgg aaaaagtggc tatggtatag
    11461 gttttgccat gggtatagaa agaattataa ctattttaga acaaaaagaa gaaaagattc
    11521 aaagagaagg aatttatctt tgtgctatgg atgaaattta tatccaaaaa cttttgcata
    11581 tcgctacaaa tttaagaaaa gaatataaag tacttttaag ctatgaagca agaaaactag
    11641 ccaaacatct tgaaaacgcg gataaaaata atactgaaat ttttctttgc atgggagaaa
    11701 atgaagcaca aaatgaaagt ttgttttata aaaatttagc aaaaaaagaa gaaaaaatga
    11761 ttaaaatttc agacttaaag aaggttttat gatggattat ggtattgata tttggggaaa
    11821 tgaaaatttc attatcaaaa atggtaaagt ttgtatcaat tacgagaaaa aacctgctat
    11881 tattgatata gttaaagaat taagagatga tggatacaag gggcctttac ttttaagatt
    11941 tcctcatctt atccaaaaac aaattgaaaa tatttacgga aatttcaata aagcaagaaa
    12001 ggaatttggc tataaaggag gatttaacgc tgtttatcct ttaaaggtca atcaataccc
    12061 tggttttgta aaaaatcttg taaaacttgg aaaagactat aactatggac ttgaagcagg
    12121 ttctaaggca gagcttttac tcgctatggc ttataataac gaaggcgcac ctattaccgt
    12181 aaatggcttt aaagatagag aacttatcaa cataggcttt atcgcagctg aaatgggaca
    12241 taatatcact ttaaccatag aaggacttaa tgaacttgaa gctatcatag acatagctaa
    12301 agaacgcttt aaacctaaac caaatatagg cttacgtgta cgtttgcatt ctgctggagt
    12361 tggaatttgg gcaaaaagcg gtgggattaa ttctaaattt ggacttacat ccactgaact
    12421 catagaagca gtaaatttac tcaaagaaaa caaactttta gaacaattta ccatgattca
    12481 ctttcatcta ggctcacaaa ttaccgaaat tcaccccttg aaaaaagcct taaatgaagc
    12541 aggaaatatc tatacagaac ttagaaaaat gggagctaaa aatctaaaag ctatcaatct
    12601 tggtggcggt ttagctgtgg aatactcaca atttaaaaat gaaaaaagta gaaattacac
    12661 cctaagagaa tacgctaacg atgtagtttt tatcctaaaa aacatagccg aacaaaaaaa
    12721 agatttagag cctgatattt tcatagaaag tggacgtttt gtagcagcta atcacgctgt
    12781 tttaatcgct cctgtattag aacttttttc tcaagaatac gcagaaaaca aactcatact
    12841 taaaaaacaa aatccaaaac ttatcgatga gctttatgat ctttataaaa gtataaaacc
    12901 ttccaatgct ttagaatact tgcacgatag catagatcat ttagagagta ttttaactct
    12961 ttttgatttg ggctatgtgg atttacaaga tcgttccaat gctgaaattt taactcattt
    13021 gattacaaaa aaagccatct tgcttttagg cgataagcaa aatcctgcgg atttacttgc
    13081 catacaagat gaagtgcaag aaaggtattt ggtaaatttt tcgctctttc aaagcatacc
    13141 cgatttttgg ggtttagaac agaatttccc catcatgcca cttgatcgct tagatgaaga
    13201 accgacacga agtgcaagta tttgggatat aacctgcgat agcgatggag aaatttcata
    13261 ctctaaagat aaacctttat ttttgcacga tgtagatgta gaaaaagaaa attattttct
    13321 agggtttttt cttgtaggtg cctatcaaga agtacttgga atgaaacaca atctttttac
    13381 tcatcctact gaagctatta taagcatcaa tgaaaaaggc tatgaagtcg aggggattat
    13441 agaagcgcaa tccatacttg ataccttaga agatttagac tatgatatac acgctatcat
    13501 ggatatactt aatgaacgca taagtaattc taagcttgta aatgataagc aaaaaaagca
    13561 tattttaggc gaactttatc ttttcttaaa tgataatggt tatttaaaaa gcataggagt
    13621 ttagatgaat ttttggggta ttataaaaga agatttttct cagccaaagg cacaagatcc
    13681 agcttttaat tcttgtatag aacttttttt taattaccct ggagtatggg ctgtagtaaa
    13741 ttaccgcttt gcacattttt tttacataag aaattttaaa cgcattgcta gaatgattag
    13801 cggaatttca caattcttaa ctggggtaga tttgcaccct ggagcagaac ttggaaggcg
    13861 tatttttata gatcatgcca atggagtggt tataggtcaa acagcaatta tagaagatga
    13921 tgttttaatt tatcaaggcg ttactttagg tggaacaagc cttgaaaaag gtactaaacg
    13981 ccatccaacc ataaaaaaag gagtgatcat aggctcaggc gcaaaagtgc ttggcaatat
    14041 caccatagga gaaaatgcca aaataggctc aaatgctgta gtggttaaag atataggtgc
    14101 aaatttaact gccgttggaa ttcctgctta tattatcgaa gagcgtaaaa ataaaaatat
    14161 tagagccata gatgcaaatt gcgatgacaa actagaaaag ttagaaaaga aaattttaga
    14221 acttgaaaat cttatattaa aacaacctga atcacaaaaa taataatttt ttataatac
//
LOCUS       DBBXPZ010000042        13938 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.044, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000042 DBBXPZ010000000
VERSION     DBBXPZ010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13938)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13938)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13938
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.044"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(20..334)
                     /gene="trxA"
                     /locus_tag="ACJFD7_001040"
     CDS             complement(20..334)
                     /gene="trxA"
                     /locus_tag="ACJFD7_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HGG0859860.1"
                     /translation="MGKYIELTSDNFAQAKEGVALVDFWAPWCGPCRMLAPVIDELAN
                     DFDGKAKICKVNTDEQGDLAAEFGVRSIPTLIFFKNGEVVDQLVGAQSKQAISDKLNS
                     LL"
     gene            complement(391..729)
                     /locus_tag="ACJFD7_001041"
     CDS             complement(391..729)
                     /locus_tag="ACJFD7_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HGG0859861.1"
                     /translation="MGLKAYLDGILGEDKACKFLKKQGFEILKRNFYSKFGEIDIIAK
                     KDEILHFIEVKFTQDDYEVSERLDRKKLEKILKTIEFYHLKNGISSDFQIDLICIKND
                     VIQFCENISF"
     gene            complement(729..1976)
                     /gene="hom"
                     /locus_tag="ACJFD7_001042"
     CDS             complement(729..1976)
                     /gene="hom"
                     /locus_tag="ACJFD7_001042"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HGG0859862.1"
                     /translation="MKVAILGYGTVGSAVVKFLLENDKLIRARCGQSITPVIALARSP
                     KKNALIPITHSVAEILNADVDVFVELMGGVDEAFKIVSEILKKKKAVVTANKAMLAYH
                     RYELENLAKNLAFGYEASVAGGIPIIKVLKEGLSANNILAIKGILNGTSNYILSSMSQ
                     KNMSFKQALQIAQNLGYAEADPTFDIEGQDAAHKLLVLSSIAYNLKAKPEDILIEGIS
                     EIAPEDMYFANEFEFTIKLLGIAKVRENKVELRVHPTMIDKEKMLAKVDGVMNAISIN
                     GDLLGESLYYGAGAGGEATASAVISDLMDIARDQVKAPMLGFVNTLEYELLSKDEIYT
                     KYYLRVKVEDKIGVLSKITQLMSENNISIDSFLQKPKKNDENYSTLFFTTHLTYEKSI
                     QNLLEILRKQDFIKTKPFMMRIE"
     gene            complement(1980..3182)
                     /locus_tag="ACJFD7_001043"
     CDS             complement(1980..3182)
                     /locus_tag="ACJFD7_001043"
                     /EC_number="2.6.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HGG0859863.1"
                     /translation="MFDEIRFNTIERLPNYVFAEVNAIKMAARRAGEDIIDFSMGNPD
                     GKTPQHIIDKLCESANKDKTSGYSTSMGIYKLRLAICNWYKRKYNVNLDPENEVVATM
                     GSKEGFVNLARAIINPGDVAIVPTPAYPIHTQAFIIAGGNVAKMPLAYNEKFELDENQ
                     FFENLHKTLNESIPRPKYVVVNFPHNPTTVTCEKSFYERLIATAKKERFYIISDIAYA
                     DLTYDDYKTPSILEIEGAKDVAVETYTLSKSYNMAGWRVGFVVGNKRLVSALKKIKSW
                     FDYGMYTPIQVAATIALDGDQTCVDEIRATYDKRMHILLEAFENAGWKLQKPRASMFV
                     WAKLPESKRHLKSLEFSKQLLQRASVAVSPGVGFGEAGDEYVRIALIENENRIRQAAR
                     NIKKYLKE"
     gene            complement(3194..4000)
                     /locus_tag="ACJFD7_001044"
     CDS             complement(3194..4000)
                     /locus_tag="ACJFD7_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859864.1"
                     /translation="MVKKIIILTLWVNISFAISSLELAKNLVNNPSKNSQLELLFSNN
                     SYIDNNGNCDIAKISQILKTNSLIALTLSNPQSLKLNFKAKADEVMFFKILSDVLTDA
                     GYIYFIPTDLILREGNIDYTIQVESQYVLDPGTLYNLLKENSVYIDNIKRIGAYDYEY
                     DLNFSNAVLKTNTNVNLNTPKSLEKPLKDYVLDLKNATNLIIDANDLDNWFPKIFFLD
                     KNLNLIKAVKSENKNNHFSELIPNGAIYAIVSDMYSLDNIRRGLKITLKK"
     gene            complement(3994..4932)
                     /locus_tag="ACJFD7_001045"
     CDS             complement(3994..4932)
                     /locus_tag="ACJFD7_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859865.1"
                     /translation="MLNWKKIQELNLKEVAAKTQIELDFLEALVEKNFAVLSRFNVKG
                     FVKILSREYELDFSDFNEEYEAYLNENNPTPQTKSKMITPKLDAYSQKSFNTWPFLIV
                     LIVLVIIGSGIYYFDTLRTFFKDEQNNTSATVIDIIGQAQENLKSLGGNNVVVIDNNK
                     AQETNQTESVLPSQNISLQENDKNISIENNISENNTTLLDEEKNTQIQEDTNTPKTDS
                     LKEAHFKTSTKIWIGLIDLKSLKKTSFVKEKDFNISLDKDQLILTGAAALTMFDQENK
                     EQKFPVGISKRFLIKDGKITSISAAEFVKLNKGKEW"
     gene            complement(4925..5608)
                     /gene="rlmB"
                     /locus_tag="ACJFD7_001046"
     CDS             complement(4925..5608)
                     /gene="rlmB"
                     /locus_tag="ACJFD7_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HGG0859866.1"
                     /translation="MIVYGKQIFFYILEYHKDCINELYLAKECDKITFSKIAKSGFKI
                     KKLDFKTAQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITR
                     TAYALGVGALIFIGEKLAMEGVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYAS
                     DGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIIKKCDECVGIAMKNNFDSLNVSAAFA
                     ILCDRMLNA"
     gene            complement(5622..6446)
                     /gene="rsmI"
                     /locus_tag="ACJFD7_001047"
     CDS             complement(5622..6446)
                     /gene="rsmI"
                     /locus_tag="ACJFD7_001047"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HGG0859867.1"
                     /translation="MLYFIPTPIGNLSDISFRALELLKTCDLVFCEDTRISKSLISLL
                     NTKFHTDIHISKFIALHSHNEKEVLASIDLKIFEKNVAYLSDAGMPGISDPGKALVEF
                     AQENNITYEILPGANAALVALVSSAFCQKEFIFIGFLANKGKERQKDIEKILNFPYPS
                     IIYESPKRILSLVEQIMILDSQREIFLIKEISKKFEKKFKGNAKELSEILKKSNLNGE
                     WVVVLQSKEQNFLQNTLCEKDIMDLELSLKAKAKLLSKINGKNAKEIYQKLLLSQD"
     gene            complement(6449..6649)
                     /gene="rpmE"
                     /locus_tag="ACJFD7_001048"
     CDS             complement(6449..6649)
                     /gene="rpmE"
                     /locus_tag="ACJFD7_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HGG0859868.1"
                     /translation="MKKEIHPEYVECKVSCACGNTFTTKSNKAELRVDICSNCHPFFT
                     GSEKIVDAAGRVEKFKKKYAMQ"
     gene            complement(6728..7384)
                     /locus_tag="ACJFD7_001049"
     CDS             complement(6728..7384)
                     /locus_tag="ACJFD7_001049"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HGG0859869.1"
                     /translation="MQFLYNKQAGEEFIQLQGENFNHLKVRRVKENSELNLRNLQDNF
                     LYNYTITNLTRNSCTLKFLNKKSQNIKQSELNLALAIIDIKILEKTLPFLNELGVKKL
                     HLVFTNFSQRNFKIDLERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPNAIMVD
                     FQGEQQSHFDEKELYFIGPEGGFNNDERLLFNRKISLKSSNILKSQTAIIAIASKILL
                     "
     gene            complement(7386..7793)
                     /locus_tag="ACJFD7_001050"
     CDS             complement(7386..7793)
                     /locus_tag="ACJFD7_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859870.1"
                     /translation="MDQSYEFFLALHLYSLYASGFLMLFYLILTQGNFKTEFIFIRRI
                     RLFLPIYYLFLALIIFTGCLLSAMKQFQMNVNIWVMIFSWILIFALAIFHFVCFKKAR
                     RFRKYATFRWISCLILPFEIFLLFLPFLIERYL"
     gene            complement(7793..8218)
                     /locus_tag="ACJFD7_001051"
     CDS             complement(7793..8218)
                     /locus_tag="ACJFD7_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HGG0859871.1"
                     /translation="MQKAKILIALSFFLLVLSACSNDEKNVSKTQNTDQEVVQIEQND
                     EKTELSDSNLPLPVDDEAQSSDDEHEANPSIINSLYKQKCATCHGEKGELKPKNSTAI
                     KTLSNKIFIQKIKTIKDKNHSFLSDEQIQNLADFINKGK"
     gene            complement(8218..8799)
                     /locus_tag="ACJFD7_001052"
     CDS             complement(8218..8799)
                     /locus_tag="ACJFD7_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-pyruvoyl tetrahydropterin synthase family
                     protein"
                     /protein_id="HGG0859872.1"
                     /translation="MIIRKLFEFENAHIVRFCSSKRCKSSIHGHSYKVEVLLESKYLD
                     NAGMVYDFGLLKTYIRQIIDSFDHAITLFKYDDAKYLEEMKKYSSRWICLPVNVSAEN
                     FCRVFFILIDALLKQTKMVNGEQGVTLQSIIVHETRTGYAQGFREDAYSELMPKISLQ
                     DIEFSNGIKVEWNDIDFYNKLKNEEIFINPKEI"
     gene            complement(8796..9539)
                     /locus_tag="ACJFD7_001053"
     CDS             complement(8796..9539)
                     /locus_tag="ACJFD7_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HGG0859873.1"
                     /translation="MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKND
                     KTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKQDFDPIVVITGGEPLIHYENP
                     EFIKFIQMLLKNKFEIHFESNGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNF
                     KALKAFKNYAKDSFYKFVLDANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNA
                     QKIAEFCIKNGYNYSDRIHIRLWNDKEGV"
     gene            complement(9542..10504)
                     /gene="moaA"
                     /locus_tag="ACJFD7_001054"
     CDS             complement(9542..10504)
                     /gene="moaA"
                     /locus_tag="ACJFD7_001054"
                     /EC_number="4.1.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HGG0859874.1"
                     /translation="MLIDQFGRKINYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLS
                     FEELFLFVKAAIDEGIEKIRITGGEPLLRKDLSIFIKMISDYKSDIDLAITTNGFLLK
                     DFAKDLKNAGLKRLNISLDTLDHKKAKTLAQKDVLDSVLSGIDEALNLDLKVKLNTVA
                     LKNLNDDELISLLEFAKSKKAQIRFIEFMENTHAYGKLQGLKRDEIIQILSQKYQIQL
                     IKKDEKAPVSIYKADDYEFGIIDPHSHEFCDSCNRIRLSAEGLLIPCLYFDEALSIKE
                     AVRKGDIKAAVEILQEVLRNKPEKNKWSVVDNETSSRAFYQTGG"
     gene            complement(10517..11032)
                     /locus_tag="ACJFD7_001055"
     CDS             complement(10517..11032)
                     /locus_tag="ACJFD7_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859875.1"
                     /translation="MSDDVLYLVFIIVLLIAMLAYMNIKERENNAKIAKLQNVIEDIT
                     KELHYFRKELGVKDDSEEDEDYKTSLLKEEIMIELDKQISSKITPVLRTLKTMEHIIE
                     DFQNEQQNRLLNLEQKAQSMAKLTPNYDTEEQKIENLFKEGKSIEQIAKDLRIGTGNV
                     ELVLKFKKLIK"
     gene            complement(11029..11526)
                     /locus_tag="ACJFD7_001056"
     CDS             complement(11029..11526)
                     /locus_tag="ACJFD7_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859876.1"
                     /translation="MELALFKAGFEAHLECCEIENNRFLGEYLKLGAISQILKWKKLA
                     LRIDFDEGEKIIFDLLLSLKEDILRLENSLDKNKELIPLKQKGVIESLNFEYLNFLDT
                     ILEEDKEYYLRFDLNNQKIAIFIKAQSQTLAKIIKIKPEDKMAFDAFVVEIQRNMIRN
                     KKGQE"
     gene            complement(11517..12401)
                     /gene="mqnP"
                     /locus_tag="ACJFD7_001057"
     CDS             complement(11517..12401)
                     /gene="mqnP"
                     /locus_tag="ACJFD7_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis prenyltransferase MqnP"
                     /protein_id="HGG0859877.1"
                     /translation="MNTFWIKFKDILELVVFKHSIFALPFLFSSMIVASKLANDTAWF
                     GFKALILGIICAVSARNFAMATNRLMDEDIDKDNPRCANRPNVSGKIGRKSVWIFIII
                     NALIFISCSYFINTLAFYLSFPVLLVLAIYSAFKRFSSLAHLVLGFCLGLAPIAGSVI
                     IMGEIHIYSVILCLGVTFWTAGFDLLYSLQDMEYDKKIGLHSIPAKFGSKATLFISAF
                     CHILAVLFWLLFVWEVWGVALGKIALIGVIISGIILALEHKIVHKNFTHIDRAFFTLN
                     GYLSIIFFIFIWIDLLWN"
     gene            12472..13341
                     /gene="miaA"
                     /locus_tag="ACJFD7_001058"
     CDS             12472..13341
                     /gene="miaA"
                     /locus_tag="ACJFD7_001058"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0052381 - tRNA dimethylallyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HGG0859878.1"
                     /translation="MFFEIALIGTTASGKTYIANTLAREFNAVVLSLDSLCVYKEINI
                     ASAKPSQDDLASIKYFGVNLLSVNEHFNVELFIREYQKAKEFALARNLPLIIVGGTGF
                     YLKTMIDGLSEKTLESKSSLNNDEIYALLLNIDPNYKIEKNDTYRLKKWLGIYEQTRE
                     IPSEFLKRTQKTGVLKDIEIYELAWDKEILKKRIKTRTKEMLDNGLLDEAKILFSKFD
                     HKLKALNSIGLKECKEYLDGEISFKELENLITIHTTQLAKRQRTFNKKFQSKALEFDK
                     ALATLRMKFSIEK"
     gene            complement(13327..13890)
                     /locus_tag="ACJFD7_001059"
     CDS             complement(13327..13890)
                     /locus_tag="ACJFD7_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HGG0859879.1"
                     /translation="MDFYSLIFLSCALGMDAFAVSLCKGFSVKKLHLKHYLIVGIYFG
                     GFQALMPTIGYFIGITFASFIASIDHWIAFILLSLIGLKMIKESLENENCDSNANQFG
                     FKTMLALAIATSIDALAVGVSFAFLNVNLLLAIFLIGIITFILCIIALKTGNKFGIYL
                     KNKAELLGGLVLIILGVKILIEHLFFD"
BASE COUNT         4750 a         2241 c         1734 g         5213 t
ORIGIN      
        1 agttatacta gcctttagtt tatagtaaag agtttaattt atcgctaatt gcttgtttag
       61 attgtgcacc aactagttga tctacaactt caccattttt aaagaaaata agcgtaggaa
      121 tagagcgaac accaaattca gctgctaaat caccttgttc atctgtattt actttgcaaa
      181 ttttagcttt accatcgaag tcatttgcaa gttcatcaat aactggagca agcattctac
      241 aaggtccaca ccatggagcc caaaaatcaa ctaaagctac accttctttt gcttgagcaa
      301 aattatcact tgttaattca atatattttc ccataatttt tcctttcttt aatttttgtc
      361 taattgtatt ttattttttt aaatatcagc ttaaaaactt atattttcgc aaaattgtat
      421 cacatcattt ttaatgcaaa tcagatcaat ctgaaaatcc gatgaaattc catttttaag
      481 atgataaaat tctatagttt ttaaaatttt ttcaagtttt tttctatcca aacgctcgga
      541 aacttcataa tcatcttgag taaatttaac ctctataaaa tgtaaaattt catctttttt
      601 ggctattata tcgatttctc caaatttaga atagaaattt ctttttaaaa tttcaaagcc
      661 ctgttttttt aaaaatttac aagccttatc ttcacctaaa attccatcta aataagcttt
      721 taaacccatt attctatacg catcataaaa ggtttggttt ttataaaatc ttgtttgcgt
      781 aaaatttcaa gcaaattttg tatgcttttt tcataagtta aatgcgtagt aaaaaacaaa
      841 gtactgtaat tttcatcatt ttttttaggt ttttgtaaga aactatcgat agaaatatta
      901 ttttcactca tcaattgtgt gattttagat aaaaccccta ttttatcttc aactttcacc
      961 cttaaataat attttgtata aatttcatct ttgcttaaaa gctcgtattc taaagtgttc
     1021 acaaaaccaa gcattggtgc ttttacctga tctcttgcta tatccataag atctgaaatc
     1081 acagcacttg cagtggcctc tcctcctgct cctgctccat aatacaaact ttcacccaac
     1141 aaatctccat taatgcttat agcattcatc actccatcaa cttttgcaag cattttttct
     1201 ttatctatca tagtaggatg cacccttaat tctactttat tttcacgcac cttagctata
     1261 cctaaaagtt ttatggtaaa ttcaaactca ttagcaaaat acatatcttc aggtgcaatt
     1321 tcactaatac cctcgatcaa aatatcttca ggtttagctt taagattata agcgatactt
     1381 gataaaacaa gcagtttatg tgctgcatct tgcccttcta tgtcaaaagt tggatcagcc
     1441 tctgcataac ctaaattttg agctatttgc aaagcttgtt taaaactcat atttttttga
     1501 ctcatagaac ttaaaatata attactcgta ccatttaaaa tcccttttat agccaaaata
     1561 ttatttgcac ttaaaccttc ttttaaaacc ttgataatag gaattcctcc agccacactt
     1621 gcttcataac caaaagctaa atttttagcc aaattttcaa gttcataacg atgataagca
     1681 agcatagctt tatttgcagt aacaacagct tttttctttt ttaaaatttc actcactatt
     1741 ttaaaagctt catccacccc acccattaat tctacaaaaa catctacatc agcatttaaa
     1801 atttctgcaa cgctatgagt aattggaatt aaagcatttt ttttaggact tctagcaaga
     1861 gcgatcacag gagttatgct ttgcccacat cttgcacgaa taagtttatc attttctaaa
     1921 agaaatttaa ccaccgcact tccaacagtg ccataaccaa gaatcgctac tttcataact
     1981 tactctttta aatatttttt gatattacgt gcagcttggc gtatgcgatt ttcattttca
     2041 attaaagcaa ttcttacata ctcatcacct gcttcgccaa aacctacccc aggacttact
     2101 gcaacactag cacgctgtaa aagttgcttt gaaaattcta aactttttaa atgtcttttg
     2161 ctttcaggga gttttgccca aacaaacata cttgctcttg gtttttgaag tttccagcct
     2221 gcattttcaa aagcttcaag taaaatgtgc attcttttat cataagttgc acggatttca
     2281 tctacacaag tttgatctcc atctaaagct atggtagctg ctacttgaat aggtgtgtac
     2341 ataccataat caaaccaaga ttttattttt ttaagcgcgc tgactaagcg tttatttcct
     2401 actacaaaac ccacgcgcca gcctgccata ttgtaagatt ttgaaagagt gtaagtttct
     2461 accgctacat cttttgcgcc ttcaatttcc aaaatagaag gagttttata gtcatcataa
     2521 gttaaatctg cataagcaat atctgaaata atataaaatc tttctttttt tgccgttgct
     2581 atcaatcttt cataaaaact tttctcacaa gttactgttg ttggattatg cgggaaatta
     2641 acaacgacat attttggacg cgggatgctt tcatttaaag ttttatgtaa attttcaaaa
     2701 aattgatttt catcaagctc aaatttttca ttataagcta aaggcatttt tgctacatta
     2761 cctcctgcta taataaaagc ttgagtatgt ataggataag caggagttgg cacaatagca
     2821 acatctccag gatttataat cgctcttgca agatttacaa aaccctcttt tgaacccata
     2881 gtagctacaa cttcattttc aggatctagg ttgacattat attttctttt ataccaatta
     2941 caaattgcta agcgaagttt ataaatcccc atggatgtag aatatcccga ggttttatct
     3001 ttgttagcac tttcacaaag tttatctata atgtgttgtg gagttttacc atcgggattt
     3061 cccattgaaa agtcgatgat atcctctcca gcacgtcttg ctgccatttt tatcgcattt
     3121 acttctgcga aaacataatt tggaagtctt tctatggtat taaaacggat ttcatcaaac
     3181 atttcttaat cctttatttt ttaagtgtga tttttaaacc cctgcgtata ttatctaaac
     3241 tatacatatc gcttacaata gcatatatag caccatttgg aataagttct gaaaaatgat
     3301 tatttttatt ttcgcttttt actgctttaa ttagattcag atttttatct aaaaagaaga
     3361 ttttaggaaa ccaattgtct aaatcatttg catcaataat caaatttgta gcatttttta
     3421 aatcaagcac atagtcttta aggggttttt ctaatgattt tggagtattt aaattaacat
     3481 ttgtattggt ttttaataca gcattggaaa aatttaaatc atattcatag tcatatgccc
     3541 caatgcgctt aatattatct atatagacag aattttcttt taagagattg taaagcgttc
     3601 caggatctaa aacatattga gattctactt gtatggtata gtcaatattt ccttctctta
     3661 aaatcaaatc tgtagggata aaatatatat atccggcatc tgttaaaaca tcggataaaa
     3721 ttttaaaaaa cataacttca tcagcttttg ctttaaaatt tagttttaga ctttgaggat
     3781 ttgatagtgt taaagcaatt aaagaattgg tttttaatat ttgagatatt tttgcaatat
     3841 cacaatttcc attattatct atgtaagaat tatttgagaa taataattct agttgagaat
     3901 ttttactagg attgtttact aaattttttg ctaattcaag acttgagatt gcaaaagata
     3961 tattaaccca aagagtaaga ataataattt tttttaccat tctttacctt tatttaattt
     4021 tacaaattca gcagctgaaa tacttgtaat ttttccatct ttaatcaaga aacgttttga
     4081 aattcctaca ggaaattttt gttctttatt ttcttgatca aacattgtta aagctgcagc
     4141 ccctgttaaa attaactgat ctttatctaa agaaatatta aaatcttttt ctttaacaaa
     4201 gcttgttttt ttaaggcttt ttaaatctat caaacctatc caaatcttgg tagaggtttt
     4261 aaaatgtgct tcttttaaag aatcagtttt tggtgtattt gtgtcttctt ggatttgggt
     4321 atttttttct tcatcgagta gggttgtgtt attttcactg atattatttt ctatgcttat
     4381 gtttttatca ttttcttgta atgagatgtt ttggcttggt aaaacgctct ctgtttgatt
     4441 tgtttcttgt gctttattgt tgtctataac aacaacattg tttccaccta aagattttaa
     4501 attttcttgt gcttgtccta tgatatctat aactgttgca ctagtattat tttgttcatc
     4561 tttgaaaaaa gttctaagtg tatcaaaata ataaattcca cttcctataa tcactaaaac
     4621 aataagaaca atcaaaaaag gccaagtgtt aaaggatttt tgactataag catctagttt
     4681 tggggttatc atttttgatt ttgtttgtgg agtaggattg ttttcgttaa gataagcttc
     4741 atactcttcg ttaaaatcac taaagtcgag ttcgtattct ctgctcaaaa ttttaacaaa
     4801 acctttaaca ttaaaacgac ttaaaacagc aaaattcttt tctactaaag cttcaagaaa
     4861 atcaagttca atttgcgttt ttgctgcaac ttcttttaaa tttaattctt gtattttttt
     4921 ccaattaagc atttaacatc ctatcacaaa gtattgcaaa agcagcgctg acattaagac
     4981 tatcaaaatt atttttcatc gcaatgccca cacattcatc gcattttttt ataattttag
     5041 agcttaaacc aaaaccctca ctacccaaaa ctaaaacttt tttaccattg cttattttta
     5101 cactgtgaat ttcttttccc gagccatcac tcgcataaaa ataaaaacct acttgtttta
     5161 gttcatttat tacacttaaa gcatcgttgc ttatcacaat aggtaaatca agagccgctc
     5221 cgctgcttgt gcgaattact ccttccatgg ctaatttttc accaataaaa attaaagccc
     5281 caacccctaa agcataagct gtacgcgtga tagcccctat atttcctaca tcactaattc
     5341 cataaagcat aacaataaaa tcattttttt tgatctcatt taaatttgca aaagaacttt
     5401 ctttaatatc tagcaaaaaa ccttgatgat ttccaccttt cgcataagct tgagcagttt
     5461 taaaatcaag ttttttgatt ttaaaaccag attttgcgat tttggaaaaa gtaattttat
     5521 cacattcttt tgctaaataa agctcattga tacagtcttt atgatattct aaaatataaa
     5581 aaaatatttg cttcccataa actatcatat taaaatttta cctaatcttg acttaaaagc
     5641 agtttttgat aaatttcttt tgcatttttt ccattgatct ttgataataa ttttgctttt
     5701 gcttttaaag acagctctaa atccataata tctttttcac aaagagtatt ttgcaaaaaa
     5761 ttttgctctt ttgattgcag tactacaacc cattcaccgt ttaaattaga cttttttaaa
     5821 atttcagaaa gctctttagc attgccttta aatttttttt caaatttttt actgatttct
     5881 ttaatcaaaa aaatttctct ttggctgtct agaatcataa tctgttctac taaagataaa
     5941 atacgcttgg gggattcgta aataatactt ggataaggaa agtttaaaat tttttctata
     6001 tctttttgtc tttctttgcc tttatttgct aaaaaaccaa taaagataaa ttctttttga
     6061 caaaatgctg agcttacaag agcaactaag gctgcatttg cacctggtaa aatttcatag
     6121 gtgatattat tttcttgtgc aaattctacc aaagccttgc caggatcact aatccctggc
     6181 attcctgcat cgcttaaata agctacattt ttttcaaata tctttaaatc aatacttgct
     6241 aaaacttctt tttcattatg ggagtgtaag gctataaatt tagaaatatg tatatcagtg
     6301 tgaaatttgg tatttaataa cgaaatcaaa gacttactta ttcttgtatc ttcgcaaaac
     6361 acaagatcgc aagtctttaa aagttctaag gctctaaaag aaatatcgct taaatttcct
     6421 atgggagtag gaataaaata aagcataatt attgcattgc gtattttttc ttaaatttct
     6481 ctacacgacc tgcagcatct acaatttttt cactgcctgt aaaaaaagga tggcaatttg
     6541 aacaaatatc tactcttaat tctgctttgt ttgactttgt tgtaaaagta tttccacaag
     6601 cacaacttac tttgcattct acatattctg ggtgaatttc ttttttcatt agttttcctt
     6661 aaaaattaaa acaataagcc gtgattataa attatttaac ataaaaaaga gattaattta
     6721 agaaaagtta aagcaaaatt tttgaagcta tagctataat agctgtttga ctttttagaa
     6781 tattagagct tttaagagag attttccggt taaacaataa tctctcatca ttgttaaatc
     6841 caccttcagg acctataaaa tataattctt tttcatcgaa atgactttgt tgttctcctt
     6901 gaaaatcaac cataattgca tttggaaatt tttgaacaaa ttcttgagtg ctttggtgga
     6961 taattaaatc cattttagta tttctaccgc attgttcaca agaagaaata atgatttttt
     7021 caaatctttc taaatcgatt ttaaaatttc tttgtgaaaa atttgtaaaa accaaatgta
     7081 acttttttac tccaagttca tttaagaaag gtagagtttt ttctaaaatt ttaatatcta
     7141 taatggctaa ggctaagttt aattcacttt gttttatatt ttgtgatttt ttgtttaaaa
     7201 attttaaagt gcaagaattt cttgttaaat ttgtgattgt atagttgtaa agaaaattat
     7261 cttgtaaatt tctaagattt agctccgaat tttcctttac tcttcttact tttaaatggt
     7321 taaagttttc accttgaagt tgtataaact cttctccagc ttgcttgtta tacaaaaatt
     7381 gcattttata gatatctttc tattaaaaaa ggcaaaaaca ataaaaaaat ttcaaaaggt
     7441 aaaatcaaac aactaatcca tctaaaagtg gcatattttc taaatcttct tgctttttta
     7501 aaacaaacaa agtgaaaaat tgctaaggca aaaattaaga tccaagaaaa aatcattacc
     7561 cagatattga cattcatttg aaattgtttc attgctgata acaaacaacc tgtaaaaata
     7621 atcaaagcta aaaataaata ataaattggt aaaaataatc gtattctgcg aataaaaatg
     7681 aattcggttt taaaatttcc ttgtgttagt ataagataaa aaagcattaa aaaaccgctc
     7741 gcataaagac tataaagatg taaagctaaa aagaattcgt aactttgatc cattattttc
     7801 ctttgtttat aaaatcagct aaattttgaa tttgttcatc acttaaaaaa ctatggtttt
     7861 tatcttttat cgtttttatt ttttgtataa aaattttatt gctcaaggtt ttaatggccg
     7921 tgctgttttt aggttttaat tccccttttt ctccatgaca agtggcgcat ttttgtttat
     7981 ataaagagtt gataatacta ggattggctt catgttcatc atctgaactt tgtgcttcat
     8041 catctacagg taaaggcagg ttggagtcgc ttaattctgt tttttcatcg ttttgttcta
     8101 tttggactac ttcttgatct gtattttgag tcttggaaac atttttttca tcattagaac
     8161 aggcagataa aactaataaa aaaaaactta aggcaattaa aattttagct ttttgcatta
     8221 aatctccttt ggatttataa aaatttcttc attttttaat ttgttataaa aatctatatc
     8281 attccattct actttaatgc cattggaaaa ttctatgtct tgaagtgaaa tttttggcat
     8341 taactcacta taggcatctt ctctaaaacc ttgtgcatag cctgttcttg tttcatgaac
     8401 aatgatgctt tgtaaagtca ctccttgttc tccatttacc attttcgttt gttttaataa
     8461 agcatctata agtatgaaaa atacacgaca aaaattttca gcacttacat taacaggcag
     8521 gcaaatccaa cgacttgaat attttttcat ttcttctaaa tattttgcgt catcatattt
     8581 aaaaagagtt atagcatgat caaaactatc aataatttgg cgtatatagg tttttaaaag
     8641 tccaaaatca tagaccattc cagcattatc taaatatttg ctttcaagta aaacttcaac
     8701 tttgtaagaa tgtccatgaa tgctactttt gcaacgctta gaagaacaaa atctaacaat
     8761 gtgtgcgttt tcaaattcaa ataattttct tataatcata caccctcttt atcgttccaa
     8821 agacgaatat gaattctatc agaataatta taaccattct taatacaaaa ttcagcaatt
     8881 ttttgagcat tttttttaag gttttgctca ttttcaccca taggcataca aaaaatttga
     8941 tttggagctt cttttagaat ttcattgatt tctaaaaatg aattatcaag ggtattggca
     9001 tctaaaacaa atttataaaa actatctttt gcgtaatttt taaatgcttt taaagcttta
     9061 aaatttaatc gtttatcttt ttttatccca ctattttgga gtttaacgct taaagcaaaa
     9121 atacattctt tgtaaaaagg atatctatca aaatcaattt ctatacttcc attgctttca
     9181 aagtgtattt caaatttatt ttttaataac atttggataa attttataaa ttcaggattt
     9241 tcataatgga ttaatggctc tccacctgtg ataacaacta taggatcaaa gtcttgtttt
     9301 aattttatca ctctttttaa aagttcatta gcatttaaag tttcataact ttctttaaaa
     9361 tcttttgtga aaacagctct tatcgtgtca catccaatga gagttttatc gttttttgat
     9421 atttttacat taaaacctaa acagttgaaa ttgcaaccag caaaacgcat aaaaatagct
     9481 aattttccat tatatttgcc ttctccttga atgcttaaga aactttcaac aagttgcaaa
     9541 attaacctcc agtttgataa aaagcacgag atgaggtttc attatcaaca acactccatt
     9601 tatttttttc tggtttattt cttaatactt cttgtaatat ttctacagcg gctttaatat
     9661 caccttttcg aaccgcttct tttatgctta atgcttcatc aaaataaagg caaggtatta
     9721 acaagccttc agcacttaag cgtatgcgat tgcaagaatc gcaaaattca tggctatgag
     9781 gatctataat tccaaattca taatcatctg ccttgtaaat actcacaggt gctttttcat
     9841 ctttttttat aagttgaatt tgatattttt gactcaaaat ttgtataatt tcatctcttt
     9901 ttaatccttg taatttacca taagcatgag tattttccat aaattctata aagcgaattt
     9961 gagctttttt tgattttgca aattccaaaa gagatatcag ttcatcatcg tttaaatttt
    10021 taagagctac agtattaagt tttactttca aatctagatt taaagcttca tcaattccag
    10081 ataaaacact atctaataca tctttttgcg caagagtttt tgcttttttg tgatctaggg
    10141 tatcaagtga aatattaagt cgtttaagtc cagcattttt taggtcttta gcaaagtctt
    10201 ttagtaaaaa tccatttgta gttatagcaa ggtcaatatc gcttttataa tcgctaatca
    10261 tttttataaa aatacttaaa tcttttctta ataaaggttc tccacctgtt atacggattt
    10321 tttcaattcc ttcgtctata gctgctttaa caaataaaaa aagttcttcg aagcttaata
    10381 aattttcttt tggctgataa tcgaaaggaa tttttggcat acaataaagg cagcgaaagt
    10441 tacatctttg tgtaactgaa attctaagat aatttatctt tctaccgaat tgatctataa
    10501 gcatttattt tccattctat tttattaatt tcttaaattt taagacaagt tctacatttc
    10561 cagtgccaat gcgtaaatct ttagcgattt gttctatgct ttttccttct ttgaaaagat
    10621 tttctatttt ttgttcttct gtatcgtaat ttggcgtaag tttagccatg ctttgtgctt
    10681 tttgttctaa atttaaaaga cgattttgtt gttcattttg aaaatcttct atgatatgtt
    10741 ccatagtttt tagtgttctt aaaacaggag tgatttttga actgatttgt ttatcaagtt
    10801 caatcataat ttcttctttt aaaagagagg ttttatagtc ttcatcctct tcgctatcat
    10861 ctttaactcc taattcttta cgaaaataat gaagttcttt ggtaatatct tctatcacat
    10921 tttgaagttt tgctattttt gcattatttt ctctttcttt gatattcatg taggctagca
    10981 ttgcaattaa aagcacaatt ataaaaacta aataaagtac atcatcactc attcttggcc
    11041 tttcttattt cttatcatat ttctttggat ttcaacaaca aaagcatcaa aagccatttt
    11101 gtcttcaggc ttaattttga taatttttgc caatgtttga ctttgagctt tgataaaaat
    11161 agctattttt tgattattta aatcaaatct taaataatat tctttatctt cttctaaaat
    11221 agtatccaaa aaatttagat actcaaaatt taaagattct attacccctt tttgcttaag
    11281 tggtataagt tctttatttt tatctaaaga attttcaagc cttaaaatat cttcttttag
    11341 acttaaaaga agatcaaaaa taattttttc accctcgtca aaatcaatgc gtaaagcaag
    11401 ttttttccat tttaaaattt gagaaattgc tccaagtttt aggtattctc caagaaaacg
    11461 gttattttct atttcacaac attctaaatg agcttcaaat cctgctttaa aaagtgctaa
    11521 ttccataata aatcaatcca aataaaaata aaaaagataa tacttaaata accatttaga
    11581 gtaaaaaatg ctctatcaat atgagtaaaa ttcttgtgaa caattttatg ttccaaggct
    11641 aaaataatac cgcttataat taccccaata agtgctattt ttccaagtgc tacaccccaa
    11701 acttcccaca caaaaagaag ccaaaataat accgctaaaa tatggcaaaa agctgatata
    11761 aataaagtag cctttgaacc aaatttagca ggaatagagt gaagtcctat ttttttatca
    11821 tactccatat cttgtaaaga ataaagcaga tcaaacccag ctgtccaaaa agttacacct
    11881 aaacataaaa taacgctata aatgtgaatt tcacccataa ttataacact tcctgcaata
    11941 ggcgcaagtc ctaaacaaaa tcctaaaact aaatgtgcta aagaactaaa gcgcttaaaa
    12001 gctgaataaa tagccaatac caaaagcaca ggaaaagaca aataaaaggc caaggtatta
    12061 ataaaataag aacatgatat aaaaataagt gcattaataa tgataaaaat ccatacgctt
    12121 tttctaccta tttttccact gacattaggg cgatttgcac aacgaggatt atccttatct
    12181 atatcttcat ccattaaacg atttgtagcc atggcaaaat ttcttgcact taccgcacaa
    12241 ataatgccta aaatcaacgc cttaaaacca aaccaagcag tgtcatttgc aagttttgat
    12301 gctacaatca tagaggaaaa taaaaaaggc aaagcaaaaa tagaatgctt aaatactaca
    12361 agttctaaaa tatctttaaa ttttatccag aatgtgttca tttttctact ttaaaatatt
    12421 ttttgctatg attttactaa aatttttata aattttagga taaatattaa aatgtttttt
    12481 gaaatagcat taataggaac aaccgcgagt ggaaaaacat acatagccaa tactttagca
    12541 agagaattta atgctgttgt tttaagtctt gatagtcttt gtgtttataa agagattaat
    12601 atagcaagtg ccaagccttc acaagatgat cttgcgagta taaaatactt tggggtaaat
    12661 ttattgagcg tgaatgaaca ttttaatgtt gagttattca taagagaata tcaaaaagca
    12721 aaagaatttg ctttagctag aaatttacct ctaattatag taggtggaac tggattttat
    12781 ttaaaaacta tgatagatgg tttaagtgaa aaaaccttag agtcaaagag ttctttaaat
    12841 aacgatgaaa tttatgctct tttattaaat attgatccaa actataaaat agaaaaaaat
    12901 gatacttata gattaaaaaa atggctgggt atttatgaac aaacaagaga aattcctagt
    12961 gaatttttaa aaagaacaca aaaaactggg gtgcttaaag atatagaaat ttatgagctt
    13021 gcgtgggata aagaaatttt aaaaaaacgt attaaaacta gaacaaaaga aatgcttgat
    13081 aatggacttt tagatgaagc aaaaattctt ttttctaaat ttgatcataa acttaaagca
    13141 ttaaattcta taggtttgaa agagtgtaaa gaatatttag atggagaaat ttcctttaaa
    13201 gagcttgaaa atttaatcac gatacatact acacaacttg ccaaaagaca aagaactttt
    13261 aataaaaaat ttcaaagtaa agccttggaa tttgataaag ctttagctac tttaagaatg
    13321 aaattttcaa tcgaaaaata aatgttctat tagaattttt actcctagta taattaaaac
    13381 caatccgcct aaaagttcag ctttattttt aagataaatt ccaaatttat tccctgtttt
    13441 tagagcaatg atacataaaa tgaaggtgat aatacctatt aaaaatatag ctaataataa
    13501 atttacattt aaaaatgcaa aactcacacc aactgctagt gcatcgatac tcgtagcaat
    13561 tgctaaagct agcatggttt taaagccaaa ttgattggca ttactatcgc aattttcatt
    13621 ttccaatgac tctttgatca tttttaatcc tattaaagaa agtaaaataa aagctatcca
    13681 atgatcaata ctcgcaataa aagatgcaaa agttatgcct ataaaataac caatagttgg
    13741 catcaaagct tgaaatccac caaaataaat tccaacaata agataatgtt ttaaatgtag
    13801 ttttttaaca ctaaaacctt tgcatagtga tacagcaaaa gcatccattc ctaaagcaca
    13861 ggataaaaaa ataagactat aaaaatccat aataaatcct aaaattttat aaaaaattga
    13921 agatgaaatt ataatcaa
//
LOCUS       DBBXPZ010000043        13736 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.045, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000043 DBBXPZ010000000
VERSION     DBBXPZ010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13736)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13736)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13736
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.045"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..331)
                     /locus_tag="ACJFD7_001060"
     CDS             complement(<1..331)
                     /locus_tag="ACJFD7_001060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859880.1"
                     /translation="MTAYIHIGTPKTGTTTIQHFLANNRNELMKRNVCYLNYKGVLDH
                     WFIPKLLNILWEKSNKNIDLFYQNKSIFLNQEQEIQTIKEEIKKLNSNQIILLSCEGI
                     YQLCSSFE"
     gene            complement(347..1450)
                     /gene="prfB"
                     /locus_tag="ACJFD7_001061"
     CDS             complement(347..1450)
                     /gene="prfB"
                     /locus_tag="ACJFD7_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002923668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016149 - translation release factor
                     activity, codon specific [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HGG0859881.1"
                     /translation="MDNYEFSELLKTLKNKVGNIASIIKPENIQTRLKEIEELENSPS
                     FWSDVKQAGVIGKEKTKITNLLKNYENAFNALNDASELFDLANSENDTETLEALFNDA
                     PKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWASILYRMYLRFCEREGF
                     KVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSS
                     VMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
                     RSQHKNKATAFKMLKSRLYELELMKQQDSANTGEKSEIGWGYQIRSYVLFPYQQVKDN
                     RSGEAFSQVDNILDGDIKKMIEGVLIALKAKNI"
     gene            1524..2843
                     /gene="rimO"
                     /locus_tag="ACJFD7_001062"
     CDS             1524..2843
                     /gene="rimO"
                     /locus_tag="ACJFD7_001062"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008172 - S-methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0018339 -
                     peptidyl-L-beta-methylthioaspartic acid biosynthetic
                     process from peptidyl-aspartic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HGG0859882.1"
                     /translation="MSKLYLMSLGCNKNLVDSEIMLGRLSAYELCDEPSKADVLIVNT
                     CGFIDSAKKESINAILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDY
                     ERVDEMILKKTNLFSNSTYLQSENSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG
                     KLKSREISSIIAELKDLVARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIKGI
                     RAARILYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEM
                     LNLMKSAPNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFD
                     MEQVSFKVINKRLKIIEKIVNEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRW
                     DREIDGEILINESECGNLEMGQIYECEILQNLDKKLLAKALRKVDAN"
     gene            2833..3798
                     /gene="tilS"
                     /locus_tag="ACJFD7_001063"
     CDS             2833..3798
                     /gene="tilS"
                     /locus_tag="ACJFD7_001063"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HGG0859883.1"
                     /translation="MQIKDEILALLKKGKNLLAFSYGSDSSALFYLLMQEKIDFDLVM
                     INYKTRKNSDLEELKAKELALKFHKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQ
                     DYDHLILAHHLNDQFEWFLMQLSRGAGLAEILGMQECEKRQNYTLLRPLLFISKDEIS
                     SFLKEKDIFYFHDESNENEKYFRNYIRKNFSNAFVSKFHQGLKRSFSYLDEDRKKLYD
                     FENIKEIQGLLICPKNESLIARAVKMKGLLLSTAQRKELLKGDCVLGGKIALVYKNEQ
                     AIVFEYETCQKLPKNFKEECRIAKIPRLLRAYLYNHKIDISSLSF"
     gene            complement(3781..4494)
                     /locus_tag="ACJFD7_001064"
     CDS             complement(3781..4494)
                     /locus_tag="ACJFD7_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EI24 domain-containing protein"
                     /protein_id="HGG0859884.1"
                     /translation="MDILKLAIKDFLSLKFLKFALIPLIFSLVLMLFLGVLGFSALLD
                     YFNSLFSVGEDSFWAWFYALHFVQILITIISFLFSGFIVVFASVFLALFITSFLTPFI
                     AKEINQKYYHYDNTNEVSTLKTIFEIFKIFIKFIGILLLCTLALFLPFINIFVYYLAF
                     YYLFHKLLMIDVTSTILDKESFKNFHSDFSPLEFKFSTLCFYLLSSVPLLGLFLQVFF
                     VIFLTHLGYQRILKLKAKA"
     gene            complement(4496..5185)
                     /gene="dut"
                     /locus_tag="ACJFD7_001065"
     CDS             complement(4496..5185)
                     /gene="dut"
                     /locus_tag="ACJFD7_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HGG0859885.1"
                     /translation="MTNIEILENMLKLQQKLNDETNGLNWENGYTKEGKLISWRRCIY
                     MECAELIDSFAWKHWKNISNPTNWENVRIEIVDIWHFILSLLLEEYRDKNGKDLKAIA
                     TEVNAVSVFQDFCKEEEHPNESDIYGILNDIELIIHKCSGFGFNLEELLSIYFTLAIK
                     CGLNLEILYKTYIGKNVLNIFRQNHGYKNGSYKKTWNGKEDNEVLAQILEQELDFDTI
                     YKKLEEYYKKA"
     gene            complement(5221..5784)
                     /gene="ciaI"
                     /locus_tag="ACJFD7_001066"
     CDS             complement(5221..5784)
                     /gene="ciaI"
                     /locus_tag="ACJFD7_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular survival protein CiaI"
                     /protein_id="HGG0859886.1"
                     /translation="MQIDASKNQSFSMDYTTKSGKHLALSMYDNQSISYANNEEGKTL
                     NLKRQYGFSFTFEGSKLTQNDLDEIKNAMKEVEPMIKDFLANSKVGELKPKEIIESAM
                     QMANVLPTPNDKNHQNAIMNNFTNKLSDLLKQNQTNDKDINTSMLEDSKKLLDEVLEQ
                     MKKQLEKQQEKAKENQDKTDDSLNLYA"
     gene            5859..6266
                     /locus_tag="ACJFD7_001067"
     CDS             5859..6266
                     /locus_tag="ACJFD7_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859887.1"
                     /translation="MDERILEFIKNEQLLSWAVIDEKGVYTASAFYAFDEKNLAFIIA
                     SHENTKHIRLASENSSIALNIAKESKIAFLKGVQAKAEFKMASKEQMKIYFSKFPFAK
                     LDKSAKIYALELFWLKFTNNALGLSKKLEFCKK"
     gene            6338..7120
                     /gene="kpsM"
                     /locus_tag="ACJFD7_001068"
     CDS             6338..7120
                     /gene="kpsM"
                     /locus_tag="ACJFD7_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide transporter KpsM"
                     /protein_id="HGG0859888.1"
                     /translation="MLNVIHALFFRELKTRFGKNRYLGYIWVVGEPMSVVLLVTIIGT
                     VIREYHHQVMPEGISIFMFLISGIMPFFMFRSIVTQLMNGIGANLSLFAYKPVKPIHV
                     FIARTLLEFCIYFVIFITVLFFAGWFFRLDVFPVHLLGVLFCIFLLICSAFALGICFA
                     IVWHFVEPLRTLLAYFSIVFYWSSGIIFPTWLTPRPLLDIFYYNPLLHIMELLRFNFF
                     ENYPLQDEYSYFYAIFWILLVLFIGLFIYYYNRQALTAAKKE"
     gene            7117..7779
                     /locus_tag="ACJFD7_001069"
     CDS             7117..7779
                     /locus_tag="ACJFD7_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0859889.1"
                     /translation="MIKLINLTKSYPLFSGGRHYVFKNFTFEFPENCSIGLMGYNGAG
                     KSTLMRLLSGAELPDSGKIITNKKLSWPLGLNGAFQGSLTARDNAKFVARVYGYKGKE
                     LQEKVKFVEDFAEIGKFFDEPMKTYSSGMSARIAFGLSMAFDFDYYLIDEAGAVGDPA
                     FREKSVKLYRERLSKSKVIMVSHNVAEIKEWCDKIIYMKNGQITVYDDVDEGIAVYQG
                     KA"
     gene            7779..8897
                     /locus_tag="ACJFD7_001070"
     CDS             7779..8897
                     /locus_tag="ACJFD7_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HGG0859890.1"
                     /translation="MEENKTLLEKIKDLSIFDSFKIVWFIMIFVVIYYTLIAAPRYVS
                     TMILDVRSTSGESAQTSGILSLLGSTSTASEDLNYLKGYIESSDMLKILDGKIKLKSL
                     YQEQHIDLPFKIWDSSSIESYLKYYQARVKVHTDETTKLLQVEVEGFTPKSAHLIAQT
                     IMQESEKFINEISHKAAREQMAFAENEVQKYKERYQKAQNDLIAFQNKYGVFDPLKQA
                     EAKASLVAQIETNLAQKEAKLLTLQSYMNDAAPEVVALKAEIEAIKKQLLREKSKISA
                     NNSSQKLNDLAAKFQDLTIEATFAQKAYEAALKAYESARIEALRKIKQLVIIQSPDIP
                     ESAKYPERIYDILTAFIVLSLIFGIVKFIKMIIEEHKY"
     gene            8899..10557
                     /locus_tag="ACJFD7_001071"
     CDS             8899..10557
                     /locus_tag="ACJFD7_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HGG0859891.1"
                     /translation="MKKILILLFSCILCFGAVDVSQIISAEDQGSTTTSIDQNLSSNY
                     DIANKENNLTKIHQILVFGAHLFNGNFKNYNQRVYNPDYKIAVGDQISLKIWGAVEFS
                     QVLAVDSQGNIFIPKVGAVNLLGVKNSALVSVIKARVNKIYKSNVFVYADMNAYQNVS
                     VFVTGSVNAPGLYQGLSSDSVIQYLDKAGGINLEYGSFRDIQILRNNSVIKNIDLYDF
                     LLKGQMDLFPFRSGDVILVGNVQNYAFVNGDVQRPFRFELSNDIKTLADLARVSGAKP
                     IVTNAIVKSYGEDHKLDVSAYNKMQFSKVLLRTGDEVEFHPEYVSENITISVNGEHNG
                     LKTLVVGKGTTLEDISKLIKANPQSNMQALQVFRKSVARTQKELINAQLKELETLALT
                     SGSVTAQGAAIRAQQAKTILEFIQRAKQVEPKGQIVIDNPKSYNSVILEDGDTINVPS
                     KNNLIIVQGEVSLPGAFVYDKGKDLRYYINLAGGYGERADTSKVLVIRSNGKAEKYHS
                     GIDMKPGDSVLVLPKVDSENLQIFSMLTQILYQIAIATNVVLNL"
     gene            10567..11514
                     /locus_tag="ACJFD7_001072"
     CDS             10567..11514
                     /locus_tag="ACJFD7_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HGG0859892.1"
                     /translation="MNTLEIAKEVFEKEAQAILDLAKNLDENFNQAVNLMLNTKGRCI
                     VSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTPEDVLITISNSGETEE
                     ILKIIPAIKKRKIPLIVMCGKKNSTLVKQSDIFLNIAVEKEACPLQLAPMSSTTATLV
                     MGDALAAALMKVRNFKPDDFALFHPGGSLGRKLLTKVKDLMVSSNLPIVHPDTEFNDL
                     VDVMTSGKLGLCVVLENEKLVGIITDGDLRRALKTSDKPRFDFRAKEIMSTNPKVVDA
                     DAMASEAEEIMLKHKIKEIIVGKEEKVVGIIQLYAIGNV"
     gene            11514..13142
                     /locus_tag="ACJFD7_001073"
     CDS             11514..13142
                     /locus_tag="ACJFD7_001073"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019260274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HGG0859893.1"
                     /translation="MPLLSVIIPFGLSKERPYIEERVLQKAKFFQSDENIEFIFVEGY
                     SSKDHELKNFIQANHHIYLKDMDQKAFSQGRCRNLGASYAHSNVLLFLDVDCYISLDN
                     FEKILKLIQIKNISQNINALIVLPVVYLNKEANEKLKQYDDKFWDILIQEDLFTAKNT
                     WVKFFAPSSTSSIVINKYQFLRLGGNDENFIGHGYEDFDLFARILKACVSFEKMPANL
                     SYDARNWNFFNFKGFRSWFSLLGYEACFYGIYMYHFYHIEPNQNAYMHNKDKNHRLFY
                     KHLKNIKKHDLKPLQVFKAKGEKVLMLFKDQNYDFKDISVYMGEIIYKNISDFFMDKE
                     LKYELLLDFLQQEKITKIFLDASIKLQFDGIDYCDIFYFQKGILPHSWFFAKKLDLDY
                     KQDLNLSEQKLYQVKEYFLTLKEDEKKVILDFLSQNNDDKYDLYKMLYYLINELYSFE
                     HEGIFYQIIIDKEKMLMAQKHDKSFYPLRSFVYKPYLHELKSIRPFSFLMKILGLEYL
                     GAMISHTKFYRLARKLFFNPKGFFEDLRAKKARN"
     gene            13144..>13736
                     /locus_tag="ACJFD7_001074"
     CDS             13144..>13736
                     /locus_tag="ACJFD7_001074"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family A protein"
                     /protein_id="HGG0859894.1"
                     /translation="MLLKAKYKKNISFFFKSLLISMQNFLKQFKPKKYKAYNKYVIVS
                     AVYNVEKYLDDFFKSIINQRLDFKSNIYLICVDDGSTDNSANIIKKYQKKYPKNIAYL
                     YKENGGQASSRNLGLKYLKENDLNIFWVTFTDPDDFLDRDYFYEVDSFLKKQNNIAMV
                     ATNIIFYREKRKILYKDTHALNFKFKRQKSVYDNIKL"
BASE COUNT         4779 a         1758 c         2364 g         4835 t
ORIGIN      
        1 actcaaagga gctacatagt tggtaaattc cctcacaaga taacaagata atttgatttg
       61 aatttagttt ttttatttct tcctttatag tttgaatttc ttgttcttgg tttaaaaata
      121 ttgatttatt ttgataaaat aaatcaatat ttttatttga tttttcccaa agtatattaa
      181 gtaatttagg aataaaccaa tgatctaata ctcccttata atttaaataa catacatttc
      241 ttttcattaa ttcatttcta ttgttggcta aaaaatgttg aatcgtggta gttccagttt
      301 ttggtgttcc tatgtgtata taagctgtca tttttactcc ttaagattaa atattttttg
      361 cttttaaggc aattaaaacg ccttctatca tttttttgat atccccatca aggatattat
      421 ccacttgaga aaaagcttct ccgctgcgat tgtctttgac ttgctgataa gggaaaagca
      481 cataagaacg gatttgatac ccccaaccta tctcgctttt ttctccagta ttagcactat
      541 cttgttgttt catgagttca agttcataaa ggcgagattt tagcatttta aaagcggtgg
      601 ctttgttttt gtgctgactt ctgtcatttt ggcattgtac gactatgccg gttggaaaat
      661 gcgtgattct cacagccgat tctgttttat tgacatgttg tccgcctgca ccgcttgctc
      721 tgtaataatc tattcttatg tctttttctt cgatttcaat ttctatatca tcatcaagtt
      781 cagggcttac cataacactt gaaaagcttg tatgacggcg tcctgcacta tcaaaaggag
      841 aagttcttac caaacgatgg ataccatttt cagcttttaa ataaccataa gcattttctc
      901 ctttaactaa aaagctcaca tctttaagtc ctgcttcttc gccttcttga aagtctaaag
      961 tttcgacttt aaaaccttct ctttcacaaa atcttaaata cattctataa agtatgcttg
     1021 cccagtcatt actttccgtt ccacctgcac ctgggtgaat ggaaacaatg gcatttttac
     1081 catcattttc cccgcttaaa agcatggaaa tttcaagact tgtgatggta tcttcaagtt
     1141 ttggtgcgtc attaaataaa gcttcaagtg tttctgtatc gttttcgcta ttagccagat
     1201 cgaaaagttc gcttgcgtca tttagagcat taaaagcatt ttcatagttt ttaagtagat
     1261 tggtgatttt agttttttct ttacctatga ctcctgcttg tttaacatca ctccaaaaag
     1321 aaggagaatt ttcaagctct tcgatttctt taagccttgt ttggatattt tcaggcttga
     1381 tgatggaggc tatgttgccg actttgtttt ttaaagtttt taaaagttcg ctaaattcgt
     1441 aattatccat aaaatttctt tgctataatt atatttttaa agtcaaaaat tatatcaaaa
     1501 gaaaacttta atataggaaa aaaatgtcaa aactttatct tatgtcttta ggttgtaata
     1561 aaaatttagt cgatagtgag atcatgctag ggcgccttag cgcttatgaa ctttgcgatg
     1621 aaccaagcaa agctgatgtt ttaatcgtaa atacttgtgg ttttatcgat agtgcaaaaa
     1681 aagaaagtat taatgcgatt ttggatttgc acgaacaaag aaaaaaagat tctcttttgg
     1741 tggttacggg ttgtttgatg cagcgttacc gcgaagaact tatgaaagaa cttcctgagg
     1801 ttgatctttt cacaggtgtg ggtgattatg aaagagtcga tgaaatgata cttaaaaaaa
     1861 caaatttatt ttcaaattcg acttatttgc agagtgaaaa ttctaaacgt attatcacag
     1921 gttcaaattc ccatgctttt ataaaaatcg ccgaaggttg taatcaaaaa tgctcttttt
     1981 gtgccatccc aagttttaaa ggcaagttaa aatctcgcga gataagtagc attatagctg
     2041 agcttaaaga tttggtagct agaggttata aggacttttc ttttattgca caagatacga
     2101 gttcttattt gtttgataag ggtgaaaaag atgggcttat acgcttaatc gatgaggtgg
     2161 aaaaaatcaa aggcataaga gcggctagaa ttttatatct ttatcctacg agtgcgagtg
     2221 aagctttgat caaacgcatt atagcttctg aaatttttgt aaattatttt gatatgcctt
     2281 tacagcacat aagtgataat atgcttaaaa tcatgaagcg tggggcaaat agcacaagac
     2341 ttaaagaaat gctaaattta atgaaaagtg cgccaaatag ctttttacgc acgggcttta
     2401 tcgtagggca tccaggtgaa agtgaggcag attttgaaga gctttgtgag tttgttaaag
     2461 actttggttt tgatagagtg agtgtttttg cgtattctaa ggaagaagat acagccgctt
     2521 ttgatatgga gcaagtgtct tttaaagtga tcaataaaag gcttaaaatc atagaaaaaa
     2581 ttgttaatga agtgatagaa aaaagttttg aaaaagaagt ggggcaaaag cgtttagtag
     2641 tttgcacagg agaaagtagt gagggagagt ttttcatcgc agctaaagat ttaagatggg
     2701 atagagagat tgatggggaa attcttatca atgaaagcga atgtggaaat ttagaaatgg
     2761 ggcaaattta tgaatgtgaa attttacaaa accttgataa aaagctcctt gctaaggctt
     2821 taagaaaagt agatgcaaat taaagatgaa attttagccc ttttaaaaaa gggtaaaaat
     2881 ttactcgctt tttcttatgg aagtgattct agtgcgcttt tttatctttt aatgcaagaa
     2941 aagatcgact ttgatcttgt gatgataaat tacaaaacaa gaaaaaatag tgatttagaa
     3001 gagttaaaag ccaaagaact tgctttaaaa tttcataaaa aaattttcat aaaacacgct
     3061 cctaaatttc aaagtaattt tgaaaaaaaa gccagagatt ttcgctatga tttttttgaa
     3121 aaaatttgtc ttgagcaaga ttatgatcat cttatcttag cccatcattt aaacgatcaa
     3181 tttgaatggt ttttgatgca actttcacga ggagcaggtt tggctgaaat tttaggtatg
     3241 caagagtgtg aaaaacgcca aaattataca cttttacgcc ctttactctt tataagtaaa
     3301 gatgaaattt catctttttt aaaagaaaaa gatatttttt atttccatga tgaaagtaat
     3361 gaaaatgaaa aatattttag aaattatata agaaaaaatt tctctaatgc ctttgtgagt
     3421 aaatttcatc agggtttaaa aagaagtttt tcttatcttg atgaagatag gaaaaaactt
     3481 tatgattttg aaaatatcaa agaaattcaa ggacttctta tttgccctaa aaatgaaagc
     3541 ttgatcgcta gagcggtgaa aatgaaaggt ttgcttttaa gcacggcaca aagaaaagag
     3601 cttttaaagg gcgattgtgt tttaggcggt aaaatagcac ttgtatataa aaacgaacaa
     3661 gctattgttt ttgaatatga aacttgtcaa aaattaccta aaaattttaa agaagagtgt
     3721 agaatagcta aaattccaag acttttaaga gcttatttat ataatcacaa aatcgatatt
     3781 tcaagcctta gcttttagtt ttaaaattct ttgatagcct aaatgtgtga gaaaaatcac
     3841 aaaaaatact tgcaaaaaaa gtcctaaaag tggcactgat gagagtagat aaaaacaaag
     3901 agtgctaaat ttaaactcta aaggcgaaaa atcagaatga aaatttttaa aactttcttt
     3961 gtctaaaatc gtgcttgtaa catcaatcat taaaagtttg tgaaagagat aataaaaagc
     4021 aagataatat acaaaaatat tgataaaagg taaaaataaa gccaaggtgc aaagcaataa
     4081 aatccctata aattttataa atattttaaa aatttcaaag atagttttta aggttgaaac
     4141 ttcgtttgta ttatcataat ggtaatattt ttggttgatt tctttagcga taaaaggagt
     4201 aagaaaagaa gtgataaaaa gggctaaaaa aaccgaagca aaaacaacaa taaaacctga
     4261 aaataaaaaa cttatgatgg tgattaaaat ttgtacaaaa tgaagggcat aaaaccacgc
     4321 ccaaaacgaa tcctctccaa cgctaaataa agaattgaaa taatcaagca aggccgaaaa
     4381 gccaagtact cctaaaaaaa gcatcagtac aaggctaaaa attaaaggaa ttaaggcaaa
     4441 ttttaaaaat ttaagactta aaaaatcttt gattgcaagt tttaaaatat ccaaattatg
     4501 cctttttgta gtattcttct agttttttat aaatagtatc aaaatcaagc tcttgttcta
     4561 aaatttgagc taaaacttca ttgtcttctt tgccattcca agttttttta tagctaccat
     4621 ttttgtaacc atggttttgt ctaaagatat ttaaaacatt tttacctatg taggttttat
     4681 aaagaatttc aagattaagc ccacatttaa tagctaaagt aaaatatatt gaaagtaatt
     4741 cttcaagatt aaatccaaaa ccactgcatt tatggataat aagctctata tcatttaaaa
     4801 tgccataaat atcactctca ttaggatgct cttcttcttt acaaaaatct tgaaacacac
     4861 ttacagcatt aacttctgtg gctatagctt tcaaatcttt tccattttta tcgcgatact
     4921 cttcaagcaa aagacttaaa ataaaatgcc aaatatcgac aatctctata cgcacatttt
     4981 cccaatttgt cggatttgaa atgtttttcc aatgtttcca tgcaaaagag tctataagtt
     5041 ctgcacattc catataaata cagcgtctcc aactgatcag ttttccttct ttggtgtagc
     5101 cattttccca atttaagccg tttgtttcgt cgttaagttt ttgttggagt ttgagcatat
     5161 tttctaaaat ttcgatattt gtcatttaaa actccttgat aatttttaat attatatgat
     5221 ttaagcgtaa agatttaaac tatcatctgt cttatcttga ttttccttgg ctttttcttg
     5281 ttgtttttca agttgttttt tcatttgttc taaaacttca tcaagaagtt ttttgctatc
     5341 ttcaagcata gaagtattga tatctttatc atttgtttga ttttgtttta gcaaatcact
     5401 gagtttattt gtaaaattat tcataatagc attttgatgg tttttatcat ttggagttgg
     5461 tagaacattt gccatttgca tagctgattc gataatttcc tttggcttta actctccaac
     5521 tttagaattt gctaaaaaat ctttgatcat aggttcaact tctttcatag catttttaat
     5581 ctcatcaaga tcattttgcg tgagcttaga gccttcaaaa gtaaagctaa agccatactg
     5641 acgcttaaga ttaagagttt taccttcttc attatttgca taacttatgc tttgattgtc
     5701 atacatagat aaggctaaat gtttgccact ttttgttgta taatccatcg aaaaactttg
     5761 gtttttgcta gcatcaattt gcatttcttc cccttatatt tatagtttaa attaaaaatc
     5821 ggttattttt aaaaatattt tagtataatt tttacaatat ggatgaaaga attttagaat
     5881 ttataaaaaa tgagcagctt ttatcttggg ctgtgattga tgaaaaaggt gtttatacag
     5941 ctagtgcttt ttatgctttt gatgagaaga atttagcttt tattatcgct tctcatgaaa
     6001 atactaagca tataagatta gccagtgaaa attcaagtat agcacttaat atagccaaag
     6061 aaagtaaaat agccttttta aaaggtgtgc aagctaaggc cgagtttaaa atggcaagta
     6121 aggagcaaat gaaaatttat ttttctaaat ttccctttgc taaacttgat aaaagtgcaa
     6181 aaatttatgc cttagagctt ttttggctta aatttactaa caatgcttta ggacttagta
     6241 aaaagcttga gttttgtaaa aaataaattt ttatgatttt gtttaaaaaa atgagttatg
     6301 attatagttt atgtaaattg ttaggtatag aaaataaatg ttaaatgtaa ttcacgcttt
     6361 attttttaga gagttaaaaa ctagatttgg aaaaaatagg tatcttggat atatatgggt
     6421 agttggagag cctatgagtg ttgtactttt ggtgactatt ataggaactg ttattaggga
     6481 atatcatcat caagttatgc ctgaaggaat ttctattttt atgtttttga tttcaggcat
     6541 tatgcctttt tttatgttta gaagtatagt aactcagctt atgaatggaa taggggcaaa
     6601 tttatctttg tttgcctata aacctgtaaa acctatacat gtatttattg ctagaacttt
     6661 actcgagttt tgtatttatt ttgtgatttt tatcactgtg cttttttttg cagggtggtt
     6721 ctttagactc gatgtatttc ctgttcattt acttggagtt ttattttgta tttttttact
     6781 catatgctca gcttttgctt tagggatttg tttcgctatt gtttggcact ttgtagaacc
     6841 tttaagaact ttattagctt attttagtat agtattttat tggagttctg ggattatatt
     6901 tcccacttgg ttaactcctc gtcctttact tgatatattt tattacaatc ctttgcttca
     6961 cataatggag cttttaagat ttaatttttt tgaaaattat cctttgcaag atgaatatag
     7021 ttatttttat gctatatttt ggattttact tgttttattt atagggcttt ttatttacta
     7081 ctataataga caagctctaa cggcggcaaa aaaagaatga taaagctaat taatctaact
     7141 aaatcttatc ctttatttag tggtggaagg cattatgttt ttaaaaattt tacttttgaa
     7201 tttcctgaaa attgtagcat aggtttaatg ggatataatg gcgcaggcaa gtccactctc
     7261 atgagacttt taagcggagc agagcttcct gatagtggca agataattac taataaaaaa
     7321 ttatcttggc ctttgggttt aaatggagct tttcaaggtt ctttaactgc cagagataat
     7381 gctaaatttg tagctagggt gtatggatat aagggtaaag aacttcaaga aaaagtaaaa
     7441 ttcgtagaag attttgctga aataggaaaa ttttttgatg agcctatgaa gacttattct
     7501 tcgggaatga gtgctaggat agcttttgga cttagtatgg cttttgattt tgattattat
     7561 ttgatcgatg aggctggagc tgttggagat cctgctttta gggaaaaaag cgtgaaatta
     7621 tatagagaaa gattaagcaa atcaaaggtg attatggtat ctcataatgt agctgaaatt
     7681 aaagaatggt gtgataaaat aatttatatg aaaaatggac aaattacggt ttatgatgat
     7741 gtagatgaag gaatagctgt atatcaagga aaagcttaat ggaagaaaat aaaactttat
     7801 tagaaaaaat caaagattta agtatatttg attcttttaa aattgtttgg tttataatga
     7861 tttttgttgt gatttattat acgttgattg cagcgccaag atatgtaagc acgatgattt
     7921 tagatgttag atcaacaagt ggagaaagtg ctcaaacaag tggaattttg tctttgcttg
     7981 gtagtacttc tacagcaagc gaagatttaa attatctaaa aggttatata gaatcaagtg
     8041 atatgttaaa aattttagat gggaaaatta aacttaaaag tctttatcaa gaacaacata
     8101 tagatttgcc ttttaaaatt tgggattcaa gttcgataga atcttatctt aaatattacc
     8161 aagcaagagt taaggtgcat acggatgaaa ctactaagct tttgcaggta gaagtagaag
     8221 gttttacacc taaatcagct catttgattg ctcaaactat tatgcaagaa agcgaaaagt
     8281 ttatcaacga aatctctcat aaagcagcta gagaacaaat ggcttttgct gaaaatgaag
     8341 tacaaaaata caaagaacga tatcaaaaag cacaaaatga tttgattgct tttcaaaata
     8401 aatatggggt ttttgatccc ttgaaacaag ctgaagctaa agcaagtttg gttgcgcaaa
     8461 ttgagactaa tttagctcaa aaagaagcta aacttttaac tttacaaagc tatatgaatg
     8521 atgcagcacc tgaagtagta gcacttaaag cagaaattga agcgattaaa aaacagcttt
     8581 taagggaaaa atctaaaatt tcagctaaca attcttctca aaagcttaat gatttggctg
     8641 ctaaatttca agatctaact atagaagcta cttttgcaca aaaagcttat gaagcagctt
     8701 taaaagctta tgaaagtgct agaatagaag cattaagaaa aataaagcaa cttgtcatca
     8761 ttcaaagtcc agatattcca gaaagcgcaa aatatcctga aagaatttat gatattttaa
     8821 cagcatttat tgtattatct ttgatttttg ggattgttaa atttattaaa atgataatag
     8881 aggagcataa gtattaaaat gaaaaaaata ttaattttac tttttagttg tattttatgt
     8941 tttggagctg tggatgtttc acaaatcatt tcagcagagg atcaaggttc tactacaact
     9001 agcatagatc aaaatttaag ctcaaattat gatatagcaa ataaagaaaa taatcttaca
     9061 aaaattcatc aaattttagt atttggcgct catcttttta atggaaattt taaaaattac
     9121 aatcaaagag tttataaccc agattataag atcgcagttg gtgatcaaat cagtcttaaa
     9181 atttggggag ctgttgagtt ttcgcaagtt ttagcggtgg attctcaagg aaatattttt
     9241 atccctaaag taggagctgt aaatttacta ggcgtgaaaa atagtgccct tgtaagtgtt
     9301 ataaaagcac gtgttaataa aatctataaa agcaatgttt ttgtttatgc agatatgaat
     9361 gcttatcaaa atgtcagtgt ttttgtaaca ggaagtgtta atgctccagg actttatcaa
     9421 ggacttagtt cggattcagt gattcagtat cttgataaag cagggggtat aaatttagaa
     9481 tatggaagtt ttagagatat tcaaattttg cgtaataaca gcgtgataaa aaatatcgat
     9541 ttatatgatt ttttactaaa aggacaaatg gatctttttc cttttagaag cggagatgtt
     9601 attttagtag gaaatgttca aaattacgct tttgttaacg gtgatgtgca aagacctttt
     9661 cgttttgaac tttcaaatga tattaaaact ttagctgact tagctagagt atcaggtgct
     9721 aaacctatcg tgactaatgc tatcgtaaaa agttatggtg aagatcataa acttgatgtc
     9781 agtgcttata ataaaatgca attttcaaaa gttttactta gaacgggaga tgaggtagaa
     9841 tttcaccctg agtatgtttc tgaaaatata actataagtg taaatggcga gcataatggt
     9901 ttaaaaactt tagttgtggg taaaggaacg actttagaag atatttctaa attaattaaa
     9961 gctaatccac aatcaaacat gcaagcttta caagtgttta gaaaaagtgt agctagaact
    10021 caaaaagaac ttatcaatgc tcagcttaaa gagcttgaaa ctctagcttt aactagtggt
    10081 tctgttacag ctcaaggtgc agctataaga gctcaacaag caaaaacgat tttagaattt
    10141 atccaaagag ctaagcaagt agagcctaag ggtcaaattg tcattgataa tccaaagtct
    10201 tataattcgg ttattttaga agacggtgat actattaatg taccaagtaa gaataatctc
    10261 atcatagttc aaggtgaggt ttctttacct ggagcttttg tgtatgataa gggcaaagat
    10321 ttaagatatt atatcaatct tgcaggaggt tatggagaaa gagcggatac ttcaaaagtt
    10381 ttggtgatac gaagcaatgg aaaagctgaa aaatatcata gtggtataga tatgaaacca
    10441 ggtgattctg tgttggtatt gccaaaagta gatagtgaga atttgcaaat tttttcaatg
    10501 ttaactcaaa ttctttatca aattgctatc gcaaccaatg ttgtgcttaa tctttaaggt
    10561 ttaaatatga atactcttga aatagccaaa gaagtctttg aaaaagaagc acaagctatt
    10621 ttggatttgg ctaaaaattt agatgaaaat tttaatcaag ctgtgaattt gatgctaaac
    10681 accaaagggc gttgcatagt cagtggaatg ggtaaatcgg gtcatatagg tgctaagata
    10741 gcagctactt tagcaagtac aggaacgcca agctttttca tccatccagg agaggctttg
    10801 catggagatc ttggaatgct aactcctgaa gatgttttaa ttactatttc aaattcagga
    10861 gaaactgaag aaattttaaa aatcattcca gctataaaaa agcgtaaaat tccacttata
    10921 gtaatgtgtg gtaaaaaaaa ttccaccctt gtaaagcaaa gcgatatatt tttaaatata
    10981 gctgtggaaa aggaagcttg tcctttgcaa cttgctccta tgtcttcgac aaccgcaacc
    11041 ttggttatgg gggatgcttt agctgctgct ttgatgaagg taagaaattt caagcctgat
    11101 gattttgccc tttttcatcc aggggggagt ttggggcgta agcttttaac caaggtaaaa
    11161 gatcttatgg tttcaagtaa ccttcctata gtgcatcctg atactgaatt taacgatctt
    11221 gttgatgtga tgactagtgg aaagctaggg ctttgtgtgg tacttgaaaa tgaaaaattg
    11281 gttggtatca tcactgatgg ggatttgcgt cgtgctttaa agacaagcga taaaccaaga
    11341 tttgatttta gagccaaaga aatcatgagt acaaatccta aagtagtcga tgctgatgct
    11401 atggcaagtg aagcagagga gatcatgcta aaacataaaa tcaaagaaat tatagtaggg
    11461 aaagaagaaa aagttgtagg tattatccag ctttatgcca taggaaatgt ttaatgcctc
    11521 ttttatctgt tattattcct tttggattaa gtaaagaacg tccttatata gaagaaagag
    11581 ttcttcaaaa agctaaattt tttcaaagcg atgagaatat agaatttatt ttcgttgaag
    11641 gatattcatc taaagatcac gagcttaaaa attttatcca agcaaaccat catatttatc
    11701 ttaaagatat ggatcaaaaa gctttttctc aaggaagatg taggaattta ggagcaagtt
    11761 atgcgcattc aaatgttctt ttgtttttgg atgtggattg ttatatttct ttggataatt
    11821 ttgaaaaaat tttaaaacta attcaaatta aaaatatttc tcaaaatatc aatgctttga
    11881 tagttttgcc tgtggtgtat cttaataaag aagctaatga aaaattaaaa caatacgatg
    11941 ataaattttg ggatattttg atacaagagg atttatttac agcaaaaaat acttgggtaa
    12001 aattttttgc cccaagttct acttcaagta ttgtgataaa taaatatcag tttttaagat
    12061 taggcggaaa tgatgaaaat tttatcgggc atggttatga ggattttgat ctttttgcta
    12121 gaattttaaa agcttgtgtg agttttgaaa aaatgcctgc taatttaagc tatgatgcta
    12181 gaaattggaa tttttttaac tttaaaggtt ttagatcttg gttttcattg cttggttatg
    12241 aggcttgttt ttatggaatt tatatgtatc atttttatca tatagaaccc aatcaaaacg
    12301 cttatatgca caataaagat aagaatcatc ggctttttta taagcattta aaaaatatca
    12361 aaaaacacga tttaaagcct ttgcaagttt ttaaagccaa aggtgaaaaa gttttaatgc
    12421 tttttaaaga tcaaaattat gattttaagg atattagtgt ttatatggga gaaatcatct
    12481 ataaaaatat cagtgatttt tttatggata aagagttaaa atatgaactt ttgttggatt
    12541 ttttacaaca agaaaaaatc actaaaatat ttttggatgc aagtataaaa ctacaatttg
    12601 atggtataga ttattgtgat attttttatt ttcaaaaagg aattttacct cattcttggt
    12661 tttttgcaaa aaaattagat ttagattata aacaagattt aaatttaagc gagcaaaaac
    12721 tttatcaagt gaaagaatat ttcttaactt taaaggagga tgaaaaaaaa gttatcttag
    12781 attttttaag ccaaaacaat gatgataagt atgatttgta taaaatgctt tattatttga
    12841 ttaacgagct ttatagtttt gagcatgagg gaatttttta tcaaatcatc attgataaag
    12901 aaaaaatgct gatggcacaa aaacatgata aaagctttta tcctttaaga tcttttgttt
    12961 ataaacctta tttgcatgag cttaagagta taagaccttt ttcatttttg atgaaaattt
    13021 taggtttaga gtatcttggt gctatgattt cacatactaa attttatcgc ttggcaagaa
    13081 aattgttttt taatcccaag ggtttttttg aagatttaag agctaaaaag gctagaaatt
    13141 gatatgttgt taaaagcaaa gtataaaaaa aatatatctt tcttctttaa aagtttgcta
    13201 atttccatgc aaaatttttt aaaacaattt aaacctaaaa aatacaaagc ctataataaa
    13261 tatgtcatag tttcagcggt ttataatgtg gaaaaatatt tagatgattt ttttaagtct
    13321 ataattaatc aaagattgga ttttaaaagt aatatttatc taatttgcgt tgatgatggt
    13381 tctactgata attcagccaa tatcattaaa aaatatcaaa aaaaataccc aaaaaatatt
    13441 gcctatctat ataaagaaaa tggtggtcag gcaagttcga ggaatttagg tttaaaatat
    13501 ttaaaagaaa atgatttaaa tattttttgg gtaaccttta ctgatcctga tgatttttta
    13561 gatagggatt atttttatga ggtagatagt tttttaaaaa aacaaaataa tatagctatg
    13621 gtggctacaa atattatttt ttatagagaa aaaagaaaga ttttatataa agatactcat
    13681 gctttaaatt ttaaattcaa aagacaaaaa agtgtttatg ataatataaa attaaa
//
LOCUS       DBBXPZ010000044        13013 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.046, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000044 DBBXPZ010000000
VERSION     DBBXPZ010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13013)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13013)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13013
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.046"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            53..952
                     /gene="hisG"
                     /locus_tag="ACJFD7_001075"
     CDS             53..952
                     /gene="hisG"
                     /locus_tag="ACJFD7_001075"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HGG0859895.1"
                     /translation="MQENTRLRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFST
                     NLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELERQSLGENPSYKLLKKLDFG
                     YCRLSLALPQENKFQNLKDFEGLRIATSYPQLLKRFMKENGINYKNCTLTGSVEVAPR
                     ANLADAICDLVSSGATLQANNLKEVKVIYESRACLIQKENALSKEKQALVDKIMLRVA
                     GVMQARESKYIMLHAPKEKLDKIQALLPGVERPTILPLAHDEKNVALHMVSKENLFWE
                     TMEALKEEGASSILVLPIEKMLK"
     gene            960..2246
                     /gene="hisD"
                     /locus_tag="ACJFD7_001076"
     CDS             960..2246
                     /gene="hisD"
                     /locus_tag="ACJFD7_001076"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HGG0859896.1"
                     /translation="MQILVYDNLDEKQKEEALKRPAISAKDEISKIVSSIIKEVQEKG
                     DEALIEQALKFDKAEISKIKITQEEITQASNRLDKDLQEAILVAYENIKKFHEAQIPH
                     EIALETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPA
                     KINDAVLFCAKLCGVDEIYQMGGAGAIAALAYGTQSVLKVDKIFGPGNAFVTEAKRQV
                     SSDINGAAIDMQAGPSEVLVIADDLANEKFVASDLLSQAEHGADSQVILVCLSQDFAK
                     KASDEVQSQLELLPRKELASKSIANSRIIIAKDLNQALEISNLYAPEHLIIQTQNPRE
                     LLKGVKHAGSVFLGAYSPESMGDYASGTNHVLPTYGLTKTHSSLGLADFSKRMTVQEL
                     SKEGFLALGKSVEILAQNEHLDAHKNAVTFRLESLK"
     gene            2243..3301
                     /gene="hisB"
                     /locus_tag="ACJFD7_001077"
     CDS             2243..3301
                     /gene="hisB"
                     /locus_tag="ACJFD7_001077"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004401 - histidinol-phosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HGG0859897.1"
                     /translation="MSQKILFIDRDGTLIEEPKSDFQIDTLEKLRFEKDAIPTLLKLK
                     KFGFKFVMVSNQDGLGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCA
                     CRKPKTAMLEEYIKHELYDKEQSFVIGDRESDMILASNLGVRGLKYGELSWKEIENEI
                     LSSFRSASYQRTTKETDIKVKVCLNGGKVSIKTGIDFFDHMLEQIAVHGGIGLEISCK
                     GDLEIDEHHSVEDVALALGACIKKALGDKIGIARYGFALPMDECLASCAMDFCNRPHL
                     VYKAKFKKSHLGALSTEMIEHFFYSLSYAMGVSLHLKVKGKNDHHKAEGLFKAFAKAL
                     KMAVKIESENLASSKGVI"
     gene            3298..3885
                     /gene="hisH"
                     /locus_tag="ACJFD7_001078"
     CDS             3298..3885
                     /gene="hisH"
                     /locus_tag="ACJFD7_001078"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HGG0859898.1"
                     /translation="MKIIIIDTACANLASLKFCLDRLGFNATISRNLKELESADKLFL
                     PGVGTAKEAMKNLEQFNLIDFIQNTKKPLLGICLGMQILGNFSEELNQETLKLIDFTT
                     QKFKAKEGFTFPHMGWNEVYSSHALFKGLEGAYFYFVHSYCVGLGKYTIANCEYSQKF
                     SASVMKDNFYGVQFHPERSSEAGEILISNFIKDIG"
     gene            3882..4613
                     /gene="hisA"
                     /locus_tag="ACJFD7_001079"
     CDS             3882..4613
                     /gene="hisA"
                     /locus_tag="ACJFD7_001079"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003949 -
                     1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HGG0859899.1"
                     /translation="MTQIIPALDLIDGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAG
                     AKELHLVDLTGAKDPSKRQLALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVV
                     IGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQETSDKKLMEVLDFY
                     SNKGLKHILCTDISKDGTMQGVNARLYKLIHEIFPHICIQASGGVASLKDLENLKGIC
                     SGIIVGKALLDGVFSVEEGIRCLAN"
     gene            4598..5554
                     /locus_tag="ACJFD7_001080"
     CDS             4598..5554
                     /locus_tag="ACJFD7_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="HGG0859900.1"
                     /translation="MSSKLSYKELALEILKQSDRPLSVNEIWQKALEKGLDKKLSSIG
                     QTPIATLGARIYVDIKELQHNSLFIKASQKPRTFWLKERENELLKLDNKNEITNEKQE
                     KNKFHERDLHPLLVKFLYENLDFNLNCKTIYHEQSKKGKGGEDKWNYPDIVGVYFPYD
                     DYEKETITLLENIKQNSYKLFSFELKIALNFSNLKECYFQAVSNSSWANEGYLVVLQE
                     IDSEVLSELRRLNQSFGIGVIKLEKDISNSQILISAKEKELDIQTLNMLINKNPNFKE
                     FIDDINKQIKVGKEAKIQANFDEIKSDEEMEKYLKEKCILEK"
     gene            5555..6322
                     /gene="hisF"
                     /locus_tag="ACJFD7_001081"
     CDS             5555..6322
                     /gene="hisF"
                     /locus_tag="ACJFD7_001081"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HGG0859901.1"
                     /translation="MLTKRIIACLDVKDGRVVKGTQFKNHKDMGDIIELARYYSQNGI
                     DELVFYDIAASARKERISREWVSEVAKNINIPFCVAGGIKSEEDAAELLANGADKISI
                     NSPALNDPSLITRLAKSFGVQCVVVGIDSFKDENGNLKVFQYTGDEKTSKHSGKSTLE
                     WVKKVQDLGAGEIVLNMMNQDGVKNGYDLEQLEAVYKICKVPLIASGGAGKMEHFLEA
                     FKLGIDGALAASVFHQKLIDIKELKIYLKNQGLSIRI"
     gene            6324..6947
                     /gene="hisIE"
                     /locus_tag="ACJFD7_001082"
     CDS             6324..6947
                     /gene="hisIE"
                     /locus_tag="ACJFD7_001082"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HGG0859902.1"
                     /translation="MQNFKELNEKIAWQKVDNLLPVIIQDAKTCEVLMLGFMNNEALE
                     KSLESGKVVFFSRTKQRLWMKGEESGNFLNIIDLSLDCDNDTLLILANPVGPTCHTGD
                     ISCFEKISKNADFVFLARLEKLINARKNADENTSYTAKLFKSGTKRIAQKVGEEGVET
                     ALAATVKDKEELICEAADLMYHLSVLLADANLSFSDVISKLKERHKA"
     gene            complement(6972..8132)
                     /locus_tag="ACJFD7_001083"
     CDS             complement(6972..8132)
                     /locus_tag="ACJFD7_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrahydrodipicolinate N-succinyltransferase
                     N-terminal domain-containing protein"
                     /protein_id="HGG0859903.1"
                     /translation="MINTKEDFLLLIKQIEQKSGYKKPKAFGIARLDRGQLNKNKILQ
                     ASFALINYEQNFGSAAIMLEAFMQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEE
                     EGHQNIDLLKIIKDKFKDDEFAFVCLFEDKEPLSVESVYLKLYLLSTKKVPLRSINLN
                     GAFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLSHIIPEDNTR
                     ILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGA
                     SILGVLSGTSGNAISVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEEL
                     AKLNPYFNFDKEIYKGLELKGLNGLHFRQDSISGAMIVALNKKAVKLNEALH"
     gene            complement(8158..9264)
                     /locus_tag="ACJFD7_001084"
     CDS             complement(8158..9264)
                     /locus_tag="ACJFD7_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0140663 - ATP-dependent FeS chaperone
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HGG0859904.1"
                     /translation="MKEQILEKLKTVKYPGFEKDIVSFNFVKDIKIQDDGVFIDIEIV
                     SANPEVANEIRKNATEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMV
                     SSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETKTQPEVVGQRLK
                     PILTHGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD
                     AQITSAQSIPITAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENMSGFLCPDNG
                     KEYDIFGKGTAEDMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESVSSRRYLMA
                     AEKIWSFIEKINNEGGADNSAIQPVMNGKSACSH"
     gene            9387..10502
                     /locus_tag="ACJFD7_001085"
     CDS             9387..10502
                     /locus_tag="ACJFD7_001085"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_function: GO:0050518 - 2-C-methyl-D-erythritol
                     4-phosphate cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HGG0859905.1"
                     /translation="MSEISLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSF
                     YPFKKIVVTSSNITYMKKFTKNYEFIEGGDTRAESLKKALELIDSEFVMVSDVARVLV
                     SKNLFDRLIENLDKADCITPALKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKAL
                     DQNLEFTDDSTAIAAMDGKIWFVEGEENARKLTFKEDLKKLDLPTPSFEIFTGNGFDV
                     HEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMK
                     FKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEF
                     RINVKATTTEKLGFIGRKEGMAVLSNVNLKYFDWTRL"
     gene            10499..11386
                     /locus_tag="ACJFD7_001086"
     CDS             10499..11386
                     /locus_tag="ACJFD7_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HGG0859906.1"
                     /translation="MKVLIIENEIYLAQSISIKLSDAGYSCEIINSFDEYNGEKYYDI
                     ILLSTNTNNFLKAVGQFKHSIIILLISYISTDTVSNPLKLGASDYIQKPFMIEELIRK
                     IKHYQDFRKLSILNKAYQSYIKSRLETIKIPEYNYKKLKLPLILKSNKQSSADAFVFN
                     YANECDITLSFIDLTSTNSVEKVMKLPTENNLLFLSNFQALKATEKEKLLDFIQNKNV
                     ILHTNSNTDDLKINCINLNDNEKNINSNEILTIDEYVKYVIINYQNIFPDTDLSKKLG
                     ISRKSLWEKRKKYEISKKK"
     gene            11364..12524
                     /locus_tag="ACJFD7_001087"
     CDS             11364..12524
                     /locus_tag="ACJFD7_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HGG0859907.1"
                     /translation="MKSARKNKNIIIDQNEFGILSLIKEGLLGTCTHLMNEKEVNEII
                     KSGKFKGESFPYPLSFAPKNAEEALNDIKSGDRIDLMLDEKVVGHIDFKSQFKNNKNF
                     SDIFSPNTCSLEDMGTTCISGKIEIYNSQIEKIKENFQQIKNNLNAQKITAIVSSFDP
                     LHRAHERMFRWTIDKADLVVIFLVESFDVNGFEFELKEAYLKKFIQNYLPPDRIFIFP
                     LKNINIFHAHLNPGLESIIAKSLGCTKLVVGQNHTGLGMFYDDNQPKTILDDFSKDYG
                     IEVIVLPEFVFCDQCRMIVSTRSCPHGCHHHLHYNSQSLKDLLRAGIIPPAIFMRKEV
                     SSVILTSLFPNRLKNMQKIYNELFPTDGILEYKNDEEFYQKLLEIHQMSYMV"
     gene            12529..>13013
                     /locus_tag="ACJFD7_001088"
     CDS             12529..>13013
                     /locus_tag="ACJFD7_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HGG0859908.1"
                     /translation="MQKLFLTFFYSGSIKKASGTFGTIAALIPAFFILKYLGINTLFL
                     LSILIFVASIRVIDDYEKKTGIHDDKHIVIDEVAGVFLACAIAASVENSIVNFVLAFV
                     LFRLFDITKPSIIGKIDKKVKGGLGVMLDDMLAGLFAGLLSAVIYGFLLKFNLVFWDI
                     N"
BASE COUNT         4709 a         1922 c         2219 g         4163 t
ORIGIN      
        1 tcaactactt atgctaatat aagtttttaa tttttaattt caaggatatg ttatgcaaga
       61 aaacactcgt ttacgcattg cgatacaaaa atcaggtaga ctttcaaaag aatccataga
      121 gcttctttca gaatgtggtg ttaaaatgca tatccatgaa caaagcttga tcgctttttc
      181 tacaaattta cccatagata ttttacgcgt tagagatgat gatatccctg ggcttatttt
      241 tgatggggtt gtagatttag gcattatagg ggaaaatgtt ttagaagaaa atgaacttga
      301 acgccagtct ttaggagaaa atccaagcta taagctttta aaaaagctag attttggata
      361 ttgccgtctt tctcttgcct tacctcaaga aaataaattt caaaatttga aagattttga
      421 aggcttaagg atagctactt cttatccaca acttttaaag cgttttatga aagaaaatgg
      481 gattaattat aaaaattgta cgcttacagg ttctgttgaa gtagccccta gggcaaattt
      541 agccgatgcg atttgcgatc ttgtttcaag cggggcaact ttacaagcaa acaatcttaa
      601 agaagttaaa gtcatttatg aatctcgtgc ttgtttgatt caaaaagaaa atgctttaag
      661 taaagaaaaa caagccttag tggataaaat tatgttgcgt gtagcaggag taatgcaagc
      721 aagagaatct aaatacatta tgcttcatgc tccaaaagaa aagcttgata aaattcaagc
      781 cctacttcca ggagttgaaa gaccgactat cttaccttta gcacacgatg aaaaaaatgt
      841 agctttacat atggtaagta aagaaaatct tttttgggaa accatggagg ctttaaaaga
      901 agaaggtgcg agttcgattt tagttctgcc tatagaaaaa atgttaaagt gagtaaaaaa
      961 tgcaaatttt agtatatgat aatttggatg aaaaacaaaa agaagaagcg ttaaaacgcc
     1021 ctgctataag tgcgaaagat gaaatttcaa aaatagtaag ttctatcatt aaagaagtgc
     1081 aagaaaaagg cgatgaagct ttgatagaac aagctttgaa atttgataag gctgaaattt
     1141 caaagattaa aatcactcaa gaagaaatca ctcaagcaag caatcgttta gataaagatt
     1201 tacaagaagc tattttagtg gcttatgaaa atatcaaaaa atttcacgaa gcccaaatcc
     1261 cacatgaaat cgctcttgaa actacaaaag gcgttaaatg tgaagtttta acacgcccta
     1321 tagaaaaagt aggactttac ataccagggg gtttggcacc tttgttttca acggttttaa
     1381 tgctagctat tcctgcaaaa attgcaggtt gtgaaaaaat cgttttagca agtcctgcaa
     1441 aaatcaatga tgctgtgctt ttttgtgcta agctttgtgg cgtggatgaa atttatcaaa
     1501 tgggcggtgc aggagctata gcagctttgg cttacggtac ccaaagtgtt ttaaaggtgg
     1561 ataaaatttt tggcccagga aatgcctttg taaccgaagc aaaacgccaa gtaagtagtg
     1621 atataaacgg agcagctatt gatatgcaag caggacctag tgaagtttta gtcatagctg
     1681 atgatttagc taatgaaaaa tttgtagcta gtgatttgct ttcacaagct gaacatggtg
     1741 cagattctca agtgatttta gtgtgtttaa gtcaagattt tgctaaaaaa gcaagtgatg
     1801 aagtccaaag tcaattagaa cttttgcctc gcaaagaact tgcaagcaaa agcattgcta
     1861 attcacgcat tatcatagct aaagatttaa atcaagcctt agaaatttca aatctttacg
     1921 cccctgaaca tttgatcata caaactcaaa atccacgaga acttttaaaa ggtgtaaaac
     1981 acgcaggatc agtattttta ggagcttatt ccccagagtc tatgggtgat tatgcaagtg
     2041 ggacaaatca tgttttacct acttatggac ttactaaaac gcattctagt ttaggtttgg
     2101 cagattttag taaaagaatg accgttcaag agttaagtaa agaaggtttt ttagctttag
     2161 gtaaaagtgt tgaaatttta gcacaaaatg agcatttaga cgcgcacaaa aatgcagtaa
     2221 cttttcgttt agaaagctta aaatgagtca aaaaatcctt tttatagata gagatggcac
     2281 tttaatagag gagccaaaaa gcgattttca aatcgatact cttgaaaaat tgcgttttga
     2341 aaaagatgct attcccactc ttttaaaact aaaaaaattt ggatttaaat ttgttatggt
     2401 aagcaatcaa gacggtcttg gaacaccaag ttttccaaag gaaaattttg aaatcgctca
     2461 tgaaaaaatg cttgatattt taaaaagttg cggtatagaa tttcaagata tttttatttg
     2521 tccgcatttt gaaaatgaaa attgtgcttg cagaaaacct aaaaccgcta tgttagaaga
     2581 gtatatcaaa cacgaacttt atgataagga gcaaagtttt gttataggag atcgtgagag
     2641 tgatatgatc ttggcttcaa atttaggcgt gcgtggttta aaatacggcg aactttcttg
     2701 gaaagaaata gaaaatgaaa ttttaagttc ttttagaagc gcgagttatc aaagaactac
     2761 taaagaaaca gatataaaag taaaggtatg cttaaatggg ggtaaggtta gcattaaaac
     2821 aggtattgat ttttttgatc acatgttaga gcaaatcgct gtacatggag gtatagggct
     2881 tgaaatttct tgtaaaggag atttggaaat cgatgagcat catagcgttg aagatgtagc
     2941 cttagcactt ggagcttgta tcaaaaaagc tttaggggat aaaatcggca ttgcaagata
     3001 tggttttgct ttacctatgg atgagtgttt ggcaagttgt gcgatggatt tttgcaatcg
     3061 tccccattta gtctataaag ccaaatttaa aaaatctcat ttaggggctt taagcacaga
     3121 aatgatcgag cacttttttt attctttaag ctatgctatg ggcgtgagtt tgcatttaaa
     3181 agttaaaggc aaaaacgatc atcataaagc cgaagggctt tttaaagcct ttgcaaaagc
     3241 tttgaaaatg gcagtaaaaa tagaaagtga aaatttagcc agctctaaag gagtgatatg
     3301 aaaatcatca tcatcgatac agcctgtgcg aatttagcat ctttgaaatt ttgtctagat
     3361 agattaggtt ttaatgcaac tatcagtagg aatttaaaag aacttgaaag tgcggataag
     3421 ctttttttac ctggagtggg taccgcaaaa gaagcaatga aaaatttaga acaatttaat
     3481 cttattgatt ttattcaaaa taccaaaaaa cctttgcttg gtatttgttt aggtatgcaa
     3541 attttaggaa atttttctga agaattaaat caagaaacct taaaactcat agattttaca
     3601 actcaaaaat ttaaagctaa agaaggcttt acttttccac atatgggatg gaatgaagtt
     3661 tatagctctc atgctttgtt taaaggctta gaaggggctt atttttattt tgtgcatagt
     3721 tattgtgtag gacttgggaa atacactata gcaaattgtg agtattcgca aaaatttagc
     3781 gcaagcgtaa tgaaagataa tttttacggg gtgcaatttc accctgaaag aagcagtgaa
     3841 gcgggggaaa ttttaatttc aaattttatt aaggatatag gatgactcaa atcatacccg
     3901 cacttgatct tatagatggc gaagtggtgc gtcttgtaaa aggggattac gaacaaaaaa
     3961 aagtatataa atacaatccc ttaaagaaat ttaaagaata cgaaaaagca ggagcgaaag
     4021 aacttcatct tgtagatctt acaggtgcaa aagatcctag caaaagacaa cttgctttga
     4081 tagaaaaatt agctaaagaa gtcagtgtca atttacaagt aggtggaggc atacgctcta
     4141 aagaagaagt taaagctttg cttgattgtg gagtaaaaag agtggttata ggatctatgg
     4201 cgattaaaga tgcgacttta tgtcttgaaa ttttaaaaga atttggtagc gaagctatag
     4261 ttttagcctt agatacgatt ttaaaagaag attatgttgt ggctgtaaat gcttggcaag
     4321 aaacaagcga taaaaagctt atggaagttt tagattttta tagcaataaa ggcttaaaac
     4381 acatactttg cacagatatt tcaaaagatg gcaccatgca aggagtaaat gcaagacttt
     4441 acaaacttat ccatgaaatt tttcctcata tttgcattca ggcaagtggt ggagtagcga
     4501 gcttaaaaga ccttgaaaac ttaaaaggaa tttgtagtgg gattatcgta ggaaaagctt
     4561 tattagacgg agtttttagt gtagaagaag ggataagatg tctagcaaat taagctacaa
     4621 agaacttgct ttagaaattt taaaacaaag tgacagacct ttaagtgtta atgaaatttg
     4681 gcaaaaagct cttgaaaaag gcttagataa aaagctttct agtatagggc aaactccaat
     4741 tgctacttta ggagctagaa tatatgtgga tataaaagaa ttacaacaca attctttatt
     4801 tattaaagct tcccaaaaac ccagaacttt ttggttaaaa gaaagagaaa atgaactttt
     4861 aaaacttgat aataaaaatg aaattaccaa tgaaaaacaa gaaaaaaata aatttcatga
     4921 aagagattta caccccttgc ttgtaaaatt tttatatgaa aatttagatt ttaatttaaa
     4981 ttgcaaaaca atttaccacg aacaaagcaa aaagggtaag ggcggggaag ataagtggaa
     5041 ttatcctgat attgtagggg tttattttcc ttatgatgat tatgaaaaag aaaccataac
     5101 acttttagaa aatatcaaac aaaacagcta taaacttttt tcttttgaac ttaaaattgc
     5161 tttaaatttt tcaaatttaa aagaatgcta ttttcaagct gtaagtaatt ctagctgggc
     5221 aaatgaaggc tatttggttg ttttacaaga aattgatagc gaagttttaa gcgagttaag
     5281 acgcttaaat caaagttttg gcataggagt gataaaactt gaaaaagata tttcaaattc
     5341 tcaaatttta attagtgcaa aagaaaaaga acttgatatt caaacactaa atatgctgat
     5401 caataaaaat ccaaatttta aagaatttat tgatgatata aacaaacaaa ttaaagtggg
     5461 caaagaagca aaaattcaag ctaattttga tgaaattaaa agcgatgaag aaatggaaaa
     5521 atatcttaaa gaaaaatgta ttttggagaa ataaatgctt acaaaacgca taattgcatg
     5581 tttagatgtc aaagatggca gagtagtaaa aggaacacaa tttaaaaacc ataaagatat
     5641 gggagatatc atagagcttg ctaggtatta ttctcaaaat ggtattgatg agcttgtttt
     5701 ttatgatatt gctgcaagtg ctagaaaaga acgcatatca agagaatggg taagtgaagt
     5761 agcaaaaaat atcaatattc ctttttgtgt tgcagggggt attaaaagcg aagaagatgc
     5821 ggctgaactt ttagctaatg gggcagataa aatttctatc aattctcctg ctttaaatga
     5881 tccaagccta atcacacgcc ttgctaaaag ctttggcgtg caatgcgtag tagtagggat
     5941 tgatagtttt aaagatgaaa atggaaattt aaaagtattt caatacacag gggatgaaaa
     6001 aacaagtaaa catagtggaa aaagcacttt agaatgggtt aaaaaagtgc aagatctagg
     6061 tgcaggcgaa attgttttaa atatgatgaa tcaagatggt gttaaaaatg gctatgattt
     6121 agaacaatta gaagctgtat ataaaatttg taaagtacct ttgatcgcaa gtgggggagc
     6181 gggaaaaatg gaacattttt tagaagcttt taaactaggt atagatgggg ctttagctgc
     6241 ttctgttttt catcaaaaac ttatagacat taaagaatta aaaatttatc ttaaaaatca
     6301 aggcttaagt ataaggatat aatatgcaaa atttcaaaga acttaatgaa aaaatcgctt
     6361 ggcaaaaagt ggataatctt ttacctgtca tcatccaaga tgcaaaaact tgcgaagttt
     6421 taatgctagg ctttatgaat aatgaagcct tagaaaaaag cttagaaagt ggcaaagtag
     6481 tctttttttc acgcacaaaa cagcgtcttt ggatgaaggg tgaagaaagt ggaaatttct
     6541 taaatatcat agatttaagc ttagattgtg ataatgacac gcttttaatt ttagcaaatc
     6601 ctgtagggcc tacttgtcat acgggcgata tttcttgttt tgaaaaaatt tctaaaaatg
     6661 cagattttgt ttttctagcc agacttgaaa aacttattaa tgcacgcaaa aatgccgatg
     6721 aaaatacttc ttatacagca aaacttttca aaagtggtac aaaacgcatc gcacaaaaag
     6781 ttggtgaaga aggcgtagaa acagctttag cagcgacagt aaaagataaa gaagagctta
     6841 tttgtgaagc agcggattta atgtatcatt taagtgtttt acttgcagat gcaaatctta
     6901 gtttctcaga tgtgatttca aaattaaaag aaagacataa agcttaaagc tttatgtaaa
     6961 ataaatttat atcaatgcaa ggcttcatta agtttgactg cttttttatt taaagctact
     7021 atcatagcac cacttataga atcttgacgg aaatgtagcc catttaaacc tttaagctct
     7081 aagcctttgt aaatttcttt atcaaaatta aaataaggat taagtttagc aagttcttcg
     7141 gcatctttga gtaaaaattt cgttccttct aacaccgcaa tacctgcatc aactatacaa
     7201 ttatccccta aaggaattcc tgtaactgaa ttagctccta aaagacaagc cttacctaca
     7261 cttatagcat tgccacttgt tccacttaaa acacctaaaa tcgaagctcc accacctaca
     7321 tcagaacctt ctcctactat agcacttgag ctaatacgcc cttcaaccat acaagctcct
     7381 gttgtgcctg cattaaaatt cacataactt gcccctggca tgatggttgt tcctgctgct
     7441 aaagatgcac ccattcttac tttggaactt tctaaaattc ttgtattatc ctcagggata
     7501 atatgcgata aaaatcttgg gaatttatca acaaaatcga tttttggata ttgattgctc
     7561 atttttaaac gcatttcatt tgctcttaaa tactcaagct cgataggctt atcatcactc
     7621 caagctacat tgcttaaaag tccaaaagct ccatttagat tgatacttct taaaggtact
     7681 tttttagtag aaagcaaata aagttttaga taaacacttt ctacacttaa aggttcttta
     7741 tcttcaaaaa gacaaacaaa agcaaactca tcgtctttaa atttatcttt gataatcttt
     7801 aataaatcaa tattttgatg cccttcttct tctaaaaaag gtttaaaaca agaaagtgca
     7861 aaatcaatat cttctaattt taaagtttgc acaaactcac tcgcattaaa atcaatctcc
     7921 acgccccttt gcataaaagc ttcaagcatg attgctgctg agccaaaatt ttgctcgtaa
     7981 ttaatcaaag caaaacttgc ttgcaagatt ttatttttat ttagctgtcc tctatcaagc
     8041 cttgctatac caaaagcttt aggtttttta taaccacttt tttgctcgat ttgtttgatt
     8101 aaaagtaaaa aatcttcttt agtattaatc attttctttt ccttatccac ttaattttta
     8161 atgcgaacac gcactttttc cattcatcac aggttgtata gcagaattat ccgcaccacc
     8221 ttcattgtta atcttttcta taaaactcca aattttttcg gccgccatta aataacgcct
     8281 tgaactcaca ctttcagggt gataaaaact cacaggcttg ccttcatctc caccttctct
     8341 tactatcatt tctataggaa tttgtgctaa aacttcactt ttataggctt ttgccatatc
     8401 ttcagctgtt cctttaccaa aaatatcata ctctttacca ttatcaggac ataaaaatcc
     8461 actcatattt tcaatcacac ccgctatagg aatatgaagt ttattaaaca tatctaaagc
     8521 tcttttgcta tcgtctaaag atacggtttg aggcgtgctt acacaaactc ctgcagtaat
     8581 aggaatactt tgcgcagaag taatttgtgc atcgcctgtt cctggaggca tatctaaaaa
     8641 caatacatca agttcaggcc aaatcacatc agctaaaagt tgctcgattg ctttcataat
     8701 catagctcca cgccacataa gaccttgacc ctcttcgatc aaaaccccca tactcatcat
     8761 ataaacacca tgagttaaaa taggctttaa tctctgccct actacttcag gctgagtttt
     8821 ggtttctcct agcattcttg gaatatttgg cccataaata tccgcgtcta aaatccctac
     8881 tctttttccc attttagcca tggaaattgc taaatttact gtagttgtag atttacccac
     8941 accacctttt ccacttgaaa ccatgatgaa attttttact tgtggagcga tattttttcc
     9001 acttcttgaa ttactttttt cttcaggaat ttttggagtg atgatattaa gttcgatatt
     9061 ttttaaagcc aaactcgata aagcttcagt agcattttta cgaatttcat tagctacttc
     9121 aggatttgct gaaacgattt ctatatcaat gaatacacca tcatcttgaa ttttaatatc
     9181 ttttacaaag ttaaaactca ctatatcctt ttcaaaacca ggatatttta cagtttttaa
     9241 tttctctaaa atttgttctt tcatattttt tccttgtctt ttaaaaaaat caattttact
     9301 aataaaatga taaaatttag ctttttataa gtgtataata tggtaacatt ataaaaacca
     9361 acaatattaa aaagaggaat gaaaaaatga gtgaaattag cctcattatg ttagcagctg
     9421 gaaattctac tcgttttaac acaaaggtaa aaaaacaatt tttacgactt ggaaatgacc
     9481 ctctttggct ttatgcaaca aaaaatttaa gctcttttta tccttttaaa aaaatagttg
     9541 ttacctctag taatatcact tatatgaaaa aatttactaa aaactatgaa ttcatagaag
     9601 gtggtgatac cagagcagaa tccttaaaaa aagccttaga gctcatagat agcgaatttg
     9661 ttatggtaag tgatgtagca agggtattgg tgagtaaaaa tttgtttgat cgtttgattg
     9721 aaaatttaga taaagcagat tgtattaccc ctgctttaaa agttgcagat acaacactct
     9781 ttgacaatga agccttgcaa agagaaaaaa tcaaactcat tcaaaccccg caaatttcta
     9841 aaaccaaatt gcttaaaaaa gccttggatc aaaacctaga atttacagat gatagcacag
     9901 ctatagctgc aatggatgga aaaatttggt ttgttgaagg tgaagaaaat gcaagaaaac
     9961 taacctttaa agaagatctt aaaaaacttg atttgcctac acctagcttt gaaattttta
    10021 ctggcaatgg ttttgatgtg catgaatttg gagagaatcg ccctttgctt ttagcaggag
    10081 tgcaaattca tcctactatg gggcttaaag cacacagcga tggagatgtt ttagctcact
    10141 ctttaaccga tgcgatttta ggtgctgcag gacttggaga tataggagag ctttatcctg
    10201 atactgatat gaaatttaaa aatgccaact ccatggagct tttaaaacaa gcttatgata
    10261 aagtcagaga aataggtttt gaactcatta atatagacat ttgcgtcatg gcacaaagcc
    10321 ctaaacttaa agactttaaa caagctatgc aaagcaatat agctcatact ttagatttag
    10381 atgaatttag aatcaatgtt aaagccacaa caacggaaaa attgggtttt attggaagaa
    10441 aagaaggtat ggcggtgctt agtaatgtaa atttaaaata ttttgattgg acaagattat
    10501 gaaagtttta attattgaaa atgaaattta tctagcgcaa agcattagca ttaaactaag
    10561 tgatgctgga tatagctgtg aaattattaa ctcgtttgat gaatacaatg gtgaaaaata
    10621 ctatgacatt atactgcttt ctacaaatac taataatttt ctaaaagccg taggtcagtt
    10681 taaacatagt attattattt tgcttatttc ttatataagt acagatacag tttcaaatcc
    10741 tttgaaatta ggtgctagtg attatattca aaaacccttt atgatagaag agctgattag
    10801 aaaaataaag cattatcagg attttagaaa actttcaatc cttaataaag cttatcaaag
    10861 ctatatcaaa tcaagattag aaacaatcaa aattccagag tataattata aaaaattaaa
    10921 acttccattg atattaaaat ccaacaagca aagcagtgct gatgcttttg tttttaatta
    10981 tgcaaatgaa tgtgacatta ctctttcttt tattgattta acatctacaa attcagttga
    11041 aaaagttatg aaacttccca cagaaaacaa tctcttattt ttgagtaatt ttcaagcatt
    11101 aaaagcaaca gaaaaggaaa aactcctaga ttttatacaa aacaaaaatg ttattttgca
    11161 taccaattca aatacagatg atttaaaaat aaactgcatt aatttaaatg ataatgaaaa
    11221 aaatatcaat agcaatgaaa ttttaactat agatgagtat gtaaaatatg ttattataaa
    11281 ttaccaaaat atatttcctg atactgatct ttcaaaaaaa ttaggcattt cacgtaaatc
    11341 tttatgggaa aaaaggaaga aatatgaaat cagcaagaaa aaataaaaac attatcatag
    11401 atcaaaatga atttggcatc ttatcactta ttaaagaagg tttgctaggc acttgcactc
    11461 atttaatgaa tgaaaaagaa gtcaatgaaa tcattaaatc aggaaaattt aaaggagaaa
    11521 gctttcccta tcccttaagc tttgcaccaa aaaatgccga agaagcacta aatgatataa
    11581 aatctggcga tagaatcgat ctcatgctag atgaaaaagt agtaggacat atagatttta
    11641 aaagccaatt taaaaataat aaaaattttt ctgatatttt cagtcctaac acttgctctt
    11701 tagaagacat gggaacaact tgcataagtg gaaaaataga aatttataat tctcaaattg
    11761 aaaaaataaa agaaaatttt caacaaatca aaaacaatct taatgcacaa aaaattactg
    11821 ctatagtttc aagttttgat cctttgcatc gtgcccatga aagaatgttt cgttggacta
    11881 ttgataaagc agatttagtt gtaatttttc ttgtagaatc ttttgatgta aatgggtttg
    11941 aattcgaact taaagaagca tatttgaaaa aatttattca aaactatctt ccaccggata
    12001 gaattttcat ttttccatta aaaaatatta atatttttca cgctcattta aatcctggct
    12061 tagaaagcat tatcgcaaaa agtctaggtt gtaccaaact agtagtagga caaaatcata
    12121 caggacttgg aatgttttat gatgataatc aaccaaaaac catacttgat gatttttcca
    12181 aggactatgg catagaagtg attgttttac ctgaatttgt attttgcgat caatgtcgca
    12241 tgattgttag cacaagatct tgccctcatg gttgtcatca ccatttgcac tataattctc
    12301 agtctttaaa agatttacta agagcgggta tcattcctcc agcaattttc atgcgcaagg
    12361 aagtatctag tgttatttta acttctcttt ttccaaatag attaaaaaat atgcaaaaaa
    12421 tttataatga gctttttcca actgatggaa ttttagaata caaaaatgat gaagaatttt
    12481 atcaaaaact tttagaaatt catcaaatgt cttatatggt gtaataaaat gcaaaaatta
    12541 tttttaactt ttttttattc aggttctata aaaaaggcaa gtgggacttt tggtactatc
    12601 gctgctttaa tacctgcttt ttttatactt aaatatctcg ggatcaatac tttgttttta
    12661 ctaagtattt taatttttgt tgcaagtatt cgtgttatag atgattatga aaaaaaaaca
    12721 ggaattcacg atgataaaca catagttatc gatgaagttg ctggagtttt tcttgcttgt
    12781 gctattgcag caagtgttga aaactcgata gtcaattttg ttttggcttt tgttttattt
    12841 agactctttg acattacaaa accttctatt atcggcaaga tagataaaaa agtcaaaggc
    12901 ggactaggtg taatgcttga tgatatgcta gcaggattgt ttgctggact tttaagtgcg
    12961 gtaatttatg gatttttact taaatttaat ttagtttttt gggatataaa ttt
//
LOCUS       DBBXPZ010000045        12876 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.047, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000045 DBBXPZ010000000
VERSION     DBBXPZ010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12876
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.047"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            30..668
                     /locus_tag="ACJFD7_001089"
     CDS             30..668
                     /locus_tag="ACJFD7_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859909.1"
                     /translation="MKILSHRGYWKNKQEKNSIAAFDRSFLNSYGLETDLRDVAGGGI
                     VVSHDIASENCLKLEDFFKLYKKYNTNLPLALNIKADGLQIPLKKLIQKYKITNYFVF
                     DMSVPDALLYIDLNFNVFTRQSEYEKEPSFYDKACGIWMDEFYSHWIDKNTIKKHIDN
                     GKSVGIVSPELHKRDYKKEWQEYKQIEKELHIQEQLMICTDYPDEARRFFND"
     gene            661..1299
                     /locus_tag="ACJFD7_001090"
     CDS             661..1299
                     /locus_tag="ACJFD7_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HGG0859910.1"
                     /translation="MTKIKAIIFDMDGVLIEAKDWHYEALNRALKLFGMEITRYEHLT
                     TFDGLPTKDKLKMLSLERGLPKSLHSFINELKQQYTMEIVYSLCKPRFHHEYALSKLK
                     FEGYKMAVCSNSIRNSIKVMMKKSALENYLDFYISNEDVKKGKPDPEMYIKAIERLKL
                     NPKECMIVEDNENGIKAARASGANVMIVDEVSEVNYENIKNHICKFEEELKC"
     gene            1293..2018
                     /locus_tag="ACJFD7_001091"
     CDS             1293..2018
                     /locus_tag="ACJFD7_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HGG0859911.1"
                     /translation="MLNIVAPIAGKSYFFDNEKDGFPKPFIEICGKTMLEHFVKNYEN
                     VKNKRFIFILKEEDVKRYHLDDAINVLTNNQSKIIILKNETQGMVCSVLMAIDEINLN
                     DSLLIVNMDQIFEYDLNEVISELSLNDAGVLSFESVHPRWAYVKCDKNNFVLEAFEKK
                     PVSKNAIAGFYYFNKADFFVKSAFDMIKKDVNYEGKYFIASTLNELILQDKKIINISI
                     DKNRYFTFYSHAKINEYERIKNA"
     gene            2011..2346
                     /locus_tag="ACJFD7_001092"
     CDS             2011..2346
                     /locus_tag="ACJFD7_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HGG0859912.1"
                     /translation="MLKKLTEKYISAFNKKDINEVTNLLNENFVLEDPVVKRIEGKEE
                     CLKAIENIFKNCNKLSFSAKNIFQDKNTTFIEFILILDDIRLEGVDIIEWHDEKIVEL
                     RAYLDIPKG"
     gene            2349..2678
                     /locus_tag="ACJFD7_001093"
     CDS             2349..2678
                     /locus_tag="ACJFD7_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859913.1"
                     /translation="MKNYKLDKMIRGWFVGNFDPSVFKTNDVEVGVKEYKKGDTEEKH
                     HHKIATEITVIISGKVRMNDKIYSKGDIVMIYPGEATDFEALEDTTNVVVKLPGVNND
                     KYLGECQ"
     gene            2675..3400
                     /locus_tag="ACJFD7_001094"
     CDS             2675..3400
                     /locus_tag="ACJFD7_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HGG0859914.1"
                     /translation="MNIVIPMAGLGSRFAKAGFDKPKPFIDVLDKPMIVRVLENLKYK
                     DARYILIARKEHLTKEKKLVDEIKNNFNVEFIPIDKLTEGTACTVLYARKYINNDMPL
                     MIANSDQIVDINIADFINDSFKRGLDGSILTFIDKEKNPKWSFAKLNNDLVVEIKEKE
                     AISEFATVGIYFFNKGKIFIESAIDMIIENDRVNNEFYTCPVYNYAIKSGAKIGIYNI
                     DFSKMHGIGTPEDLEIFKAINKL"
     gene            3456..3854
                     /locus_tag="ACJFD7_001095"
     CDS             3456..3854
                     /locus_tag="ACJFD7_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD hydrolase family protein"
                     /protein_id="HGG0859915.1"
                     /translation="MKTLLIDLDGTLTIDEEHVDYIDKKPNFDLIQTLKEYKKQGFKI
                     NIFTSRNMRTFDGELEKIKFHTLPIIISWLKKHDVPYDEIIIGKPWCGYDGFYVDDKA
                     IRPSEFISLNYEQIKELLKKENPHKDGGNK"
     gene            3851..5374
                     /locus_tag="ACJFD7_001096"
     CDS             3851..5374
                     /locus_tag="ACJFD7_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004313391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular biosynthesis protein"
                     /protein_id="HGG0859916.1"
                     /translation="MILITSAKYLSSDFTLEFGKIPPSFLPLGNKRLYEYQIELFKNF
                     NQKFFLSLPNDFQLSKFDEKKLKELNIEILFAPNNLSLGESVVYCLNVCCVFDEKLYI
                     LHGDTFFKELAFKENSLQVAKVKENYDWAYLHNEFNVLSKTLEDDLILAGAYSFSHPQ
                     FLIKCIVESSYSFVDGMKSYSKVYAFDIIKNDTWLDFGLITSYFHSKKAVSTQRNFNN
                     IDISNGYIKKSSSWQEKIKAEINWFDNLPKELFIYTPKAITYEDSYEIEYLCNNTLAE
                     LYVFGKLPSYIWKRIFKSLKEFLDKLHSFKSNDKDINFNYKEKTLKRLQEFSKQSGIN
                     LHKNIVINSKSYPSILTLVDKLDFYINDMNEFSLIHGDFCFSNIMYDFRAGTIKTFDP
                     RGFDFSGKITPYGDKKYDFAKLVHSVFGLYDFIIAGFFECKVNSDNIEFFIEEDKNIL
                     DIQKEFLSIFNIDDNIKALTLHLFLSMLPLHNDFKEKQMAFLVNAFILYDKFFKESK"
     gene            5371..6099
                     /locus_tag="ACJFD7_001097"
     CDS             5371..6099
                     /locus_tag="ACJFD7_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004313392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HGG0859917.1"
                     /translation="MIIIFPMAGLSSRFIKVGYDKPKYMLDLKRNSVFFHAVNSFKKY
                     FKDFKFLFVYRDIDNTSNFIKEECKKLGIKSYESVRLEQETLGQAHTVRLGLERANIK
                     DDESILIFNIDTFRPNFSLPTALDFCKTDGYLEVFEADGEQWSFVLADENDNVIKTAE
                     KERISNLCSSGLYYFKKTKDFKEIFDRMKAENDFTKGELYIAPMYNYLIKKGLLIKYH
                     KISLDEIIFCGTPDEYEENLLRKV"
     gene            7043..7399
                     /locus_tag="ACJFD7_001098"
                     /pseudo
     CDS             7043..7399
                     /locus_tag="ACJFD7_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842501.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
     gene            7400..8305
                     /gene="cysD"
                     /locus_tag="ACJFD7_001099"
     CDS             7400..8305
                     /gene="cysD"
                     /locus_tag="ACJFD7_001099"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004781 - sulfate adenylyltransferase
                     (ATP) activity [Evidence IEA];
                     GO_process: GO:0000103 - sulfate assimilation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HGG0859918.1"
                     /translation="MTFNLTHLRQLESESIFIMREVISEFEKPAMLYSIGKDSSVMLH
                     LLQKAFYPATPPLPLVHVDTTWKFKEMIEFRDKRAKELGMELIVYTNPKGKEINISPF
                     IHGSNMHTDIMKTQALKQMLDLYEFDAVFGGARRDEEKSRAKERIYSFRNENHTWDPK
                     NQRPELWNLYNGRHKKGESIRVFPLSNWTELDIWQYIYLENIPIPSLYLTKKRPIVEY
                     MGTKILVDDDRMPKDLAKNAKEEMVRFRTLGCYPLTGAINSNATSVLDIIEELLLATT
                     SERQGRLIDSDEEASMEKKKQQGYF"
     gene            8305..9720
                     /gene="cysN"
                     /locus_tag="ACJFD7_001100"
     CDS             8305..9720
                     /gene="cysN"
                     /locus_tag="ACJFD7_001100"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysN"
                     /protein_id="HGG0859919.1"
                     /translation="MQSVENYLKEHENKELCRFITCGSVDDGKSTLIGRLLYDTKALF
                     SDQLSTLEKDSKKMGNAGDKLDFALLVDGLASEREQGITIDVAYRFFTSNKRKFIIAD
                     TPGHEQYTRNMATGASTADIAIILIDARKGVLKQTKRHSYIVSLLGIKNFIIAINKMD
                     LVSYEEKIFNNICKDYEKIIPYLQEDIQTHFIPICALNGENITQKSRNLSWYKGETLL
                     ALLDEIKINKIIQNDFIMPVQYVNRPHLNFRSFCGNIASGYIKLQDEVIVLPSMQKSK
                     IKSIITSDIKDLRALDENEIIPSQNEACVNMAVSLCLEDEIDISRGDILTSINHDLKM
                     SNAFEAMIIWMSQKQLDLNENYLIKRAHNLCNVKFENINYKKDINTFKEENTSNLILN
                     DIANCTLKLDKNLALKEYKDNKTLGSFIIIDKYSNETLAAGMIIKILNSQQSQRIYTQ
                     AEIELNTFIRKNYPEWGCRKI"
     gene            9717..11429
                     /locus_tag="ACJFD7_001101"
     CDS             9717..11429
                     /locus_tag="ACJFD7_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HGG0859920.1"
                     /translation="MKIIVGITLLILLILLIRNKIKPAVLFGSLAGFYYALGYLDFKT
                     WISSYTNDSLISLMLLLLISIAVEKTIIIEWASKFIIGKNYNLSLLRLGVITCAVSAF
                     LNNTAVVASFMGIVKNNKFQAPSKLLIPLSYFAIVGGVITLVGTSTNLIINSFVVQNG
                     LPSLKMFDFFYIGIALSIGMILVLMIFSKLLPNYENKDKNIKEHLIALKVLENSSLIG
                     KSIEENKLRNLEFLFLVEIQRNNQSITPVSHNEIINAKDTLIFSGNISQLETLNKFDG
                     LKLADGYELKESKFIDAIISPTSNLIGKSVKEANFRSKFDAAIISLQRGDVYIKKIGE
                     SVLQAGDRMILAVGKDFILRDNLAKNFYLLSNIKQNEKLDAKKSLMTIMAFLSVIVFS
                     ALNFISFTKALLICLGFLLLCKFIKLDEIKRRFPFDIFIIVGSSLAITKVLVDSGLAK
                     DLAQLITGFFGHYGVYGSFIGVYLLTLLLTEFITNNAAAALAFPIGFATAQALGVNPL
                     PFIFAVAYGASAGFMIPHGYQTHLMVSSLCDYKMTDFIKIGAIVSIVYSAIVLIGIPL
                     IFNF"
     gene            11437..12036
                     /gene="cysC"
                     /locus_tag="ACJFD7_001102"
     CDS             11437..12036
                     /gene="cysC"
                     /locus_tag="ACJFD7_001102"
                     /EC_number="2.7.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008338099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004020 - adenylylsulfate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000103 - sulfate assimilation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyl-sulfate kinase"
                     /protein_id="HGG0859921.1"
                     /translation="MDKNLTWHNTNITKEQRSKLKNQKPCVLWLTGLSASGKSTIANA
                     LEQKLHELGFHTYLLDGDNIRIGLNKDLGFDENSRVENIRRIAELCKLFVDSGLIILS
                     AFISPFKSDRALARSLVKKDEFIEIFVDTPLELCEKRDPKGLYKKARNGEIKNFTGID
                     SPYEKPQNPEIHLQNSKAKLNENVDIILNYLKENGYINA"
     gene            12029..12759
                     /gene="cysQ"
                     /locus_tag="ACJFD7_001103"
                     /pseudo
     CDS             12029..12759
                     /gene="cysQ"
                     /locus_tag="ACJFD7_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008337695.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008441 - 3'(2'),5'-bisphosphate
                     nucleotidase activity [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
BASE COUNT         4936 a         1489 c         2092 g         4359 t
ORIGIN      
        1 aaatttattt ttaaagtgag attaagctaa tgaaaatact ttcacaccgt ggttattgga
       61 aaaacaagca ggaaaaaaat tctattgctg cttttgatcg aagttttctt aattcatacg
      121 gtcttgaaac agatttaaga gatgtggcgg gggggggtat agtcgtatca catgatatag
      181 caagtgaaaa ttgtttaaaa ttagaagatt tttttaagct ttataaaaag tataacacaa
      241 atttgccttt agctttaaat ataaaggctg atggtcttca aattccactt aagaaactta
      301 ttcaaaaata taaaattaca aattattttg tatttgatat gtcagttcct gatgctttac
      361 tttatattga tttgaatttt aatgtcttta ctagacaaag tgaatatgaa aaagagccta
      421 gtttttatga taaagcttgt ggtatttgga tggatgagtt ttattcacat tggatagata
      481 aaaataccat aaaaaagcat attgataacg gcaaatcagt tggtatagtt tctccagagc
      541 ttcataaaag agattataag aaagaatggc aagaatacaa acaaatagaa aaagagttac
      601 atatacaaga acaattaatg atttgcactg attatcctga tgaggcaagg agattcttta
      661 atgactaaga taaaagccat tattttcgat atggatggag ttttgattga agctaaagat
      721 tggcattatg aagctttaaa tagagcttta aaactttttg gcatggaaat tactagatat
      781 gagcacttaa caacttttga tggcttgcca actaaggata aattaaaaat gctttcattg
      841 gaaagagggt tgcctaagtc gctacattct tttataaatg aattaaaaca gcaatacacc
      901 atggaaatag tttatagttt atgcaaacct aggttccatc atgaatatgc tttatcaaag
      961 ctaaaatttg aaggttataa aatggcagtt tgttctaatt ctatacgcaa tagcattaaa
     1021 gtaatgatga aaaaatcagc tcttgaaaat tatttagatt tttatatttc caatgaagat
     1081 gtaaaaaaag gaaaacctga ccctgaaatg tatatcaaag ctatagaaag attaaagcta
     1141 aatcctaaag aatgcatgat agtagaagat aatgaaaatg gtataaaagc agctagggca
     1201 agtggggcta atgtgatgat tgtagatgaa gttagtgaag taaattatga aaatattaaa
     1261 aatcatattt gtaaatttga agaggaattg aaatgttaaa tatagtggct cctattgcgg
     1321 gtaaaagtta tttttttgat aatgaaaaag acggttttcc aaagccattt atcgaaattt
     1381 gtggaaaaac tatgttagaa cattttgtta aaaattatga aaatgtcaag aataaacgtt
     1441 ttatttttat acttaaagaa gaagatgtaa agcgttatca tttagatgat gcaattaatg
     1501 ttttaactaa taatcaaagc aaaattatca ttcttaaaaa tgaaacacaa ggtatggttt
     1561 gttctgtttt gatggctatt gatgagatta atttaaatga ttctttgctt attgttaata
     1621 tggatcaaat ttttgagtat gatttaaatg aagttatttc agaattatct ttaaatgatg
     1681 cgggtgtttt gagttttgag agtgttcatc caagatgggc ttatgtaaaa tgcgataaaa
     1741 ataattttgt tttagaagct tttgaaaaaa aacctgtaag taaaaatgca atagcgggat
     1801 tttattattt taataaggct gatttttttg taaaatcagc ttttgatatg attaaaaaag
     1861 atgttaatta cgaaggaaaa tattttattg cttcaacatt aaatgaatta attttacaag
     1921 ataagaaaat tataaatatt tcaattgata aaaatcgtta ttttactttt tattctcatg
     1981 cgaaaattaa tgaatatgaa aggattaaaa atgcttaaaa aattaactga aaaatatatc
     2041 agtgctttta ataaaaaaga tatcaatgaa gtaacaaatt tgttaaatga gaattttgtt
     2101 ttagaagatc cagttgtaaa aagaatagaa ggcaaagaag aatgcttaaa agctattgaa
     2161 aatattttta aaaattgtaa taaactaagt tttagtgcta aaaatatttt tcaagataaa
     2221 aatacaactt ttatagaatt tattttaata cttgatgata tcagacttga aggtgtggat
     2281 attatagaat ggcatgatga aaaaatagtt gagttacgtg cttatttgga tattccgaaa
     2341 ggttgattgt gaaaaattat aaattagata aaatgattcg tggctggttt gtaggaaatt
     2401 tcgatccaag tgtttttaaa actaatgatg tggaagttgg cgtgaaagaa tataaaaaag
     2461 gtgatactga agaaaagcat catcataaaa tcgcaaccga aattactgtt attattagcg
     2521 gtaaagtaag aatgaatgat aagatatatt ctaaagggga tatagtgatg atttatccag
     2581 gtgaagctac agattttgaa gctttggaag acacaacgaa tgttgtcgta aaacttccag
     2641 gagttaataa tgataaatat ttaggagaat gtcaatgaat atagtgattc ctatggctgg
     2701 gcttggaagt cgttttgcaa aggctggttt tgataaacca aagcctttta tcgatgtttt
     2761 ggataagcca atgatagtta gagtgcttga aaatttaaaa tataaagatg caagatatat
     2821 tttaatagca agaaaagaac atttgactaa agaaaaaaag ttagttgatg aaattaaaaa
     2881 taattttaat gtcgaattta ttcctatcga taaacttaca gaaggaacag cttgtactgt
     2941 gctttatgca agaaaatata ttaataatga tatgccattg atgatagcaa attctgatca
     3001 gattgttgat attaatatag ctgattttat taatgatagt ttcaaacgag gtttagatgg
     3061 ttcaatattg acttttatag acaaggaaaa aaatcctaag tggtcatttg caaaattaaa
     3121 taatgattta gtagtagaaa taaaagaaaa agaagctatt agtgaatttg ctacagttgg
     3181 gatttatttt tttaataaag gaaaaatatt tattgaaagt gctatagata tgattataga
     3241 aaatgataga gttaataatg aattttatac ttgtcctgtt tataattatg ccataaaaag
     3301 cggtgctaaa ataggcattt ataatattga tttttccaaa atgcatggca ttggaacacc
     3361 tgaggatttg gaaattttta aagcaataaa taaattgtaa ggtttattgc atataatcat
     3421 aaaaatattt taaaattttt tatgattatg ggaatatgaa aactctactt attgatttag
     3481 atggaacttt aacaattgat gaagaacatg ttgattatat tgataaaaaa ccaaattttg
     3541 atttaatcca aactttaaaa gagtataaaa aacaaggttt taaaatcaat atttttacaa
     3601 gtcgcaacat gcgtacgttt gatggtgagc ttgaaaaaat taaatttcat accttaccta
     3661 tcattatttc ttggcttaaa aaacatgatg taccatatga tgagataatc ataggtaaac
     3721 cttggtgtgg gtatgatgga ttttatgtgg atgataaagc cattcgtccg tctgaattta
     3781 taagtttaaa ttatgagcaa attaaagagc ttttaaaaaa agaaaaccct cataaagatg
     3841 gcggcaataa atgatactca taacttctgc aaaatattta tcttctgatt ttactttaga
     3901 atttgggaaa atccctccat ctttcttacc gcttggtaat aaaagattgt atgaatatca
     3961 aatagagctt tttaaaaatt ttaatcaaaa atttttttta tctctaccca acgattttca
     4021 gttaagcaaa tttgatgaga aaaagttaaa agaacttaat attgaaattt tatttgcgcc
     4081 aaataattta tctttaggtg aatctgtggt ttattgttta aatgtttgct gtgtttttga
     4141 cgaaaaactt tatattttac acggggatac ttttttcaaa gaacttgcat tcaaagaaaa
     4201 ctctttacag gttgcaaaag ttaaggaaaa ttatgattgg gcttatttgc ataatgaatt
     4261 taatgtatta tcaaaaacat tagaagatga tttgatttta gcaggagctt atagtttttc
     4321 tcatcctcag tttttgataa aatgtatagt tgaaagtagt tattctttcg tggacggcat
     4381 gaaatcttat tctaaagttt atgcttttga tattataaaa aatgatactt ggcttgattt
     4441 tggccttata acaagttatt ttcactccaa aaaagctgta agcacgcaaa gaaattttaa
     4501 caatatagat atttcaaatg gctatataaa aaagtcttct tcttggcaag aaaaaataaa
     4561 agcagagatt aattggtttg ataatttgcc taaagaacta tttatctata cccctaaagc
     4621 tataacttat gaggatagtt atgaaataga atatctttgc aataatactt tagcagaatt
     4681 atatgttttt ggaaaattac ctagttatat ttggaaaaga atatttaaat ctttaaaaga
     4741 atttttagat aagttgcatt cttttaaaag caatgataaa gatataaatt ttaattataa
     4801 ggaaaaaact ttaaaaagat tgcaagaatt tagtaaacaa agtggaatta atttgcacaa
     4861 aaatattgtt atcaattcaa aatcttatcc aagtattttg actttagtag ataagcttga
     4921 tttttatata aatgatatga atgaattttc attaatacat ggagattttt gtttttcaaa
     4981 tattatgtat gattttagag ctggtactat aaaaaccttt gatccaagag gatttgattt
     5041 tagtggaaaa attactcctt atggagataa aaaatatgat tttgcaaaat tagttcattc
     5101 tgtttttggg ctttatgatt ttattatcgc aggatttttt gagtgtaaag ttaatagcga
     5161 taatatagag ttttttatag aagaagataa aaatattttg gatattcaaa aagaattttt
     5221 aagtatattt aatatagatg ataatattaa agctttgact ttgcatttgt ttttatctat
     5281 gttacctttg cataatgatt ttaaagaaaa acaaatggct tttttagtaa acgcttttat
     5341 actttatgat aaatttttta aggagagcaa atgattataa tctttcctat ggcgggacta
     5401 agtagtcgtt ttataaaggt aggctacgat aaacctaaat atatgcttga tttaaaaaga
     5461 aatagtgtat tttttcacgc tgtaaatagt tttaaaaaat attttaaaga ttttaaattt
     5521 ctttttgtgt atagagatat tgataatact agcaatttta taaaagaaga atgtaaaaaa
     5581 ctaggaataa aatcttatga aagtgtaaga ttagaacaag aaactttagg tcaagctcat
     5641 acggtaagac ttggactaga aagggcaaat attaaagatg atgagagtat tttgattttt
     5701 aacatcgata cctttaggcc aaatttttct ttacctactg ctttggattt ttgtaaaact
     5761 gatggttatt tagaggtatt tgaagcagat ggagaacaat ggagttttgt tttagctgat
     5821 gaaaatgaca atgtaattaa aaccgcagaa aaagaaagaa tttcaaatct ttgtagtagt
     5881 ggactttatt attttaaaaa aacaaaagat tttaaagaaa tttttgatag aatgaaagct
     5941 gaaaatgatt ttaccaaagg agaattgtat atagctccta tgtataatta tcttataaaa
     6001 aaaggcttgc ttataaaata tcataaaatt tcattagatg aaattatatt ttgcggaacg
     6061 cctgatgagt atgaagaaaa tttattaaga aaggtgtaat ttgaagaaaa agttggctat
     6121 acattttttt ggttttatta gaacatttag agatacttat aataatttta aattgaatat
     6181 tttagatgtc aattctcagg attatgaaat tgatatattt atacatactt gggataaata
     6241 taattccgta gatacctcaa aagagcagtt taatttatgg catcaaaaaa tagattatta
     6301 tcctacaatg aatgaaaaaa aaattaccaa taaagatcaa aaggatatta tcgatttata
     6361 tcaacctaaa aaaatattaa ttgaaaaact agaaaaaggt gtttatggtc attttatcac
     6421 tttaaatcaa gtttttaatt taagaactac ttatgaaaaa gaaaaaggtt ttaagtatga
     6481 tgcattatta tatacacggt gtgatgtaat gtttaaaaat cctattagaa ttttaggata
     6541 tattgattat tggaaaaata atccaactct tgatacaaaa ataatttggt gtggtcactc
     6601 ttctttttca agaatggcta tagctgatcc tagaattgta acagagtgta atattttttg
     6661 gtttactaaa tataatataa atcccaatga tatgtatcat aattgtccta atgatatcaa
     6721 taaattttta tggataggaa tcgattatct tttaaacaga gattttaaaa tatggagaga
     6781 gcaatatatc ggtgattata aagcgaatga attgatttat ataagaaaaa atgttttgat
     6841 gcaaaaagat aacgaaatta aaaaattaaa atcaaacaat aagcttctag aggataaatg
     6901 gacaaaaaaa caaatcttag aattagccaa tctagaacag gatttaatta ttaaaaaatt
     6961 agaaagtaaa aaacttgcta aatctttagg tctaaaaatg agcataatta accctaaaat
     7021 tacttttatt caagctaatt cagccaaagc tcgtattcaa aatcatctat cttataaatt
     7081 aggacaagct ttgatagaaa attcaaaaag tatatttggc tatataagaa taccttatgt
     7141 attatcttat ataaaagata agcacaaatt tgaacaaaaa gcctatgaag aaaagataaa
     7201 agaaaatcca aatttagctt taccaccttt agaaacttat cctgattata atgaagcttt
     7261 aaaagaaaaa gaatgtttta cttataaatt aggagaagct ttaatacaag ctaataagaa
     7321 ttggtatggg ggggggtata tcaaatttat attcaaagat gtgcctaggt tgaagagaga
     7381 gtttgagaaa ggggaataaa tgactttcaa tcttacccat ctaagacaac ttgaaagtga
     7441 gtctattttc atcatgcgtg aagtaatatc tgaatttgaa aagccagcta tgctttatag
     7501 cataggtaaa gatagttcag tgatgcttca tcttttacaa aaagcttttt atccagccac
     7561 tcctcctttg cctttagtgc atgtagatac gacttggaaa tttaaagaaa tgatagaatt
     7621 tcgtgataaa agagctaaag aactcggtat ggaacttatc gtttatacta atccaaaagg
     7681 caaagaaata aatatatccc cttttataca tggctcaaat atgcatacag atattatgaa
     7741 aactcaagct ttaaagcaaa tgcttgattt atacgaattt gatgctgttt ttggaggagc
     7801 tagacgtgac gaggaaaaat cacgagcaaa agagagaatt tattccttcc gtaatgaaaa
     7861 tcatacttgg gatcctaaaa atcaacgccc agaactttgg aatttatata atggacgcca
     7921 taaaaaagga gaatccataa gagtttttcc gctgagcaat tggactgaac ttgatatttg
     7981 gcagtatata taccttgaaa atattcctat accaagtctt tatcttacca aaaaaagacc
     8041 tatagttgaa tacatgggaa caaaaatttt agttgatgat gatagaatgc caaaagattt
     8101 agcaaaaaat gctaaagaag aaatggtaag atttagaact ttgggttgtt atcctctaac
     8161 cggagccata aattcaaatg ccacaagtgt tttagatatc atagaagaac tacttctagc
     8221 tacaaccagt gaaagacagg gaagacttat agatagtgat gaagaagcta gcatggaaaa
     8281 gaaaaaacaa caaggatatt tttaatgcaa agtgtagaaa attatctaaa agaacatgaa
     8341 aataaagaac tttgtcgttt tatcacttgt ggtagcgttg atgatggaaa atccactctt
     8401 ataggaagat tactttatga tactaaagct ctttttagtg atcaattaag caccttagaa
     8461 aaagatagta aaaaaatggg aaatgccgga gataaacttg attttgcact tttagtagat
     8521 gggcttgcaa gcgaaagaga acaaggcatt accatagatg tggcttatag attttttacc
     8581 agtaataaac gcaaatttat tatagctgat accccagggc atgaacaata cactagaaac
     8641 atggcaacag gagcaagtac agcagatatt gctattattt taattgatgc aagaaaaggg
     8701 gttttaaagc agactaaaag gcattcttat atagtgagct tacttggtat taaaaatttt
     8761 atcattgcca ttaacaaaat ggatctagtt tcttacgaag aaaaaatctt taataatatt
     8821 tgtaaagatt atgaaaaaat catcccttat ttgcaagaag atatccaaac acactttatt
     8881 cccatttgtg ctttaaatgg tgaaaatatc actcaaaaaa gtagaaattt atcttggtat
     8941 aaaggtgaaa ctctacttgc acttttagat gaaattaaaa taaataaaat cattcaaaat
     9001 gattttatca tgcctgtgca gtatgttaat cgtccgcatt taaattttcg tagtttttgc
     9061 ggaaatatag caagtggtta tataaaatta caagatgaag ttatagtctt gccttctatg
     9121 caaaaatcca aaattaaaag tatcattaca agtgatatta aagatttaag agctttagat
     9181 gaaaatgaaa tcattccaag tcaaaatgaa gcttgtgtta atatggccgt aagtttatgt
     9241 ttagaagatg aaatcgatat ttctagaggc gatattttga catctatcaa ccatgatctt
     9301 aaaatgagca atgcttttga agctatgatt atatggatga gtcaaaaaca attagatctt
     9361 aatgaaaatt atcttataaa aagagctcat aatctttgca atgttaaatt tgaaaatatt
     9421 aactataaaa aagatatcaa tacttttaaa gaagaaaata cctcaaattt aatacttaat
     9481 gatattgcaa attgtacttt aaaactagat aaaaatttag cacttaaaga gtataaagat
     9541 aataaaacct taggatcatt tattatcatc gataaatata gcaatgaaac cttggccgca
     9601 ggtatgataa taaaaatttt aaattcacag caaagccaaa gaatttacac tcaagctgaa
     9661 atagaactta acacttttat aagaaaaaac tatccagaat gggggtgtag aaaaatatga
     9721 aaatcatagt aggtatcacg cttttaattc tacttatatt gctcatacgc aacaaaataa
     9781 agcctgctgt tttatttgga agtttggcag gattttacta cgctttaggt tatcttgatt
     9841 ttaaaacttg gataagttct tatacaaatg attctttaat ttcactcatg ttgctacttt
     9901 taatttctat cgctgttgaa aaaactatca ttatagaatg ggcaagtaaa tttatcatag
     9961 gaaaaaacta taatctttct cttttgagat taggtgtaat tacttgtgcg gtttcagcct
    10021 ttttaaacaa taccgcagta gtagcaagct ttatgggtat agtaaaaaac aataaatttc
    10081 aagctccttc aaagctttta atccctcttt cttattttgc catagtaggc ggtgttatca
    10141 ctcttgtggg aacttctaca aatttaatca tcaattcctt tgtggtacaa aatggactgc
    10201 caagtcttaa aatgtttgat tttttttata taggtatagc tttaagcata ggaatgattt
    10261 tggttttgat gatttttagt aaattattac ccaattatga aaataaagat aaaaatataa
    10321 aagaacattt aatcgcctta aaagtcttag aaaatagctc tttaataggc aaaagcatag
    10381 aagagaacaa acttagaaat ttagagtttt tatttttggt agaaattcaa agaaacaacc
    10441 aaagcatcac tcccgtttca cataatgaaa ttataaatgc aaaagataca cttatattta
    10501 gcggaaatat ttcacaactt gaaactttaa ataaatttga tggcttaaaa cttgcggatg
    10561 gttatgagtt aaaagaaagt aaattcatcg atgcaattat ttctccaact tctaatttaa
    10621 ttggaaaaag cgtaaaagaa gctaatttta gatctaaatt tgatgcagct attatttctt
    10681 tacaaagagg agatgtatat atcaaaaaaa ttggcgaaag tgttttgcaa gctggagata
    10741 gaatgatttt agctgtgggt aaagatttta tcttaagaga taatttggct aaaaattttt
    10801 atttactttc aaatatcaaa caaaacgaaa aacttgatgc taaaaaaagc ttaatgacca
    10861 taatggcttt tttaagtgtt attgtttttt cggctttaaa ttttatctct tttaccaaag
    10921 ctttgcttat ttgtttaggc tttttactac tttgcaaatt tatcaagctt gatgaaataa
    10981 aaaggcgttt tccttttgat atttttatca tagtaggctc ttctttagca attactaaag
    11041 tacttgtaga tagcggactt gccaaagatt tagctcaact tatcacaggt ttttttggac
    11101 attatggagt ttatggaagt tttataggag tttatctttt aaccctactt ttaaccgaat
    11161 ttattaccaa taacgctgct gcggccttag ctttccctat aggttttgcc acagctcaag
    11221 ccttgggagt aaatcctttg cccttcatct ttgctgtagc ttatggtgct agcgctgggt
    11281 ttatgatacc acatggatac caaactcatt taatggttag ctcgctttgt gattacaaaa
    11341 tgacagattt tataaaaata ggtgccattg tttctatcgt atatagtgct atagttctca
    11401 taggcatacc tttaatcttt aatttttagg atatttatgg ataaaaatct tacttggcat
    11461 aacacaaata tcaccaaaga acaaagatca aaacttaaaa atcaaaaacc ttgtgtactt
    11521 tggctaacag gacttagtgc aagtggaaaa tcaaccattg ccaatgcttt agaacagaaa
    11581 ttacacgagc ttggttttca tacgtatttg cttgatgggg ataatattcg cataggttta
    11641 aataaagact taggctttga tgaaaactca agagtggaaa acataagacg catagcagaa
    11701 ctttgcaaac tttttgttga cagtggtttg attatattaa gcgcttttat ctcacccttt
    11761 aaaagtgata gagctttagc aagatctttg gtaaaaaaag atgaatttat agaaattttt
    11821 gtagatacac ctttagaact ctgtgaaaaa agagatccta aaggacttta caaaaaggca
    11881 agaaatggag aaataaaaaa tttcacaggt atagacagcc cttatgaaaa acctcaaaat
    11941 cctgaaattc atttgcaaaa ttccaaagcc aaacttaatg aaaatgtaga tataatctta
    12001 aactatctta aagaaaatgg atatattaat gcttgaaaaa ataaatttag atgagattaa
    12061 aagcatagtc ttaaaggctg gaaaagctgt tatggaaatt tataataaag attttaaggt
    12121 ttcttataaa gatgataatt ctcctttaac tgaagctaat cttgtatgta attctataat
    12181 ttgcaaagaa ctagctaaat ttaatctccc tatactctcg gaagaaaata aaaaaatttc
    12241 ttttcaagaa cgtaaacatt gggaatattt ttggtgtatc gatcctatag atgaaactaa
    12301 agaatttatt aaaaaaatgg agaatttacc atcaatatgg ctctaattta caaagatact
    12361 cctgtgcttg gagtagtcta tgctcctgct attataccaa aaaagggttt tggggctttt
    12421 aaaaacgaaa tggttttacc tttaaaactt aatcatcaaa cttataaaat agttgctagc
    12481 aaatctcata tgagcgaaga aactaagaaa tttatagata atttacaaac accattaaaa
    12541 aaagaacttg taactatggg cagttctttg aaaatttgtc ttgttgctaa tgatgaagcg
    12601 aaatgctatc cccgtctttc tcccactatg gaatgggata tagccgccgc tgatgccata
    12661 gcaagggaga gtagaaaaat aatttataaa tatcaaaata aaaaagtttt attatataat
    12721 aaagaaaatt taagaaatcc ttattttata gcggggtaaa gatgacttgt tatttgcaca
    12781 taggaatgcc aaaaacagga actacaagca tacaaacatt cttaactaaa aataaatttt
    12841 tactcttaaa acaaaattat ttataccctg aaagta
//
LOCUS       DBBXPZ010000046        12813 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.048, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000046 DBBXPZ010000000
VERSION     DBBXPZ010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12813)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12813)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12813
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.048"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            68..255
                     /gene="kdpF"
                     /locus_tag="ACJFD7_001104"
                     /pseudo
     CDS             68..255
                     /gene="kdpF"
                     /locus_tag="ACJFD7_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344095.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA];
                     GO_process: GO:0043462 - regulation of ATP-dependent
                     activity [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
     gene            265..468
                     /locus_tag="ACJFD7_001105"
     CDS             265..468
                     /locus_tag="ACJFD7_001105"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: protein motif:HMM:NF015753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HGG0859922.1"
                     /translation="MLEILITLIIAFILALIFGNYLYKIASCKKTIFDFIFNPIDNLI
                     YKICAIDRKNMTWQKLFFAFNCF"
     gene            561..971
                     /locus_tag="ACJFD7_001106"
                     /pseudo
     CDS             561..971
                     /locus_tag="ACJFD7_001106"
                     /inference="COORDINATES: protein motif:HMM:NF015753.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
     gene            943..1176
                     /locus_tag="ACJFD7_001107"
     CDS             943..1176
                     /locus_tag="ACJFD7_001107"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: protein motif:HMM:NF015753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HGG0859923.1"
                     /translation="MGGGGFFGANSSMPFENPALLTNFLQILSMMLIPSACVVAFGLM
                     VYHRKERQGFALMGKEGELFLVQWGLFLSFLCF"
     gene            1143..1961
                     /locus_tag="ACJFD7_001108"
     CDS             1143..1961
                     /locus_tag="ACJFD7_001108"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: protein motif:HMM:NF015753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HGG0859924.1"
                     /translation="MGIIFIISLLLIYFSEKMSNPNLDSLGLNANLGNLEGKEIRFGT
                     DGSSLFSAVTTAFTTGSVNNMHDSLNPLSISATLLNMMLNVAFGGEGVGLMNMIIYVL
                     LTVFICALMIGRTPEFLGKKIESAQMKLIALVILIHPLLILVLSALALVFAKDSISNP
                     SFHGLAQILYEFSSSAANNGSGLEGLKDDNLFWNLSTAFAMFCGRYLVLIAQLAIAGS
                     LLAKNTQENTANSLKTDNLTFMFVLVCIIYIFAALTFFPVLTLSSVAEYLSLWH"
     gene            1971..4022
                     /gene="kdpB"
                     /locus_tag="ACJFD7_001109"
                     /pseudo
     CDS             1971..4022
                     /gene="kdpB"
                     /locus_tag="ACJFD7_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344096.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
     gene            4024..4633
                     /gene="kdpC"
                     /locus_tag="ACJFD7_001110"
                     /pseudo
     CDS             4024..4633
                     /gene="kdpC"
                     /locus_tag="ACJFD7_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861367.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpC"
     gene            4636..6222
                     /locus_tag="ACJFD7_001111"
     CDS             4636..6222
                     /locus_tag="ACJFD7_001111"
                     /inference="COORDINATES: protein motif:HMM:NF014728.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4118 domain-containing protein"
                     /protein_id="HGG0859925.1"
                     /translation="MQRQSPEQILKKLEVKAKEEEKNKLAKLKIFLGYAAGSGKTYAM
                     LSEARTLRDNGVDVVLGYIEPHDRPETMALAQGFESIANLEIPYKNIVLKEFDLDATL
                     KRKPALVLVDELAHTNAKGLRNEKCFQDIEELLKAGIDVYTTLNIQHLESLNDLVANI
                     SKIEVKERVPDRIFDEADQVELVDIEPNKLLKRMQDGKIYKEKQAKLALENFFRQERL
                     IALREIALRRLASRVNLRASEQRLINDDLAYHTGEHILVCINASNAKVIRAAARLALA
                     FHAKLSALYIKNPNIKEAKALEENIELAKSFDAEIISVYDDIARQIAEYSSLSNVSKI
                     VLGKNKDKKKFKEEIFEAVAKKAPDIDLYLVNENQISTPKIRSKKSFDFLGFLKITGV
                     LLLATFIAFVFHKFNTQPSNIVMIFILAVFASSFISDNKIFTFYSSLVSVLIYNFFFL
                     EPIFSLKVHDSGNIITFTTMFIVGFLTAVFTRRLKLQSKELTKRAYRTAILLENSENL
                     ARVKSKQELWEQLGNQALKL"
     gene            6303..6455
                     /locus_tag="ACJFD7_001112"
     CDS             6303..6455
                     /locus_tag="ACJFD7_001112"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859926.1"
                     /translation="MLKNCFSADEIAIAQWVATNKERAGVCTNTLPNANAMYLPIEDG
                     KKLKGL"
     gene            complement(6557..8530)
                     /gene="uvrB"
                     /locus_tag="ACJFD7_001113"
     CDS             complement(6557..8530)
                     /gene="uvrB"
                     /locus_tag="ACJFD7_001113"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HGG0859927.1"
                     /translation="MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTF
                     TMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRT
                     DVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
                     GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDEL
                     DAMYHYNVLENKKGKDLKRFILYPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENK
                     LVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPYTLFDYFAIKNRKFL
                     VIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFV
                     SATPAPLELELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVL
                     VTVLTKKLAEELTRYYLELGIKVKYMHSDIDAIERNEIIRGLRSGAFDMLIGINLLRE
                     GLDLPEVSLIAIMDADKEGFLRSATSLIQTMGRAARNVNGKVLLFCKKITKSMQEAMD
                     TTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKL
                     VKELRKQMLEAAKALEFEKAAAIRDEINKLRDL"
     gene            8684..8914
                     /locus_tag="ACJFD7_001114"
     CDS             8684..8914
                     /locus_tag="ACJFD7_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859928.1"
                     /translation="MFDEKIINTMTDKVNELIEKYNEVCEANEALRNELVSVKAQNEA
                     KSNQIMRLEEELKSRNIESEDIYKKIEAVLGR"
     gene            8904..9146
                     /locus_tag="ACJFD7_001115"
     CDS             8904..9146
                     /locus_tag="ACJFD7_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859929.1"
                     /translation="MADNLKQVIVNVNAKDFIVKCSEEFANFLEDDIALISGGTKKIE
                     LKRFVDAFVKKSYENYILERELKKLIKAINEELPTK"
     gene            9143..9580
                     /locus_tag="ACJFD7_001116"
     CDS             9143..9580
                     /locus_tag="ACJFD7_001116"
                     /inference="COORDINATES: protein motif:HMM:TIGR02532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HGG0859930.1"
                     /translation="MNKAFTLLELVFVVLILGILSSLSLSFINTTKDEVKILKLKMDY
                     EMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEKLFYCLNDCDYSLLDTPIYSDFK
                     SWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI"
     gene            9562..11415
                     /locus_tag="ACJFD7_001117"
     CDS             9562..11415
                     /locus_tag="ACJFD7_001117"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0032508 - DNA duplex unwinding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HGG0859931.1"
                     /translation="MQRSDIRYYELAICGLYLDNLTFHSFDEIKPLTQVLVDLKSKKN
                     LKAIVLKECQKPDFKTIEIKEITGYFLTPLQFELANFIVYYYASKLGFVLGFFETSPK
                     YECHKMFFKDTPKLSNQQQNALSFLQKENNSLLFADTGSGKTEIYISLIKECLEQGKQ
                     ALLLMPEIALTPQMQKRLEVYFKDNFFLWHSKISKKKKQEYLERFCKGEVLLVAGARS
                     ALFLPFRNLGLIVVDEEHDNSYKASNQPFINARDLALFLGQKNNIKVVLGSATPSLTS
                     FYKQKSFRLKGTFFESKKHFLYDENELGITPMLLSELEKSLKHQKQAIVFLPTRANFR
                     QIICKDCGETIKCPFCSIAMSMHKKKNVLKCHYCNYTSLIEQNCPSCKGEMLEARKMG
                     TAELLELLQNALPLAKIAKFDSDEITSVKKLNIILKDFNENKIDILIGTSMLAKGHDY
                     HSVDLSVILGLDEYLLRPSFRASEETLALAMQVAGRAGRKGEARVLLQTKNRAFFERY
                     IENYDAFLKDELENRKDLYPPFKRLLRVLIEDKDQKSAQKLCEKFASQFRNIKQVELV
                     GYGICGVEMLYGKYRFYLLLRSENHKALVAIENYILQFKNASADIDPIDFV"
     gene            complement(11425..>12813)
                     /locus_tag="ACJFD7_001118"
     CDS             complement(11425..>12813)
                     /locus_tag="ACJFD7_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HGG0859932.1"
                     /translation="NLLLYIKNNLTPTLAQILLQALKNSNNEKFFTFVLKNIETICTW
                     LNSNEFRDRYLSTKHPYPPLINPNFIEIDSSRHCAELAWDLNLPLPKHYKFIYISPHG
                     VGAAAFLRYLNQCCDVTCFASWVLPPDSKERYCINYMCLNDNTIAQYAINISEINLPY
                     FDKYLSLLDFNSKIICGVRDPIGLLKHSWGRDWSKVLRNYPPEFNLTYDWRYYINYLT
                     HQNHKIKIDINELQQGVFIISYLLKYFNKDNVYYLDMEEIRQSKAFDTMNLLAINFNF
                     TPPHKDKLDLFKIKEFRGYIRYLFPITLYANSKDINNTFYLNTPKNNKNFNIDRTSSI
                     PIILDRKHINHEKIDIIQEIIKNDLCNDMGVYIDKNDFKQLEQNNLLFSTIKHYLYDF
                     LYQIKITIDETESKMMKEKDVIDYFIKNKSLIYTFFNIFENELNHLKQTHPHIIDSWK
                     YYKEFEKIYKDK"
BASE COUNT         4344 a         1666 c         2222 g         4581 t
ORIGIN      
        1 aatcataaaa ttagtattaa tcaaaatata agcttaacaa ggataggata aatcctattt
       61 tgaatcaatg agaaagggct atcctatgga tgttatcttt gctttacttc tacttttagc
      121 ttttggtagt ttatggtttt ttatccgttt ttgtgaaatt caaactagga caagcggatg
      181 atatttttac tagttttaag cttaatactt gctctttatt tattttatgc tctattatat
      241 cctgaaaaat tttaaaggaa aaatatgcta gaaattttaa taacactgat tatagctttt
      301 atattggctt taatttttgg aaattatctt tataaaattg caagctgtaa aaaaactatt
      361 tttgatttta tttttaatcc aattgataac ttaatttata aaatttgtgc aattgataga
      421 aaaaatatga cttggcaaaa attattcttt gcatttaatt gcttttaatg ccttagtggc
      481 tattttttct ttcgtgattt tttatttaca agataaactt ttttttaaat cctaattcga
      541 taaattctat gaaaggggat ttgaatttaa atactgtaat tagttttatt acaaatacaa
      601 accttcagca ttgtagtgga gagagtgctt taagtttgct ttcgcaaaat acaggcattt
      661 tacttgctat gtttgtttca agtgcgagtg gatattctgc ttgcatggct ttttgtcgtg
      721 ctttatgtag tatgcaaatg ggaaattttt atgaagattt tacgcgtatt attacgcgtt
      781 tgatgttgcc tttaagtttt attttggctg taatttttat ctctgaaggc gtggtgtaaa
      841 attatcacgc aaattttagc gtgcttactt tagaaaataa atttcaaagc attgccacag
      901 gtcctgttgc agctcttgag tctataaaac atttagggac aaatgggggg gggtggtttt
      961 tttggtgcta attcaagcat gccttttgaa aatcctgctt tacttacaaa ttttttgcaa
     1021 attttatcca tgatgcttat tcctagtgcc tgtgttgtag cttttggatt gatggtttat
     1081 catagaaaag aaagacaagg ttttgctctt atgggaaaag aaggggagtt atttttggtg
     1141 caatggggat tatttttatc atttctttgc ttttaattta ttttagcgaa aaaatgtcaa
     1201 atccaaattt ggattctttg ggtttaaatg caaatttggg aaatttggaa ggtaaagaaa
     1261 taagatttgg cacagatggt tcgagtttat ttagtgctgt aactactgct tttactacag
     1321 gaagcgtcaa taatatgcac gatagtttaa atccattaag tatcagtgct actttgctaa
     1381 atatgatgct aaatgtagct ttcggtggcg aaggagtagg gcttatgaat atgattattt
     1441 atgtgctttt aaccgtgttt atttgtgcat taatgatagg tagaactcca gaattcttgg
     1501 gtaaaaaaat agaaagcgca caaatgaagc ttatagcttt ggtaattctt atccatcctt
     1561 tattaatcct tgttttaagt gcattagctc ttgtttttgc aaaagatagt ataagcaatc
     1621 ctagctttca tggcttggct caaattttgt atgaatttag ttcttcggca gcaaataatg
     1681 gttcaggact tgaaggttta aaagatgata atttattttg gaatttaagc acagcttttg
     1741 ctatgttttg tgggcgttat ttggttttaa tagctcagct tgctatagct ggatcgcttt
     1801 tggctaaaaa tacacaagaa aatactgcaa attctttaaa aacggataat ttaactttta
     1861 tgtttgtgct tgtttgtatt atatatattt ttgctgcact cacttttttt ccagtgctta
     1921 ctttatcaag cgttgcagaa tatttatctt tatggcatta aggagagtca atgtctaaaa
     1981 aacaaaataa actcattaca aaagaaattt taaataatgc cataaaaaaa ggagcatttt
     2041 taaaatttga tccacgcttg atggtaaaaa atcctgttat gtttatggtg gaagttggat
     2101 cgattcttac tttgatttta agtatttttc ctactttatt taatggaaat tctgatgaaa
     2161 gaatttataa catcttaatc acttttattt tatttataat cttgcttttt gcaaattttg
     2221 cagaaagtat tgcagaagga aggggtaaag cccaagcagc taccttaaga caaagcaaaa
     2281 aggattctaa agctagacgc ataaaaagtg atggcagtga agaaatgctt aattctagcg
     2341 agttaaaaat aggtgatata gttttagtta aagcaggtga acttatacct aatgatggag
     2401 aaattataga aggtgctgca agtgttgatg aatcagctat tacaggtgaa agtgcacctg
     2461 ttatgcgtga agcgggcggt gatttttctt ctgttacagg tgggactacg gttttaactg
     2521 attttttaaa gattaaaatt ttagttggag ctggggaaag ttttttagat aaaatgatca
     2581 atcttgtaga aggtgctgca cgtcaaaaaa ctccaaatga aattgctctt aatactcttt
     2641 taattgcact tagtttgagt tttttggtgg tggttgtaag tttatatcct tttatacaat
     2701 ttttaggcgt gagtttgcct atttcatggt tagtagcatt gcttgtatgt cttattccta
     2761 caactatagg ggggggggct tttatcagct ataggaatag caggtatgga cagggtaacg
     2821 cgttttaatg tgatcgcact ttcaggcaag gctgttgaaa gttgtggtga tgttgatact
     2881 atgattttgg ataaaacagg aacgattact tttggaaacc gtttggcaaa tgaattttat
     2941 gaagtccaag gtataagtaa agaagaaatg attaaagctt gtgttttatc ctctttaaaa
     3001 gatgaaactc cagaaggtaa aagcatagtt gcattggctt aaaaaatggg ttatgaatta
     3061 gaaggtaatg atattaaaga atttatcgaa tttagcgctc aaaatagaat gagtggtgtg
     3121 gatttgcaag ataatataaa aattcgcaaa ggtgcttttg atgctataag agcttatata
     3181 agcgaaatga atggaaaaat tcctagcgat ttagaaacta aggtaatgga aatttcaaat
     3241 cttggtggta ctcctttggt agtgtgtaaa aatgaaaaaa ttttaggagt gatttatcta
     3301 aaggatacag taaaaccagg acttaaagag cgctttgatg agcttagaaa aatgggcata
     3361 aaaactttaa tgtgtaccgg agataatcct ttaacagcag ctactatagc caaagaagca
     3421 gggcttgatg gatttatagc agaatgcaag cctgaagata aaatagaagc tattaaaaaa
     3481 gaacaagccc aaggtaaaat agtagccatg acaggagatg gaaccaatga tgctccagct
     3541 cttgcacaag ctgatgtagg tatagctatg aacttaggaa ctcaagcagc caaagaagca
     3601 gccaatatga tagatcttga ttctaatcct actaaaattt tagaagtagt tgaaatagga
     3661 aaaggtttgc ttattactag aggcagtctt acaactttta gtatggcaaa tgatattgct
     3721 aagtattttg ctattttacc tgctatgttt agtgtggttt tacctcaaat gcaaatttta
     3781 aatattatgc atttagctac cccgcaaagc gctattttat cagcacttat ttttaatgct
     3841 attattatac ctttgctcat cctattgcta tgcgtggagt taaatttaag cctatgaaaa
     3901 gcgagcattt gcttttaaga aatttaagta tttatggttt aggtggtatg atcgcacctt
     3961 ttatagggat aaaaataatt gatattccta cagcttggat acttagaatt ttaggagtgt
     4021 gatatgctta gaactttgct tagttttttt gtggtaatgc taatattgcg tactcttatt
     4081 tatccttttg ctttaaatac agttgcaaaa tttatttttc cttatcaatc aagtggaagt
     4141 ttagtagata aagaaggtcg tccgactttg gatgtaagca aagcggtagg ttcaaagctt
     4201 ttgggtcaag attttaataa accttatttt ctacattcaa gaacatctgt gtcaaattac
     4261 aatacaagcg atacaaatga aagcagtgta aagttcaggt ggatttaatt atgctatgtc
     4321 aaatcctgct ttaaaagagc gtgtgcaaaa agatttgcaa aaatttttag atgaaaatcc
     4381 gcaaattaca aaagaacaaa ttcctttgga tttgttaagc acttcaggat caggtcttga
     4441 tcctcatatc agtcttcaag cagccctagt gcaaattcct aggataagtc aatcttcaaa
     4501 aatcaccaaa gaagaattag aaaaaatcat tcaagaaaat acagagtcta aatttttagg
     4561 gatttttggg gaagaaaagg ttaatgtttt agctgttaat atagctattg ctaaagccat
     4621 gaaaaaagaa taaacatgca aagacaaagt cctgaacaaa ttcttaaaaa acttgaggtt
     4681 aaagctaagg aagaagaaaa aaacaaactt gcaaaattaa aaattttctt aggttatgct
     4741 gcaggttctg gaaaaactta tgctatgtta agtgaagcca gaactttaag ggataatgga
     4801 gttgatgttg ttttaggcta tatagagcct cacgatagac ctgaaacaat ggctttagca
     4861 caaggttttg aaagtatagc taatcttgaa attccttata aaaatatagt attaaaagaa
     4921 tttgatttag acgctaccct taagagaaag cctgctttgg ttttagtaga tgagcttgca
     4981 cacactaatg ctaaaggctt gcgtaatgaa aagtgttttc aagatataga agaacttcta
     5041 aaagcaggga ttgatgttta tactacttta aatatacagc atttagaaag tttaaatgat
     5101 ttagtcgcta atatcagtaa gatagaagtt aaagagcgtg ttcctgatcg tatttttgat
     5161 gaggctgatc aggttgaact tgttgatatt gaacctaata agcttttaaa aagaatgcaa
     5221 gatggtaaaa tttataagga aaaacaagcc aaactagcac ttgaaaattt ctttcgccaa
     5281 gaaagactta tagctttgcg tgagattgcc ttaagaagac ttgcttcaag agtgaattta
     5341 agagcaagtg aacaaaggct tattaatgat gatttagctt atcatactgg agagcatatt
     5401 ttagtttgta ttaatgcttc aaatgcaaag gttattcgtg cagctgcaag acttgcttta
     5461 gcttttcatg ctaaattgag tgcgctttat ataaaaaatc ccaatattaa agaagcaaaa
     5521 gccttagaag aaaatataga actagctaaa agttttgatg ctgaaatcat tagcgtatat
     5581 gatgatatag caagacaaat tgcagagtat tcaagcctta gcaatgtttc taaaattgtt
     5641 ttaggcaaaa ataaagataa aaaaaagttt aaagaagaga tttttgaagc tgttgctaaa
     5701 aaagcacccg atattgattt atatcttgtc aatgaaaatc aaatttctac tcctaaaata
     5761 cgaagtaaaa aaagttttga ttttttaggt tttttaaaaa tcacaggagt tttgctttta
     5821 gcaactttta tagcttttgt atttcataaa tttaatactc agccaagtaa tatagttatg
     5881 atttttattt tagcagtttt tgcttcttct tttatttctg acaataaaat tttcaccttt
     5941 tattcttctt tggtaagtgt tttgatttat aattttttct ttttagaacc tatttttagt
     6001 cttaaagttc atgatagtgg aaatattatt acttttacaa ctatgtttat agttggattt
     6061 ttaacagctg tttttactag aagattaaaa ttgcaatcta aagaactcac taaaagagct
     6121 tatagaacag ctattttact tgaaaatagt gaaaatttag caagagtgaa aagcaaacaa
     6181 gagctttggg aacaacttgg aaatcaagct ttaaaattat aaatttgcct attattattt
     6241 atcctataaa taaaaacaat attttatcga aacctttgtt gttttttaac gatgataagc
     6301 aaatgttaaa aaattgtttt agtgctgatg agattgctat tgctcaatgg gttgcaacaa
     6361 ataaagaaag agcaggtgtt tgtacaaata ccctgcctaa tgctaatgct atgtatttac
     6421 ctatagaaga tgggaaaaaa ctaaaggggt tataggtata gttttaaaag aaaaacgtcc
     6481 cttacaagac tttcagtatg aaattttaag tgctttactt aatgaggcag gagttagaac
     6541 aagggatata tttttattat aaatccctta atttattaat ctcatctcta atagcagcag
     6601 ctttttcaaa ctcaagtgct ttagctgctt caagcatttg ttttcttaac tctttgacaa
     6661 gtttagctct ttcgctagca ggcatttttt ctagtttttt acctttgcga taaatttcgc
     6721 ctaaatcctc ttcatttttc aaactctctt caatatggcg tttgactgaa gttggggtaa
     6781 tattgtattt tttattataa gccatttgaa gtttgcggcg ttcattggtg gtatccatag
     6841 cttcttgcat ggattttgtg atttttttgc aaaaaagcaa aaccttacca ttgacatttc
     6901 tagctgctct tcccatggtt tggattaaac ttgtagcgct tcttaaaaat ccttccttat
     6961 ctgcatccat aatggcaatg agtgaaactt caggtagatc tagtccttct ctaagtaagt
     7021 taatgccaat tagcatatca aaagcaccgc ttcttaaacc tcttatgatt tcattgcgtt
     7081 ctatagcatc gatgtctgag tgcatgtatt tgacttttat accaagctct aaataatacc
     7141 ttgtaagttc ttcagcgagt tttttagtta gcacagtcac taaaacacgt tcattccttt
     7201 gtatgacttt tttagcctca tcaaataaaa tttcaacctg attatcacta tcttttaact
     7261 ctattaaagg atcaagcagt cccgtaggac gcatgatttg atgaaagatg ttttctttgc
     7321 taagttcaag ttctaaaggt gcaggtgtgg ctgaaacaaa aagaaattga caatttttat
     7381 ggataaattc atcaaacatt aaaggacgat tatccaaggc tgaaggcaaa cgaaaaccat
     7441 aatctaccaa ggtttgtttt ctgcttctat ctcctgcaaa catacctcta aattgtggta
     7501 aagatacatg gctttcatcg actataacaa gaaatttcct atttttaatc gcaaaataat
     7561 caaaaagcgt ataaggagta tcaccttctt taagccctgt taaatgcctt gcatagtttt
     7621 caactccttt acacattcct gtgcttgtaa gcatttcaag atcaaattca accctttgtt
     7681 taaggcgttg atattctacg agtttatttt catgttcaaa ataagcaagg cgttcgttaa
     7741 gttctgcttt tatgtctttt atcgcttgtt ttaatcttgt ttcgcccacg ctaaactggc
     7801 ttgtaggata gagtatgaag cgttttaaat ctttaccttt tttattttct aaaacattgt
     7861 aatgatacat agcatcaagc tcatcgccaa aaaattcaag tcttactact tcatcttcat
     7921 aataagctgg ataaatgtct ataatatctc cttgaactct aaaatctgca cgatcaaaaa
     7981 aattatcatt tcttttataa cccatatcta caagtttttt taaaagttct ttttgtgaaa
     8041 tttgcatacc tagttcaaag attaaaacca tgcctatgta ttcatttgga ttaccaagtc
     8101 cataatttgc cgaaacgcta gctatgcaaa ctacatcttc ataacttaaa agagaagcag
     8161 tagcactcag tcttaaacgc tctaagtctt cattagtgga gctgtctttt tctatgaaaa
     8221 catcagtgcg tggaatatag gcttcaggtt gataataatc ataataagat ataaaatatt
     8281 ccacatgatt tttagaaaaa aagcctttaa attcgctata aagttgtgca caaaggcttt
     8341 tattgtgact catgataaga gtaggcatat taagttcttt aatgacattt gccatggtaa
     8401 aggtttttcc gcttcctgta acgcctagta aggtttgata tttgttgcct ttttttatac
     8461 tttttactat accttttatg gcttcttgtt gatcaggact aggtttaaat tcgctggtaa
     8521 gttctaacat ttttctactt tatttttatt tttgaaaaaa ttttaaaaga aaatgcttta
     8581 attaaaaatt aattgacaat aaaaacctaa atttaaattt ttttctgcta caatatcaaa
     8641 taatattttc cataaattac aaatttttta agaaggcaaa aatatgtttg atgaaaaaat
     8701 aatcaatact atgacagata aagtaaatga attaattgaa aagtataacg aagtttgcga
     8761 agccaatgag gctttaagaa atgagcttgt aagcgttaaa gcacaaaatg aagcaaaaag
     8821 taatcaaatt atgcgtttgg aagaagaact taaatctcgc aatatagaaa gcgaagatat
     8881 ttataagaaa atagaggctg ttcttggcag ataatctaaa acaagtcatt gttaatgtta
     8941 atgcaaaaga tttcattgtt aagtgcagtg aagaatttgc aaatttttta gaagatgata
     9001 tcgctttgat ttcagggggt actaaaaaaa tagaacttaa acgctttgta gatgcgtttg
     9061 ttaaaaaaag ttatgaaaat tatattctag aaagagaact taagaaacta ataaaagcaa
     9121 tcaatgaaga actcccgaca aaatgaacaa agcttttact ctgcttgagc ttgtttttgt
     9181 ggttttgatt ttgggaattt tatcaagctt atctttatct tttatcaata ctacaaaaga
     9241 tgaggttaaa attttaaaat taaaaatgga ctatgaaatg ctaagctcag ctcttgcttt
     9301 aatgcgtagt caaatgagac ttaaaaattt aaattttcca gaaattttag ataatgcgca
     9361 aaacaatcaa gccaaagaaa aactctttta ttgtttaaat gattgtgatt attctttgct
     9421 tgatacacct atttattctg attttaaatc ttggataaaa ataggtaaaa atcactatag
     9481 atttgcatta aatgctaaag agatggttga atttatttat gattctaaag aaggtttgtt
     9541 aaaatgtata ggaagttcta gatgcaaaga tctgatataa gatattatga acttgcaatt
     9601 tgtggtttgt atttggataa tttaactttt catagttttg atgaaatcaa acctttaaca
     9661 caagtattag tggatttaaa atctaaaaaa aatcttaaag ccatcgtact taaagaatgt
     9721 caaaaacctg attttaaaac tatagaaatt aaagaaatta cagggtattt tctaactcct
     9781 ttgcagtttg aattggcaaa ttttattgtt tattattatg cttcaaaact tggttttgtt
     9841 ttgggttttt ttgaaactag tcctaagtat gaatgtcaca aaatgttttt taaagatact
     9901 cctaaactaa gcaatcaaca acaaaatgcc ttaagttttc ttcaaaaaga aaataattcc
     9961 ttgctttttg ctgatacggg tagtggcaag actgaaattt atatttcttt gataaaagag
    10021 tgtttagaac agggtaagca agctttgctt ttgatgccag aaatcgcact tactccacaa
    10081 atgcaaaagc gtttagaagt gtattttaag gataattttt tcctgtggca ttctaaaatt
    10141 tcaaagaaaa aaaagcaaga atatttagag cgtttttgca agggagaagt gcttttagta
    10201 gcgggtgcaa gatcggcttt gtttttacct tttagaaatt taggacttat tgtagtagat
    10261 gaagaacatg ataattctta taaggcttct aaccagcctt ttatcaatgc aagagattta
    10321 gcactttttt tgggtcaaaa aaataatatt aaagtggttt taggttctgc aaccccatct
    10381 ttaacgagct tttataaaca aaaaagtttt agattaaaag gaactttttt tgagagtaaa
    10441 aaacattttt tatatgatga aaatgagctt ggtataacgc ctatgctttt aagtgaatta
    10501 gaaaaaagtt taaaacatca aaagcaagct atagtatttt tacctacaag ggctaatttt
    10561 aggcaaatca tttgtaagga ttgcggagaa acgataaaat gtcctttttg ttctattgct
    10621 atgagtatgc ataaaaagaa aaatgtttta aaatgtcatt attgtaatta tacttcttta
    10681 atagagcaaa attgtccaag ttgcaaagga gaaatgttag aagctagaaa aatggggact
    10741 gctgaacttt tagagctttt gcaaaatgct ttgcctttag caaaaatagc aaaatttgat
    10801 agcgatgaaa tcacaagcgt taaaaagctt aatattattt taaaagactt taatgaaaat
    10861 aagatcgata tacttattgg cacttctatg cttgctaaag gacatgatta tcatagtgtg
    10921 gatttgagtg tgattttagg gcttgatgaa tatttgttgc gtcctagttt tagagcgagt
    10981 gaagaaactt tagctttagc tatgcaagtt gcaggcaggg cagggcgtaa aggcgaagca
    11041 agagtacttt tgcaaacaaa aaatagagct ttttttgaaa ggtatataga gaattatgat
    11101 gcttttttaa aagatgagtt agaaaataga aaagatcttt accccccatt taaacgcctt
    11161 ttaagagttc ttatagaaga taaagatcaa aaaagtgcac aaaaactttg tgaaaaattt
    11221 gcttctcaat ttagaaatat caaacaggta gaattggtag gctatggaat ttgtggagtt
    11281 gaaatgctgt atggaaaata tcgtttttat ttgttgctta gaagtgaaaa tcataaagct
    11341 ttagtggcaa ttgaaaatta tattttgcaa tttaaaaatg caagtgcgga tattgatcct
    11401 attgattttg tgtaagtgat atgattattt atctttgtat attttttcaa attctttata
    11461 atatttccaa gaatcaataa tatgaggatg tgtttgtttt aaatgattta gttcattttc
    11521 aaatatatta aaaaaagtgt aaataagtga tttatttttt ataaaataat ctattacatc
    11581 tttttctttc atcatttttg attctgtttc atctatggtt attttaattt gatataaaaa
    11641 atcatacaaa taatgtttaa ttgttgaaaa taaaagattg ttttgttcta attgcttaaa
    11701 atcattttta tcaatatata cacccatatc attacatagg tcgtttttta taatttcttg
    11761 tattatgtct attttttcat gattgatatg ttttctgtct aaaattatgg gaatgctaga
    11821 agttctatca atattgaaat ttttattatt tttaggagta ttgagataaa aggtgttatt
    11881 aatatcttta gaatttgcat aaagtgtaat aggaaaaaga tagcgaatat aacctctaaa
    11941 ttctttaatt ttaaataaat ctaatttatc tttatggggg ggggtaaaat taaaatttat
    12001 agcaagtaaa ttcatggtat cgaaggcctt tgattggcgg atttcttcca tatcaagata
    12061 gtatacattg tctttgttaa aatattttaa taaataagag atgataaaaa ctccttgttg
    12121 tagttcattt atatcgattt taattttatg attttgatga gtaagatagt tgatgtaata
    12181 acgccaatca taagttagat taaattcagg gggatagttt cttaaaactt tactccaatc
    12241 tcttccccag ctatgcttta aaagtcctat tggatctcga actccgcaaa taatcttaga
    12301 attaaaatct aataaagata gatatttatc aaaataaggt agattaattt ctgatatatt
    12361 aatagcatat tgagcaattg tattatcatt tagacacatg taattaatac aatatctctc
    12421 tttgctatca ggtggtaaaa cccaggaggc aaaacaagtt acatcgcaac attgattaag
    12481 gtatcttaaa aatgctgctg ctccaacgcc atgtggagaa atatagataa atttatagtg
    12541 tttaggtagg ggtaaattta aatcccaagc taattctgcg caatgtcgac tagaatctat
    12601 ttctataaaa ttaggattga ttaaaggtgg ataaggatgt tttgttgata aatatctatc
    12661 cctaaattcg ttagaattga gccaagtgca aattgtttca atatttttca aaacaaaggt
    12721 aaaaaatttt tcattattcg aattttttaa agcttgtaaa agaatttgag ctagggttgg
    12781 agttaggtta ttttttatat agagtaaaag att
//
LOCUS       DBBXPZ010000047        12736 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.049, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000047 DBBXPZ010000000
VERSION     DBBXPZ010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12736)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12736)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12736
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.049"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            112..897
                     /locus_tag="ACJFD7_001119"
     CDS             112..897
                     /locus_tag="ACJFD7_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HGG0859933.1"
                     /translation="MEITDLPYLIIGIISGIASGLFGIGGGMIIVPSMFALGASAHHA
                     IGISVLQMIFAAVFGSYINYKKKNLNLKDGIMIGFGGLIGASFSGMLLKALSDVALTS
                     VFLAVSCIFFIKYAFGIKENIVQNQRSVCVKNVILFIAGAFTGIFAISLGIGGGLLIA
                     PILAYFLGYDNKKVVSLSLFFVIFASVSGIISFSNSGVIDSEVIHKGILVGIASMVGV
                     FIGIKIIEKMHISAHRKILLCVYALSILGTTHSLLNKLNFINF"
     gene            970..3795
                     /gene="uvrA"
                     /locus_tag="ACJFD7_001120"
     CDS             970..3795
                     /gene="uvrA"
                     /locus_tag="ACJFD7_001120"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HGG0859934.1"
                     /translation="MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFG
                     TLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTI
                     TEIYDYLRLLYARVGIQHCHQCGQKISSMSVSDIVSEILKFPKGAKIIIYAPLIREKK
                     GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRL
                     ASDIEKGLQESFGEIEIEVLNHEEINLNKHYHFSEHSACFDCKISFVPLEPLSFSFNS
                     PKGACEACDGLGIRYTLDMKKIIDENLSLENGAVKIMYGFNKSYYYKFLIAFCEQNEI
                     PIKIPFMQLNEEQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYKMLKDEKDLAEY
                     MSEKICKDCGGHRLKPESLAVKVAKKSLGEILDMSIEDSTAFFADEKNFSYLSEQQKL
                     ISKPILKEINERLFFLYDVGLGYLSLGRDARTISGGEAQRIRIASQIGSGLSGVMYVL
                     DEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKAGKFGGE
                     VVFSGTYKELLKSKSETALYMNGKKQISQLQNRTQKEWLELKNVNINNIQDLSVKFPL
                     QNLVAITGVSGSGKSSLILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQ
                     SPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKAGRFSFNVKGGRCEKCSGDGE
                     IKIEMHFLPDVMVVCDTCGGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKI
                     KQKLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLH
                     FEDVNKLILVLQHLVDLKNSVFVIEHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVE
                     KVAKEHKKTRSYTGYYLDLELKNTQKS"
     gene            3800..4243
                     /locus_tag="ACJFD7_001121"
     CDS             3800..4243
                     /locus_tag="ACJFD7_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YqaA family protein"
                     /protein_id="HGG0859935.1"
                     /translation="MFDFLYNDISYLGLFMVCFLSSTLLPLASEAFVLGFIKLDFNPN
                     LVLIVATLGNTLGSLSTYALAYFGKEKILEKYFSKSLKKLENFNANFAKFGSIFAFFT
                     FLPLVGDLFALGLGFAKYSFLKTIFFILLGKLSRYTFIIFIANSF"
     gene            complement(4199..5206)
                     /locus_tag="ACJFD7_001122"
     CDS             complement(4199..5206)
                     /locus_tag="ACJFD7_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HGG0859936.1"
                     /translation="MRLILDTDIGNAIAGANTDDGLALALILSSKEIKLEMLSTVCGN
                     VPSLVAYSVAKDLFKRLNLNIPVYLGANEALKEPSKAWRQRLDESVKNFKLEYLWENI
                     KSPEILENINPDAIFKMGELVSKNPKEISICAIGPLTNIAMTMKIFKDFDINLKELFI
                     MGGSFDMPYYTKDTNFGFDPEAASIVLNSRAKITLIPYNATMQTLLTHEDLKELQGKN
                     ILCDFIVETLGVWIDYASKTRGTKGTWIHDALTIAYALDSSIADFDECYADVICDSSL
                     ARGMSWRCFREPKMSMGVDLSTKNCIKILKNVDNARLLKLIKERLLKGVCYENYESIT
                     T"
     gene            complement(5203..6564)
                     /locus_tag="ACJFD7_001123"
     CDS             complement(5203..6564)
                     /locus_tag="ACJFD7_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0859937.1"
                     /translation="MTNQQIDGIADKNFNTPEGRKVFKKAVFSCWLGTAMEYADFALY
                     GLAAATIFSEVFFPEQTPVIALLLSFVTYGIGFIARPIGALFFGHLGDKHGRKNVMMA
                     TIALMGISTTLIGFIPSYAVIGVWAPICLVALRFMQGFGAGAELSGGTVMLGEYAPSK
                     RRGLVSSVIALGSNSGTLLASFVWLLMVQMDEASFKEWGWRVPFMGSILIALFAVYIR
                     FHVKETPVFEKQKNEMMKLRLNNEKHMKKDERSFWQRSRAFWTMVGLRIGENGPSYLA
                     QGFIVGYVTKILLLDKSVATTAVMIASLVGFLVIPLAGYLSDKFGRCITYRMFCLLLM
                     IYAFPAFMLLDSKNEIIVILTIIVGMSLASLGIFGMQAAWGVELFGVKNRYTKMAFAK
                     ELGSILSGGTAPMVASALLAYYGAWWPIATYFVLTAGIGFATTFFAPETRGRDLNKIE
                     DAI"
     gene            6728..9367
                     /gene="polA"
                     /locus_tag="ACJFD7_001124"
     CDS             6728..9367
                     /gene="polA"
                     /locus_tag="ACJFD7_001124"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HGG0859938.1"
                     /translation="MKTLTIIDTFGFFFRLYYALKGFKNSQGQASGMISGFANFIYSL
                     KNEYKSDYIVFALDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISV
                     SQEGYEADDIIASFVKTCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAA
                     CLEKYGVKPNQIRDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVR
                     NERSRNLLLEGKENAFLSKKLASLYDNLEVQNLIEKATYPDEEPLLKILEILEHYELN
                     TLLKKLRQNPDNKDKNLGFKATLVQDENKLFEILNTLDKESIIAFDTETTGLDTKEAK
                     IVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAIEVIFNHFVIGHNLKYDFKII
                     QNNFGLNLPQKYADTMILAWLKNPSSRVNMDDLALRLFNYETLHFESLVKKGENFASV
                     ELEKACKYAAEDAYITLRFYLDFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLNT
                     NALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYS
                     TDEKVLNALLDKHPVITKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTA
                     TGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKL
                     LNAFANDEDIHARTAIMIFGESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAK
                     SYIEKYFENFTSIKKYFETVKNEAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESI
                     NSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIME
                     NIVKLKVKLKTSSSIAKNWGDLK"
     gene            9383..10159
                     /gene="motA"
                     /locus_tag="ACJFD7_001125"
     CDS             9383..10159
                     /gene="motA"
                     /locus_tag="ACJFD7_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HGG0859939.1"
                     /translation="MDLSTILGMVLAVTSISVGDILEGGNPLHVVHLSSFLIVMPTAA
                     FCAMTSTHKKIVKAAYKELKVVFKGSGVNLPERIAQLIEFAIIARRDGLLALESRTSE
                     IENEFLKNAMMMLVDGKSFEEIHESMEIQTEQLEEHYKECAEYWIVFGETCPTMGLVG
                     AVFGLILALKLLDNPQAMAAGISGAFTATVTGIFGAYALFAPWGKKLKANGMDLVKEQ
                     IVITEAIKGIAEGANPRDLEAKLFNFLSHDDPRISQFDKG"
     gene            10162..10905
                     /gene="motB"
                     /locus_tag="ACJFD7_001126"
     CDS             10162..10905
                     /gene="motB"
                     /locus_tag="ACJFD7_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HGG0859940.1"
                     /translation="MAKKHKCPECPAGEKWAVPYADFLSLLLALFIALWAISKTNPAK
                     VEALKTEFVKIFDYTSTQTVKEEAKTQEKYKGAAKEESDELKSLKQITMTQQETIKRL
                     QAALDQSDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEIRGY
                     TDNSDSIIRSYELAYQRAENVLKYFIEGGANLKNISIKSYGLNNPINGNPQALENNRV
                     EIYFKVDTADTSTQKSVLELINKIGTKTP"
     gene            complement(10902..11999)
                     /gene="flhB"
                     /locus_tag="ACJFD7_001127"
     CDS             complement(10902..11999)
                     /gene="flhB"
                     /locus_tag="ACJFD7_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002879724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HGG0859941.1"
                     /translation="MAGEDQEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTI
                     TLFMMSFMGERIVNLYRYYQSFIGVEFDLRIIQAIMIKSIFEVLIILAPIVLSIMIAG
                     VLGNIMQFGFIFTTKPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFI
                     VLLKFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGL
                     RMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIR
                     YDTSKEQAPRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREM
                     FKAVAEVLGFVYNTNNKSRLAGQVKKGNQSF"
     gene            complement(12118..12714)
                     /gene="ahpC"
                     /locus_tag="ACJFD7_001128"
     CDS             complement(12118..12714)
                     /gene="ahpC"
                     /locus_tag="ACJFD7_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HGG0859942.1"
                     /translation="MIVTKKALDFTAPAVLGNNEIVQDFNLYKNIGPKGAVVFFYPKD
                     FTFVCPSEIIAFDKRYQEFKNRGIEVIGISGDNEFSHFAWKNTPVNQGGIGQVKFPLV
                     ADLTKQIARNFDVLYAEAVALRGSFLLDADGTVRHAVVNDLPLGRNIDEMLRMVDTML
                     FTNEHGEVCPAGWNKGDEGMKANPKGVAEYLGKNEAKL"
BASE COUNT         4612 a         2111 c         2005 g         4008 t
ORIGIN      
        1 taaagttacc aaaaaaaata ttctattgtt ataaaaaact aagataatac ttagcttaat
       61 aagataaaat tattccgtat ttgaaatatt tagtattttt taggaaaagc tatggaaatc
      121 acagatttac cttatctaat cataggaatc atttcaggta ttgcttctgg actttttggc
      181 attggtggag gtatgattat cgttccttct atgttcgcac ttggagcaag tgctcaccat
      241 gctatcggaa tttcagtatt acaaatgatt tttgcagcag tttttggctc ttatattaat
      301 tataagaaaa aaaatctaaa tcttaaagat ggtattatga taggttttgg agggctcata
      361 ggggcaagct ttagcggaat gcttttaaaa gctttaagtg atgtagctct tactagcgta
      421 tttttggcgg taagttgtat attttttatc aaatatgctt ttggaattaa agaaaacatt
      481 gtgcaaaatc aaagaagcgt ttgtgtaaag aatgtcattt tatttattgc tggagctttt
      541 actggtattt ttgctatttc tttgggaatt ggtggcggac ttttaattgc tccgatttta
      601 gcttattttt taggctatga taataaaaaa gttgtttcct tatccttgtt ttttgttatt
      661 tttgcttcag tctctggtat tatatctttt tcaaattctg gagttataga ctctgaagtt
      721 attcataaag gaatactagt aggtatagct tctatggttg gagtttttat aggaattaaa
      781 atcatagaaa aaatgcatat ttcagctcat agaaaaattt tactttgcgt atatgcctta
      841 tcaatacttg gaaccaccca ctctttgctt aataagctaa attttataaa tttttaactt
      901 ggatttatcc aagttctttt aatattatta tgctaaaatc ttaaatttat ttaatgttta
      961 ggaaagacta tgaacgatac cataaaaatc attggcgcaa gagaaaataa cctaaaaaat
     1021 atccaccttg aaattcccaa aaacaaactc attgttttta caggactgag cggaagtgga
     1081 aaatcaaccc ttgcttttgg aactctttat gctgaaggac aacgccgtta tatagaaagt
     1141 ttaagtgctt acgccagaca atttttagat aaggtaggca aacctgatgt cgataaaatc
     1201 gaaggtttaa ctccagccat tgccatagat caaaaaacta cttctaaaaa tccacgctct
     1261 actgtaggaa ccatcactga aatttatgat tatctaagac ttttatacgc aagagttggc
     1321 attcaacatt gtcatcaatg cggacaaaaa atttcatcta tgagtgtaag tgatatagtc
     1381 agtgaaattt taaaatttcc aaaaggtgca aaaatcatca tctacgcccc actcatacga
     1441 gaaaaaaaag gaacttatgc agatttgctt gaaaatttac gcaacaaagg ctatgtaaga
     1501 gctcaaattg atggagtttt ggtaagactt gatgaagaaa ttgaactagc caaaaccaaa
     1561 aaacacacca ttaaacttgt catagatagg cttgaaattc aagaagattt actttctcgt
     1621 cttgcaagcg atatagaaaa aggcttacaa gaaagctttg gagaaataga aatagaagtt
     1681 ttaaatcatg aggaaataaa ccttaataaa cactatcatt ttagcgaaca ttcagcttgt
     1741 tttgattgta aaatttcctt tgttccactc gagcctttaa gcttttcttt taattctcca
     1801 aaaggagcat gtgaagcttg cgatggactt ggaattcgtt atactttaga tatgaaaaaa
     1861 atcatcgatg aaaatttaag tctcgaaaac ggtgctgtta aaatcatgta tggttttaat
     1921 aaaagttatt attataaatt cctaatcgcc ttttgcgaac aaaatgaaat tcctatcaaa
     1981 atacctttta tgcaattaaa cgaagaacaa aaacgtcttg tattgtatgg taatgccaaa
     2041 actatagaat ttctttggaa aagaaatcgc ctaaaacgca cttttgaagg cgtggttaaa
     2101 atggcttata aaatgctaaa agatgaaaaa gatttagctg aatatatgag tgaaaaaatt
     2161 tgtaaagact gcggtgggca tcgtttaaaa cccgaaagtt tagccgtgaa agtagccaaa
     2221 aaaagcttgg gtgaaatttt agatatgagc atagaagata gtacggcttt ttttgcagat
     2281 gagaaaaatt tttcttattt aagcgagcaa caaaaactta tttctaaacc tatcctaaaa
     2341 gaaatcaacg aaagattgtt tttcttgtat gatgtggggc taggttatct ttctttaggg
     2401 cgcgatgcaa gaacgattag tgggggtgaa gcacaaagaa tccgcatagc ttcacaaatt
     2461 ggcagtggtt taagcggagt gatgtatgtc ttagatgagc ctagcatagg acttcatgaa
     2521 agagatactg caaaactgat taaaacttta agaaatttac aacaaaaggg caatacccta
     2581 attgtcgtag agcatgataa aatgaccata gaagaagcag attttattgt agatattggt
     2641 ccaaaagcag gaaaatttgg gggtgaggtt gtatttagtg gaacttataa agaactttta
     2701 aaaagcaaaa gcgaaactgc actttatatg aatggtaaaa aacaaatttc acaacttcaa
     2761 aacagaacac agaaagaatg gcttgagctt aaaaatgtaa atattaacaa tatccaagat
     2821 ttaagcgtaa aatttccttt gcaaaattta gtcgctataa caggagtttc aggttctgga
     2881 aaaagctctt tgatacttca aaccctactt ccttttgcac aagaggaatt aaaccgtgcg
     2941 aaaaaagtta aaaaacttgg cggagtacaa atagaaggac ttgaaaaact tgataaagtc
     3001 atttatcttg atcaaagccc aattgggcgc acaccacgtt caaatcctgc cacctataca
     3061 ggtgctatgg atgaaatcag aaatcttttt gccgccacta aagaagccaa aatgcgtggt
     3121 tataaagccg gacgcttttc ttttaatgtc aagggtggaa gatgtgagaa atgtagcgga
     3181 gatggagaaa tcaaaataga aatgcatttt ttacctgatg ttatggtagt ttgtgatact
     3241 tgcgggggca aacgctacaa tgatgccacg ctagaaatca aatataaagg caaaaatatc
     3301 agtgaaattt taaatatgag tgttttagaa gcgagtgaat tttttacagc cgttcctaaa
     3361 atcaaacaaa aattagatac tctagtaaaa gtgggtttag attatctaac tctaggacaa
     3421 aatgccacca ccttaagtgg aggtgaagca caaagaatca aacttgctaa agaactaagc
     3481 cgtagcgata caggaaaaac gctttatata cttgatgaac ctacaacagg actgcatttt
     3541 gaagatgtca ataaactcat cttagtttta caacatttgg ttgatcttaa aaattctgtt
     3601 tttgtgatag aacataattt agatgtgatt aaaaatgctg attatatcat cgatatgggg
     3661 cctgaaggcg gagttaaagg tggaaaagtt ataagcacag gaagcgtgga aaaagtcgcc
     3721 aaagaacaca aaaaaacccg ttcttacaca ggatattatc tagacttaga gcttaaaaat
     3781 acacaaaaat cataatttta tgtttgattt tttatataat gatattagct atttggggct
     3841 tttcatggtg tgttttcttt caagcacact attaccctta gcaagcgaag cctttgtttt
     3901 aggctttata aaacttgatt ttaatccgaa tttggtactt atcgtagcca ctttgggtaa
     3961 taccttagga agtttaagta cttatgcttt agcgtatttt ggaaaagaaa aaattttaga
     4021 aaaatacttt agcaaatcct tgaaaaaatt agaaaatttc aatgctaatt ttgctaaatt
     4081 tggaagtata tttgcttttt ttactttttt acctttagtg ggagatcttt ttgccttggg
     4141 acttggtttt gcgaaatatt cttttttaaa aactatattt tttatcttac ttggaaaatt
     4201 aagtcgttat actttcataa ttttcatagc aaactccttt taaaagcctc tcttttataa
     4261 gttttaaaag ccttgcatta tctacatttt ttaaaatttt aatacaattt ttagtgctta
     4321 aatccacccc catactcatt tttggttctc taaaacaacg ccaactcata cctcttgcca
     4381 aagaactatc gcaaataaca tcagcataac actcatcaaa atctgcaata ctagaatcta
     4441 atgcgtaagc tatcgttaaa gcatcatgta tccaagttcc ctttgtacca cgtgttttag
     4501 aggcataatc aatccaaaca cctaaagttt caacgataaa atcacataaa atattcttac
     4561 cttgcaactc ttttaaatcc tcgtgtgtta ataaagtctg catggttgca ttataaggta
     4621 tgagtgtaat tttagctctt gaatttagca ctatactagc cgcctcagga tcaaaaccaa
     4681 aatttgtatc tttagtgtaa taaggcatat caaaactgcc gcccataata aaaagctctt
     4741 taagatttat atcaaaatct ttaaaaattt tcatagtcat agcgatattt gtcaaaggtc
     4801 ctatcgcaca aatagaaatt tctttaggat ttttactcac caactcaccc attttaaaaa
     4861 tcgcatcagg atttatattt tctaaaattt caggactttt tatattttcc caaagatatt
     4921 caagtttaaa atttttaaca ctttcatcaa gtctttgacg ccaagcttta cttggttctt
     4981 ttagggcttc attcgctccc aaataaacgg ggatatttaa atttaaacgt ttaaataaat
     5041 ccttagccac actataggca acaaggcttg gaacattacc gcaaactgtg cttagcattt
     5101 caagtttgat ttctttagat gacaaaatca aagcaagtgc taaaccatca tcagtatttg
     5161 ctcctgcaat agcattgcct atgtccgtgt ctaagataag tctcatatcg catcttctat
     5221 tttatttaaa tctctacctc tagtttctgg cgcaaaaaat gtagtcgcaa aacctatacc
     5281 tgcagttaat acaaaatatg tcgcgatagg ccaccaagcg ccataatatg caagcaaagc
     5341 agaagccacc ataggcgctg ttcctcctga aagaatagaa cctagctcct tagcaaaggc
     5401 catttttgta taacggtttt ttaccccaaa aagctccaca ccccaagccg cttgcatacc
     5461 aaaaatccct aaagatgcta aagacatacc tacaataata gttaaaatca caataatttc
     5521 atttttacta tctaaaagca taaaagcagg aaaagcataa atcattaaaa gcaaacaaaa
     5581 cattctataa gtaatacatc ttccaaattt atcacttaaa taacccgcca aaggaataac
     5641 taaaaaccct accaatgaag ctatcattac cgctgtagta gctactgatt tgtctaaaag
     5701 taaaatttta gtcacataac ctacaataaa accttgcgca agataagaag gtccattttc
     5761 gcctattctt aagcccacca tagtccaaaa agcacgactt ctttgccaaa aacttctttc
     5821 atcttttttc atatgctttt cgttattaag acgcaatttc atcatttcat ttttttgctt
     5881 ttcaaaaaca ggggtttctt tgacatgaaa acgaatatat acagcaaaaa gagcgattaa
     5941 aatacttccc ataaaaggaa ctctccagcc ccattcttta aaacttgctt catccatttg
     6001 taccatcaaa agccatacaa aagacgcaag caaagttcca ctatttgatc ctaaagcaat
     6061 cacagaagaa acaagccctc ttctcttgct aggagcatat tctcctagca taactgttcc
     6121 acctgaaagt tcagctcctg cgccaaaacc ctgcataaaa cgtaatgcaa ccaaacaaat
     6181 aggcgcccaa acaccaatca ctgcataact tgggataaaa cctatcagag tagttgaaat
     6241 tcccattaaa gctattgtag ccatcataac attttttctt ccgtgtttat cacctaaatg
     6301 accaaaaaac aaagccccaa taggtcttgc aataaaacct atgccataag ttacaaaact
     6361 aagcaaaagt gcaattactg gagtttgctc aggaaaaaat acttctgaaa aaattgttgc
     6421 agctgctaaa ccataaagtg caaaatctgc atattccata gcagttccca accagcaaga
     6481 aaaaactgcc tttttaaaaa cttttctacc ttcaggtgtg ttaaaattct tatctgcaat
     6541 tccatcaatt tgctgatttg tcattacatt ttccttacat tattcatata aaatttttac
     6601 tctactcaat attatgacta aaaattgaag tattttcgct taaatatctt taaatttcga
     6661 gacattttaa gcaaaatttt gaaataatat aaccaaaaaa tatattttat caaaagaaga
     6721 aattattatg aaaactttaa ctattattga tacttttgga ttttttttca gactttacta
     6781 cgcattaaaa ggttttaaaa attcacaagg acaagctagt ggaatgatta gcggttttgc
     6841 aaattttatt tatagcttaa aaaatgaata taaaagtgat tatattgttt ttgcattaga
     6901 ttccaaagga aaaacttttc gtagcgaaat tgatccaaac tataaacaaa atcgcactcc
     6961 accaccgcct gaacttctag aacaaattcc aatttgcata aagatgatag aaaaaatggg
     7021 ttttataagc gtttctcaag aaggttatga agccgatgat atcatcgctt cttttgtaaa
     7081 aacttgtgaa gatagggata tttttgtacg tattatcact caagataaag atctttatca
     7141 actcataaaa gatggtaaaa caagcattta cagtcctatt tctaaaaacg actatgatga
     7201 agcagcgtgt ttagaaaaat acggagtaaa acctaatcaa atcagagatt ttttagctct
     7261 ttgtggggat agttctgata atattccagg cgttaaaggt ataggtgcaa aaggagctaa
     7321 aaccttgctt gatgagtttg gtagcataga gggaatttat gaaaatttaa ccctagtacg
     7381 taacgaaaga agtcgtaact tgcttttaga gggtaaggaa aatgcatttt taagcaaaaa
     7441 attagcttct ttgtatgaca atttagaagt acaaaatctc atagaaaaag ccacttatcc
     7501 tgatgaagaa cctcttttaa aaatacttga aattttagaa cattacgaac ttaatacttt
     7561 gcttaaaaaa ctgcgtcaaa atcctgataa taaagataaa aatttaggtt ttaaagccac
     7621 tttagtacaa gatgaaaaca aactttttga aattttaaat acccttgata aagaaagtat
     7681 tattgctttt gataccgaaa ccacaggact tgatactaaa gaagcaaaaa ttgttggttt
     7741 tagtttttgc atgaatgaaa atgaagcctt ttacgtgcct ttaactcata attatcttgg
     7801 agtaggtgag caaatctcat tgcaaagtgc caaaaaagct atagaagtaa tctttaatca
     7861 ttttgttata gggcacaatc tcaaatatga ttttaaaatc attcaaaaca attttggatt
     7921 aaatttacct caaaaatatg cagatacaat gattttggca tggcttaaaa atccttcttc
     7981 aagagtaaat atggatgatt tagctttaag actttttaat tacgaaacct tgcattttga
     8041 aagccttgtt aaaaaaggag aaaattttgc aagcgtagaa cttgaaaaag cttgtaaata
     8101 cgccgcagaa gatgcttata taactttaag attttatctt gattttttaa aaaatcttga
     8161 aactccttta ttagaacttg ctaaaaactg tgaatttgat ttcattaaaa tcattatgat
     8221 gatggaagaa aatggtatca aacttaatac aaatgcactt gaaatcctta tgaaaaaatt
     8281 tgaaaatgaa atcaaaaatt taagtgaaga aatttatact ctttgtgagg atagattcaa
     8341 cctaaattca cctaaacaag taggcgatat actttttgaa aaactcaaac tcccaagtgg
     8401 aaaaaaaggt aaaacaggat attctaccga tgaaaaagtt ttaaatgcac ttttagataa
     8461 acatcctgtg attaccaaaa ttttagatta tagggaactt gccaagcttt attccactta
     8521 ttgcgaacct ttgttaaaac tagcattaaa agataaaaat tcacgcattt attcaagttt
     8581 tttacaaact ggaaccgcta caggacgcct ttcatctaag gatccaaatt tgcaaaatat
     8641 tcctgcacac ggacaatacg caaaagatta taaatcttgc tttgtagcta aagatggatt
     8701 tagttttatc tctcttgatt attctcaaat cgaactgaga atgcttgcac attttagcga
     8761 agatgaaaaa cttttaaatg cttttgccaa cgatgaagat atacatgcaa gaacagctat
     8821 aatgattttt ggagaaagca attatgaaac cagaagtgtt gcaaaaagta taaattttgg
     8881 acttatttat ggcatgggct ataaaacttt aagtcaaaat ttaaaaatag aagctcattt
     8941 agccaaatct tacatagaaa aatattttga aaattttact agtattaaaa aatattttga
     9001 aacagttaaa aatgaagcta aacaaaatgg ctttatcact actttaagcg gtcgcaagcg
     9061 ttattttgat tttgaaaacg caaaacctat gcaaattgcc atgtatgaaa gagaaagcat
     9121 taattcaatc ttacaaggct cagcggctga tgtaatcaaa cttgcaatgc tagaaatcaa
     9181 taaagaatta aatgaagaca aaaagcttat tttgcaaatt cacgatgaat taatttttga
     9241 agtaaaagac gatttgtgtg aaaattttgt aaaaaaaact agagatatta tggaaaatat
     9301 agtaaaatta aaagtaaaat taaaaacaag ttcaagtatc gccaaaaatt ggggcgattt
     9361 aaaataatca aggagataat taatggatct ttcaaccata ttaggaatgg tgcttgcagt
     9421 tactagtatt tcggtaggag atatactaga gggaggcaat cctttgcatg ttgtgcatct
     9481 ttcttccttt ctcatagtta tgccaacagc tgcattttgc gcaatgactt ctacgcataa
     9541 aaaaattgta aaagcagcct acaaagaact caaagttgtt tttaaaggtt ctggagtaaa
     9601 tttacccgaa aggatagccc agttaataga atttgctatt attgcaagac gagatggtct
     9661 tttagcgtta gaatcaagaa ccagtgagat tgaaaatgaa tttttaaaaa atgctatgat
     9721 gatgcttgta gatggtaaaa gctttgaaga aattcatgaa agcatggaaa tacaaactga
     9781 acaacttgaa gagcattata aagaatgtgc agaatattgg atagtatttg gagagacttg
     9841 tcctaccatg gggcttgttg gagcggtttt tggacttatt ttagctctta aattactaga
     9901 caatcctcaa gcaatggcag caggtatttc aggtgctttc acagctacag ttacgggaat
     9961 ttttggcgct tatgcacttt ttgctccttg ggggaaaaaa ttaaaagcta atggaatgga
    10021 tcttgtaaaa gagcaaattg ttattactga agctataaaa ggaattgcag aaggtgctaa
    10081 tcctagagat ttagaagcta aactttttaa cttcttaagt cacgatgatc caagaatttc
    10141 acaatttgac aaaggttaaa aatggctaaa aaacataaat gcccagaatg tccagcaggt
    10201 gaaaaatggg ctgtgcctta tgcagacttt ctaagtttgc ttttagcact ctttattgct
    10261 ctttgggcaa tttctaaaac aaatccagct aaagtagaag cattaaaaac agaatttgta
    10321 aaaatttttg attacacctc tacccaaaca gtcaaagaag aagctaaaac tcaagaaaag
    10381 tacaaaggcg cagcaaaaga agaaagcgat gaactcaaat cgttaaaaca aataactatg
    10441 acacagcaag aaactatcaa acgtcttcaa gcagctctag atcaaagcga taatcaggtt
    10501 gctcttaacc ttccatctaa agttgaattt gaaagaggta gtgctcaaat cgtttcagct
    10561 gatatacaag attatttaaa acgtatggct gagctaacaa catatttgcc acctcaagca
    10621 aaaatagaaa ttagaggcta tacagacaat agcgactcta ttataagaag ttatgaactc
    10681 gcctaccaaa gagcggaaaa tgtattaaaa tattttatag aaggtggagc aaatttgaaa
    10741 aatattagca ttaaaagcta cgggcttaat aatcccatca atggaaatcc acaagctcta
    10801 gaaaataaca gagtagaaat atattttaaa gtcgatacag cagatacaag tactcaaaaa
    10861 tcggttcttg aacttatcaa taaaatagga actaaaacac cttaaaagct ttggtttcct
    10921 ttttttactt gaccagctaa acgactctta ttatttgtat tataaacaaa tcctagcacc
    10981 tcagctacag ctttaaacat ttccctagga ataagatcgt taacatcgca agctttataa
    11041 agttcccttg ctaaaggagg attttcataa actacaacat tattttcata ggctacttgt
    11101 tttatgcgaa gagcgagaaa atccactcct ttggcgacaa ccctaggagc ttgttcttta
    11161 cttgtatcat aacgaatagc tacagcataa tgagttgggt ttgtaatcac tacatccgca
    11221 cctgcaacat cttgaaccat acgacgacgc gcagcttcca tttgaagtct acgaattcta
    11281 cctttaacct gaggatctcc ttccatttgt ttatattcat cttttatttc ttgcttgctc
    11341 atacgcaaac ctttaaaata ctgaaaacgt accaaaaaaa catctaaaac agcaataatt
    11401 aaaaaagcaa ctataacaat agctgctaaa acaatagctc tgtctcttag ccaagtaagc
    11461 tgtgcaacca tagtataaag ctcaactctt gggagctctt gcataaattt aagcaaaact
    11521 ataaaagcta tagtaaaaac aatacccact tttaaaataa tttttatact ttcaacaatt
    11581 tttttcaatg aaaaaaggtt ttttaaacct tttagaggat tgatttttcc taaatttggc
    11641 ataataggtt tagttgtaaa aataaaacca aattgcataa tatttcccaa aaccccagca
    11701 atcataatac ttaaaacaat aggtgcaaga ataattaaaa cctcaaaaat gcttttaatc
    11761 ataatggctt gaataatacg caaatcaaat tcaacaccaa taaaactttg atagtatcta
    11821 tataaattta caattctctc gcccataaaa ctcatcataa ataaagttat agttactcca
    11881 attatcaaag ttacaatagc tgccgcatct tgagactttg gaacattacc ttctttacgc
    11941 gcatcttcta tctttttgga cgtgggttct tctgtttttt cttgatcttc gcctgccata
    12001 ttttagccta aataaaaatt ttaatatgtg tgtaaaatta tagtagaaaa tttatgaatt
    12061 tcaattaaag aataaaaatg aagaaaaagc ctcgtaaaga ggctttatgc taagaaatta
    12121 aagtttagct tcgtttttgc caagatattc agccacgcct ttagggttag ctttcatacc
    12181 ttcatcgccc ttattccatc ctgcaggaca aacttcacca tgctcatttg taaaaagcat
    12241 agtatcaacc attcttaaca tttcatctat atttctacct agtggtaaat cattaaccac
    12301 agcatggcga actgttccat cagcatcaag caagaacgaa ccacgaaggg caactgcttc
    12361 tgcataaagt acatcaaaat ttctagcaat ctgcttagtt aagtcagcaa caagcggaaa
    12421 tttaacctga ccaataccac cttgatttac tggagtattt ttccaagcaa aatgtgaaaa
    12481 ttcattatct cctgaaattc caattacttc aatgccacga tttttaaatt cttgatatct
    12541 tttgtcaaaa gctataattt ctgaaggaca aacaaaagta aaatcttttg gataaaagaa
    12601 tactaccgct ccttttggac ctatgttttt ataaagatta aaatcttgaa caatttcatt
    12661 gtttcccaat actgctggag cagtaaaatc taaagctttt ttagtaacta tcatattttc
    12721 tcctaaataa taaatt
//
LOCUS       DBBXPZ010000048        12606 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.050, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000048 DBBXPZ010000000
VERSION     DBBXPZ010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12606
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.050"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..761)
                     /gene="purU"
                     /locus_tag="ACJFD7_001129"
     CDS             complement(<1..761)
                     /gene="purU"
                     /locus_tag="ACJFD7_001129"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008864 - formyltetrahydrofolate
                     deformylase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HGG0859943.1"
                     /translation="MISVLKICTKDQKGLIYRISDVIFKYHINIVKNDEFVGEGMFFF
                     RALLEGEFDKEAFIGTLEAMLGQEALIELCEKRKKDIVVFATKESHCLGDLLIKHYSN
                     ELEANIKAVISNHNSLKDLVEKFEIPYHFISAENLDRKEQENQILKCLEQYKFDYLVL
                     AKYMRILSPDFVRHFEGKIINIHHSFLPAFIGANPYKQAFERGVKIIGATAHFVNNNL
                     DEGPIITQAVSPVNHEFTWQDMQQAGRNIEKDVLS"
     gene            complement(758..1876)
                     /gene="cca"
                     /locus_tag="ACJFD7_001130"
     CDS             complement(758..1876)
                     /gene="cca"
                     /locus_tag="ACJFD7_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HGG0859944.1"
                     /translation="MQISKISLKNNPDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKI
                     CDYDIELYDIKPKDFEKIMQKLGAQGFGRSFFVYKFKNYDLALARTENKTSHGHKGFE
                     VQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLGAGFLRHIDKQSFQEDSL
                     RVLRAVVFASRFNFKITSESLKLMQSMDITDLSKDRINAELYKFFKSPRLDVGYRYLQ
                     ELDLEKQIFGFESVFKSLEFQNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKKTKL
                     KKEYLKYANQAFYLDDISDFELAKIAFEMPLKEWLGLWSKKRIEQAKRLRLYENKFES
                     KILAKDFINAGFCGKILGLKIQEARENELKEYIKGLAK"
     gene            complement(1845..2336)
                     /locus_tag="ACJFD7_001131"
     CDS             complement(1845..2336)
                     /locus_tag="ACJFD7_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate:acceptor oxidoreductase"
                     /protein_id="HGG0859945.1"
                     /translation="MNLEDLAKKTISEVSSIMEEQRRQNEILKEQELNRKTEIKDELP
                     PMGFVCEELDTPQDLEDKISMAKFEEEQKIQNNIEISTQENEEFKKEEPFLQSEILNP
                     SVMTEVQTLNEDIFLKHLRERILVLFEGLNSIKKDDLENRLNLTINFLEFLLANIEDK
                     LKK"
     gene            complement(2333..2581)
                     /locus_tag="ACJFD7_001132"
     CDS             complement(2333..2581)
                     /locus_tag="ACJFD7_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HGG0859946.1"
                     /translation="MMKNTVTEASIYEAQGLKDEALEIYKNILKEDPDNQNAIDAVRR
                     LSGFRSKHKDLNTQMLDFFINMKSDEEINEFKRWLIKI"
     gene            complement(2660..2833)
                     /gene="tatA2"
                     /locus_tag="ACJFD7_001133"
     CDS             complement(2660..2833)
                     /gene="tatA2"
                     /locus_tag="ACJFD7_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA2"
                     /protein_id="HGG0859947.1"
                     /translation="MVFLIPLLIIIGVIFGIDYVYFKNQDLKVQVKKEQKELNSSLEK
                     EKKEYIEKLFKTK"
     gene            complement(2846..3184)
                     /gene="napD"
                     /locus_tag="ACJFD7_001134"
     CDS             complement(2846..3184)
                     /gene="napD"
                     /locus_tag="ACJFD7_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HGG0859948.1"
                     /translation="MNNLSSVLILAKEEYINDLKKAISEIPFCSVELCENEKIIVVIE
                     SENLEDELNSYKMLEKLPNIISINMVFSYQDLNDDIQKAINSGAIETIEKNENAENIR
                     YYGSVFNQFS"
     gene            complement(3177..4091)
                     /gene="napL"
                     /locus_tag="ACJFD7_001135"
     CDS             complement(3177..4091)
                     /gene="napL"
                     /locus_tag="ACJFD7_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HGG0859949.1"
                     /translation="MKKFLFILSLFCVLSYAYELKLNANITALKLDKQNLYIGTDKGE
                     ILQYNIKDKSLKELLSLPKIKNYYGDDFAKIYNIDIFKHTLLILSEGDFGAKNLSFYK
                     ENLQIKKLEENSIIKAFFINENTYLLISIGSEIELIDKSLKNIKKFNFSHSSLNDAVL
                     NEDKSRLIAGFESGEVELFDLKNWKMLKNYDKMHKDNIYQVDFKNNVILSCGTDRRIG
                     VVKNEEQNFLQKDFLIYTCALSPNGELAVYSDNEAGVSEVFSTSDFKPVKTFNNENLM
                     SEFIIFLNNKDFIVSGFGDSIMFRSIDE"
     gene            complement(4096..4620)
                     /gene="napB"
                     /locus_tag="ACJFD7_001136"
     CDS             complement(4096..4620)
                     /gene="napB"
                     /locus_tag="ACJFD7_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HGG0859950.1"
                     /translation="MMKKKLVLLGSAAVVFFAACAMNSGVSSEQIGLRKASLENENKV
                     NLVEANFTTLQPGESTRFERSYENAPPLIPHAIEDLLPITKDNNMCLSCHDKAIAADA
                     GATPLPASHYYDFRHNKTTGDVISDSRFNCTQCHVPQSDAKPLVGNSFKPEFKNEQLK
                     SRSNLIDVINEGVK"
     gene            complement(4617..5399)
                     /gene="napH"
                     /locus_tag="ACJFD7_001137"
     CDS             complement(4617..5399)
                     /gene="napH"
                     /locus_tag="ACJFD7_001137"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HGG0859951.1"
                     /translation="MMKYLIARRIVQLGILALFSFKATDFILQGNLSSSRLFNTIPLS
                     DPFAVLQIILASWSIDLVALIGALIIFFIYGLLLGRVFCSWVCPVNLITDFAAFVRNK
                     LTLNNKFLILPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFVA
                     FILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICPEKQ
                     VLWMVGKESTSVKSGECIRCARCIEVCNDDALNFNIFDLRNK"
     gene            complement(5396..6136)
                     /gene="napG"
                     /locus_tag="ACJFD7_001138"
     CDS             complement(5396..6136)
                     /gene="napG"
                     /locus_tag="ACJFD7_001138"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HGG0859952.1"
                     /translation="MKGRREFFVSAFKAACLCTGGGFLANLALKADDNYALRPPGAED
                     EARFLSKCIRCGLCVKACPYDTLKLASLLDSPKNGTPFFKAREIPCYLCKDIPCIREC
                     PTDALDKKHLEQGIESLKMGIAIVDSASCVAHWGIQCDACYRACPLIDRALKLELKRN
                     ERTAKHAFLLPSVDHEVCVGCGLCELACITEKPAIRVLPREYVLGKAGSHYVKGWDEK
                     DEGRIKNADTSKHFDAKKATNYLNDGEL"
     gene            complement(6154..8928)
                     /gene="napA"
                     /locus_tag="ACJFD7_001139"
     CDS             complement(6154..8928)
                     /gene="napA"
                     /locus_tag="ACJFD7_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009325 - nitrate reductase complex
                     [Evidence IEA];
                     GO_function: GO:0008940 - nitrate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_process: GO:0042126 - nitrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HGG0859953.1"
                     /translation="MNRRDFIKNTAIASAASVAGLSVPSSMLGAQEEDWKWDKAVCRF
                     CGTGCGIMIARKDGKIVATKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLLRMNE
                     KGEFDKKGKFQQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALKLA
                     KAGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHP
                     ILWSRVSDRKLSNLDKVKVVNLSTFSNRTSNIADIEIIFKPNTDLAIWNYIAREIVYN
                     HPEAMDMKFIKDHCVFATGYADIGYGMRNNPNHPKFKESEKDTVEKENVITLDDEEAT
                     SLSYLGVKAGDKFEMKHQGVADKNWEISFDEFKKGLAPYTLEYTARVAKGDDNESLED
                     FKKKLQELANLYIEKNRKVVSFWTMGFNQHTRGSWVNEQAYMVHFLLGKQAKPGSGAF
                     SLTGQPSACGTAREVGTFSHRLPADMVVANPKHREISEKIWKVPAKTINPKPGSPYLN
                     IMRDLEDGKIKFAWVQVNNPWQNTANANHWIAAAREMDNFIVVSDCYPGISAKVADLI
                     LPSAMIYEKWGAYGNAERRTQHWKQQVLPVGAAMSDTWQILEFAKRFKLKEVWKEQKV
                     DNKLTLPSVLEEAKAMGYSEDDTLFDVLFANKEAKSFNLNDAIAKGFDNTDVKGDERK
                     IQGSDGKEFTGYGFFVQKYLWEEYRKFGLGHGHDLADFDTYHKVRGLRWPVVNGKETQ
                     WRFNTKFDYYAKKAAPNSDFAFYGDFNKMLTNGDLIAPKDEKEHSIKNKAKIFFRPFM
                     KAPERPSKEYPFWLATGRVLEHWHSGTMTMRVPELYRAVPEALCYMSEKDGEKLGLNQ
                     GDLVWVESRRGKVKARVDMRGRNKPPVGLVYVPWFDENVYINKVTLDATCPLSKQTDF
                     KKCAVKIYKA"
     gene            complement(9175..9702)
                     /gene="tpx"
                     /locus_tag="ACJFD7_001140"
     CDS             complement(9175..9702)
                     /gene="tpx"
                     /locus_tag="ACJFD7_001140"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA];
                     GO_function: GO:0016684 - oxidoreductase activity, acting
                     on peroxide as acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HGG0859954.1"
                     /translation="MSTVNFKGNPVKLKGNSVEVGADAPKVNLKAKDLSVIEIGAAGK
                     TQIILSVPSLDTPVCATEAREFNKKVASYNGAEVIVVSMDLPFAMGRFCSTEGIENLS
                     VASDFVAKEFGEKYGVLINEGALEGLLARAVFVIKEGKVAYKELVNEITEMPDIAKLD
                     AFFGGSSCCGGCGCH"
     gene            complement(9801..10541)
                     /gene="peb2"
                     /locus_tag="ACJFD7_001141"
     CDS             complement(9801..10541)
                     /gene="peb2"
                     /locus_tag="ACJFD7_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family adhesin PEB2"
                     /protein_id="HGG0859955.1"
                     /translation="MKKILILSLAAASFLNAEILVYGPGGPAPVLKELALKFEEKTKE
                     KVIVTAGPTPAWIDKAKENADLIFSGNTSMMDDFAKKIPSLSLENLSVLNVRPSGIIV
                     RPNNPKNIKNFEDILKDGINVMVVDGAGQVGLYEDMALKSAKRENLVKLRKNIKIYAK
                     NSKAAVDEWNNNPNIDALIIWSHWAKALGDDKALFIKDKNAVIYRAAEIAPTKKGLEN
                     KKALEFVDFIKSKEAQKVWKKYTWKEVK"
     gene            complement(10582..>12606)
                     /locus_tag="ACJFD7_001142"
     CDS             complement(10582..>12606)
                     /locus_tag="ACJFD7_001142"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HGG0859956.1"
                     /translation="LSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKG
                     VAPQKIMLLTFTNKASKEMIGRLGKFFDKNITSKILAGTFHSTAYTLLRNADKNIALK
                     QASELKTLFKSVYEKRTFRHLSDIKPYQSSYLYDLYSLFQNKAHNQDFYTWFCQNYED
                     QSIYAEIYEDILKEYDNEKKRFNYVDFNDLLINLKDLLKEEKYEFDEILVDEYQDTNT
                     LQSSLIEAFHSKSLFCVGDYDQSIYAFNGADINIIGGFKDRFKDAKIFSLNKNYRSSR
                     SILALANKVILNNERLYPKELIVTRNDEFKAPSLLTFEELFDQYQNIAKMILTSGVSL
                     EEIAVIFRNNSSADGVEVALREQGIASVRKGSGSFFESLEVKAFSSMLALVVNPKDIM
                     AFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRNYQLGLF
                     ADLEELASETRFKFESEFDAHPILKLSKINDLCARNLEKIYLFLKKAMEIKHSLTLVN
                     LICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDIYK
                     YYNFLTLGASEMSSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMGGSLEE
                     ERRLFYVAVTRAKNILYLSYAKYDKNKKTSFAPSRFLIEAGLCKGELTID"
BASE COUNT         4178 a         2446 c         1471 g         4511 t
ORIGIN      
        1 tttgaaagaa catctttttc tatatttcta cctgcttgct gcatatcttg ccaagtaaat
       61 tcatggttta caggcgaaac agcttgagtg ataataggac cttcatcaag attattattt
      121 acaaaatgtg ccgtagctcc aattatttta acccctcttt caaaggcttg tttataagga
      181 tttgctccta taaatgcagg taaaaaagaa tggtgaatat ttataatctt gccttcaaaa
      241 tgcctaacaa aatcaggaga taaaattcgc atatattttg ctaaaaccaa ataatcaaat
      301 ttatattgtt caagacattt taaaatctga ttttcttgct ctttacgatc taaattttca
      361 gcgctgataa aatgataagg aatttcaaat ttctcaacta aatcctttaa agagttgtga
      421 tttgaaatca cagctttgat atttgcttca agttcgttac tataatgctt tattagcaaa
      481 tctcccaaac aatgactttc tttagtagca aaaacaacaa tatctttttt tctcttctcg
      541 caaagctcta tcaaggcttc ttgtccaagc atagcctcaa gcgttcctat aaaagcttct
      601 ttatcaaact caccttctaa aagagcacga aaaaaaaaca ttccttcgcc tacaaattca
      661 tcgtttttta ctatattgat atgatattta aaaataacat cagaaattct atagattaaa
      721 cctttttgat ctttggtgca aatttttaat acagaaatca tttagctaaa ccttttatat
      781 attcttttag ttcattctct cttgcttctt gaatctttaa accaagaatt ttaccacaaa
      841 atccagcatt tatgaaatct tttgctaaaa ttttactttc aaacttattc tcataaagtc
      901 ttaatctttt agcttgctca atacgctttt tactccaaag tccaagccat tccttcaaag
      961 gcatttcaaa agcaattttt gctagttcaa aatcacttat atcatcaaga taaaaagctt
     1021 gatttgcgta ttttaggtat tcttttttaa gtttggtttt tttaaaaaat atatcttttt
     1081 ctaaattaaa aaaattcaaa tacaaataca agaataaagc atcgcttttt acaaattctc
     1141 tactttgtct gagtaaattt tgaaattcca aactcttaaa aacactctca aagccaaaaa
     1201 tctgtttttc taagtcaagt tcttgcaaat atctatagcc aacatcaagt ctagggcttt
     1261 taaagaattt ataaagctcc gcattgatcc tatctttgct aagatcagtt atatccatac
     1321 tttgcatcaa tttcaagctt tcactagtta tcttaaagtt aaaccttgaa gcaaatacta
     1381 ccgctcttaa tactcttaaa ctatcctctt gaaagctttg tttgtcaata tgccttaaaa
     1441 agcctgctcc tagatctttt aatcctccat aaaaatctaa aaactcatcg ttaaaaagat
     1501 taatcatcat agaatttatg gtaaaatcgc gtcttttggc gccaagtttt tcatcattgc
     1561 aaatttgaac ttcaaaacct ttatgtccat ggcttgtttt gttttcggtt ctagcaagag
     1621 ctaaatcata atttttaaac ttatacacaa aaaaacttct tccaaagcct tgtgcaccta
     1681 atttttgcat aatcttttca aaatctttag gttttatatc ataaagctct atatcatagt
     1741 cgcaaatttt taaacctaaa aacaaatccc taacgctgcc tccaaccaaa tacgctcgtt
     1801 tggtataagg ctttaaaaac tcagcaataa actgtaaatc aggattattt tttaagctta
     1861 tcttcgatat ttgcaagcaa aaactctaaa aaatttatgg tcaagtttaa cctattttca
     1921 agatcatctt tttttatact atttaaacct tcaaaaagaa ctaaaattct ctctctaaga
     1981 tgttttaaaa aaatatcctc attaagcgtt tgaacctctg tcataacact aggatttaaa
     2041 atttcacttt gtaaaaaagg ctcttctttt ttaaactctt cattttcctg agtagaaatt
     2101 tcaatattat tttgtatttt ttgctcttct tcaaattttg ccatagaaat tttatcttct
     2161 aagtcttgcg gagtatcaag ctcttcgcat acaaacccca taggcggtaa ttcatctttt
     2221 atttcagttt ttctatttaa ttcttgttct tttaaaattt cattttgtct tctttgctct
     2281 tccatgatag agctaacttc gctaatggtt tttttagcta aatcttccaa attcatattt
     2341 ttatcaacca ccttttaaat tcattaattt cttcatcgct tttcatatta ataaaaaaat
     2401 ccaacatttg agtgtttaaa tctttatgct tggatctaaa accactaaga cgacgaaccg
     2461 catcgatagc gttttggtta tctggatctt cttttaagat atttttataa atttctaaag
     2521 cttcgtcttt taacccttga gcctcataga tagaagcttc agtgactgta tttttcatca
     2581 ctgtttccta aaatttttct ttaattctag caaaaagctt tttaatttat ctttaagaaa
     2641 ataagatgat ttttaatgtc tattttgttt taaacaattt ttctatatat tctttttttt
     2701 ctttctctaa gctagaattt aattcttttt gttctttttt aacttgcact tttaaatctt
     2761 gatttttaaa atacacataa tcaattccaa aaataacacc aattataata agcaatggga
     2821 ttaaaaatac catatacttt acactttaag aaaattgatt aaatacacta ccatagtagc
     2881 gaatattctc agcattttca tttttttcta tcgtttctat tgcgccgcta ttgattgctt
     2941 tttggatatc atcatttaaa tcttgataag aaaaaaccat attaatgctg ataatatttg
     3001 gcaatttctc aagcatttta taagagttta attcatcttc taaattttca ctttcaatca
     3061 caactataat cttttcattt tcacaaagtt ctacagaaca aaaaggaatt tcagatatag
     3121 ccttttttaa atcatttata tattcttctt ttgctaaaat caaaacacta gaaagattat
     3181 tcatcaatac tcctaaacat tatactatca ccaaagcctg aaacgataaa atctttattg
     3241 tttaaaaaaa taataaactc actcatcaaa ttttcattat taaaagtttt aacaggctta
     3301 aaatcacttg tgctaaaaac ttcactaact ccagcttcat tatcgctata aacagccaat
     3361 tctccattag gacttaaagc acaagtatat atcaaaaaat ctttttgtaa aaaattttgt
     3421 tcttcatttt ttacaactcc tatacgccta tccgttccac aacttaaaat aacattattt
     3481 ttaaaatcta cttgatagat attatcttta tgcattttat catagttttt caacatcttc
     3541 caatttttca aatcaaaaag ttctacttcg ccactctcaa aacctgcaat tagtctactc
     3601 ttatcttcat ttaaaactgc atcattaaga ctagaatggg aaaaattaaa tttttttata
     3661 ttttttaaac ttttatcaat caattctatt tcagaaccaa tagaaatcaa aagataagta
     3721 ttttcattga taaaaaatgc ttttattatg ctattttctt cgagcttttt gatttgtaaa
     3781 ttttccttat aaaaacttaa atttttagca ccaaaatcac cctcgctaag tattaaaagt
     3841 gtatgtttaa aaatatcaat gttgtaaatt ttagcaaaat catcaccata ataattttta
     3901 atctttggca aagataaaag ttcttttaaa cttttatctt taatgttata ttgcaaaatt
     3961 tcacctttat cagtgcctat atataagttt tgcttatcaa gctttaaagc tgttatattg
     4021 gcatttaatt tcagctcata agcataagac aaaacacaaa aaagactcaa aataaaaaga
     4081 aattttttca tttatttact ttacaccctc attaatcaca tcaattaaat ttgaacgact
     4141 ttttaattgt tcatttttaa attcaggttt aaagctattt cccactaaag gttttgcatc
     4201 actttgtgga acatgacact gagtgcaatt aaaacgacta tcgctaatca catctcctgt
     4261 ggttttattg tgtctaaaat cataataatg actagcagga agtggagttg caccagcatc
     4321 tgctgctata gccttatcat ggcagcttaa gcacatattg ttatctttag ttataggtaa
     4381 caaatcttca atagcatgcg gaattaatgg tggtgcattt tcataagaac gctcaaaacg
     4441 agtagattcc ccaggttgta aagttgtgaa atttgcttcc actaaattta ctttattttc
     4501 attttctaaa cttgcttttc taagtccaat ttgttccgaa cttaccccac tattcattgc
     4561 acaagcggca aaaaatacca ctgcagcact tcctaataaa accaatttct tcttcattat
     4621 ttattcctta aatcaaaaat attaaaattc aaagcatcat cattacaaac ttctatacat
     4681 cttgcacacc ttatacactc tcctgatttc acgctagtac tttcttttcc aaccatccac
     4741 aaaacctgtt tttcaggaca aatacggata cattcataac atttagtgca tttatcacta
     4801 tcatgcttta ttttaagcaa agcaaaacga gaaataaaag cataaaaagc tcctagtgga
     4861 caaaaatgtg aacaaattgc cctaggactt aaaaaagtat cgatacaaaa aagtataaag
     4921 gctacaaaaa tccaagaact tgtagcaaaa ataatccctc tatgtatcat tcctatataa
     4981 gaaaaacttt caaacacagg caatgaaaat acaaaagaaa ggactaaaac caagaccaat
     5041 acaaaatagc gtaaattttt aggcaaaatt aaaaatttat tattaagggt taatttattt
     5101 cgcacaaaag cagcaaaatc tgtgattaaa ttaacaggac aaacccaaga gcaaaaaacc
     5161 cttcctaaaa gcaaaccata gataaaaaat ataatcaaag ctcctattaa agccactaaa
     5221 tctatactcc agcttgctag aatgatttgc aaaaccgcaa aaggatcgct taaaggtatg
     5281 gtattaaaaa gtctagaaga acttaaattt ccctgcaaga taaaatctgt agctttaaaa
     5341 ctaaaaagcg ctaaaattcc aagctgaacg atgcgtctag caattaaata cttcatcaca
     5401 gttctccatc atttaaataa ttggttgctt ttttagcatc aaaatgtttt gaagtatctg
     5461 cattttttat acgaccttca tctttttcat cccagccttt tacataatga gatcctgctt
     5521 ttcccaatac atactccctt ggcaaaacac gaatggccgg tttttcagta atacaagcca
     5581 gttcacaaag cccacaacct acacacactt catgatccac actaggtagt aaaaaagcat
     5641 gtttggcggt gcgttcattg cgtttaagct caagttttaa agccctatct atcaaaggac
     5701 aagctctata acaagcatca cattgaattc cccagtgtgc cacacaagaa gcactatcaa
     5761 caatagcaat acccattttc aaagattcta taccctgctc taaatgcttt ttatctaaag
     5821 catcagttgg acattctcta atgcaaggaa tatccttaca aagatagcaa ggaatttctc
     5881 ttgccttaaa aaaaggcgtg ccattttttg gactatctaa caagctagca agctttaaag
     5941 tatcataagg acaggctttt acacaaagcc cacaacgaat acatttgctt aaaaatctag
     6001 cttcatcttc agccccagga ggacgcaaag cataattatc atcggctttt aaagccaaat
     6061 tagccaaaaa tccacctcct gtacataaac atgcagcctt aaaggcacta acgaaaaatt
     6121 ctcttctacc tttcatttaa tcaaaaccct aaattaagcc ttataaattt ttacagcaca
     6181 ttttttaaag tcagtttgtt ttgaaagcgg acaagtcgca tccaaagtaa ccttattgat
     6241 atatacattc tcatcaaacc acggcacata cacaagtcct acaggcggtt tgtttcttcc
     6301 acgcatatct actcttgctt ttactttacc acgacgagat tccacccaaa ccaaatcacc
     6361 ttgatttaag cctaatttct ctccatcttt ctcactcata tagcaaagtg cttcaggcac
     6421 agcacggtaa agctcaggca cacgcatagt catagttcca ctatgccaat gctctaaaac
     6481 ccttcctgtt gcaagccaga atggatactc tttacttggt ctttcaggtg ctttcataaa
     6541 tggcctaaag aaaattttag ccttattttt aatactgtgc tctttttcat ctttaggagc
     6601 tattaaatcc ccatttgtaa gcattttgtt aaaatcacca taaaaagcaa aatctgaatt
     6661 tggagccgct tttttagcat aataatcaaa tttagtatta aatctccact gtgtttcctt
     6721 gccattaacc acaggccatc ttaaacccct tactttatga taggtatcaa aatccgctaa
     6781 atcatgtccg tgtcctaagc caaatttacg atattcttcc caaagatatt tttgaacgaa
     6841 aaagccatag cctgtaaatt cttttccatc actgccttga atttttctct catcaccttt
     6901 aacatcggta ttatcaaagc cttttgcgat ggcatcgttt agattaaagc tttttgcttc
     6961 tttattggca aatagtacat caaaaagtgt atcatcttcg ctataaccca tagcttttgc
     7021 ctcttctaaa acacttggca aggtaagctt attatccact ttttgctctt tccaaacttc
     7081 tttaagctta aagcgttttg caaattctaa aatttgccaa gtatcactca tggcagcacc
     7141 cacaggtaag acttgttgtt tccaatgttg agttcttctt tcagcattac cataagcacc
     7201 ccatttttca taaatcatag cacttggtaa aataagatca gctacttttg ctgaaattcc
     7261 aggataacaa tcacttacaa caataaaatt atccatttct cttgctgctg caatccagtg
     7321 atttgcattt gcagtgtttt gccatggatt attcacttgc acccatgcaa atttaatttt
     7381 tccatcttct aaatctctca tgatattaag ataaggagaa cctggttttg ggttgatagt
     7441 ctttgcagga actttccaaa ttttttcaga aatttctctg tgttttggat tggctacaac
     7501 catatctgca ggcaaacgat gtgagaaagt tcctacttcc ctagctgttc cacaggcact
     7561 tggctgtcct gttaaagaaa aggctccact acctggttta gcttgctttc ctagcaaaaa
     7621 atgtaccata taagcttgtt catttaccca agaacctctt gtgtgttgat taaagcccat
     7681 agtccaaaaa cttacgactt tgcgattttt ctctatgtaa agattagcta attcttgaag
     7741 ttttttctta aaatcttcca aagactcatt atcatcacct ttggctactc ttgcagtgta
     7801 ttctaaagta taaggggcta aacctttttt aaattcgtca aaagaaattt cccagttttt
     7861 atcagccaca ccttgatgtt tcatttcaaa tttatcaccc gctttaacgc caagataaga
     7921 taaagaagta gcctcttcat cgtctaaagt gattacattt tctttttcaa ccgtatcttt
     7981 ttcactttct ttaaattttg gatgatttgg attatttctc ataccataac caatatcagc
     8041 ataaccagtt gcaaatacgc agtgatcttt gataaatttc atatccatag cctctggatg
     8101 attataaaca atctctcttg ctatgtagtt ccaaatagcc aaatctgtat ttggtttaaa
     8161 aataatttca atatcagcaa tatttgaagt acggttagaa aaagtgctta gattaacaac
     8221 tttaacctta tcaagattgc ttagttttct atcacttact cttgaccaaa ggattgggtg
     8281 catttcagcc atattagctc cccaagtgat aatagtatct gtaagctcta tatcatcata
     8341 acagcctgat ggctcatcta caccaaaagt ttgcataaaa ccaaccactg cagaggccat
     8401 acaatgtctt gcatttggat cgatattatt tgttctaaaa cccgcttttg caagctttaa
     8461 agcagcataa ccttcttgga tagtgtattg cccactacca aaaatcccta tacctgtaac
     8521 gccgagttca ttgtaggctt ttttaaattg tttttccatt tcatcaaagg ctctttgcca
     8581 agaaacttgt tgaaatttgc cttttttatc aaattcgcct ttttcattca tgcgaagcaa
     8641 aggcataaca agacgatctt caccatacat gatcttagca ttaaaataac ctttgataca
     8701 attaagtccg cgatttacgg gtgctgcagg atcacctttt gttgctacga ttttgccatc
     8761 ttttctagct atcataattc cacagccagt tccacaaaat ctacaaacag ctttatccca
     8821 tttccaatct tcttcttgcg cgccaagcat agagcttgga acactaagcc ctgcaacact
     8881 agcagcactt gcaatagcgg tatttttaat aaaatccctt ctattcatcc ttattcctcc
     8941 aaaataaaaa aatcatctta ttataaaaaa tgaagtataa aaatctcttg aaattttaat
     9001 aaaaataata attttaaagc tctattttat aggagtttta ttgtcctttt tatattattc
     9061 ttacacaaaa taaatattaa aaataatcaa cttaacaatt aaaatataat caacttaaaa
     9121 taataaaaaa tgaagatata aaaattaagc cctaagaatg ggcttaatca aaaattaatg
     9181 gcaaccacaa ccaccgcagc agctagaacc accaaaaaat gcatcaagtt ttgcaatatc
     9241 tggcatttct gtgatttcat ttacaagttc tttatatgcc actttaccct ctttaatcac
     9301 aaatacggca cgagctaaaa gcccttctaa agcaccttca tttatcaaaa caccatattt
     9361 ttcaccaaat tcttttgcca caaaatcact tgcaacactt aaattttcaa taccttctgt
     9421 actgcaaaat cttcccatag caaaaggtaa gtccatactt actacaatca cttcagcacc
     9481 attgtaactg gctacttttt tattaaattc tctagcctct gtagcacaaa ctggtgtatc
     9541 taagcttgga acacttaaaa tgatttgagt tttacccgct gcaccgattt caatcacgct
     9601 taaatcttta gctttaagat ttaccttagg agcatctgct ccaacttcta ctgaatttcc
     9661 tttaagtttt acaggatttc ctttaaaatt tactgtactc atttaatttc cttttttgat
     9721 attttaaaca ttattgcaat taatgtttta ggagtgatta tatcctataa atattaatta
     9781 ttttttaatt tcactcaaaa ttattttact tctttccaag tatatttttt ccacactttt
     9841 tgagcttcct tactcttaat aaaatctaca aattctaaag cttttttatt ttctaaacct
     9901 ttttttgtag gagcaatttc agctgcacga taaatcactg catttttatc tttgataaat
     9961 aaagctttat catcgcctaa agcctttgcc caatgagacc aaatgattaa agcatcaata
    10021 tttggattgt tattccactc atctacagca gctttggaat ttttagcata aatttttata
    10081 tttttacgta attttaccaa attttctctt tttgcacttt ttaaagccat atcttcataa
    10141 agtccaactt gtcctgcacc atcaaccacc ataacattta tgccatcttt taaaatgtct
    10201 tcaaaatttt taatattttt tggattattt ggacgcacga taatacctga tggacgcaca
    10261 tttaaaacgc ttaaattttc caaacttaaa cttggaattt ttttagcaaa atcatccatc
    10321 attgaagtat tgcctgaaaa aatcaaatct gcattttctt ttgctttgtc tatccaagct
    10381 ggagttggac ctgcggttac aatcaccttt tcttttgttt tttcttcaaa ttttaaagca
    10441 agctctttta gcacaggagc gggaccacct ggaccataaa ctaaaatttc agcatttaaa
    10501 aaacttgctg ctgctaaact taaaattaat atttttttca taaaataaac ctttctttat
    10561 aataatataa aggaaatttt atcaatctat agttaactct cccttgcaaa gccctgcttc
    10621 tataagaaaa cgagaaggag cgaaagaagt ttttttattt ttatcatatt tagcatagct
    10681 taaataaagt atattttttg ccctagttac tgcaacataa aaaagccttc tttcttcttc
    10741 taagcttcca cccattccca taagcttttg attaggaaag cgaccttgtg caagatcaat
    10801 cacaaaaaca agatcaaatt ccaagccctt gcttgcatgt acgctaagca aattaactcc
    10861 tttgccacta ctcatttcac ttgcacctaa agttagaaaa ttataatact tataaatatc
    10921 gctataattt tttgtaagct cttttaagac attgaatttt gtttctattt tttctaaatt
    10981 ttcactcttt cttaataaat ccacctgtcc tgctttattt gttgctcttt tggttgcaag
    11041 ttcttcacaa atttctctat aaaaagaatt ttcacaaatt aaatttacca aagtcaaaga
    11101 atgttttatt tccatagctt tttttaaaaa aagataaatt ttttctaaat ttctagcaca
    11161 taaatcattg atttttgaaa gttttaaaat aggatgtgca tcaaattcac tctcaaattt
    11221 aaaacgagtt tcgctggcta attcttctaa atccgcaaaa agcccaagtt gataatttct
    11281 tttttgatga ttttgcaaat ttacattttt atcaggatct aaaaaacctt ttattaaatt
    11341 tccatgccct aattttaaaa gtgcgtcaaa aatttctttt gctaaaactc cacccacacc
    11401 tttggtatat tgaaccaaat gaataaaagc catgatatct ttaggattta ccacaagagc
    11461 aagcatagag ctaaaagctt taacttctaa actttcaaaa aaacttccac ttccctttct
    11521 cacacttgca atgccctgct cccttaaagc tacttcaacc ccatcagcac ttgagttgtt
    11581 gcgaaaaatc acggcaattt cttccaaact tactccgctt gtaagtatca ttttggctat
    11641 attttgatac tgatcaaata attcttcaaa agtaagcaaa gatggggctt taaactcatc
    11701 atttcttgta acaataagtt cttttggata taatctttcg ttatttaaaa tcactttatt
    11761 agccaaagct aaaatacttc ttgatgaacg gtagttttta tttaaagaaa aaatttttgc
    11821 atctttaaaa cgatctttaa acccacctat gatattaata tccgctccat taaaagcata
    11881 aatactttga tcataatccc ctacgcaaaa caaactttta ctatgaaaag cctctattaa
    11941 ggaactttgc aaagtatttg tgtcttgata ttcatctact aaaatttcat caaattcata
    12001 tttttcttct tttaaaagat cttttagatt gataagcaag tcattaaaat ctacataatt
    12061 aaaacgcttt ttttcattat catattcttt taaaatatct tcataaattt cagcataaat
    12121 actttgatct tcgtagtttt ggcaaaacca agtataaaaa tcttgattgt gcgctttgtt
    12181 ttgaaacaaa gaataaagat catataaata acttgattga taaggtttta tatcacttaa
    12241 atgcctaaaa gttctttttt catagacact tttaaataga gtttttaact cgcttgcttg
    12301 ctttaaggct atatttttat ccgcatttct aagtaaggta taagccgtac tatgaaaagt
    12361 tcctgcaagt attttactgg taatattttt atcaaaaaat ttccctaaac gccctatcat
    12421 ttctttactg gctttatttg tgaaagttaa aagcatgatt ttttgaggtg ccactccctt
    12481 gcttaaaaga taagaaattc ttgcaacaat agtagaagtt tttcccgtcc ctgcacttgc
    12541 aataacaaga ttgtgtccaa aatcagcagt agcagcaaga tattgttcat tatttaattt
    12601 tgaaag
//
LOCUS       DBBXPZ010000049        12029 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.051, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000049 DBBXPZ010000000
VERSION     DBBXPZ010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12029)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12029)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12029
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.051"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            36..332
                     /locus_tag="ACJFD7_001143"
     CDS             36..332
                     /locus_tag="ACJFD7_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HGG0859957.1"
                     /translation="MLLDKLIPTWNEKCSIHDTMIDIQHQKLCELASKVESAVYKFVK
                     REELKEILTELFNYMKEHFSNEEDYMQEIHYPYLNEHKIMHKISFVICLILYKT"
     gene            308..658
                     /locus_tag="ACJFD7_001144"
     CDS             308..658
                     /locus_tag="ACJFD7_001144"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859958.1"
                     /translation="MSYLIQNIKTTNDLKEKLYTVSKKWLLEHILYKDVKVEQYRRSS
                     LTSEDDGEVSFEEVKEEKDDENTVYLYTCECVEQMHDVPFGIHQKIQLKGVKFKCKKC
                     KEAIQFYKKYSENF"
     gene            complement(900..1931)
                     /locus_tag="ACJFD7_001145"
     CDS             complement(900..1931)
                     /locus_tag="ACJFD7_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0069 family protein"
                     /protein_id="HGG0859959.1"
                     /translation="MKKNIVFFEVKGGSDKGEDGYRKDTMPMVNALKAKGWNAEVIFF
                     EVGKKDEIYKYVKENFDGYVSRINPGNLKEENEYFDMLRKLCADKLVGMPHPDAMIGY
                     GAKDALTKLADTDLVPSDTYAYYDIKTFKENFPKSLAKGERVLKQNRGSTGEGIWRVS
                     VEGNVSGGSLPLNTKIKCTEAKDNHVEHRELGEFMDFCEQYIIGDNGMLVDMTFLPRI
                     KEGEIRLLMLYNTPVNVVHKKPAEDADAFSATLFSGAKYRYDKPEDWKTLVDMFLGEL
                     PKVREKLGNYGLPLIWTADFILDTDEKGNDKYVLGEINCSCVGFTSHLELADEVASNI
                     INIVSKTKA"
     gene            complement(2011..2907)
                     /gene="sppA"
                     /locus_tag="ACJFD7_001146"
     CDS             complement(2011..2907)
                     /gene="sppA"
                     /locus_tag="ACJFD7_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HGG0859960.1"
                     /translation="MQILKSFFKALGCGIKFINTYFKTFVLLLIIIWILMPSANSSSN
                     LANLERIDLKGEIFDSSAVLEKIINAKNDSNIKGVLFVIDSPGGAFAPSMELALAIKD
                     LKIKKPVLVYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLSGLANKLGI
                     KEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQSYDLFTGFVAKERALDLNKKDQWA
                     NARVFLAAKAKELGLIDELSNYENAKKELEKLANVSNPVWKEEDKIDKFLNRLEGQAS
                     SLISKSLIEIAYKTNSSFINAR"
     gene            complement(2895..4124)
                     /locus_tag="ACJFD7_001147"
     CDS             complement(2895..4124)
                     /locus_tag="ACJFD7_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HGG0859961.1"
                     /translation="MFIAAARYLFLCDEDFTILENQAFVFEDKILELGELDNLRKKYP
                     KAKIIKTPKNSVILPAFINPHTHLEFSANSTTLHFGEFLIWLKSVINSRSILNAQAKE
                     ELILQSIKKMQKSGIGTIGEISSFGSDLDSCLKASQKGMRIVFFNEILGTNENQVEDR
                     KQEFLKRFENSLKFKNDFFIPAISIHSPYSTHPSLAHFALDLAKKQNLLASTHFLESK
                     AENIWLRESKGGFKKWLENFTLHPKPLYTPKDFVKLFKGVRTLFTHCVYLKEYEWLDK
                     NLHSITHCAFSNRLLSQKNLDLKTALKSGLNIHLGTDGLSSNISLSLLDEMRANLLIH
                     KNFDLLELASKLLQMVTLYPARALNLNLGELKKGKIADFNVFELGECDKKQAPLQFIL
                     NAKEVDKLFIKGKECKF"
     gene            4215..4694
                     /gene="aroQ"
                     /locus_tag="ACJFD7_001148"
     CDS             4215..4694
                     /gene="aroQ"
                     /locus_tag="ACJFD7_001148"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HGG0859962.1"
                     /translation="MKIMIIQGPNVNMLGVREVGIYGAMKMEEIHEQMKLAASQNNVE
                     LDFFQSNFEGEIVDKIQECLGTVDGIIINAAGYTHTSIAIRDAIAAVALPTIEVHISN
                     VYRREEFRQKSLIAPVCSGAIVGFGPFGYHLALMGIIQICEQIKNLRAMQQAQQTNK"
     gene            4697..5170
                     /gene="folK"
                     /locus_tag="ACJFD7_001149"
     CDS             4697..5170
                     /gene="folK"
                     /locus_tag="ACJFD7_001149"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HGG0859963.1"
                     /translation="MLKIQGVKHFEKSRFFPFFSQNIRSFKYLALIGLGSNIEPEKKR
                     FNMLFRVMMDDKRFKILSTSPMLINEAFGFKEQKDFTNAVMLIQTNLHARALLKVLLY
                     YEVKFKRKRTFKNAPRTLDLDLLYFSQKVKRDKWCEVPHKGAKERVSVILPLGMI"
     gene            5180..6634
                     /gene="flhF"
                     /locus_tag="ACJFD7_001150"
     CDS             5180..6634
                     /gene="flhF"
                     /locus_tag="ACJFD7_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0044781 - bacterial-type flagellum
                     organization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HGG0859964.1"
                     /translation="MGQLIHTFTVEDTEQIIPKVKEDYGDKALIITNKQIRPKTLNRS
                     ALYEVMVAIEESDYEEHLKKQGKSLPAKKSSPKPSSTSLAEEKIRSQIPQEDEDVVLD
                     FSNTRLNTNLNTVKNNDLTKKTYQDFPQNKINPHQNKTLGFDDFKEKLSEVSNEISKV
                     TNTPLENYTPNPNYNKKIENFEKQFEKQINKLNDKIDLLADMMWDDKAEARKNLMIPP
                     EFASIYKQAKESGMLENHLEAIMKATIENMPAAMKTNKDAVQRYFHSLLRNILPCRVE
                     SDIKKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQY
                     AKMMKLPIIDSIEPKDLDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAE
                     IDVNLVVSANTKQEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSF
                     FSIGQEVPDDLEVANSDFLVHCILEGFNKGKNNE"
     gene            6627..7493
                     /gene="flhG"
                     /locus_tag="ACJFD7_001151"
     CDS             6627..7493
                     /gene="flhG"
                     /locus_tag="ACJFD7_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis ATPase FlhG"
                     /protein_id="HGG0859965.1"
                     /translation="MNNQANKLRNLMSQNGTKKSQNTHFIAITSGKGGVGKSTISANL
                     ANVLANNGYKVGLFDADIGLANLDVILNVRIQKNLLHVLRGECSLEDILIEVKPNLWL
                     IPGESGDEILKYNDKNIYERFLNQASILDELDFLIIDTGAGIGGNILNFLEMADEVIV
                     VTVPDPAAITDAYATIKTTSKTKENLLMLFNVVKNENEALKVFENIKKVADANIKNPL
                     NLEFLGHLSASKDVSGSIKKRTLFSDENTASSDEIKALASKLLYRLERKVLDNVSNRS
                     FSSFFRKIIERF"
     gene            7512..7868
                     /locus_tag="ACJFD7_001152"
     CDS             7512..7868
                     /locus_tag="ACJFD7_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859966.1"
                     /translation="MRPENYVAFFTVCGFFIGLAFSIISIDEAFDILIFTCFITFMFY
                     VFVHIAIMNFIDVKKISGRIFNKHDYEKTSNNIINDLVIREKKMDIILEKLNEEREEL
                     KKNEFKERRRNAKRAA"
     gene            7849..8541
                     /gene="fliA"
                     /locus_tag="ACJFD7_001153"
     CDS             7849..8541
                     /gene="fliA"
                     /locus_tag="ACJFD7_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HGG0859967.1"
                     /translation="MLKEPPKAYAQMLKKEQDELVLSYMPALRAMAFRLKERLPSSID
                     VNDLISIGVEEMIKLSRRYDKEQNDNFWGFARKRVNGSMLDYLRSLDVMSRNNRKIIK
                     DIDAIMDEYFLEHECEPDDEYLAKKLDLDVEKIKEVRTAHAISYTLPIDEQIELYNED
                     NTLEKIEKEELLEKIHEVLDDLKERDQLIIQLYYYEELSLKEISEILQISESRISQIH
                     KKLLKKLRERLV"
     gene            8541..9620
                     /gene="fliM"
                     /locus_tag="ACJFD7_001154"
     CDS             8541..9620
                     /gene="fliM"
                     /locus_tag="ACJFD7_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HGG0859968.1"
                     /translation="MAEILSQEEIDALLEVVDDNTDTPIASNSKDEKDERNIVVYDFK
                     RPNRVSKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSP
                     TSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYEASRELTDIELNLLDSILR
                     IIMQRLKESWATVTEIYPSIEAKESSPNVVQIVSQNEIVIMVVMEIIIGNSSGMVNIC
                     YPVVHLESILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEF
                     LELKQGDILRLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEI
                     LEKYEEERKAKASVYDEPEEEDEEI"
     gene            9617..10459
                     /gene="fliY"
                     /locus_tag="ACJFD7_001155"
     CDS             9617..10459
                     /gene="fliY"
                     /locus_tag="ACJFD7_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliY"
                     /protein_id="HGG0859969.1"
                     /translation="MINDFLKMFTNECISTIEGLTGKSAEFSEYKEFDVNTSDTLKAP
                     LVYAIFNIANGGKIGILAGAVLMSAIGEWMMGEEEITKNDKLGPDEMDAAKEAIQNII
                     SAFSTTLGAQKDIPKMDFSIESCEFVPESVDFKDFKKLFLYDVKIGDLEEQVSLAMDQ
                     TLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKML
                     LKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITEIGSKKERL
                     EQLR"
     gene            complement(10508..11107)
                     /locus_tag="ACJFD7_001156"
     CDS             complement(10508..11107)
                     /locus_tag="ACJFD7_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HGG0859970.1"
                     /translation="MEKILKILLFLPILALSTKAEWVVKSYQEIKNERVIRQTYEQSC
                     GASSLVTLLNILDDQKKFDELELLKIMSGQELYTDMVSFADLSDAVKKLGYESNSYQI
                     NRESLDRLINIPMLVKIEDDPRFPHFVIIVNHKGNYLQVLDPSHGEYISSKSQFFSIW
                     DRYNKGGYALIVAPKKELKPFKLNTPKSLHFDFSPFSLF"
     gene            complement(11092..11945)
                     /locus_tag="ACJFD7_001157"
                     /pseudo
     CDS             complement(11092..11945)
                     /locus_tag="ACJFD7_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343521.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         4454 a         1862 c         1848 g         3865 t
ORIGIN      
        1 tattaaatta attttaaata caaaaattaa agaaggtgct tttagataaa ctaattccaa
       61 cttggaatga aaaatgcagt attcatgaca caatgattga cattcaacac caaaaacttt
      121 gtgaacttgc aagcaaggtt gaaagtgctg tttataaatt tgtaaaacga gaagaactca
      181 aagaaatttt aacagaactt tttaactata tgaaagaaca ttttagtaat gaagaagatt
      241 atatgcaaga aattcattat ccttatttaa atgaacacaa aatcatgcat aaaatatcat
      301 tcgtgatatg tcttatctta tacaaaacat aaaaaccact aatgatttaa aagagaagct
      361 ttacacagtt tctaaaaaat ggcttttaga acatatactc tataaagatg tgaaagttga
      421 acaatacaga agatcttctt taacttctga agatgatggg gaagtaagct ttgaagaagt
      481 caaagaagaa aaagatgatg aaaatacagt ttatctttat acatgcgaat gcgtagaaca
      541 aatgcatgat gtaccatttg gaattcatca aaaaattcaa cttaagggcg taaaatttaa
      601 atgtaaaaaa tgcaaagaag ccatacagtt ttataaaaaa tattcagaaa atttctaatt
      661 aactatttat gcgttaaaat aataaataaa gtataagtta gacaaagaag gaaatttaag
      721 gataaaaaaa taaaatattt tattttggat aaatttgact attcctatcc tatgctaacc
      781 aaagatacaa aatgctcatt ttgtgaaaat tttttctcga tagaatatag ctcaaactta
      841 aaaacaatag aaaaagaatg tccattttgc aataataaaa tggacattaa gcttaaagac
      901 taagccttag ttttacttac aatattaata atatttgaag ctacttcatc agcaagttct
      961 aaatgagaag taaaacctac acaagaacaa ttaatctcgc ctaaaacata tttatcattg
     1021 cccttttcat cagtatctaa aataaaatca gccgtccaaa tcaatggtaa gccgtaattg
     1081 cctaattttt cccttacctt aggaagctcg cctaaaaaca tatccaccaa agttttccaa
     1141 tcttctggct tatcatagcg atattttgcc ccactaaaaa gcgtagcaga aaaagcatcg
     1201 gcatcttcgg ctggtttttt atgcactaca tttacagggg tgttataaag cattaaaagt
     1261 ctgatttcac cttctttaat gcgcggtaaa aaagtcatat ccacaagcat accattatca
     1321 cctataatat attgctcgca aaaatccata aattccccaa gctctctatg ttctacatga
     1381 ttatccttag cttctgtaca tttgattttt gtgtttaaag gcaaactacc tccactaaca
     1441 ttaccctcta cactcacacg ccaaattccc tctcctgtag agccacgatt ttgttttaaa
     1501 accctttcac ctttagccaa actttttgga aaattttctt taaaagtctt aatatcatag
     1561 taagcataag tatcgcttgg aacaagatca gtgtctgcta attttgtaag tgcatcttta
     1621 gcgccataac ctatcatagc atcaggatga ggcataccta caagcttgtc ggcacaaagt
     1681 tttcttaaca tatcaaaata ctcattttct tctttaagat taccaggatt gatgcgagaa
     1741 acataaccat caaaattttc ttttacatat ttgtaaattt catctttttt acccacttca
     1801 aaaaaaatca cctcagcatt ccaaccctta gcttttaagg catttaccat aggcatggta
     1861 tcttttctat aaccatcttc acctttatca ctcccacctt taacttcgaa aaaaacaata
     1921 ttttttttca ttatttttac tccttatcta agatataaat aattattgcg taaacatatt
     1981 gcaaaaatta aataaaaata tttatatatt ttatctagca tttataaaac tgctattagt
     2041 cttataagcg atttcaatta agcttttact tatcaagctt gatgcttgtc cttctaggcg
     2101 gttaagaaat ttatcaatct tatcttcttc tttccaaaca ggatttgaaa cattagcaag
     2161 tttttcaagc tcctttttag cattttcata attactaagc tcatctataa gaccaagctc
     2221 cttagccttg gcagctaaaa acactcttgc atttgcccat tgatcttttt tgttaagatc
     2281 taatgctctt tccttggcaa caaaacctgt aaaaagatca taactttgat caattaaacc
     2341 ctgtaaaaaa tttctttcat tctcattcca agctcttgca aaagttccag cacttttaaa
     2401 ttcacccgct tgaatagttt gttctttaat accaagttta ttagccaatc cacttaaatc
     2461 agctccttgc ataatcacac cgatagagcc tataaagctt gccggattgg ctaaaatttt
     2521 atttgctcca actcctgcta aataacttcc acttgccata gttccacttg cataaacaag
     2581 cacaggcttt ttaattttta aatcctttat agctagagct agttccatac taggagcaaa
     2641 agctccacca ggagagtcta taacaaaaag cactccttta atattgctat catttttagc
     2701 attgataatt ttttccaaaa ccgcagagct gtcaaaaatt tcacccttta aatcaatgcg
     2761 ttctaaattt gcaagattag agcttgaatt tgcactaggc attaaaatcc atataataat
     2821 caacaataaa acaaaggttt taaaataagt attgataaat tttataccgc atcctaaagc
     2881 cttaaaaaat gattttaaaa tttgcattct tttcctttta taaataattt atctacttcc
     2941 ttagcattta aaataaactg caaaggagct tgctttttat cacattctcc tagctcaaat
     3001 acgttaaaat cagcaatttt acctttttta agctctccta aatttaaatt taaagccctt
     3061 gcaggataaa gtgttaccat ttgcaaaagc ttagaggcta actctaataa atcaaaattc
     3121 ttatgtataa gcaaattcgc gcgcatttca tcaagtaaag acaatgaaat atttgagcta
     3181 agtccatcgg ttcctaaatg gatatttaat ccacttttta aagccgtttt taaatctaag
     3241 tttttttgac ttaaaaggcg atttgaaaat gcacaatgtg taatagaatg taaattttta
     3301 tctaaccatt catattcttt tagataaaca caatgcgtaa aaagagtcct tactccttta
     3361 aaaagtttaa caaaatcctt tggtgtataa agaggcttag gatgaagtgt gaaattttca
     3421 agccattttt taaaaccccc tttagactct ctaagccaga tattttcagc cttactttct
     3481 aaaaaatgcg tactagctag taaattttgc tttttagcta aatcaagagc aaaatgagcc
     3541 aaactaggat gagttgaata gggagaatga atcgaaattg ccggaataaa aaaatcattt
     3601 ttaaatttca aagaattttc aaatcttttt aaaaattctt gttttctatc ttcaacttga
     3661 ttttcatttg tacccaaaat ttcattaaaa aatactatac gcataccctt ttgactagcc
     3721 tttaagcaag aatctaaatc actcccaaaa cttgaaattt cacctatagt gcctataccg
     3781 cttttttgca tttttttaat gctttgaagt attaattctt ctttggcctg tgcatttaat
     3841 atggaacgag aatttataac acttttaagc caaattaaaa attctccaaa atgtaaagtt
     3901 gttgaatttg cactaaattc taagtgcgtg tgaggattta taaaagcagg taaaataacc
     3961 gaatttttag gtgttttgat gattttagcc ttgggatatt tttttcttaa attatccaat
     4021 tcacccaatt ctaaaatttt atcttcaaaa acaaaggctt gattttctag tatcgtaaaa
     4081 tcttcatcgc ataaaaaaag atatcttgct gcagctataa acacgatttt cctttcaaaa
     4141 attacattgt agcaaaaatt tatttttaaa atgttataat aaaaggttaa aaataaattt
     4201 ttaaggttaa atccatgaaa ataatgatta tccaaggccc aaatgttaat atgcttggtg
     4261 taagagaagt aggaatttat ggtgctatga aaatggaaga aattcatgag caaatgaaac
     4321 ttgcagcatc gcaaaacaat gtagaacttg actttttcca aagtaatttt gaaggtgaaa
     4381 tcgtagataa aattcaagaa tgccttggaa cagttgatgg aattattatc aatgcagcag
     4441 gctatactca tacttcaata gctattcgcg atgctattgc agcagtagcc ttgcctacaa
     4501 ttgaagtaca tattagcaat gtttatcgca gagaagaatt tcgtcaaaaa agtcttatag
     4561 ctcctgtatg ttctggagct attgttggtt ttggtccttt tggctatcac ttggctttaa
     4621 tgggcataat tcaaatttgt gaacaaataa aaaatttgcg cgcgatgcaa caagcacaac
     4681 aaacgaataa ataataatgc taaaaattca aggagtaaaa cactttgaaa aaagtcgttt
     4741 ttttcctttt tttagtcaaa atatacgatc ttttaaatat ttagctctta taggcttagg
     4801 aagcaatata gagcccgaaa aaaaaagatt taatatgctt tttcgagtaa tgatggatga
     4861 taaaagattt aaaattttat ccacatctcc tatgttgata aatgaagcct ttggttttaa
     4921 agagcaaaaa gattttacca atgctgttat gttgatacaa actaatttgc atgcacgagc
     4981 acttttgaaa gttttgcttt actatgaagt aaaatttaaa cgcaagagaa ctttcaaaaa
     5041 cgctcctaga acgcttgatt tagatctttt atacttttca caaaaagtca agcgtgataa
     5101 gtggtgtgag gtgcctcata aaggggctaa agaaagagtg agtgtaattt tgcctttagg
     5161 catgatataa ggaatataaa tgggacaact tatacatact tttactgttg aagatacaga
     5221 acaaattata cccaaagtaa aagaagatta cggagataaa gctttaatta taacaaataa
     5281 acaaattcgt cctaaaacct taaatcgcag tgcgctttat gaggttatgg tagccataga
     5341 agaaagcgac tatgaagaac acttaaaaaa acaaggaaaa tctttacctg caaaaaaaag
     5401 ctcgccaaaa ccatcttcta cctctcttgc agaagaaaaa attagatctc aaatccctca
     5461 agaagatgaa gatgtagtct tggatttctc aaacactcgc ttaaatacaa atttaaacac
     5521 tgtaaaaaac aatgacttaa ctaaaaaaac ctatcaagat tttccacaaa acaaaatcaa
     5581 ccctcatcaa aataagactc taggctttga tgatttcaaa gaaaaactaa gtgaagttag
     5641 caatgaaatt tctaaagtca caaacacacc tttagaaaat tacaccccta atccaaatta
     5701 taataaaaaa atagaaaatt ttgaaaagca atttgaaaaa caaatcaaca agcttaatga
     5761 taaaatagat cttcttgcag atatgatgtg ggacgataaa gctgaagcta gaaaaaatct
     5821 tatgatacct cctgaatttg caagtattta taaacaagcc aaagaaagtg gaatgcttga
     5881 aaatcatcta gaagcgatta tgaaagcaac tatagaaaat atgccagctg ctatgaaaac
     5941 caacaaagat gcggttcaaa gatattttca ctcactttta agaaatatct tgccttgtcg
     6001 tgttgaaagc gatataaaaa aacaaaaaat catgatgcta gtaggcccaa caggagtcgg
     6061 aaaaacaaca accttagcta agttagcttt tcgctatgct tatggagata agcgttataa
     6121 aacaggtatt attacgcttg atacttatag aatcggtgcg gttgagcaac tttttcagta
     6181 tgcaaaaatg atgaaacttc ctattattga tagcatagaa ccaaaggatt tagatgaagc
     6241 gataaaaagc ttaaataatt gcgaagtaat tttagttgat actataggaa attcacaata
     6301 cgatcaaagc aaacttgcta aaactaaaga atttttaatg cactcaaatg cagaaattga
     6361 tgtaaattta gtggtttctg caaacaccaa acaggaagat ttaatggaaa tttataaaaa
     6421 tttttcattc ttaaatattg atactttgat tattactaaa tttgatgaaa caaaggtttt
     6481 tggaaatatc ttctctcttg tttatgaaac aaatattcct ctaagctttt tctctatagg
     6541 acaagaagtg ccagatgatt tagaagtagc caatagtgat tttctagttc attgtatttt
     6601 agaagggttt aacaaaggaa aaaataatga ataaccaagc aaataaactt cgcaatctca
     6661 tgagtcaaaa tggaaccaaa aaatcccaaa acactcattt tatagctatt acaagtggaa
     6721 aaggtggcgt tggaaaaagt acgattagcg cgaatctagc caatgtttta gcaaataatg
     6781 gctataaagt tgggcttttt gatgctgata ttggcttggc aaatttggat gtcattttaa
     6841 atgtacgcat acaaaaaaat ctcttgcatg ttttacgcgg agaatgctcc ttggaagaca
     6901 ttttaataga agttaagcca aatttatggc tcatcccagg cgaaagtgga gatgagattt
     6961 taaaatataa tgataaaaat atttacgaga gatttttaaa tcaagcaagt attttagatg
     7021 aacttgattt tcttattatc gacacaggcg cgggtattgg tggaaatatt ttaaattttt
     7081 tagaaatggc tgatgaagtt atagtagtaa ctgttcctga tcctgcagca atcactgatg
     7141 cgtatgcaac cataaaaaca acttctaaga caaaagaaaa tttactaatg ctctttaatg
     7201 ttgtaaaaaa tgaaaatgaa gctttaaaag tttttgaaaa tattaaaaaa gttgcagatg
     7261 caaacattaa aaatccttta aatttagaat tcttaggtca tttaagcgct tctaaagatg
     7321 taagtggtag tattaaaaaa agaactttat ttagcgatga aaacacagcc tcaagtgatg
     7381 agattaaagc cctagcttcc aagcttttat atagattgga acggaaagtg cttgataatg
     7441 tttcaaatcg tagtttttca agttttttta gaaaaattat tgaaagattt tagcaataaa
     7501 gagaagagat tatgaggcca gaaaattacg tagcattttt cactgtttgt ggatttttta
     7561 taggacttgc atttagcatt attagtatag atgaagcctt tgatatactg atttttactt
     7621 gttttattac ttttatgttt tatgtttttg ttcatattgc tattatgaat tttatagatg
     7681 taaagaaaat tagtggcaga atctttaata aacacgatta tgaaaaaact agcaataata
     7741 ttatcaacga tttagttatt cgtgaaaaga aaatggatat aattttagaa aagctcaatg
     7801 aagaaagaga agagctaaag aaaaatgaat tcaaagaaag acgaagaaat gctaaaagag
     7861 ccgcctaaag cttatgcaca aatgctaaag aaagagcaag atgagcttgt gctttcttac
     7921 atgccagctc tgcgtgctat ggcttttaga ctaaaagaac gcttgccttc aagtatagat
     7981 gttaatgatc ttattagcat aggcgttgaa gaaatgataa agctttcacg ccgttacgat
     8041 aaagaacaaa atgataactt ctggggtttt gcaagaaaaa gagttaatgg ctctatgctt
     8101 gattatctta gaagtcttga tgtaatgagt cgaaataatc gtaaaattat taaagatatt
     8161 gatgcaatca tggatgaata ttttttagaa catgaatgcg aacctgatga tgagtatcta
     8221 gccaaaaaac ttgatttaga tgtagaaaaa atcaaagaag taagaacagc tcatgctatt
     8281 agctataccc tgcccattga tgagcaaatc gaactttata atgaagacaa tactttagaa
     8341 aaaattgaaa aagaagaact tttagaaaaa attcacgaag tgctagatga tcttaaagag
     8401 cgcgatcagt taattattca gctttattat tatgaagaat taagcctaaa agaaatcagt
     8461 gaaattttac aaatcagtga aagcagaatt tcacaaattc acaaaaaact tcttaaaaaa
     8521 cttagagaaa ggctagtgta atggctgaga tactctccca agaagaaatt gatgctctac
     8581 ttgaagttgt cgatgataac accgacacac ccatagcctc aaattcaaaa gatgaaaaag
     8641 atgaaagaaa tatcgttgta tatgatttta agcgtcccaa cagagtttca aaagaacaac
     8701 ttaggacgat taaaggcata catgataaat tagcaagaaa tttagcctct caaatttcat
     8761 cgatgatgag aagtattgtt gaaactaaac ttcattcagt cgatcagatg acttatggag
     8821 agtttttaat gtctttgcca agcccaacaa gttttaatgt tttttctatc aaacctttag
     8881 atggaaactg tgttttagaa atcaatccaa gcatagcttt tcctatgata gacaggcttt
     8941 taggtggtca aggcgatagc tatgaagctt cgcgtgagct tacggatatt gagcttaatt
     9001 tacttgattc tattttgcgt atcattatgc aaagacttaa agaaagctgg gctaccgtaa
     9061 ctgaaattta tcctagtata gaagctaaag aatcaagtcc aaatgttgtg caaatcgtat
     9121 ctcaaaatga gattgttatc atggtagtaa tggaaatcat cataggaaat tcaagcggaa
     9181 tggtaaatat ctgctatcct gtagtacatt tagaaagtat attaagccgt ttagcaaacc
     9241 gtgatattat gatgggtgaa acctcagcca aaaaatcacg taacaaagag cttaaaactt
     9301 taatcggtcg tgctgaagtg gtatatgagg caattttagg aaaaacctta attaatgttc
     9361 atgaattttt agaacttaaa caaggcgata ttttaaggct tgatagagaa gcagacgata
     9421 aagctatagt aagtatcgat aaaaaagatg ttttcttagc acaaattgga ttgcatcgtt
     9481 ttagaaaatc tattaaaatt ttagaactta tacgcacaga taaagatgaa atcaaagaaa
     9541 ttttggaaaa atacgaagaa gagcgtaaag ctaaagccag tgtttatgat gagcctgaag
     9601 aggaggatga agaaatatga tcaatgattt tttaaaaatg tttacaaatg aatgcatcag
     9661 caccattgaa ggtttaacag gaaaaagtgc tgaatttagc gaatataaag aatttgatgt
     9721 caatacaagc gatactttaa aagcaccttt agtgtatgct atatttaata tagcaaatgg
     9781 tggaaaaata ggaattttag ctggtgctgt tttaatgagt gctattggtg aatggatgat
     9841 gggtgaagaa gagatcacca aaaacgataa actaggtcct gatgaaatgg atgcagctaa
     9901 agaagccatc caaaatatca tttcagcatt ttctacaacc ttaggagccc aaaaagacat
     9961 tccaaaaatg gattttagca tagaatcttg tgaatttgtg cctgaaagcg tagattttaa
    10021 agattttaaa aaattatttt tatatgatgt aaaaataggc gatttagaag aacaagtttc
    10081 tttagccatg gatcaaacac tccataacat cctaagcggg aaacctgctg aaacaggaaa
    10141 tacaagcact gattctaatc acaatactga agaaaaagcg ataatgctta gcgaagagct
    10201 taaaaatatc aatcttatca tggatgtgcg tttgcctgtt cgtgtgcgta taggcaataa
    10261 aaaaatgctt ttaaaagatg ttttaactat ggatataggt tcagttgtgg agcttaatca
    10321 acttgcaaac gatccgcttg aaattttaat tggggataaa agaattgctt atggcgaggt
    10381 agtaattgtc gatggtaact tcggcgttca aattacagaa attggttcta aaaaagaaag
    10441 attagaacaa ctaagataaa aagttttagc ctacaaatta agaataataa atataaacga
    10501 attaaaacta aaacaaacta aaagggctga aatcaaaatg taaagatttt ggagtattta
    10561 acttaaaagg ttttagctct tttttaggag caacaattaa agcataacca cctttattat
    10621 atctatccca aatactaaaa aattgacttt tagaacttat atattctcca tgacttggat
    10681 caagcacttg taaataatta cctttatgat tgacaattat aacaaaatgt ggaaagcgcg
    10741 gatcatcttc aatttttaca agcattggaa tatttataag cctatctaaa ctttccctat
    10801 tgatttgata ggaattgctt tcataaccta gttttttaac tgcatcgctt aaatctgcaa
    10861 agcttaccat atccgtataa agttcttgtc cgctcataat ctttaaaagt tcaagttcat
    10921 caaacttttt ttgatcatca agtatattaa gtaaagttac taaagatgaa gccccacaag
    10981 attgctcgta agtttgtctt attactcttt cgtttttaat ttcttgataa gacttaacta
    11041 cccattcggc ttttgtactc aaagcaagaa tgggtaaaaa taataaaatt tttagaattt
    11101 tttccataag cttatcccaa atatgctatc aggtgaagca gagcttcctc caaaactagc
    11161 attaacagaa actgcggtat ctgaattaat gctataagta gaacctaaac ttaaagttgg
    11221 aatagaacgc acttcagaat tttgataacc attaattttt tgctcggttt gaaatctttg
    11281 ctctgctcct aaatctaaag taattttagg acttagaata atagataaat ccccacccac
    11341 ataaatacta tttccatact ctattttaag ggttttaaat tttcttgatt gattataacc
    11401 aaaacggtat aaatgctata aactacagga tcgctatatc ccctcaaact agcttgtaag
    11461 ctttgtgatt ttagataaaa gtttttggtt tgattgattg ctttttctct ttgaacgact
    11521 gcagtttgaa aggtaatttg tggaattaaa tctgcaatgc tatcacctgt ataaataaaa
    11581 cctagccata aactatcaaa acctattctg tttttactag aatactcatt tgtaaaaaag
    11641 tttgtatatt cttgtcttgc ataacttccg cctcctgaaa taagtatgtc aaacttaggt
    11701 gttatggtat aaatgaaagt ttgagttaaa aacacttgct ttgtatcatt ccaaattgta
    11761 ggatctccgc ctattattat attaggataa agagaatacg agtttgcatt tcctgtgcta
    11821 agcaaagaaa agcttgtaat gcttcttaag cctatttgct ttttaaataa actgtctata
    11881 tttagttcat cactagcaaa aacacaatta actaaaacca taaatgttaa gaaaattttt
    11941 ttcattgtca atccttacat tttaaataat cagctcaagt taattttaaa atttaatcct
    12001 tgatattgaa aagtttatta ttctaaata
//
LOCUS       DBBXPZ010000050        11598 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.052, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000050 DBBXPZ010000000
VERSION     DBBXPZ010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11598
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.052"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            136..1482
                     /locus_tag="ACJFD7_001158"
     CDS             136..1482
                     /locus_tag="ACJFD7_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CitMHS family transporter"
                     /protein_id="HGG0859971.1"
                     /translation="MEIFLALLGFFSLGLIVWLLLKDYTTPALAFISVSISVACILLI
                     LERLGFGVGVALGVKGGVFDIKTLVVFIKDGVKSVTDTAALFVFSILFFSVLNASGFF
                     TKILNAFLSKMKANVYQVCILTVFIAAAVHLDGSGASTFLIVIPALLPIYERLGIRKT
                     SMLLIITSAMGVMNVIPWGGPTLRAATNIGMDANLLWHHIIPIQIVGLVLSLLLAIWI
                     AKIEIKRGAGAGNLSGINLNIEKSEHHNEKWFWLNLLVAIGVIGLLISGIIPSYICFM
                     IGLAIILPLNYPNLKTAKKVLDRASGGAMLMYITLIGAGILIGVFDKSGIMEKMGVLI
                     LNFVPDYLGAYIPLMVGILAVPMAIIFCTDSYFYGVMPIVLSVTKAFGAEPLTIAIIM
                     VIARNCATFISPVVPATLLGCGLAEVNIKDHIKRSFFYIWGISIICLIFAEVAGII"
     gene            1665..3662
                     /locus_tag="ACJFD7_001159"
     CDS             1665..3662
                     /locus_tag="ACJFD7_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0035673 - oligopeptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006857 - oligopeptide transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OPT family oligopeptide transporter"
                     /protein_id="HGG0859972.1"
                     /translation="MMYKKQNLPELTLRGLILGSILTIIFTASNVYLGLKVGLTFSSS
                     IPAVVISMAVLSLFKTSNILENNMVQTQASAAGTLSSVIFVIPGLFMCGYWSEFPLWQ
                     TFMICLCGGGLGVLFTIPLRRTMVVESKLAYPEGRAAAEILKVANKDQSSKKGKQGIK
                     EIALGSFIAAIFSLLSNGFKLAASESNFAFIWNKMAFGFSMGYSLALLGAGYLVGLAG
                     AIALFVGMFLAWGIFTPYLSNFEFDSAKNAVDLASSVWSSKVRLIGTGAIAIAALWTL
                     IELLKPVIEGIKEIVKNVKITNQEKNERTNIDLSLKSIFILFVLMVVGLFITFYSFVE
                     DANLSIYYQMLFSFVGTLVSVLIGFFVAAACGYMAGLVGSSSSPISGIGLIGVIISSI
                     VFLVLGVELFQDPMLSKFAVALAIFTTSVILATAAISNDNLQDLKTGHLVGATPWKQQ
                     VALLVGCVFGALAIVPVLNLLYQAYGFVGAMPREGMDASSALAAPQANLMSTIAQGIF
                     HHNIEWGYMAFGVFVGILMIIIDKILKGTQKMSLPPLAVGIGIYLPPAINIPLVIGGI
                     LKYIVMQHLTKKYAKNSHKEEKLASCEQRGTLFASGLIVGESIFGVIIAGITVFSVSM
                     GGSENPLALNLANFHDSELFALIFFVGVVLYFIKRIVKKDA"
     gene            3736..4539
                     /locus_tag="ACJFD7_001160"
     CDS             3736..4539
                     /locus_tag="ACJFD7_001160"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HGG0859973.1"
                     /translation="MENLYALILGIIEGLTEFLPISSTGHMILGTTILGIDIDEFWKS
                     FLIIIQLGSILAVIFVFWRKLFQGLDIWLKLAVGFFPTGVIGLFVAKYLNALFNGWVV
                     VGMLIFGGVVFILIELAHKNKQYRINSLEEISFKQAFCIGIFQSLAMIPGTSRSGASI
                     IGGLLLGFNRKVAAEFSFLLAIPTMIIATAYSIYKEPELLSNANSLIPLGIGFITAFI
                     VAVLVIKFFLKFISKFDFIPFGIYRIILGFVFFYLYYSGILNAGSEFKL"
     gene            4670..6478
                     /gene="thrS"
                     /locus_tag="ACJFD7_001161"
     CDS             4670..6478
                     /gene="thrS"
                     /locus_tag="ACJFD7_001161"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HGG0859974.1"
                     /translation="MEKEVIAYLDNETIIDSQSVKNTNLKEIYFDNSKESLEVIRHSC
                     AHLMAQAIKSLYPEAKFFVGPVIEDGFYYDFRVESKIGEEDLVKIEKKMKELAEAKIE
                     ISKYEITKSEALAKFQNDDLKQEVLLRIPDGAVSIYKQGEFEDLCRGPHAPNTKFLRF
                     FKLTRVAGAYLGGDEKREMLTRIYGTAFADKESLKEYLTIIEEAKKRDHRKLGTELKL
                     FTFDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRLRGYEPVRGPELLKADAWKISGHY
                     ANYKENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSG
                     VLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKA
                     IGDDEIWEIATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQV
                     DFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVG
                     IVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEV
                     AKRSVALRDRRAKEQKNLSLDEFIKLVKEKMSEVHF"
     gene            6475..6993
                     /gene="infC"
                     /locus_tag="ACJFD7_001162"
     CDS             6475..6993
                     /gene="infC"
                     /locus_tag="ACJFD7_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HGG0859975.1"
                     /translation="MSKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLG
                     LDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDIN
                     YKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVALLEKIWTMIENEANRDKEPNFEG
                     RYVNMLVTPKKA"
     gene            7032..8123
                     /locus_tag="ACJFD7_001163"
     CDS             7032..8123
                     /locus_tag="ACJFD7_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HGG0859976.1"
                     /translation="MKENPSFLKEQIITYLGNKRALLSFLNNGFKVAKKELGKDKFSF
                     CDIFSGSGVVSRFAKAHSNYILANDLEDYSKLINECYLANKDKDLLQNIKKYYKNLIQ
                     NLDFQKGFISELYAPKDDDDIKKNERVFYTFKNALYLDTIRQKIENEIPKELRHFFIA
                     PLIYEASVHSNTSGVFKGFYKGKDGIGKFGGEGQNALKRIKGEIELKIPIFSNFSCEF
                     EVMQKDANMLAKELDFFDVVYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPK
                     DWNRSTFNKSKFAQDALFELINDLKARVILLSYNCEGFVKKEIFLKRLSTLGKCRILE
                     QKYNTFRASRNLKNRNIHLHEQLYILVKN"
     gene            8163..11598
                     /locus_tag="ACJFD7_001164"
                     /pseudo
     CDS             8163..11598
                     /locus_tag="ACJFD7_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_172669436.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="S6 family peptidase"
BASE COUNT         3935 a         1307 c         2244 g         4112 t
ORIGIN      
        1 tttttttatt cttgtttata atggttacat tagaaaatat atttttttta aaaagctata
       61 aatttaaaca catataagtt ggagttaaaa tatcctattt tattatcgaa taaaaatgat
      121 acaaaaggat aggatatgga aattttttta gctttattgg gttttttctc gttaggattg
      181 atagtttggc ttttgctaaa agattatact actccagcat tagcttttat aagtgtaagt
      241 attagtgtag cttgtatttt acttattctt gaacggcttg gttttggcgt gggtgtagct
      301 ttaggggtta aaggaggtgt ttttgatatt aaaacattgg ttgtttttat taaagatgga
      361 gtcaaaagcg taacggatac ggcagctttg tttgtttttt ctatactctt ttttagtgtt
      421 ttaaatgcaa gtggtttttt tactaaaatt ttaaatgcat ttttatcaaa aatgaaagct
      481 aatgtatatc aagtttgcat tcttactgtt tttattgctg ctgctgtgca tttagatggt
      541 tcaggtgctt ctacttttct tattgtaata cctgcattat tacctattta tgagcgttta
      601 ggtataagaa agacttcaat gttattgatt attacttcgg ctatgggggt tatgaatgtt
      661 attccttggg gtggtcctac tttaagagcg gctactaata taggaatgga tgcaaatttg
      721 ctttggcacc atattatacc tattcagatt gtaggtttgg tattatccct tcttttggca
      781 atttggattg ctaagataga aataaaaaga ggtgcaggcg caggtaactt gtctggaata
      841 aatttaaata tagaaaaaag cgaacaccat aatgaaaaat ggttttggtt aaatttactt
      901 gtagctattg gagttattgg gcttttaatt agtggtatta ttcctagtta tatttgcttt
      961 atgataggac ttgcaataat tttaccgctt aattatccta atttaaaaac agctaaaaaa
     1021 gttttagatc gtgcaagtgg tggtgcaatg cttatgtata ttactttaat tggtgctggg
     1081 atattaatag gcgtatttga taaaagtggt attatggaga aaatgggtgt tttgatttta
     1141 aattttgttc cagattattt aggcgcttat attcctttga tggtagggat attggctgtt
     1201 ccaatggcaa ttattttttg tacagattct tatttttatg gagtgatgcc tatagttttg
     1261 agtgtaacta aggcttttgg cgctgaacct ttgactatag ctattatcat ggtgatagca
     1321 agaaattgtg cgacatttat ttctcctgtt gtgcctgcaa ctttgctagg ttgtggttta
     1381 gcagaggtta atattaaaga tcatatcaaa agaagctttt tttatatatg gggtataagt
     1441 attatttgct tgatttttgc tgaggtagct gggataatat aattaaaata aaagaacttt
     1501 tgatttttca atgattggtt cattgtttta tgatattttt gagtcaaaaa tttataaaaa
     1561 tataagcgtt tttttgtatt attttatttt gctttagaga aaaattataa atttaaactt
     1621 ataagaatat tttttaagtt gaaagtaaat tttaaaacgg agaaatgatg tacaaaaaac
     1681 aaaatttacc agaacttacc ttaaggggtt tgattttggg aagtatttta actattattt
     1741 ttacagcttc aaatgtatat ttggggttaa aagtgggact tactttttca tcatcaattc
     1801 cagctgtggt catctccatg gcggttttga gtctttttaa gacttcaaat attttagaaa
     1861 ataatatggt tcaaactcaa gcttcagcag caggaacttt atcatcagtt atttttgtta
     1921 tcccagggct ttttatgtgt gggtattgga gtgaatttcc actttggcaa acttttatga
     1981 tatgtctttg tggtggcgga cttggagtgc tttttactat accattaaga aggactatgg
     2041 tggttgaaag caagcttgct tatcctgaag gtagagctgc agctgaaatt ttaaaagtag
     2101 ccaataaaga tcagagtagt aaaaaaggaa aacaaggcat taaagaaata gcattaggct
     2161 cttttatagc tgctattttt agtttgttaa gcaatggttt taaactcgct gcaagtgaga
     2221 gtaattttgc ttttatttgg aataaaatgg cttttggttt ttctatggga tattctttgg
     2281 cacttttagg ggcaggttat ttagttggtt tagcaggtgc tatagctctt tttgtaggta
     2341 tgtttttagc ttggggtatt tttactccct atctttcaaa ttttgaattc gatagtgcaa
     2401 aaaatgccgt agatttagct tctagtgtat ggagttctaa agtaaggctt ataggaacag
     2461 gagctattgc tatagcagcg ctttggactt taatagaact tttaaaaccc gttattgaag
     2521 gtattaaaga aattgttaaa aatgttaaaa ttaccaatca agaaaaaaat gaaagaacaa
     2581 atatagacct ttctttaaaa agtattttta tactttttgt tttaatggtt gtgggtttat
     2641 ttattacttt ttatagtttt gttgaagatg ctaacttaag tatttattat caaatgctat
     2701 tttcatttgt tggaacttta gtttctgttt taataggttt ttttgttgca gcagcttgcg
     2761 gatatatggc aggacttgta ggatcttctt ctagtcctat ttctggaatc ggacttattg
     2821 gtgttattat ttcttctatt gtttttttgg ttttaggtgt ggaacttttt caagatccta
     2881 tgctttctaa atttgcagta gcattagcta tttttactac tagtgttatt ttagctacag
     2941 ctgctatttc gaatgataat ttacaagatt taaagacagg acatttagtc ggagctactc
     3001 cttggaaaca acaagttgct ttacttgtag gctgtgtttt tggtgctttg gctatagttc
     3061 ctgttttaaa tttgctttat caagcctatg gttttgtcgg agcaatgcca agagaaggta
     3121 tggatgcttc atcagcttta gcagcaccgc aagcaaattt aatgagcact atcgcccaag
     3181 gaatttttca tcacaatata gagtggggtt atatggcttt tggtgtattt gtaggaattt
     3241 taatgattat tatagataaa attttaaaag gaacacagaa aatgtctttg ccgcctttag
     3301 ccgttggaat aggtatttac cttccccctg ctataaatat acctttagtt ataggcggaa
     3361 ttttaaaata tattgtaatg caacacttga ctaaaaaata tgcaaaaaat tctcataaag
     3421 aagaaaaact tgcaagttgt gagcaaagag gcacgctttt tgcttcaggg cttatagtgg
     3481 gtgaaagtat ttttggggta attatcgcag gaattactgt attttcagta agtatgggtg
     3541 gtagtgaaaa tcctttagct ttaaatttag caaattttca tgatagcgag cttttcgcac
     3601 ttatcttttt tgtgggagtt gtattatatt tcattaagcg tattgttaaa aaagatgctt
     3661 aatttttggg gttaaaaccc catttaatcc attctgatat aatttttctt ttgcaattat
     3721 cattcaagga ttaaaatgga aaatttatat gctttaatac ttggaattat agaaggtctg
     3781 actgagtttt tacctatttc ttcaacagga catatgattt taggtacaac tattttaggt
     3841 atcgatatag atgagttttg gaaaagcttt ttgattatca tccagcttgg ttctattttg
     3901 gcggtcattt ttgtattttg gcgtaaattg tttcaagggc ttgatatttg gttaaaactt
     3961 gcagttggat tttttcctac tggagttata gggctttttg tggcaaaata cttaaatgct
     4021 ttatttaatg gttgggttgt ggttggaatg ctcatttttg gcggtgttgt gtttattctt
     4081 atagaacttg cacataaaaa taaacaatat cgtatcaatt ctttagaaga aataagtttt
     4141 aaacaagctt tttgcatagg tatttttcaa tctttagcca tgattcctgg tacttcaaga
     4201 agtggagcaa gtattattgg tggacttttg ctaggattta atagaaaagt tgcggctgag
     4261 tttagttttt tgcttgccat tccaacgatg attatcgcta cagcttatag catttataaa
     4321 gagcctgagc ttcttagcaa tgcaaattct ttaattcctt taggcatagg ttttatcact
     4381 gcttttattg ttgcagtttt agttataaaa tttttcttaa aatttatttc taaattcgac
     4441 tttatccctt ttggaattta tcgtattatt ttaggatttg ttttctttta tttgtattat
     4501 agtgggattt taaatgctgg aagtgaattt aagctataaa taaatattaa atttattcta
     4561 agattttttt aaaaataagc tgaatttcaa aaataattaa gtcttagaaa gttaaaatta
     4621 gaactttata aacactcaca gggtaagtga gcgacaaagg gttaaaaata tggaaaaaga
     4681 agttattgcg tatttggaca atgagacaat aattgactct caaagtgtga aaaatacaaa
     4741 tttaaaagaa atttattttg ataattctaa agaaagttta gaagtaatcc gtcattcttg
     4801 tgcgcattta atggcacagg cgattaagag tttgtatcct gaagctaaat ttttcgttgg
     4861 tcctgttata gaagatggat tttattatga ttttcgtgtg gaaagtaaga ttggcgaaga
     4921 agatttagta aaaattgaaa aaaagatgaa agaacttgct gaagcaaaga ttgaaatttc
     4981 aaaatatgaa atcacaaaaa gcgaagcttt ggctaaattt caaaatgatg atttaaaaca
     5041 agaagtttta ttgcgtattc ctgatggagc tgtaagtatt tataaacaag gtgaatttga
     5101 agatttgtgt cgtggtcctc atgcgccaaa tacgaaattt ttacgctttt ttaaactcac
     5161 tcgtgttgca ggagcgtatt tgggtggcga tgaaaaaaga gaaatgctta ctcgaattta
     5221 tggaactgct tttgcagata aggaaagttt aaaagagtat ttaaccatta ttgaagaagc
     5281 taaaaaacgc gatcatagaa agcttggaac agagcttaag ctttttacct ttgatgatga
     5341 gatcggagga ggtcttccta tttggttgag taacggtgca agacttagat ctaaacttga
     5401 acatatgctt tataagatcc atcgtttacg tggttatgag cctgtgcgtg ggcctgaact
     5461 tttaaaagca gatgcatgga aaatcagtgg gcattatgca aactataaag aaaatatgta
     5521 ttttacacaa attgatgaac aagaatatgg cattaagcct atgaactgtg tgggacatat
     5581 taaaatttat caaagtgatg taagaagtta tcgtgatttg cctttgaaat tttttgaata
     5641 cggcgtggta catcgtcatg aaaaaagtgg cgttttgcat ggacttttta gagtgagaga
     5701 attcactcaa gatgatgcac atattttttg tatgccaagt cagattaaag agcaggtttt
     5761 agaaatttta gcttttgtgg ataatttgat gaaattattt gattttagct atgaaatgga
     5821 aatttcaact aaacctgaaa aagccatagg tgatgatgaa atttgggaaa tagcgactaa
     5881 ggctttaaaa gaagctttag atgaacaagg tttaaaatac ggtattgatg aaggtggcgg
     5941 ggctttttat gggccaaaga ttgatattaa aatcaccgat gctttaaaaa gaaagtggca
     6001 atgcggaacc atacaagtag attttaacct accaagtcgt tttaaacttg aatacactga
     6061 tagtgataat gaaaaaaaac aacctgtaat gttgcatcgt gcgattttag gttcttttga
     6121 aagatttata ggaattttaa ccgagcattg tgcgggtgag tttccatttt ttatcgcacc
     6181 aactgcggtg ggtatagtgc caataggcga agcacatatt gcttacgcaa aagaaattca
     6241 aaaagaatta ttagagctta atatcgatag cgaggtgtat gaaaaaaatg agagcttaag
     6301 taaaaaaatt cgtatcgctg aaaagcaaaa attacctatg attttagttt taggcgatga
     6361 tgaggtggca aagcgtagcg ttgctttaag agatagaaga gctaaagaac aaaaaaatct
     6421 tagcttggac gaatttatta aattagttaa ggagaaaatg agtgaggtac acttttgagt
     6481 aaagaaaaag aagtattgct caatgaagaa ataagagcgg atgaaatcag atgtgttggc
     6541 gatgatggca aagtttatgg tattatcagt agtgatgaag ctttagaaat tgcaaatcgt
     6601 ttaggacttg atcttgtaat gatagctgca gatgctaagc cacctgtttg caagatcatg
     6661 gactatggta aattccgtta tcaacaagag aaaaaacaaa aagaagcaaa gaaaaaacaa
     6721 aaagtgattg atataaaaga aatcaaactt tctgtaaaaa ttgctcaaaa tgatattaat
     6781 tacaaggtaa aacatgcttt agaattttta gaacaaggta agcatgtgag atttcgtgtg
     6841 ttcttaaaag gacgtgaaat ggcaactcct gaagcaggtg tagctttgct tgaaaaaatt
     6901 tggactatga tagaaaatga agctaatcgt gacaaagagc caaattttga aggtcgttat
     6961 gtaaatatgc ttgtaactcc aaaaaaagct taatccactt ttgtggataa ggcttttaaa
     7021 ggttttaaat tttgaaagaa aatccttctt ttttaaaaga gcaaattata acttatcttg
     7081 gaaataaaag agcactttta agttttttaa ataatggctt taaggtagct aaaaaagaac
     7141 ttggtaaaga taaatttagt ttttgtgata tatttagtgg ctcaggtgtt gtaagtcgtt
     7201 ttgcaaaagc acactcaaat tatattttag ccaatgattt agaagattat tcaaaactca
     7261 tcaatgagtg ttatcttgct aataaagaca aagatttact tcaaaatata aaaaagtatt
     7321 ataaaaattt aatccaaaat ttagattttc aaaaaggttt tatcagtgag ctttatgctc
     7381 caaaagatga tgatgatatt aaaaaaaatg aaagggtttt ttatactttt aaaaatgctt
     7441 tatatcttga tactataagg caaaaaatcg aaaatgaaat tccaaaagaa ttgaggcatt
     7501 tctttatagc tcctttgatt tatgaagcca gtgttcattc aaatactagc ggagttttta
     7561 aaggttttta taagggtaag gatggtatcg gaaaatttgg aggagaagga caaaatgcac
     7621 ttaaacgcat taaaggagaa atagagctta aaatccctat tttttcaaat ttttcttgtg
     7681 aatttgaagt gatgcaaaag gatgcaaaca tgcttgcaaa agaacttgat ttttttgatg
     7741 tagtgtatct tgacccccct tataatcagc acccttatag ttctaattat tttatgctaa
     7801 atttaattgc aaattataaa aaacctgaag aaatttctaa aatcagtggc attccaaagg
     7861 attggaaccg cagtactttt aataagtcaa aatttgccca agatgcttta tttgaactta
     7921 ttaatgattt aaaagcaaga gtgattttac tttcttataa ttgtgaaggt tttgtaaaaa
     7981 aagaaatttt tttaaagcgt ttaagtactc ttggaaaatg tcggatttta gaacaaaaat
     8041 ataatacttt tagagcttct cgcaatctta aaaatcgtaa tatccatctt catgaacaac
     8101 tttatatttt agttaaaaat taaattttgt gctaaaatta tatttataaa aaggagggat
     8161 ttatgaaact aaaattatct ttttgtacat taatggcatt tggtttttct aactatcttt
     8221 ttgcttcagc tattgatcca aagttatttt caagaatatc ttgattttgc cagtaataaa
     8281 ggcaaatttc aagtaggtta aagtggcttt gaaattttag caaaaaatcc tagtcaaaat
     8341 atctctttta atgtgcctat gattgatttt tctacttcaa atcgtggagg aaaattccaa
     8401 ggagaattta ccaatatagg acaatcttat atagtcagcg cttctcatat gagtacaagt
     8461 ttaaatactg ggaagtaaat aaaggctatg tgaaacaagg tagtgtttta cactttggag
     8521 gggtagcaaa tagaatcgta agctcaagtg ataattttac ttataaaaaa gaaaatgtgg
     8581 attttgctgt tttaaaaatg agtaagatta gtctcaataa aagtgcaaat ttgagtaaag
     8641 atttaaatct tattgaaaaa aattctggcg atggtggaga tatttatgaa tacaaggatc
     8701 cattttggga tagttgtcaa agtggaaaat gtgattattc aaaaggtaaa ggcaagcttt
     8761 ttgatagttc gcgttatgag tactttgtaa gagagggaag tggtattgta gctttaggtt
     8821 ttgaagatac aaataaagta cccattaaga tttttgattc taatgaaatc aatttaggag
     8881 gttttgtcag tttaactcct aaaaatactg aagataagcg ttttaagttg caatttctta
     8941 attataccaa tgataaaaga aattctttta caagttcttc aatatcctgg gattctggaa
     9001 gtggagttta tgtttatgat aagatggata aaaatggtat ctagtgggtg tggtaagtac
     9061 gagtaattgt aatgtccatt ttactatgga tatacttgtt tacaggttga ttatgctttg
     9121 atcaatcaag taaagatcaa tgaattttaa aatgctcata aagtagccat aggatctgga
     9181 acttatacac ttagtagcga tggtttggtg aaagatggta aaaaaataga aaatgtaagt
     9241 ttgatttcta agactaatgt gggttatgta agctataaaa attcttttga tgataaaaat
     9301 aattgtgata agagaattga agaaatgcaa aatagcaagg atttgtattt ttctcaaaat
     9361 ggaagtataa atttaaatag cgatgtggat ttaggcgcta gtgttttaaa tttgataaaa
     9421 attcaaattg gcaaataaca ggcgataaat ggcttataca tggcggaatt tatgctgata
     9481 agggttcaag gtagaatata atgttaaaac caaaaaagat gattttcttt ataaaatggg
     9541 tgaaggagag cttgttgtca aaagtcaaag tgtggataca ggacttagaa tgggtgagga
     9601 ccaaggtaag tcttgagggt gaaggttgaa gttttggcga aatttatatg aatggcagaa
     9661 ctttggattt atcaggctta acattaaatt ttgatcaaat aaaactgact ctaataatgt
     9721 ttttatcaca agttcttaat caggaataca tttaaattta gaaaacaagc aagattatct
     9781 ttatcatggc aatatctttt cagatgaagc tgtaacaatg agtgccaata cagacaaagc
     9841 tttgattttt gatggtaata tttacaataa agaaggtgtt tttaggacag aaaatgccaa
     9901 gttaaatttt caaggacata ctagaataca cgcttatgta agcaaagaac aagctaaaaa
     9961 acttcaagaa catggtttaa gtgctttaac taagcctgta agttttacac aagaagattg
    10021 ggaagatagg gtttttgttt taaaagagct taatttagaa aaaaagcgag ttttatttag
    10081 ggcgtaatgt aagcttaaaa gtagaaaacc ttaatgctaa aaattccaaa atagagcttg
    10141 gaagtaaaaa tttgtggatc gatgaaaaag atggggaaaa tattattgat aagactgatg
    10201 attattctta tggagatgtt gtataaacag gagttggcaa agaaatggct tttgagcaaa
    10261 agctttaaaa tacccaaaat gctaagatag aaaaggttta ttttagtgta aatttaaatc
    10321 ttgatcattc tgatgttact ttgcaaaaca cattttttag tggtaatatc aaaggtatca
    10381 atgatacgca aaaaaaatct tgcgattaaa gattctttgc ttgagtctca tatataaatg
    10441 agtaatcttc aagtagaaaa aagtgctatt tataggaaag ttgatgcaaa aaaattaagt
    10501 gcaaataata caatatttaa aatcaatgcg gattttgaaa attctaaagc agattatatt
    10561 aattctaagg aaagcacaca aggagtaaat aatactttag tattaatttt tcttaataat
    10621 cctagtaaaa agcgggttta aatatcttac tagctcattt aaaagatgaa aataaacatt
    10681 taacaaggga attttttact atgccaaatg tgagcaaggt tttagtacgt atactccaaa
    10741 tgttgttttt tctcataatg aagaaaattt tgcccagagt ggaatttaga aaaaattgat
    10801 tctaagatta aagatgaata tttttttact aatgataata ctcaagctat tgtaaaaact
    10861 aaatctatac ttgctcaagc tattttaggc tccatgatag gagtgggata atatgcataa
    10921 aagaatgggg gaattacaca ataatcctta tgaaagtggt gtatggttaa gaacttttgg
    10981 atggggtacg agtgatgagt ataatagtgg aaaatacttt gaaattcaaa gcggacatga
    11041 taaattaaac gagtattcga atttcgagct ttacagtgga gtaaggtttt tatagtgatt
    11101 ttgttttaga tatatttatt atcaaaatga aataaatgca aattttattc caggaaatca
    11161 aggtagatta gatgataatg atggttcgca taatattatc ttaagtgctg agttaggtta
    11221 tagaaaagct tatgataaat tttatcttga gccgagtttg gaatttatca gtggttatgt
    11281 aggagctatg gatctaaaag gagatattgc tagtttaaaa cgattttctt atattccttt
    11341 agtcgtaaaa acagcatttt tcataggaag tcaaaattaa aatttaaatt ttagaacagg
    11401 acttggtttg tatgcggatc cgattaaagc aggagatcaa atcttggagg atcaagcaaa
    11461 tcagagaaga tatgaaggaa aaaagatcaa agaatgttta taaatttagg aaataattat
    11521 aagcttaacg ataaaacacg ctttagtttt gaatttgaaa agacattttt tggcgattta
    11581 aatgtagatt ggagtgca
//
LOCUS       DBBXPZ010000051        11339 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.053, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000051 DBBXPZ010000000
VERSION     DBBXPZ010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11339)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11339)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11339
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.053"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..617
                     /locus_tag="ACJFD7_001165"
     CDS             <1..617
                     /locus_tag="ACJFD7_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011812753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859977.1"
                     /translation="DMEKSLLFHFRRIGVEFIIFSVYAVFSISWAATGSLMPLISNDL
                     ALNTQQATLITSMIVVAKIFGAYLGLFFKRKNISFKIMLLSGGACIFICGFCMLFLQN
                     LVLIQIFAVLSGIFYSMWFPFFFNLPSELKISNPNQTAYIMSAFWSITFVILSFNLWV
                     VSWSIDKTHSFTLGFVYIFALIFISAILAQFVLPRRENFIQGEK"
     gene            619..1770
                     /locus_tag="ACJFD7_001166"
     CDS             619..1770
                     /locus_tag="ACJFD7_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20 aminoacylase family protein"
                     /protein_id="HGG0859978.1"
                     /translation="MNLIPEILDLQGEFEKIRHQIHENPELGFDELYTAKLVAQKLKE
                     FGYEVYEEIGKTGVVGVLKKGNSDKKIGLRADMDALPLQECTNLPYKSKKENVMHACG
                     HDGHTTSLLLAAKYLASQNFNGTLNLYFQPAEEGLGGAKAMIEDGLFEKFDSDYVFGW
                     HNMPFGSDKKFYLKKGAMMASSDSYSIEVIGRGGHGSAPEKAKDPIYAASLLVVALQS
                     IVSRNVDPQNSAVVSIGAFNAGHAFNIIPDIATIKMSVRALDNETRKLTEEKIYKICK
                     GLAQANDIEIKINKNVVAPVTMNNDEAVDFASEVAKELFGEKNCEFNHRPLMASEDFG
                     FFCEMKKCAYAFLENENDIYLHNSSYVFNDKLLARAASYYAKLALKYLK"
     gene            complement(1774..2514)
                     /locus_tag="ACJFD7_001167"
     CDS             complement(1774..2514)
                     /locus_tag="ACJFD7_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaaA family protein"
                     /protein_id="HGG0859979.1"
                     /translation="MKILFSPSESKNENCTKNPIDENSFIFKELFPYRMEALKHYGEF
                     IKNASLKNLQELFGIKNENEIDKFKHDLKQAPTQEAIMLYTGVSYEYLNFKALDKKSQ
                     AYILENTLIFSNLFGVVRANDTLPFYKFKQGAKIGNFTIEKFYKEHFSKALDEYLENE
                     EILDLRAGFYDKFYTPKKKFYTYKFVKNGKVISHFAKAYRGILLSISAKNQVKNNKEL
                     LANLPSNLKLKEIQIKGLKEEIALEILD"
     gene            complement(2606..3724)
                     /gene="jlpA"
                     /locus_tag="ACJFD7_001168"
     CDS             complement(2606..3724)
                     /gene="jlpA"
                     /locus_tag="ACJFD7_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_254520897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein adhesin JlpA"
                     /protein_id="HGG0859980.1"
                     /translation="MKKGIFLSIGIAVLFSACGNSIDEKTVKKYENQLNQTVKQEIAS
                     LSQDSGIKIEFSDFKCNADGDFIACLSPNFKTLAKDNNDEYQELFQAKNIKIRSNEIY
                     KGEANTSISIKEYYNDLFKNQKSIQSNLVFEDFKLGEKVVSDINASLFQQDPKIRSFI
                     NKLSSDSYTLSFDNSINKQENNYIDNLDIKFYNAKLNFNTNLNINLKEDLLNYLDSKG
                     IKFNTQTLAMDEQAINELLNIANYEQASDFSNTIQKYIILNNFKIDSTLKTEGVFSSY
                     ITTAKENLQTLKTQSQNEEQALIFDKALAILNNITQNDDYKLNLDLKFKNIPVSDYST
                     QGIDSIEKLSINNQDGTEALKIILPFIMFSMLMGGASF"
     gene            3945..4784
                     /locus_tag="ACJFD7_001169"
     CDS             3945..4784
                     /locus_tag="ACJFD7_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine ABC transporter substrate-binding
                     protein"
                     /protein_id="HGG0859981.1"
                     /translation="MKKILLSVLTAFVAVVLAACGGNSDSKTLNSLDKIKQNGVVRIG
                     VFGDKPPFGYVDEKGNNQGYDVALAKRIAKELFGDESKVQFVLVEAANRVEFLKSNKV
                     DIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTAD
                     AYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELG
                     NKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIEG
                     GKI"
     gene            4825..6072
                     /locus_tag="ACJFD7_001170"
     CDS             4825..6072
                     /locus_tag="ACJFD7_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0859982.1"
                     /translation="MQKKYKNIIYASLGGILEFYDFVLFAFFLDIFAKVFFPQNDAFW
                     MQINAYIAFGAAYLARPFGSIVMAHFADRYGRKNIFYISMLLMVLPSFALAFLPSYES
                     IGIFATLILFTIRILQGLAVGTEVSGAWIYVSEFVKGRQIPLALGFISATLTIGLLLG
                     NIATLGIRSYFTPEEVQSYAWRIPFIIGGFFGILALFLRNKLSETPEFIKVQNEKKIL
                     SFPLFEALKTHKMSMLVCFLMTMVLTSGVATLMILPKYFESLLAMSKTSALWVQNFAI
                     LAVIFGALFQGFLASKWGSYRICFIFSIAFIIFGVLFSFYDENFLFYFLLACFAQGII
                     TFAPVFMTQIFKSEFKFSGISFAYNISYAILGFLTPFIVNAFYKEYLGIYLTIAGSCS
                     LLCVFLLKRVFARSKIKELSIVF"
     gene            complement(6055..7323)
                     /locus_tag="ACJFD7_001171"
     CDS             complement(6055..7323)
                     /locus_tag="ACJFD7_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HGG0859983.1"
                     /translation="MQNVIENFKQLCKIPHCSYETEQMKEFLSSYAKDKGFKVSVDKA
                     GNIHAIKGKPKICLQSHYDMVCMGDAPNLEVYEENGFLRAKNSSLGADNSIGIAIIMS
                     AMAEFENLECLFTNDEEVGLMGVNSLEHTLESKMLLNLDHESDDEIMIGCAGGVDIEA
                     SLSFNTLRKKGKIYELCAQNFKGGHSGINIIRNEKSSIKEMAKFIQENEGEIISFEGG
                     ERINSIPKHAKALVHFKDEVKSNNWIKCEFKEENEFEICDQSKKLLSLINSFTHGVRA
                     YDENLGIVQTSINLATLRMQDKQIKFALFARSNILDGLKQVEFETLEFFKAFDFKVRS
                     FNFYPPWEGKPNALSDMIFKALKKVSPNVKVSAIHAGLECGIIEKKQELLCASIGPNI
                     HNPHSTDEHCEIASVEKISKVVFEVLKDNA"
     gene            7391..7918
                     /locus_tag="ACJFD7_001172"
     CDS             7391..7918
                     /locus_tag="ACJFD7_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HGG0859984.1"
                     /translation="MRINYKKLFNLRKLLSDPKKLFSVLIFTLVVVFIQNYIAQNSSF
                     EGKVVRIIDGDTIEVNHENKLARIRFFGIDAPELKQSFGKQSKEALSRILSDKQVEII
                     YKNKDTYGRIVAIVKLNDVDINRFLVSKGYAWADTYYSNAYIKEQENAKKNHLGLWKE
                     GNPIEPYKWRKHNKF"
     gene            7927..8100
                     /locus_tag="ACJFD7_001173"
     CDS             7927..8100
                     /locus_tag="ACJFD7_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859985.1"
                     /translation="MKKYTLMILLALGISGCFVNERGISNRFYDDCKEYYDGSGTYHK
                     DCPKNWVDIKMTP"
     gene            complement(8101..8679)
                     /locus_tag="ACJFD7_001174"
     CDS             complement(8101..8679)
                     /locus_tag="ACJFD7_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0859986.1"
                     /translation="MAKKDNFEEYAQLEEYASAEDISRVRAELLTCPELNTSLAGTII
                     EIDKNYAKSILITTSEMVADDQGLIFDAFIFAAANYVAQASINKEFSVIIGSKCFFYA
                     PLKLGDVLELEAHALFDETSKKRDVKVVGHVKEVKMFEGTIQVVSTDEHIFKLKRPPL
                     NTVKPTENQEQGAKINNPEAVAAALMASVGGK"
     gene            complement(8752..9642)
                     /gene="cmoB"
                     /locus_tag="ACJFD7_001175"
     CDS             complement(8752..9642)
                     /gene="cmoB"
                     /locus_tag="ACJFD7_001175"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HGG0859987.1"
                     /translation="MSRIKMQENLLEKQFLNHPLYAKIQELKALNLACNFSLGDSVNL
                     STNSQAKDEILAITKELKPWRKGPFKIDDLFIDTEWQSFIKFNILKPFMNEISQKCVA
                     DIGCNNGYYMFKMLEFNPAKLIGFDPSIKYRLQFELINALAKTPIKYELLGVEDLPSY
                     GLKFDVIFCLGVIYHRSDPIKMLKDLKAGLNKNGVVFLDTMYIEDEREIALVPNKTYS
                     KIPNIYFVPSISALKNWCERAGFKEFEVLATKKTDENEQRKTEWIDSFSLENFLDPKD
                     KNLTIEGYEAPKRVYIRIKI"
     gene            complement(9738..11339)
                     /locus_tag="ACJFD7_001176"
                     /pseudo
     CDS             complement(9738..11339)
                     /locus_tag="ACJFD7_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790600.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0046930 - pore complex [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006811 - monoatomic ion transport
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
BASE COUNT         3619 a         1586 c         1817 g         4317 t
ORIGIN      
        1 ttgatatgga aaaatcactt ttatttcatt ttagacgcat tggagttgaa tttatcattt
       61 ttagtgttta tgctgttttt agtatctctt gggcagcaac agggtcttta atgcctttga
      121 tttcaaatga tcttgcccta aatactcagc aagctacttt aatcactagc atgatagtag
      181 ttgcgaaaat ttttggtgct tatcttggat tattttttaa aagaaaaaat atctctttta
      241 aaataatgct attgtctgga ggagcgtgta tttttatatg cggattttgt atgttgtttt
      301 tgcaaaattt agtattgata cagatttttg ctgtgttatc aggcattttt tattctatgt
      361 ggtttccatt tttctttaat ctaccttcag aattaaaaat ttccaatcca aatcaaactg
      421 cttatattat gagtgctttt tggagtatta cctttgttat actatcattt aacctatggg
      481 tagtatcttg gagtattgat aaaacccata gttttacttt gggttttgtt tatatttttg
      541 ctttgatttt tatttcagcg atcttagcac aatttgtttt gcctagaaga gaaaatttta
      601 tacaaggaga aaaatagaat gaatttaatt ccagaaatac tagacttaca aggcgaattt
      661 gaaaaaattc gtcatcaaat tcatgaaaat cctgagcttg gttttgatga attatatact
      721 gcaaaattag tggcacaaaa attaaaagaa tttggttatg aggtttatga agaaatagga
      781 aaaacaggcg ttgtgggggt tttaaaaaag gggaatagcg ataaaaaaat aggacttcgt
      841 gcagatatgg atgctttgcc tttgcaagaa tgcacaaatt tgccttataa aagcaaaaaa
      901 gaaaatgtaa tgcatgcttg cggtcatgat ggacatacta cttctttatt gcttgctgca
      961 aagtatttag caagtcagaa ttttaatggc actttaaatc tttattttca acctgctgaa
     1021 gagggtttgg gtggtgctaa ggcaatgata gaagatggat tgtttgaaaa atttgatagt
     1081 gattatgttt ttggatggca caatatgcct tttggtagcg ataagaaatt ttatcttaaa
     1141 aaaggtgcga tgatggcttc ttcggatagt tatagcattg aagttattgg aagaggtggt
     1201 catggaagtg ctccagaaaa ggcaaaagat cctatttatg ctgcttcttt acttgttgtg
     1261 gctttacaaa gcatagtatc tcgcaatgtt gatccccaaa attcagcagt tgtaagcata
     1321 ggagctttta atgcaggaca tgcttttaat atcattccag atattgcaac gattaaaatg
     1381 agtgttagag cattagataa tgaaactaga aagctaactg aagaaaaaat ttataaaatt
     1441 tgtaaaggtc ttgcacaggc taatgatata gagattaaaa tcaataaaaa tgttgttgca
     1501 ccagtgacta tgaataacga tgaagctgtg gattttgcta gtgaggttgc aaaagaatta
     1561 tttggcgaaa aaaattgtga atttaatcat cgtcctttaa tggcaagtga ggattttgga
     1621 tttttttgcg aaatgaaaaa atgtgcctat gcttttttag aaaatgaaaa cgacatttat
     1681 ttacataatt ctagttatgt ttttaatgat aaacttttag ctagggctgc aagttattat
     1741 gcgaagctag ctttaaaata cttaaaataa aaactaatct agaatttcaa gcgcaatttc
     1801 ttcctttaaa cctttgattt gaatttcttt gagttttaga tttgaaggaa ggtttgctaa
     1861 aagctcttta ttgtttttta cttggttttt tgcacttatg gagagtaaaa ttcccctgta
     1921 agctttagca aaatgactga tgactttacc attttttaca aatttatagg tataaaattt
     1981 cttttttggg gtatagaatt tatcataaaa tcctgctcta agatcaagta tttcttcatt
     2041 ttccaagtat tcatctaagg ctttactaaa atgttcttta taaaatttct ctatggtaaa
     2101 atttcctatt ttagcccctt gcttgaattt ataaaagggt agggtatcat tagctcttac
     2161 aacgccaaaa agattagaaa atataagagt attttctaaa atataagctt gacttttttt
     2221 atctaaagct ttaaaattaa gatattcata acttacccca gtgtaaagca ttatagcttc
     2281 ttgagtggga gcttgtttta agtcgtgttt aaatttatca atttcatttt cgtttttaat
     2341 gccaaaaagt tcttgtaaat tttttaaact tgcatttttg ataaattctc cataatgctt
     2401 taaagcttcc attctataag gaaataattc tttaaatata aatgagtttt catcgatggg
     2461 attttttgta caattttcat ttttgctttc actaggggag aataaaattt tcattttagc
     2521 cttttttgtt aatgttatga aaacattaag agcaaagaat ttaatcttgc ttttaatgtt
     2581 tttgaagttt ttatcatttt aaaatttaaa atgacgctcc gcccattaac atagaaaaca
     2641 tgataaatgg aagtataatt tttaacgctt ctgtgccatc ttgattgttg atgctcagtt
     2701 tttctatact gtcgattccc tgtgtgctat agtcactaac agggatgttt ttaaatttta
     2761 aatcaagatt gagtttataa tcatcgtttt gagtgatatt gtttaaaata gctaaagctt
     2821 tatcaaagat taatgcttgt tcttcatttt gactttgagt ttttaaggtt tgtaaatttt
     2881 ccttagcagt tgttatatag ctactaaata cgccttcggt tttaagagtt gaatcaattt
     2941 taaaattgtt taagatgatg tatttttgga ttgtattgct aaaatctgaa gcttgttcgt
     3001 agtttgctat attaagaagt tcattgatag cttgttcatc catagctaaa gtttgagtgt
     3061 taaattttat acccttagaa tcaaggtaat taagcaaatc ttcttttaga tttatattta
     3121 aatttgtatt gaaatttaat tttgcgttat aaaattttat atcaagatta tctatataat
     3181 tgttttcctg tttgttgatg gagttgtcaa atgataaagt ataagaatct gagcttaatt
     3241 tattgataaa agatctgatt tttggatctt gttgaaataa gcttgcattg atgtcactaa
     3301 caactttttc tccaagttta aaatcttcaa aaaccaaatt tgattgtatg cttttttggt
     3361 ttttaaaaag atcgttgtaa tattctttaa tgctaattga tgtatttgct tcgcctttgt
     3421 aaatttcatt tgaacgaatt ttgatatttt ttgcttgaaa tagttcttga tactcatcgt
     3481 tattatcttt tgcaagagtt ttgaaatttg gacttaaaca cgctataaaa tcaccatctg
     3541 cattgcattt aaaatcagaa aattcaatct ttattccaga gtcctgagaa agacttgcaa
     3601 tttcttgttt aactgtttga tttagttgat tttcatattt tttaactgtt ttttcatcta
     3661 tggaatttcc gcaagctgaa aacaaaacag ctattccaat agagagaaaa ataccttttt
     3721 tcatagtttt ctccttaaaa attttaaaaa aagattatat ctttttttac ttaaaattta
     3781 aacaatgcta aaagagagtg tgggattaat tacattttta cacataggaa aatcttttta
     3841 gtttgtttca aatgtattat ttataatttt aagtataatt aactttgcaa ttattatata
     3901 tttttgcaac agctttaagc ttatttttta aagaaaggaa atgtatgaaa aaaatacttc
     3961 taagtgtttt aacggccttt gttgcagtag tattggctgc ttgtggagga aattctgact
     4021 ctaaaacttt aaattctctt gataagatca agcaaaatgg agttgttagg attggggtat
     4081 ttggcgataa accacctttt ggttatgtag atgaaaaagg aaacaatcaa ggctatgatg
     4141 tagctttagc taaacgcata gcaaaagaac tttttggaga tgaaagcaag gtacaatttg
     4201 ttcttgttga agctgcaaat agggttgagt ttttaaaatc aaataaagta gatattattt
     4261 tggctaattt tactcaaact ccgcaaaggg cagagcaggt tgatttttgc tcgccttata
     4321 tgaaggtagc tttaggcgta gctgtaccaa aggatagtaa tataactagc gtagaagatt
     4381 taaaagataa aaccttgctt ttaaacaaag gcacaacagc agatgcttat tttacgcaaa
     4441 attatcctaa tattaaaact ttaaaatatg atcaaaatac cgaaaccttt gccgctttga
     4501 tggataaaag aggcgatgct ttaagtcatg ataatacctt gctttttgct tgggtgaaag
     4561 atcatcctga ttttaaaatg ggtatcaaag agttaggtaa caaagatgtt atcgcaccag
     4621 cggttaaaaa aggcgataaa gaacttaaag aatttatcga taatttaatc attaaactag
     4681 gccaagagca gttttttcac aaggcttatg atgaaacttt aaaagctcat tttggagatg
     4741 atgttaaggc tgatgatgta gtgattgaag gtggaaaaat ttaataaagg gctttttgcc
     4801 ctttatattg atttaggata aaatatgcaa aaaaaataca aaaatattat ttatgcttct
     4861 ttgggtggaa ttttagaatt ttatgatttt gtgctttttg cctttttttt ggatattttt
     4921 gctaaggtat tctttccgca aaatgatgct ttttggatgc agataaatgc ttatatagcc
     4981 tttggtgctg cttatttagc gcgtcctttt ggttctattg tgatggcaca ttttgctgat
     5041 agatatggaa gaaagaatat tttttatatt tctatgcttt tgatggtttt gcctagtttt
     5101 gctttagctt ttttgccaag ttatgaaagt ataggtatat ttgctacttt gattttattt
     5161 actatacgca ttttgcaagg tttagccgtt ggaactgagg tgagcggagc ttggatttat
     5221 gtgagcgaat ttgtcaaagg gcgtcaaatt cctttagctc ttggttttat ttcagcgact
     5281 ttaaccatag gtttattgct aggaaatatt gccactttag gcataagatc ttattttacc
     5341 ccagaagaag ttcaaagcta tgcttggaga attcctttta tcataggagg attttttgga
     5401 attttagctt tgtttttaag aaataaactc agcgaaactc cagaatttat aaaagttcaa
     5461 aatgaaaaga aaattttaag ttttccattg ttcgaagctt taaaaactca taaaatgagt
     5521 atgcttgttt gttttttaat gaccatggtt ttaacaagcg gtgtggcaac tttgatgatt
     5581 ttacctaagt attttgaaag tcttttagct atgagtaaaa cttctgcttt atgggtgcaa
     5641 aattttgcta ttttagcggt gatttttgga gctttatttc aaggtttttt agcaagcaaa
     5701 tggggaagct ataggatttg ttttattttt agtatagctt ttattatttt tggtgtgctt
     5761 tttagttttt atgatgagaa ttttttattt tattttttac tggcttgttt tgcacaaggt
     5821 attattactt ttgcgcctgt ttttatgacg caaattttta aaagcgaatt taaatttagt
     5881 gggattagct ttgcttataa tatttcttat gcgattttag gttttttaac cccttttata
     5941 gttaatgctt tttataaaga gtatttaggt atttatctta ctatagcggg atcttgctcc
     6001 ttgctttgcg tgtttttgtt aaaacgcgtt tttgcaagaa gtaagattaa agaattaagc
     6061 attgtctttt aaaacctcaa aaacaacctt agatattttt tcaactgaag cgatttcaca
     6121 atgctcatca gttgaatgag gattatggat atttgggcct atagaagcgc ataaaagctc
     6181 ttgttttttc tctataatgc cacactcaag ccctgcatgg atagctgaaa ctttgacatt
     6241 aggcgatact tttttaagtg ctttaaaaat catgtcgcta agtgcgtttg gtttaccttc
     6301 ccaaggtgga tagaaattaa aacttcttac tttaaaatca aaagccttga aaaattctaa
     6361 agtttcaaat tctacttgct taagtccatc aagtatatta gatcttgcaa aaagtgcgaa
     6421 tttgatttgt ttatcttgca ttcttaaagt agctaggtta atacttgttt gaactatacc
     6481 tagattttca tcataagctc taactccatg agtaaaagaa tttataaggc ttaaaagttt
     6541 tttactttga tcgcaaattt caaattcatt ttcttcttta aattcacatt ttatccagtt
     6601 attactcttt acttcatctt taaaatgcac taaagctttg gcgtgtttag gtatagaatt
     6661 gattctttct ccgccttcaa aagaaatgat ttctccttca ttttcttgta tgaatttagc
     6721 catttctttg atggaacttt tttcattgcg tatgatattt atgcctgagt gtccaccttt
     6781 aaaattttgc gcacaaagct cataaatttt accctttttt ctaagggtat taaaagataa
     6841 acttgcttct atatctactc cacctgcaca gcctatcatg atctcatcat cgctttcatg
     6901 atctaaattt aaaagcattt tagattctaa agtgtgctcg agtgaattca ctcccatgag
     6961 tcctacttct tcatcgtttg taaaaagaca ttctaaattt tcaaattcag ccatagcact
     7021 cattatgatg gctataccta tgctattatc tgcaccaaga cttgaatttt tggctcttaa
     7081 aaagccattt tcttcataaa cttctaagtt tggtgcatcg cccatacaga ccatatcata
     7141 atggctttgt agacaaattt ttggtttgcc ttttatggca tggatatttc ctgccttatc
     7201 tacactcacc ttaaagcctt tatctttggc gtaagagctt aaaaattctt tcatttgttc
     7261 tgtttcataa ctgcaatgag gaattttgca taattgttta aaattttcta taacattttg
     7321 cattttatct cctttgtttt gataaaatta tggcatattt tttaaaattt aaaggcaaaa
     7381 tgattaaaaa atgagaataa attataaaaa attatttaat ctaagaaaat tattaagtga
     7441 tccaaaaaaa cttttttctg tattaatctt cactcttgta gttgttttta tccagaacta
     7501 tattgcccaa aattctagtt ttgaaggaaa agtagttaga attattgatg gagatactat
     7561 agaagttaat catgaaaaca aactcgctag aataagattt tttggtatag atgcaccaga
     7621 acttaaacaa agttttggaa agcaatcaaa agaagcttta agtagaattt taagcgacaa
     7681 acaagttgaa attatttata aaaataaaga tacttatggt agaattgttg ctattgtaaa
     7741 gcttaatgac gttgatatta atcgattttt agtaagcaaa ggctatgctt gggctgatac
     7801 ttactatagt aacgcttata tcaaagaaca agaaaatgct aagaaaaatc atttaggtct
     7861 ttggaaagag ggtaatccta tagagcctta taaatggaga aaacacaata aattctaagg
     7921 aaaaacatga aaaaatatac tttaatgata ctattagctt taggaatttc tggatgtttt
     7981 gtaaatgaaa gagggatttc aaatcgtttt tatgatgatt gtaaagagta ttatgatgga
     8041 agcggaactt atcataagga ttgcccaaaa aattgggtag atattaaaat gactccttga
     8101 ttattttcca cccacagagg ccattaatgc agctgctacg gcttctggat tgttgatttt
     8161 ggcaccttgt tcttgatttt ctgtaggttt aacagtgtta agtggcggac gcttgagttt
     8221 aaatatatgt tcatcggtgc taacaacttg tatcgttcct tcaaacattt taacttcttt
     8281 aacatgtcca accactttta catctctttt tttggaggtt tcgtcaaaaa gtgcatgagc
     8341 ttcaagttct aaaacatcgc ctaatttaag cggagcataa aaaaaacatt ttgatccaat
     8401 aatcactgaa aattctttat tgatagaggc ttgtgctaca tagtttgctg cagcgaaaat
     8461 aaaggcatca aaaatcaatc cttgatcatc tgctaccatt tcgcttgtgg ttattaaaat
     8521 tgatttggca tagtttttat caatttcgat aatggttcca gcaagtgagg tgtttaattc
     8581 aggacaagtg agtaattctg ctctaacgcg agatatatct tctgcagatg cgtattcttc
     8641 aagttgtgca tattcttcaa aattatcttt ttttgccata tctaaccttt aaattctact
     8701 tatctacttc aaaatatcta aaattcaata tcggcaaaaa ataaaaagaa tttatatttt
     8761 aatgcgtata taaactcttt tgggtgcttc atagccttca atggtaagat ttttatcctt
     8821 tggatctaag aaattttcca gcgaaaaaga gtctatccat tctgtttttc tttgttcgtt
     8881 ttcatcggtt ttttttgtag ccaaaacttc aaattcttta aatcctgctc tttcacacca
     8941 gttttttaat gcactaatgc ttggtacaaa ataaatattt ggaattttag aataagtttt
     9001 attaggcaca agagcgattt ctctctcatc ttctatatac atggtatcta aaaaaacaac
     9061 tccattttta ttaagtcctg cttttaaatc ttttagcatt tttataggat cacttctatg
     9121 ataaatcacc ccaagacaga aaatcacatc aaatttcaag ccatagcttg gaagatcttc
     9181 tacgcctaaa agttcgtatt ttataggagt tttagctaaa gcgttaatga gttcaaattg
     9241 caaacggtat ttgatagaag gatcaaaacc tatgagtttt gcaggattaa attcaagcat
     9301 tttaaacata taataaccat tattacagcc tatatcagca acgcattttt gagaaatttc
     9361 gttcatgaaa ggctttagaa tgttgaattt aataaaactt tgccattctg tatcgatgaa
     9421 aagatcgtct attttaaaag gaccttttct ccatggttta agttcttttg ttatagctaa
     9481 gatttcatct ttggcttgag aatttgtaga taaattcacg ctatcgccta aagaaaaatt
     9541 acaagcaaga ttgagagctt taagttcttg aattttagcg tataaagggt gatttagaaa
     9601 ttgtttttca agtaaatttt cttgcatttt tatccttgac atttgctttt aatgctaaat
     9661 tataacatta aaagctttta tggcaatata aatctcatat gcattaagta tttgatcaaa
     9721 aataaatttt taaaaactca aaaatacttc ccaaagctta cataagcttt agaactataa
     9781 tcatcatcta gtttatattt ctttaaagct ctagctaaat caagcttgac ataaaaattc
     9841 cctgttttat tataaagcag ttgtaaacca taagcatcca tatagtttgt ttcacttgct
     9901 ctatatagtt tagaatcatt ctcataccaa gaataaccta tatcataaaa aggagtgata
     9961 taaaaatctt ttaaaggagt agccattcta agtccaaagc tagccactac agcattatct
    10021 ccttctccat ctccattatt ataagccctt actccataag gatctcctaa agatatagtt
    10081 tcactactat ctaatgtagc tccattgaca acttgttgat aatttaaact aaaaagatga
    10141 gtaaaagtat cattaaagaa ataagcattg ttaagattga cattgagttt agcaaatttt
    10201 ccaaagccat ctccatctgt tttagaactc attcctaata tagtagttcc cccatcttta
    10261 acattatcat agcttacatt agcactataa gaaaaactat cattactaat gccattataa
    10321 actccttcta taccaaagct tatcgtatca gagcttttat ctatagtcat ggatatttaa
    10381 tcttgaatta ctaagctttt tatgataata acttgaagtt aaataaaaag aattataagt
    10441 cgtaatccac aaaggatatt ttaaatctat acctagattt tcagaagttc ctataaagtt
    10501 tgcattttta taagctcctc ctaaagcata gtttctttta gaataacttg gagtgatttt
    10561 taaattccct aagaaagtag tatagcttat accatagtta gtttgtgctt catcgcttct
    10621 ttgcaaataa gcattaagac tatctctttg atgagctatg ttattaaaac tcatactagc
    10681 accaccccta ttatctgtct gattctttta taccgtaatt atccccataa aacaatacag
    10741 aaacaaagct atcactaggg gtagtttcta tcactatatc tgtgtcacct agattatctc
    10801 ctgcttttaa agaagcaagg gtttgtatgc catacatttc attgacttta taaaccgcat
    10861 cttctactaa tttagtagtg atgatttcac ctttatgatt aggtaatttg ctttctatag
    10921 cataatctct tacactagaa ttgttttgaa ccacatattt acctaaaaca cctaaggtga
    10981 tattgatttg aatttgatct tttagttctt gttgtgggat ataagctgta gcagcaggat
    11041 aaccactaac ttgaacataa taagaaataa tattggctat atcttgtaag tcttgaactg
    11101 aaatactttc ttttttgtaa tcgtttaagg cttcttgtaa aacttgctca tctaaaccta
    11161 gatctttaaa gtttatgttt ttattggtaa tatgaaagtt aaagctaact ttatgaattg
    11221 attcttcttt agaagtattt tttaaagaag gagtgtttga atttggggtt ttagttttta
    11281 aagtattatc attagacaag ttaggttgat ttttttgagt gttgttatta tctttttga
//
LOCUS       DBBXPZ010000052        11262 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.054, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000052 DBBXPZ010000000
VERSION     DBBXPZ010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11262)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11262)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11262
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.054"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            146..457
                     /gene="rpsJ"
                     /locus_tag="ACJFD7_001177"
     CDS             146..457
                     /gene="rpsJ"
                     /locus_tag="ACJFD7_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HGG0859988.1"
                     /translation="MERIRLKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKI
                     KRYTVLKSPHINKDSREQFEIRIHARMLDIVAATPDTVDSLTKLDLAPEVSVEVRAMG
                     K"
     gene            467..1042
                     /gene="rplC"
                     /locus_tag="ACJFD7_001178"
     CDS             467..1042
                     /gene="rplC"
                     /locus_tag="ACJFD7_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HGG0859989.1"
                     /translation="MEYIVEKIGMSRTITNPSIAVTLLRVVNAKVCEVEGGKALVAYP
                     KGKASNKCVAGQQKKYNLSAEYNRFATLEVANTEAGDLDETPLNEAKILKVSFNTKGR
                     GYSGVMKRHNFAGGPASHGSRFHRRHGSIGNREWPGRVQPGMKMAGHYGNTKVTVKNE
                     VVSYDAENKILVVKGAVPGYNGAMGKIRIAK"
     gene            1039..1653
                     /gene="rplD"
                     /locus_tag="ACJFD7_001179"
     CDS             1039..1653
                     /gene="rplD"
                     /locus_tag="ACJFD7_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HGG0859990.1"
                     /translation="MSKVVVLNDKLEKAGELDLPSKYAEVNPHNLYLYVKSYLASLRA
                     NTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK
                     KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDLLDEK
                     TLLAYRNLANCYVVDISEVNAYLVSVFNAVIMEKSALESITKEG"
     gene            1656..1937
                     /locus_tag="ACJFD7_001180"
     CDS             1656..1937
                     /locus_tag="ACJFD7_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HGG0859991.1"
                     /translation="MADITDIKTILYTEKSLNLQEQGVVVIQTSPKMTKTGLKAVLKE
                     YFGVTPKSINSLRMDGKVKRFRGRLGQRNDYKKFYVKLPEGVSLENTEA"
     gene            1939..2769
                     /gene="rplB"
                     /locus_tag="ACJFD7_001181"
     CDS             1939..2769
                     /gene="rplB"
                     /locus_tag="ACJFD7_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HGG0859992.1"
                     /translation="MAIKTYKPYTPSRRYITGLSSEDITAKPSVRSLLVKLPAHAGRN
                     SYGRITSRHKEAGAKKLYRIIDFKRRKFGIEGKVEAIEYDPYRNCRIALIAYKDGEKR
                     YILQPRGLSVGDIVAAAESGLDIKPGNAMKLKNIPVGTIVHNVELKPGKGGQMIRSAG
                     AYAQLMGKEEKYVILRLASGEMRQVLAECMASIGEVGNEEWANVTIGKAGRNRHRGIR
                     PQTRGSAMNPVDHPHGGGEGKKNSGRHPVTPWGKPTKGAKTRRKKASDKLIISRRKGK
                     "
     gene            2771..3052
                     /gene="rpsS"
                     /locus_tag="ACJFD7_001182"
     CDS             2771..3052
                     /gene="rpsS"
                     /locus_tag="ACJFD7_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HGG0859993.1"
                     /translation="MARSLKKGPFVDDHVMKKVIAAKKANDNKPIKTWSRRSTITPDM
                     IGLTFNVHNGKSFIPVYITENHIGYKLGEFAPTRTFKGHKGSVQKKIGK"
     gene            3063..3506
                     /gene="rplV"
                     /locus_tag="ACJFD7_001183"
     CDS             3063..3506
                     /gene="rplV"
                     /locus_tag="ACJFD7_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HGG0859994.1"
                     /translation="MSKALIKFIRLSPTKARLIAREVQGMNAELAMASLKFMPNKGAK
                     YIANAISSAVANGGFEANEVIVKSCRVDAAAVLKRFRPRARGSASRIRKPTSHILVEV
                     AKAEVKAEEKKTVAKKAPAAKKTTTTKAPAKKTASTKKATVKKES"
     gene            3506..4207
                     /gene="rpsC"
                     /locus_tag="ACJFD7_001184"
     CDS             3506..4207
                     /gene="rpsC"
                     /locus_tag="ACJFD7_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HGG0859995.1"
                     /translation="MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLK
                     RKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNIN
                     IKEERKAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGA
                     EMARTEWYLEGRVPLHTLRAKIDYGFAEARTTYGNIGVKVWIFKGEVLHKGMQPEKTE
                     ESAPAKKPRRTRRGK"
     gene            4210..4635
                     /gene="rplP"
                     /locus_tag="ACJFD7_001185"
     CDS             4210..4635
                     /gene="rplP"
                     /locus_tag="ACJFD7_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HGG0859996.1"
                     /translation="MLMPKRTKYRKMMKGRNRGYANRGTEFTFGEFALKATEAGRINS
                     RQIEAARIALTRFVKRQGKTWIRVFPDKPLTKKPLETRMGKGKGAVEEWVMNIKPGRI
                     IYEMAGVSEEMAREALTLAMHKLPFKTKFVTRESQNEIY"
     gene            4622..4807
                     /gene="rpmC"
                     /locus_tag="ACJFD7_001186"
     CDS             4622..4807
                     /gene="rpmC"
                     /locus_tag="ACJFD7_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HGG0859997.1"
                     /translation="MKYTEIKDKTAAELATMLKEKKVLLFTLKQKLKTMQLTNPKEIS
                     QVKKDIARINTAINALR"
     gene            4817..5068
                     /gene="rpsQ"
                     /locus_tag="ACJFD7_001187"
     CDS             4817..5068
                     /gene="rpsQ"
                     /locus_tag="ACJFD7_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HGG0859998.1"
                     /translation="MAFKREIQGVVVKIAGEKTASVLVERKVVHPRYRKIVKRFKKYL
                     IHDERNEVKVGDTVVAVECRPLSKRKSFRLKSVLATGVE"
     gene            5068..5436
                     /gene="rplN"
                     /locus_tag="ACJFD7_001188"
     CDS             5068..5436
                     /gene="rplN"
                     /locus_tag="ACJFD7_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011567679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HGG0859999.1"
                     /translation="MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVK
                     KALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPV
                     GREVRYGGFMKIVSLAPEVL"
     gene            5436..5669
                     /gene="rplX"
                     /locus_tag="ACJFD7_001189"
     CDS             5436..5669
                     /gene="rplX"
                     /locus_tag="ACJFD7_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HGG0860000.1"
                     /translation="MAVKLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKI
                     AKKAIKPSEKNPNGGFINKEMPMDISNVAKVQE"
     gene            5673..6218
                     /gene="rplE"
                     /locus_tag="ACJFD7_001190"
     CDS             5673..6218
                     /gene="rplE"
                     /locus_tag="ACJFD7_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HGG0860001.1"
                     /translation="MMRLKEKYNQSIKPALVKEFDIKNPMLIPVIEKVVISVGAGELA
                     KDQKVLQNVADTISLIAGQKAVITKAKKSVAGFKVREGFPVGVMVTLRKENMYAFLDK
                     LISIALPRVKDFRGLSRDGFDGRGNYNFGLDEQLMFPEVEYDKILRTHGMNISIVTTA
                     QNDKQAQKLLELIGVPFTKGK"
     gene            6220..6405
                     /locus_tag="ACJFD7_001191"
     CDS             6220..6405
                     /locus_tag="ACJFD7_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003948630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HGG0860002.1"
                     /translation="MAKKSMIAKAARKPKFKVRAYTRCQICGRPHSVYRDFGICRVCL
                     RKMGNEGLIPGLKKASW"
     gene            6415..6810
                     /gene="rpsH"
                     /locus_tag="ACJFD7_001192"
     CDS             6415..6810
                     /gene="rpsH"
                     /locus_tag="ACJFD7_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HGG0860003.1"
                     /translation="MINDIISDSLTRIRNAGMRKLETTKLLHSKVVEALVGIFQAKGY
                     IESFNVIEEDKKKFINVVLKYDEKGKSVINELKRISKPGRRVYKGKDEIKRFKNGYGT
                     IVVSTSHGVLANDEAYKAGVGGEILCTIW"
     gene            6889..7425
                     /gene="rplF"
                     /locus_tag="ACJFD7_001193"
     CDS             6889..7425
                     /gene="rplF"
                     /locus_tag="ACJFD7_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HGG0860004.1"
                     /translation="MSRIGKQPIAIPAGVEVKLEGNLLKFKKGNLAKELDTKANVNVE
                     IKDNNILFSPKGEDRQSRAYWGTYRALAYNIVVGLTQGFSKTLEINGVGYKAALKGKV
                     LELSLGFSHPINYDIPEGIEIVVDKNTIAVKGSDKQVVGQVAAQIREFRPPEPYKGKG
                     VKYSDERIIRKAGKTSKK"
     gene            7435..7791
                     /gene="rplR"
                     /locus_tag="ACJFD7_001194"
     CDS             7435..7791
                     /gene="rplR"
                     /locus_tag="ACJFD7_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HGG0860005.1"
                     /translation="MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYI
                     QAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFAKTLKVKKIEQAVFDRNGYVYHG
                     VIAALAESLRENGIRL"
     gene            7803..8246
                     /gene="rpsE"
                     /locus_tag="ACJFD7_001195"
     CDS             7803..8246
                     /gene="rpsE"
                     /locus_tag="ACJFD7_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HGG0860006.1"
                     /translation="MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLV
                     GVGYGKAKEVPDAIRKAVDDAFKNIVEVKTKGSTIAHDVEVKYNASRILLKPASEGTG
                     VIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLKG"
     gene            8251..8643
                     /gene="rplO"
                     /locus_tag="ACJFD7_001196"
     CDS             8251..8643
                     /gene="rplO"
                     /locus_tag="ACJFD7_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HGG0860007.1"
                     /translation="MNLTKAAGSTHKTKRIGRGQGSGMGKTATKGGKGQTARKGYNEK
                     RGFEGGQQPLQRRLPKVGFTSKIQKPYVINVEKITAVKELSEITFESIKSVHKISKSV
                     NKIKLIGASAKDLVSKIKDENISVTGSK"
     gene            8643..9908
                     /gene="secY"
                     /locus_tag="ACJFD7_001197"
     CDS             8643..9908
                     /gene="secY"
                     /locus_tag="ACJFD7_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HGG0860008.1"
                     /translation="MNRALTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQN
                     NALGLFNVFSGGAAERFSIISLGIMPYITASIIMELLAATFPNIGKMKKERDSMQKYM
                     QIIRYATIVITLVQSIGVAIGLQSLHGRGGAGAIMVEDLNMFIALCAISMLAGTMLLM
                     WLGEQITQRGIGNGISLIIFAGIVSGIPRAISGTVGQINSGEMNFLTAFAIFALILIT
                     IGVIIYIELGERRIPISYSRKVVMQNQNKRIMNYIPIKLNLSGVIPPIFASAILMFPT
                     TILQTSTNPYLQAINDFLNPNGYLFHVLTFLFVIFFAYFYASIVFNAKDIAENLKKQG
                     GFIPGIRPGEGTSSYLNEVASRLTLSGSIYLGLVATLPWVLVKFMGVPFHFGGTSVLI
                     VVQVALDTMRKIEAQIYMSKYQTLSAVGL"
     gene            complement(9936..11206)
                     /locus_tag="ACJFD7_001198"
                     /pseudo
     CDS             complement(9936..11206)
                     /locus_tag="ACJFD7_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345053.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
BASE COUNT         4207 a         1566 c         2277 g         3212 t
ORIGIN      
        1 ctatttttat cctttttaaa aggaaaataa tagaaaaatt tcatcaaatt ccttgacttt
       61 gaaaacaaga ttttatatac tctcatttca atttttataa aattggttag tttttaacta
      121 acgagttctt tttaaaggaa atattatgga aagaattagg cttaagctaa aagcttatga
      181 ccatcgagta ctagacagaa cagttgcagc aatcgtagaa gctgttaaaa gaacaggtgc
      241 ggatattaga ggtccgatac caatgcctac taaaatcaaa cgctatacag ttttaaaatc
      301 tccacacatt aacaaagatt ctcgtgagca gtttgaaata agaattcacg cgcgtatgct
      361 agatatagta gcagcgactc cagatacagt tgattcttta acgaagcttg atttagcgcc
      421 agaagtaagc gttgaagtaa gagctatggg taagtaagga taagatatgg aatatattgt
      481 agaaaaaatt ggaatgagca gaacaattac taatccaagt atcgctgtaa ctttactaag
      541 agttgtaaat gcaaaagtat gtgaagttga aggcggaaag gctttagtag catatccaaa
      601 aggtaaagca agtaataaat gtgtcgcagg acaacaaaaa aaatacaatc tttctgcaga
      661 atacaataga tttgcgactt tagaagtagc aaatactgaa gcaggagatt tagatgaaac
      721 tccattaaat gaagcaaaaa ttttaaaagt aagctttaac actaaaggta gaggttatag
      781 cggtgttatg aagagacata acttcgcagg gggtccagca agtcacggtt ctagatttca
      841 cagacgccat ggatctattg gtaatagaga atggccaggt cgtgttcaac caggtatgaa
      901 aatggcagga cactatggaa atactaaagt gaccgttaaa aacgaagttg tatcttatga
      961 tgctgaaaat aaaattttag tagttaaagg tgcagtacca ggttataatg gtgctatggg
     1021 taaaataagg attgcaaaat gagtaaagta gttgttttaa atgataaatt agaaaaagca
     1081 ggtgaacttg atttaccttc aaaatatgcg gaagtaaatc cacacaatct ttacttgtat
     1141 gtaaaatctt accttgcaag tttaagagca aatacagctc atactaaagg tagaagtgat
     1201 gtaagtggtg gtggtaaaaa accttggaga caaaaaggtc gtggcggtgc tagagcgggt
     1261 tcaacaagaa ctaacgtttg ggtaggcggt gcggttgctt ttggtccaac aaatgaaaga
     1321 aactacttcc aaaaagtaaa taaaaaacaa aaaagattgg cgcttgaaag agctttagca
     1381 gataaagcag ctaaaggtgt gttatttact gctgattctt tggctattga aagtggtaaa
     1441 acaaaagatg caaacgctgt gattaaaaaa cttggcgtca aagatgcttt aatcgttaaa
     1501 gatttactag atgaaaaaac acttttagct tacagaaatt tagcaaattg ctatgtggtt
     1561 gatataagcg aagtaaatgc ttatttagta tctgtattta atgctgttat tatggaaaaa
     1621 tcagcgttag aatctattac aaaagaggga taattatggc agatattact gatataaaga
     1681 ctatacttta cacagaaaaa agtttgaatt tgcaagagca aggtgtcgta gttattcaaa
     1741 cttcaccaaa aatgactaaa acaggcttaa aagcggtttt aaaagagtat tttggtgtaa
     1801 ctccaaaaag catcaattct ttaagaatgg atggaaaagt taagcgtttt agaggtcgtt
     1861 taggtcaaag aaacgattac aaaaaattct atgttaagct acctgaaggt gttagcttag
     1921 aaaatacgga ggcttaagat ggcaattaaa acttataaac catatactcc aagtagaaga
     1981 tatatcacag gtttaagttc tgaagatatt acagctaaac caagtgtacg ctcactactt
     2041 gttaaacttc cagcacacgc aggtcgtaac agttatggaa gaattacaag tcgtcataaa
     2101 gaagcaggtg ctaaaaaact ttacagaatt attgatttta aacgtcgtaa attcggcata
     2161 gaaggtaaag tagaagcaat cgagtatgat ccatatagaa attgtagaat tgctttgatt
     2221 gcttataaag atggggaaaa aagatatatt cttcaaccac gtggattaag cgttggtgat
     2281 atcgttgcag ctgctgaaag cggacttgat attaaaccag gtaatgcaat gaaacttaaa
     2341 aacattcctg tgggtactat tgttcataat gttgagttaa aaccaggtaa aggcggtcaa
     2401 atgattcgtt ctgcgggtgc ttatgcacaa cttatgggta aagaagaaaa atatgttatt
     2461 ttaagacttg caagtggcga aatgagacaa gttttagctg aatgtatggc aagtatcggc
     2521 gaagttggaa atgaagaatg ggctaatgta actatcggta aagcaggtag aaatcgccat
     2581 agaggtatcc gcccgcaaac tcgtggttct gcaatgaacc cagtagatca cccgcacggt
     2641 gggggtgaag gtaagaaaaa ttcaggccgt catccagtaa ctccgtgggg taaaccaacc
     2701 aaaggtgcga aaactcgtcg taaaaaggct agcgataagc taataatttc aagaagaaaa
     2761 ggaaagtaag atggctagat cactaaaaaa aggtcctttt gttgatgatc atgtaatgaa
     2821 aaaagtcatc gctgctaaaa aggctaatga taataaacca attaaaactt ggtcaagaag
     2881 aagcacaatt actcctgata tgataggact tacatttaat gttcataatg gcaaaagctt
     2941 cattccggtt tatattactg aaaatcacat cggttataaa cttggtgaat ttgctccaac
     3001 acgcacattt aaagggcata aaggctctgt gcaaaagaaa attggtaagt aagggataag
     3061 atatgagtaa agcattaatt aaattcataa gattatctcc aactaaagca agattgattg
     3121 ctagagaagt tcaggggatg aatgcagaat tagctatggc tagtttaaaa tttatgccaa
     3181 ataaaggtgc aaaatatatc gcaaatgcaa tttcaagcgc agtagcaaat ggtggctttg
     3241 aagcaaacga agtgattgta aaaagttgtc gtgttgacgc agctgcggta ttaaaaagat
     3301 ttagaccaag agctagagga agtgcaagtc gtattagaaa accaacttca catattttag
     3361 tagaagtggc aaaagcagaa gtgaaagctg aagagaaaaa aacagtagct aaaaaagctc
     3421 cagcagctaa aaaaactact acaacaaaag ctccagctaa aaaaacagca agcactaaaa
     3481 aagcaacagt gaaaaaggaa agctaatggg acaaaaagtt aatccaattg gtctaagact
     3541 aggaatcaat agaaattggg aatcaagatg gtttccgact aaagcaaatt tagtagaaaa
     3601 tatcggtgaa gattacaaaa tcagagcttt cttaaaaaga aaactttatt acgcaggaat
     3661 tagccaaatt ttagtagaaa gaactgctaa aaaacttcgc gttactgtag ttgctgcaag
     3721 accaggtatc atcatcggta aaaaaggtag tgatgttgat aatttaagaa aagaattgca
     3781 agatttaatc ggtaaagatg taaatatcaa tatcaaagaa gaaagaaaag caggagcttc
     3841 agctcaactt gctgctgaaa gtgttgcaac tcaacttgaa aaaagaattg cttttagaag
     3901 agcaatgaaa aaagtaatcc aaggtgcgca aaaagcaggt gctaaaggaa ttaaagtttc
     3961 agtttccggt cgtttaggcg gtgctgaaat ggcaagaaca gaatggtatc ttgaaggacg
     4021 cgttccactt catactttaa gagcaaaaat cgattatggt tttgcagaag ctagaactac
     4081 ttatggaaac ataggagtta aagtatggat ctttaaaggt gaagtattgc acaaaggtat
     4141 gcaacctgaa aaaactgaag aaagtgctcc agctaaaaag ccaagacgca caagaagggg
     4201 taaataatca tgttaatgcc aaaaagaact aaatatcgca aaatgatgaa agggcgtaac
     4261 agaggttatg ctaatcgtgg aacagaattt acttttggtg aatttgcatt aaaagcaact
     4321 gaagcaggac gcattaactc acgccaaatc gaagcagcgc gtatcgcttt aactcgtttt
     4381 gttaaaagac aaggaaaaac ttggattaga gtttttccag ataagccttt gacaaaaaaa
     4441 cctttagaaa ctcgtatggg taaaggtaaa ggtgctgttg aggaatgggt aatgaatatc
     4501 aagccaggtc gtatcattta tgaaatggca ggagtaagcg aagaaatggc aagagaagca
     4561 ttgactttag ctatgcataa acttccattt aaaactaagt ttgttacaag agagagccaa
     4621 aatgaaatat actgagatta aagataaaac agcagctgag cttgcaacaa tgctaaaaga
     4681 aaaaaaggtg cttttattca ctttaaaaca aaagctaaaa acaatgcaac ttactaatcc
     4741 aaaagagatt agccaagtaa aaaaagacat tgctagaata aatacagcaa ttaacgcttt
     4801 aagataagga tagaaaatgg catttaaaag agaaattcaa ggcgttgttg ttaaaatcgc
     4861 tggtgaaaaa accgcaagtg ttttggttga aagaaaagtg gttcatccaa gatatagaaa
     4921 aattgttaaa cgctttaaaa aatatctaat tcatgatgag agaaatgaag ttaaagtggg
     4981 tgatactgtt gttgcagtag aatgcagacc actttcaaaa agaaaatcat ttcgcttaaa
     5041 atctgtatta gctacaggag ttgagtaatg attcaaagtt ttacaagact tgcagttgct
     5101 gataatagcg gtgcaaaaga attaatgtgt atcaaggttt tagggggtag caaaagaaga
     5161 tacgctaccg taggtgatgt aatcgttgca tctgttaaaa aagctttacc aaatggaaaa
     5221 gttaaaaaag gtcaagtggt aaaagcggtt atcgttagaa ctaaaaaaga aattcataga
     5281 gataatggtt ctttgattcg ttttgatgaa aatgctgcgg ttattcttga caacaaaaga
     5341 gagcctatcg gaactcgtat ctttgggcca gtgggcagag aagttagata tggtggcttt
     5401 atgaaaattg tttcactagc accggaggta ttataatggc ggttaaatta aaaatcaaaa
     5461 aaggtgatag cgttaaggtt atcacaggcg atgataaagg taaaacaggt aaagttttag
     5521 cggtatatcc aaaaacactt aaagtggtag ttgaaggatg taaaatcgct aaaaaagcta
     5581 ttaagccgag tgagaaaaac ccaaatggtg gttttatcaa taaagaaatg ccaatggata
     5641 tttccaatgt ggcaaaagtt caggagtaag cgatgatgag attaaaagaa aaatataatc
     5701 aaagcattaa acctgcattg gttaaagaat ttgatattaa aaatcctatg cttatccctg
     5761 tgatcgaaaa agtagttatc agcgtaggtg ctggtgagtt ggctaaagat caaaaagtat
     5821 tgcaaaatgt tgcagatact atttctttaa ttgcaggaca aaaggctgtg attactaaag
     5881 ctaaaaaatc agttgcagga tttaaagttc gcgaaggttt tcctgtaggt gtaatggtaa
     5941 ctttaagaaa agaaaatatg tatgcttttc ttgataaatt aatttctatt gctttgccaa
     6001 gggtgaaaga ctttagaggt ttaagtagag atggttttga tggacgcgga aactataact
     6061 tcggtcttga tgagcagttg atgttcccag aagtggagta tgataaaatt ttaagaactc
     6121 atggtatgaa catttctata gttacaacag cacaaaatga caaacaggca caaaagttat
     6181 tagaacttat cggtgtgcca tttacaaaag gaaagtaaga tggctaaaaa atcaatgatt
     6241 gcaaaagcgg cacgcaagcc taaatttaag gttagagctt atacaagatg ccaaatttgt
     6301 gggcgtccgc attcggttta tagagatttt ggaatttgca gagtttgctt aagaaaaatg
     6361 ggcaatgaag gtttgattcc aggtcttaag aaagcaagtt ggtaaggata aaatatgata
     6421 aatgatatta tttcagattc actcactcgt atcagaaatg caggaatgag aaagcttgaa
     6481 acaaccaagc ttttacattc taaagttgta gaagctttag ttggaatttt tcaagctaaa
     6541 ggctatattg agagttttaa tgttattgaa gaagataaaa agaaatttat caatgtagtt
     6601 ttaaaatacg atgaaaaagg taagagtgtt atcaatgagc ttaaaagaat ttctaagcct
     6661 ggtcgtcgtg tttataaagg taaagatgaa atcaagcgtt ttaaaaatgg ttatggtact
     6721 atcgtagtta gcacaagtca tggtgtttta gctaatgatg aagcttataa agcaggtgtt
     6781 ggcggcgaaa ttttatgtac catttggtaa aaaatctgct ttttatggca ttgggtatcc
     6841 attcttttaa aaaagtagaa atatcctaga caaataaaaa ggaaaaatat gtctcgtata
     6901 ggtaaacaac cgattgctat tccagcagga gtagaagtaa aattagaagg aaatttgctt
     6961 aaatttaaaa aaggaaattt ggcaaaagaa cttgatacta aagcaaatgt aaatgttgag
     7021 attaaagata ataatattct tttttctcca aaaggtgaag acagacaaag tagagcttat
     7081 tggggaactt acagagcttt agcttacaat atcgttgtag gtttaactca aggtttttca
     7141 aaaactcttg aaatcaatgg agttggttat aaggcagctt taaaaggtaa agttttagaa
     7201 ctaagccttg gtttttctca tcctattaat tatgatattc cagaaggaat tgaaattgta
     7261 gtggataaaa atactattgc agttaaagga agtgataaac aagttgtagg tcaagttgct
     7321 gctcaaattc gtgaatttag accgccagag ccatataaag gaaaaggcgt taagtattct
     7381 gatgaacgca ttatccgcaa agctggtaag acatctaaga agtaagggta gaatatgaga
     7441 gcaaatgtat taaaaagaaa actaacttta agaatcaaaa gaaaaaaaag aattagagcg
     7501 aaaatttcag gttgtgaaaa ttttccaaga atttctgtat ttaaatcaaa cagaactcta
     7561 tatatccaag cgattgatga tgtaaaagct gtaactttag cagcagttga tggacgcaaa
     7621 cttggcgtta aagcaaataa agaaggtgct aaaaaaatcg ctgctgaatt tgctaaaact
     7681 ttaaaagtta aaaagataga acaagctgtt tttgatagaa atggttatgt atatcatggt
     7741 gttatcgcag cattggctga atctttaaga gaaaatggca ttaggctata aggggtaaat
     7801 cgatggaaaa atataataga gaagaatttg aagaagtaat cgtcgatatc ggcagagtta
     7861 ctaaggttgt taaaggtggt agaagattta gatttactgc tttagttatc gttggaaacc
     7921 gcaaaggttt agtaggtgtt ggttatggta aggctaagga agttccagat gccatccgta
     7981 aagctgttga cgatgcgttt aaaaatatcg ttgaagttaa aactaaaggc tcaactattg
     8041 ctcacgatgt agaggtgaaa tacaacgcaa gtagaatttt acttaaacca gctagcgaag
     8101 gtacaggagt tatcgcaggt ggttctacac gccctatcgt ggaacttgca ggtattaaag
     8161 acatcttaac caagtctttg ggttcaaata attcagctaa tgtggttcgt gctacaatca
     8221 aagctttaac aatgttaaaa ggataagaag atgaatttaa caaaagcagc gggttcaacg
     8281 cataaaacta aaagaattgg ccgtggtcaa ggttctggca tgggtaagac tgctactaaa
     8341 gggggtaaag gtcaaactgc tagaaaaggt tataatgaaa aaagaggttt tgaagggggt
     8401 caacaaccac ttcaaagaag actaccaaaa gtaggtttta cttctaaaat tcaaaaacct
     8461 tatgtgatca atgttgaaaa aatcacagct gtaaaagagc ttagtgaaat tacatttgag
     8521 agcattaaaa gtgttcacaa aatttcaaaa tctgtgaata aaatcaaatt aattggtgca
     8581 agtgcaaaag acttagtatc aaaaatcaaa gacgagaata ttagcgtcac cggatcaaaa
     8641 taatgaatag agcattgacg aataagattt taatcacctt agcattttta tttgcttata
     8701 gggttctggc ttatgtgcca gttcctggcg tcaatgctga tgtgattgcg gaatttttta
     8761 ataacaatca aaacaatgct ttgggtttat ttaatgtttt tagtggtgga gcggctgaac
     8821 gcttttctat catttcttta ggtattatgc cttatattac tgcttctatt attatggagc
     8881 ttcttgcagc aacttttcca aatattggta agatgaaaaa agagcgtgat agtatgcaaa
     8941 aatatatgca aattatccgt tatgcgacta ttgtgattac tttggttcaa agtataggcg
     9001 ttgctatagg tttgcaaagc ttgcacggtc gtggtggtgc aggggctata atggtggaag
     9061 atttaaatat gtttatcgca ctttgtgcta tttctatgct tgctggaact atgcttttaa
     9121 tgtggcttgg cgaacaaatc acacaaagag gtataggaaa tggtatttct ttaatcattt
     9181 ttgcaggtat tgtttcaggt attccaagag cgatttcagg aactgtagga caaatcaatt
     9241 caggcgagat gaatttctta accgcttttg caatttttgc tttgatttta atcaccatag
     9301 gggtgattat ttatatagaa cttggagaaa gaagaattcc tatttcttat tctcgtaaag
     9361 ttgtaatgca aaatcaaaac aaacgcatta tgaattatat tcctattaaa ctcaatctta
     9421 gtggggttat tccaccgatt tttgctagtg cgattttgat gtttccaaca acaattttac
     9481 aaactagtac aaatccttat ctacaagcca ttaatgactt tttaaatcca aatggttatt
     9541 tgtttcatgt tctaactttc ttgtttgtaa ttttctttgc ttatttttat gcttctatcg
     9601 tatttaacgc taaagacata gcagaaaatt tgaaaaaaca aggcggtttt atccctggaa
     9661 ttcgtccagg tgaaggaact tcaagttatc ttaacgaagt ggcttctcgt ttaactttat
     9721 caggttctat ttatttaggg cttgttgcaa ccttaccttg ggttttggtg aaatttatgg
     9781 gtgtgccttt tcattttggc ggcacttctg tacttattgt agttcaagta gcacttgata
     9841 cgatgagaaa aattgaagct caaatttata tgagtaaata ccaaacttta agtgcggtag
     9901 gtttgtaata aataaaatta gcaagatttt tcttgctaat ttattctagg tttttgcttt
     9961 aaaaataaaa acacaatgca cactataaaa attactattg accatattaa aaaagcatct
    10021 acaagaccca tttgtctaac gataggttga gagataatag gacttaaaaa ttgtcctaaa
    10081 aatatacaac ttgctaaaat tccataagcc ctagagcgag cattttcagg acagattgaa
    10141 aaaagataag ccgtattatt tacaagcata atacctccac ccattccaag caaagctaag
    10201 gcgattaaaa ctgtgaaaaa gctatctact aaaaaaagca gcaaaaaaga acaagatacg
    10261 ataaaaagag ttaaaacata aatagtttta atacttaaga attttataat atatctatag
    10321 cttagagaga aaaaaccata acatagtgca gatacagaca tcgaaatacc tatatattta
    10381 ggatccaatc ccaaatgttc ttctatatag taaggaagtt gagttggcga aatataataa
    10441 actaccatga taaaaaaacc tataaaatag atagggaaaa attgccaata atttgttttt
    10501 gtttctattt ttgtatgatt atagaattta aattttctag gttcaaaaag ataaatgata
    10561 gccattaagg taattaaaat tccaagtcca tataccaaaa aaggataacg ccaagaataa
    10621 cttgaaacaa atcccgcaat agaaataaaa acagcacccc ctatcgcaca aaaaaatcct
    10681 tgaaggctta aagcattttc tctgcgatta aagccaccac gactataata atccccaagc
    10741 aaagccgaag cgcctatcat tataaaagca gttgccatac caaaaatagc tcttgaagtc
    10801 agtatagcat aaatatcatt taagaaaaag ccacttatcc cagaaatagt ccaaaccacc
    10861 atagctggaa gaatgaattt taatttgcca aatttatcca ttaaaatacc agcaaatgga
    10921 gataaaatga caacaaaaat agcagggatg gttaaaacta agcgaacaag tatatcaaga
    10981 tgagctaatg tgaaacttga agcaagagta gcgccacttt gggttaaaag ttcttcaaaa
    11041 tgtctgttga tagcaggcag agcagatgaa atgaccacgc ttcctagcat agtcatagca
    11101 gccatagaaa acacagctgc tttaaatccg gacttttcag taatttgaat tattttttat
    11161 ccatttttgt gtcatttgga tgaaatttat aagttttgtc attcataatt tttacctttt
    11221 ttattttatt atactccaaa aattatggtt tgtatttaaa at
//
LOCUS       DBBXPZ010000053        11243 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.055, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000053 DBBXPZ010000000
VERSION     DBBXPZ010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11243)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11243)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11243
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.055"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            23..1144
                     /locus_tag="ACJFD7_001199"
     CDS             23..1144
                     /locus_tag="ACJFD7_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl sugar amidotransferase"
                     /protein_id="HGG0860009.1"
                     /translation="MIYCDHCVMPNTRPGIKFTKDKKGKNICSACINHKNKENIDYKA
                     RFKELEVLCDKYRRMNGKFEYDCAIAVSGGKDSHFQVHIMKEKLGMNPILFSVEDNFT
                     MTEAGKKNLKNLSETFGCHIISLKPDIKTQKKVMLKTFEKYGKPTWFIDRLIYSYPFA
                     MALKFNTPLLVYGENVSYEYGGSDTEETPSAKEIFLNGVASDLNINEFIDDEIKEENL
                     QLFFNPNKDKLDKLNPIYLSYFVKWNSYSNYIFAKSRGFTDLEGEWDRTMCAENFDQV
                     DSIGYILHAWMKYPKFGHACASDYAARFVRYGLLSRKEAIELVQKRDHKLDNKCVEDF
                     CNFIGISKTTFWKIVEKHYNMDLFYKNDFGEFKLKNKLQ"
     gene            1162..1838
                     /locus_tag="ACJFD7_001200"
                     /pseudo
     CDS             1162..1838
                     /locus_tag="ACJFD7_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344715.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
     gene            1878..2882
                     /gene="legI"
                     /locus_tag="ACJFD7_001201"
     CDS             1878..2882
                     /gene="legI"
                     /locus_tag="ACJFD7_001201"
                     /EC_number="2.5.1.101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N'-diacetyllegionaminate synthase"
                     /protein_id="HGG0860010.1"
                     /translation="MKKTLIIAEAGVNHNGDLNLAKKLIEIAADSGADFVKFQSFKAK
                     NCISTKAKKAPYQLKTTANDESQLQMVQKLELDLKAHKELILHAKKCNIAFLSTPFDL
                     ESVDLLNELGLKIFKIPSGEITNLPYLKKIAKLNKKIILSTGMANLGEIEEALNVLCK
                     NGTKRQNITLLHCTTEYPAPFNEVNLKAMQSLKDAFKLDVGYSDHTRGIHISLAAVAL
                     GACMIEKHFTLDKNMSGPDHKASLEPQELKMLCTQIRQIQKAMGDGIKKASKSEQKNI
                     NIVRKSLVAKKDIKKGEIFSEGNLTTKRPANGISAMRYEEFLGKIATKNYKEDELIRE
                     "
     gene            2875..4029
                     /gene="legG"
                     /locus_tag="ACJFD7_001202"
     CDS             2875..4029
                     /gene="legG"
                     /locus_tag="ACJFD7_001202"
                     /EC_number="3.2.1.184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-N,N'-diacetylbacillosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HGG0860011.1"
                     /translation="MSKRKICIVSATRAEWYLLRNLCHEIQNDKDLSLQIIATGAHLS
                     PEFGLTYKEIEKEFKITKKIPILLANDDKISLCKSMSLAFSAFSDAFEDLKPDMVVIL
                     GDRYEMLSVASVCLLMHIPLVHLCGGELTLGAIDDSIRHSISKMSHLHFVSHEIYKKR
                     LLQLGEEEKRVFNIGSLASTIIKNMNFLNKKDLEKALEMKLDKELYLITYHPLTLNVK
                     NTQKEIKTLLKKLDTLKNASLIFTKANADENGLLINEILQNYCQKNSHKAKLFDNLGS
                     QKYLSLMKIAKAMIGNSSSGISESPFFKTPCINIGDRQKGRLRTQNIIDSEINDLDQA
                     FEKLESKEFKQNLKNFKNPYDNDKNPNKIIKTCLKNVNLDTILHKNFIDL"
     gene            4038..5063
                     /locus_tag="ACJFD7_001203"
     CDS             4038..5063
                     /locus_tag="ACJFD7_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HGG0860012.1"
                     /translation="MDINKLKLTPDSSIKEALKIVGQERVRLGIIVDKKDKFLGVISD
                     SNIRKALISGKTLKDSIKDIYTKNPITIKENTSKEQLLKISAKTDIYDFPVLDEKGQI
                     LSIKSISSLLKANPNSIIIMAGGLGSRLKELTKDTPKPMLKVGKKPILESIIQRLKNQ
                     NFENFIFCVNYKKQIIEDYFQKGQKFGVKISYIKERKKLGTAGALSLIKQEFKKSFIV
                     MNADILTELDFNALLKAHKKSKALMSVCVREFEQQIPYGVITQKQGFIENIEEKPTQK
                     FLVSAGIYVLENEILNLIAKNEYLDMPELIKLVLQKGKVNTYIINDYWIDIGRPDEFL
                     KANEDFK"
     gene            5060..5965
                     /gene="ptmF"
                     /locus_tag="ACJFD7_001204"
     CDS             5060..5965
                     /gene="ptmF"
                     /locus_tag="ACJFD7_001204"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamine-D-fructose-6-phosphate isomerase
                     subunit"
                     /protein_id="HGG0860013.1"
                     /translation="MKVLIIGFGSIGKKHFLALKNLNHEVSLLSLSAKKEEFKNTPIY
                     RSLKECDLNEFDLFIIANITTEHFNTLKTLDELVKDKTILVEKPLFEKSQNFTSSKNH
                     IYVAYLQRFNPVIVALKRLLKGEKIYFASLVCNSYLPHWRALDYRQNYSAKKELGGGV
                     LLDLSHEIDLAFFLFKDLELIYSQNAKISELDITSDDFAFLALKNSQEAKIHIELDYF
                     AKFNKREIIIHTLEKSFKADLINNKIEIYHKNQSQKILNFENDTIKTLQNLHHAVFEK
                     DKELCDLKQALKVLELCDEVRKKNG"
     gene            5958..6665
                     /gene="legF"
                     /locus_tag="ACJFD7_001205"
                     /gene_synonym="ptmB"
     CDS             5958..6665
                     /gene="legF"
                     /locus_tag="ACJFD7_001205"
                     /gene_synonym="ptmB"
                     /EC_number="2.7.7.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N,N'-diacetyllegionaminic acid synthase"
                     /protein_id="HGG0860014.1"
                     /translation="MAEILCTICARGGSKGVKNKNIRKINELEMIAYSIIQAQNSKLF
                     KHIVISTDSDEIASVAQKYGAEVFFKREAHLANDRTAKLPVMRDALLRSEEHFKTCFE
                     TLIDLDASAPLRSSLDIKKAYESFVENDNSNLITAVPARRNPYFNLVEIQNNKVVKSK
                     EGNFTTRQSAPKCYDMNASIYIFKRDYLLENDSVFGKNTGLFVMDESTAFDIDSELDF
                     KIVEFLISLKNLSPKDF"
     gene            6665..7435
                     /gene="ptmA"
                     /locus_tag="ACJFD7_001206"
     CDS             6665..7435
                     /gene="ptmA"
                     /locus_tag="ACJFD7_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin modification protein PtmA"
                     /protein_id="HGG0860015.1"
                     /translation="MLENKIIFVAGACGRIGKALCEKILLSKGIPILADINKECLNKL
                     QENLETNFKTKLLSLELDITKQESLQTALQKSQERYGKIDAFVNSSYPFGKDWGKTPY
                     YELKYEQICESLNLHLAGFMLAAQEFVKFFKQQGYGNIINLSSIMGVYAPKFENYEGT
                     SMQSSLEYSVIKAGINHMSSWLAKELFNQNIRVNTLASGGILDNQNELFLKAYRKCCA
                     SKGMLDADDVCGTLVFLLSDESKFITGQTLVVDDGWGL"
     gene            7423..9384
                     /gene="pseD"
                     /locus_tag="ACJFD7_001207"
     CDS             7423..9384
                     /gene="pseD"
                     /locus_tag="ACJFD7_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin modification protein PseD"
                     /protein_id="HGG0860016.1"
                     /translation="MGLMMIFTPTQKELFNKNIESLSNILLKESLKEIKSSKFELILG
                     KDNLDINLKDTSDNTFLYENVIDELNTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQ
                     NKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARLMVLNTNKPEIQDYNELCSSKPFF
                     QFSRIYFLELMSHYYERFHEDVLELNKKLVQDFKDSILSHGNDPLDALQGIEQFVYNL
                     PQMITHPSYKELLSKRKNLSDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPIL
                     AKHGIKPDYVLSLERIPLTSEFFNNDFGEFDKDIVFVLKSYVHPHTTKYLQKNNRNFM
                     LVSTYASFINYLKLDDFGYFNMGFSVANMNFLLAIHLKHKNIVLIGQDLAYAKDGLSH
                     TKDYSNLDKHEGHFQRDKNKYTTQAYGDNGKVESSFVWTLFRHNFEQDVANAKKNYYI
                     TTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKV
                     YQSIKHCRDFSNKFIKSYDKIKNSFMSLQNSQENETLIKEIIKDIDKIKTQIDELYNT
                     QKDLMQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQ
                     ENALIKNILPLEEKLKERKLDKWMERVRR"
     gene            9381..11240
                     /locus_tag="ACJFD7_001208"
     CDS             9381..11240
                     /locus_tag="ACJFD7_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HGG0860017.1"
                     /translation="MREELFLKNTQALFEVDEFLACTLRSLKYLTFALIQDENGINFK
                     KDDIFLYENPNKELLENLTLFKTEYNKYPVLFFYGFGNGMFYKTLCKNKQHKHIIIFE
                     DNLEILTLAFHLFDFSEELKKEQLILFYTPNINTAQLTTLFTYEIIQKSVKIFNLFIH
                     NDFYQQFYSTQIQNINTQLIEMIRFIVLNKGNDPHDSLVGIKHTLDNLPKMLNHGIFQ
                     EFLKERRAKVENAIIVSTGPSLIKQLPLLKKYANKTTIFCADSSYPILAKHGIKPDYV
                     CMLERDDIVSKCFDNDFGDFNKGILFILASVVHKEVLDFLEKDQRAYMLVHRPLNFAA
                     SLKLDEYGYLGVGHSVSNMIYELAGALRFENIIFIGQDLAYGEDGSSHPKEHIHGSQG
                     EEIRGEKYTLAYGGKGKVRTQLTWNLFRQAFEKDIFWAKEKLNITTYNCTEGGARIEG
                     TIEKPFLWACENLLDKDLNKPFDFPKFLDKKLAKEKLEKTKKYLQKSILESKEFIKKT
                     QTQLQKLRYTLEKNDKNFQTLEKIKNDFLNLFKEFKKLKLFNELCQAIYFHNECEILK
                     FEVLNTNKQKENLIDFLKIQHNWFIQGLGYLDTQNKIIEKSLENWNFDDIIKK"
BASE COUNT         4374 a         1570 c         1763 g         3536 t
ORIGIN      
        1 ttattaaatt gaaggggtgg aaatgattta ttgcgatcac tgcgtgatgc caaatactag
       61 acctggtatt aaatttacaa aagataaaaa aggtaaaaat atctgttcag cttgcatcaa
      121 tcataaaaat aaagaaaata ttgattataa agcaaggttt aaagagcttg aagtcttatg
      181 cgataaatac cgcagaatga atggaaaatt tgaatatgat tgtgctattg ccgtaagtgg
      241 aggtaaagat tcgcattttc aagtgcatat catgaaagaa aaacttggaa tgaatcctat
      301 tctttttagc gttgaagata atttcaccat gactgaagca ggcaagaaaa atcttaaaaa
      361 tttaagtgaa acttttggtt gtcatatcat tagcttaaag cctgatatca aaactcaaaa
      421 aaaagttatg ctaaaaacct ttgaaaaata tggaaaacct acttggttta ttgatagact
      481 aatttacagc tatccttttg ctatggcttt aaaatttaat acacctttat tggtttatgg
      541 agaaaatgtt agttatgaat atggaggtag tgataccgaa gaaactccta gcgctaaaga
      601 aatattttta aatggtgtag ctagtgattt aaatataaat gaatttatag atgatgaaat
      661 caaagaagaa aatttgcaac tctttttcaa tccaaacaaa gataaactcg ataaacttaa
      721 ccctatctat ctaagttatt ttgtaaaatg gaattcttat agcaattata tttttgctaa
      781 aagtcgtggt tttactgatc tagaaggcga atgggataga acaatgtgtg cagaaaattt
      841 tgatcaagtt gatagtatag gctatatcct acacgcttgg atgaaatacc ctaaatttgg
      901 tcatgcttgt gcgagtgatt acgcagctcg tttcgtgcgt tatggacttt taagcagaaa
      961 agaagctatt gaacttgtgc aaaaaagaga tcataagctt gacaataaat gcgttgaaga
     1021 tttttgcaat ttcataggta ttagtaaaac tacattttgg aaaatagtag aaaaacatta
     1081 caatatggat ttattttata aaaatgattt tggagaattt aaattaaaaa acaaattaca
     1141 ataaaaatat aaaggaaaaa aatgcaaaac tcattagaag cttatacaat gaaatataat
     1201 gaaaatggat acggattact ttttccagat ggtcatgtag tacgttttta tgaaagaatt
     1261 ttaaaataca aactaaataa aataaatgga aatttacttg attttggttg tggcaatggt
     1321 gtacattcag cgtattttca aagcaaaggg tttaaaactt ttggaataga tatagttcca
     1381 agtttaaaag aaatttggga gcaaaatatt agcggggggg gggatattgt aaaattatag
     1441 aaccaaattc tagcatcaaa ggactttttg atgaaaatat ggatattatc tttgcaaatc
     1501 aaagtcttta ctacatacct ctaaaagaac ttaaacaaaa tattttagaa ttttacgaac
     1561 ttttgaacac aggtggaata ctttttgcta caatgatgag caagaaaaat tattattttt
     1621 cccacagtca aaaagaagaa aaaaatggct tgagtaaagt tgaaattaat ggaagattaa
     1681 atgaaacaag ctttatacat ttcatcgata aagccgaaga tctagaaaat ctttttcaac
     1741 cttttgaaac tttatttcta ggagattatg atcctattaa tttttataat tttgaaggat
     1801 cggcacacca ttatatttat ataggtatta aaaaataaaa ttttgccttt attttaaggc
     1861 aaaataaagg caaaactatg aaaaaaactt taatcatcgc agaagcagga gttaatcaca
     1921 atggtgattt aaatttagct aaaaagttaa tagaaatcgc agcagattca ggagctgatt
     1981 ttgttaaatt tcaaagtttt aaagccaaaa actgtatcag cacaaaggct aaaaaagcac
     2041 cctatcagct taaaaccacg gctaatgatg aaagtcagct tcaaatggtg caaaaactcg
     2101 aactcgatct taaagctcat aaagagctta tcttacacgc aaaaaaatgc aatatcgcct
     2161 ttctttctac tccttttgat cttgaaagtg tagatctttt aaatgagtta ggcttaaaaa
     2221 tctttaaaat tccaagcgga gaaatcacca atctacccta tcttaaaaaa attgcaaagc
     2281 ttaataaaaa aatcatactt tcaacaggta tggcaaattt aggcgagata gaagaagctt
     2341 taaatgtgct ttgcaaaaat ggcactaaac gccaaaatat cactctttta cactgcacta
     2401 cagaataccc tgcccctttt aatgaagtca atcttaaagc catgcaaagc ttaaaagacg
     2461 cttttaagct tgatgtgggt tattctgatc acacaagggg tatacacatt tccctagctg
     2521 cggttgcctt gggagcttgt atgatagaaa agcattttac tctagacaaa aatatgtcag
     2581 ggcctgatca taaagcaagc ctagaacctc aagaactaaa aatgctttgt acccaaataa
     2641 gacaaataca aaaggcaatg ggtgatggca taaaaaaagc aagtaaaagc gaacaaaaaa
     2701 atatcaacat agtaagaaaa agtttagtgg ccaaaaaaga catcaaaaaa ggagaaattt
     2761 ttagcgaagg aaatcttact accaaacgcc ccgcaaatgg tataagtgct atgagatatg
     2821 aagagttttt gggtaagatt gctactaaaa actacaaaga agatgagctt atccgtgagt
     2881 aaaagaaaaa tttgtatagt cagtgcaaca agggctgaat ggtatctttt aagaaattta
     2941 tgtcatgaaa ttcaaaacga taaagatcta agccttcaaa tcatcgctac aggagcacat
     3001 ttaagccctg agtttggact cacttataaa gaaatagaaa aagaatttaa aataactaaa
     3061 aaaatcccta tcctgcttgc aaacgatgat aaaataagcc tttgtaaaag tatgagttta
     3121 gcttttagtg cttttagcga tgcttttgaa gacttaaaac ctgatatggt ggtgatttta
     3181 ggcgatcgtt atgaaatgct tagcgtagca agtgtatgtc tattgatgca cataccttta
     3241 gtgcatttat gtggcgggga gcttacttta ggggctattg atgatagtat aagacacagc
     3301 atttcaaaaa tgtcacattt acattttgta agtcatgaaa tttataaaaa aaggcttttg
     3361 caacttggag aagaagaaaa aagggttttt aatataggtt ctttagcttc tactatcata
     3421 aaaaatatga attttttaaa caaaaaagat ttagaaaaag ccttagaaat gaaactagat
     3481 aaagaacttt acttaatcac ttatcatcct ttaactttaa atgtaaaaaa tactcaaaaa
     3541 gagattaaaa ccttacttaa aaaacttgac acccttaaaa atgcaagttt gatttttacc
     3601 aaagcaaatg ccgatgaaaa tggactttta atcaatgaaa ttttgcaaaa ttactgccaa
     3661 aaaaactcac acaaggctaa actttttgat aatcttggct cacaaaaata cctaagtctt
     3721 atgaaaatag ccaaggccat gataggcaat tcttcaagtg gtattagtga aagtcctttt
     3781 tttaaaactc cttgcattaa tataggcgat agacaaaaag ggcgtttaag aactcaaaat
     3841 atcattgatt ccgaaatcaa cgatcttgat caagcttttg aaaaattaga aagcaaagaa
     3901 tttaaacaaa atttaaaaaa ttttaaaaac ccttatgata atgataaaaa tcccaataaa
     3961 atcataaaaa cttgcctaaa aaatgtaaat ttagatacaa ttttacataa aaatttcatc
     4021 gatttataag gcttagtgtg gatataaaca aactcaaact cacccctgat tctagcataa
     4081 aagaagcttt aaaaatagtc gggcaagaac gcgttagatt aggcattata gttgataaaa
     4141 aggataaatt tttaggagtc attagcgatt caaacatcag aaaagcttta attagtggca
     4201 aaactttaaa agatagtatc aaagatattt acactaaaaa tcccatcacc ataaaagaaa
     4261 acacaagcaa agaacagctt ttaaaaattt ctgctaaaac cgatatttac gactttcctg
     4321 ttttagatga aaaagggcaa attctttcta taaaatctat ctcatcactt ttaaaagcca
     4381 atccaaactc cattatcatc atggctggag gcttaggctc tcgcttaaaa gagctgacta
     4441 aagatactcc aaaacctatg ttaaaagtag gcaaaaaacc cattttagaa agcataatcc
     4501 aaagacttaa aaatcaaaat tttgaaaatt ttatcttttg tgtgaattat aaaaaacaaa
     4561 tcatagaaga ttattttcaa aaagggcaaa aatttggggt taaaatttct tatattaaag
     4621 agcgtaaaaa actaggtaca gcaggggctt taagccttat aaaacaagaa tttaaaaaaa
     4681 gttttatcgt tatgaatgca gacattttaa ccgagctgga ttttaatgct cttttaaaag
     4741 cgcataaaaa atcaaaagct ttaatgagcg tttgcgtgcg tgagtttgag caacaaattc
     4801 cttatggagt gatcactcaa aaacaaggtt ttatagaaaa tatagaagaa aaacctaccc
     4861 aaaaattcct agtaagtgcg gggatttatg tacttgaaaa tgaaatttta aatttaattg
     4921 ctaaaaatga atacttagac atgcccgaac tcatcaaact tgtattgcaa aaaggcaagg
     4981 taaataccta tatcatcaac gattattgga ttgacattgg aaggccagat gagtttttaa
     5041 aagccaatga ggattttaaa tgaaagtctt aatcataggc tttggaagca taggaaaaaa
     5101 gcatttttta gccttaaaaa atttaaatca tgaagtaagt ttgctttctt taagtgctaa
     5161 aaaagaagaa tttaaaaaca ctccaattta tcgctctttg aaagaatgtg atttaaacga
     5221 atttgatctt tttatcatcg caaatatcac tacggagcat tttaacacct taaaaacttt
     5281 agatgagctt gtaaaagata aaaccatact cgtagaaaaa cctttatttg aaaaaagcca
     5341 aaatttcaca agctcaaaaa atcacattta tgtagcatat ttacaacgtt ttaatcctgt
     5401 gattgtcgct ttaaaaaggc ttttaaaagg tgaaaaaatt tattttgcta gtttggtttg
     5461 taattcttat ttgccccatt ggagagcttt agactacagg caaaattaca gcgctaaaaa
     5521 agagctaggt ggtggggttt tactcgatct ctctcatgaa atcgatctag ccttttttct
     5581 ttttaaagac ttagagctta tatactccca aaatgctaaa atttcagagc ttgacataac
     5641 aagcgatgat tttgcctttt tggctttaaa aaattcacaa gaagctaaaa ttcatataga
     5701 actagactat tttgctaaat ttaacaaaag agaaattatc atccatactt tagaaaaaag
     5761 ctttaaagcc gatttgataa acaataaaat cgaaatttat cacaaaaatc aaagtcaaaa
     5821 aatcttaaat tttgaaaatg atacgataaa aacccttcaa aatttacatc atgcagtctt
     5881 tgaaaaagac aaagaacttt gcgatcttaa gcaggcttta aaagtgcttg aactttgtga
     5941 tgaagtaagg aaaaaaaatg gctgaaattt tatgtactat ttgtgctagg ggtggtagca
     6001 aaggcgttaa aaacaaaaat attagaaaga ttaacgaact tgaaatgata gcttatagca
     6061 tcatacaagc tcaaaattca aagcttttta aacacatagt cataagtact gatagtgatg
     6121 aaatcgcaag tgtagcccaa aaatatggcg ctgaagtttt tttcaaaaga gaagctcatc
     6181 ttgccaatga tcggactgca aaacttcctg tcatgcgtga tgccttgcta agaagtgaag
     6241 agcattttaa aacgtgtttt gaaactctca tagacttaga tgcttcagcc ccgcttcgct
     6301 caagccttga tataaaaaaa gcttatgaaa gttttgttga aaatgataat tccaatctca
     6361 tcaccgcagt tcctgctaga cgcaatcctt attttaacct cgtagaaata caaaataaca
     6421 aggtagtaaa atccaaagaa ggaaatttta ccactcgcca aagtgcccca aaatgctatg
     6481 atatgaacgc tagtatttat atctttaaaa gggattatct tttagaaaat gatagtgttt
     6541 ttggcaaaaa cacagggctt tttgtaatgg atgaaagcac agcttttgat attgatagcg
     6601 agcttgattt taaaatcgta gagtttttaa tctctttaaa aaatttatcg ccaaaggatt
     6661 tttaatgctt gaaaataaaa tcatctttgt agcaggagct tgtgggcgta taggtaaagc
     6721 gctttgcgaa aaaatacttc ttagcaaagg tatccctata ctcgcagata tcaacaaaga
     6781 atgcttaaat aaattgcaag aaaatttaga aacaaatttt aaaacaaaac ttttaagctt
     6841 agaacttgat atcactaaac aagaaagctt acaaaccgcc cttcaaaaaa gtcaagaaag
     6901 atacggcaaa atcgatgctt ttgttaactc aagctatcct tttggcaaag attggggtaa
     6961 aacgccttat tatgaactca aatacgaaca aatttgcgaa agtttaaatt tacatttagc
     7021 aggctttatg ctagccgctc aagaatttgt gaaatttttt aaacaacaag gctatggtaa
     7081 tatcatcaat cttagctcca tcatgggagt ttatgcgcca aaatttgaaa actatgaagg
     7141 cacttccatg caaagctctt tagaatacag cgtgataaaa gcagggatta atcacatgag
     7201 ctcttggcta gctaaagagc tttttaatca aaacatacgc gttaataccc tagcaagcgg
     7261 gggaatttta gacaatcaaa acgaactttt tttaaaagct tatagaaaat gttgtgcaag
     7321 caagggtatg ttagatgctg atgatgtgtg cggaactttg gtgtttttac ttagcgatga
     7381 gagtaaattt atcacagggc aaaccttagt agtagatgat ggatggggct tatgatgatc
     7441 ttcaccccta ctcaaaaaga actctttaac aaaaacattg agtctttaag taatattctt
     7501 ttaaaagaaa gtttaaaaga aattaaatca agtaaatttg aacttatctt aggtaaagat
     7561 aatctagata tcaatctaaa agatacaagt gataatactt ttctttatga aaatgttatt
     7621 gatgaattaa acactatgtt aaacacttat aatgacaaat acctacttta tcctgtattg
     7681 tatttttatg gttttggaaa tggaatttta tttaaagctt tattgcaaaa taaaaatcat
     7741 caacatattg ttgtttttga aaaagatata gaaatcattt ggataatgtt tcatatctta
     7801 gatttttcaa gtgaattgca aagtgcaaga ttgatggttt tgaatacaaa taaaccagaa
     7861 attcaagatt ataatgaact ttgttcttct aaacctttct ttcaattttc tagaatttat
     7921 tttttagaac tgatgagtca ttattatgaa agatttcatg aggatgtttt ggagttaaat
     7981 aaaaagctag tgcaagattt taaagattcc attctttccc atggcaatga tcctcttgat
     8041 gctcttcaag gtatagagca atttgtttat aacttacctc aaatgatcac tcatcctagt
     8101 tataaagaat tactttctaa aagaaaaaat ttaagtgata cagctatcat tgtttctaca
     8161 ggaccatctc ttactaaaca acttccttta ttaaaaaagt atgctagtaa agctacaatt
     8221 ttttgtgcgg attcttctta tcctatttta gctaaacatg gtataaaacc tgattatgtg
     8281 ctttctttgg aaaggattcc tttaacttct gaatttttta acaatgattt tggggaattt
     8341 gataaggata ttgtgtttgt tctaaaatcc tatgtccacc ctcatactac aaaatatctt
     8401 caaaaaaata atagaaattt tatgcttgta tctacatatg caagttttat aaattattta
     8461 aaacttgatg attttgggta ttttaatatg ggatttagtg tagctaatat gaatttttta
     8521 cttgctatac atttaaagca taaaaatatc gttttaatag gacaagattt agcttatgct
     8581 aaagatggac tttctcacac taaagattat agcaatcttg ataaacatga aggacatttt
     8641 caaagagata aaaacaaata taccactcaa gcttacggag acaatggaaa agttgaaagt
     8701 tcttttgttt ggactctttt tagacataat tttgaacaag atgtggccaa tgcaaaaaaa
     8761 aattattata ttaccaccta caactgtacc gaaggtggag caaggataga aggaactata
     8821 gaaaaacctt ttttatgggc ttgtgagaat ttacttgata aagatttaaa taaacctttt
     8881 gaaaaattag aacctttaag tttaaataaa caaaatgaat ttttacttaa ggcttattat
     8941 aaagtttatc aaagtattaa acattgtaga gattttagta ataaatttat taaaagctat
     9001 gataaaataa aaaattcttt tatgagttta caaaattctc aagaaaatga aacccttatc
     9061 aaagagatca ttaaagatat agataaaatc aaaactcaaa tcgatgagct ttataatact
     9121 caaaaagatt tgatgcaaat tttaggtccc ctactaactc aatttgaact taatcttgct
     9181 agaatttatg ttttaaatcc taaaaccaaa gaagatgctt ttaataaaag tattctttgg
     9241 ataaaagaac atttagaatt tatggaatta gtttatggac atattaaagc acaagaaaat
     9301 gctttgatta aaaatatact tcctttagaa gaaaaactta aagaaagaaa attagataaa
     9361 tggatggaaa gggtgagaag gtgagagaag agcttttttt aaaaaatact caagctttgt
     9421 ttgaggtcga tgagttttta gcttgtacac tgagatcact taaatactta acttttgcac
     9481 ttatccaaga tgaaaatgga ataaatttta aaaaagatga tatttttctt tatgaaaatc
     9541 ccaataaaga gcttttagaa aaccttactc tgtttaaaac cgaatataac aaatatcctg
     9601 ttctgttttt ttatggcttt ggaaatggaa tgttttataa aactttatgt aaaaacaaac
     9661 aacataaaca cattatcatt tttgaagaca atcttgaaat tttaacttta gcttttcatt
     9721 tatttgattt tagcgaagaa ttaaaaaaag aacaactaat acttttttat actccaaata
     9781 ttaatacagc acaactcacc acacttttta cttatgaaat cattcaaaaa agtgtaaaaa
     9841 tttttaatct ttttatccat aatgattttt atcaacaatt ttatagcact caaatacaaa
     9901 atataaatac tcaactgata gaaatgatac gatttatcgt tttaaacaaa ggtaatgatc
     9961 cacatgattc tttagttgga atcaaacata ccctagataa tctccctaaa atgttaaatc
    10021 atggaatttt tcaagaattt ctcaaagaaa gaagagctaa ggttgaaaat gctatcattg
    10081 tttctacagg accaagtctt ataaaacaac ttcctttgtt aaaaaaatat gctaataaaa
    10141 ctacaatttt ttgtgcggat tcttcttatc ctattttagc taaacatggt ataaagcctg
    10201 attatgtttg tatgttggaa cgtgatgata tagtttctaa atgttttgat aatgattttg
    10261 gcgattttaa caaaggcata cttttcatac ttgcttctgt ggttcacaaa gaagtattag
    10321 attttttaga aaaagatcaa agagcttata tgcttgtaca tcgcccttta aattttgcag
    10381 ctagtttaaa acttgatgaa tatggatatc ttggagtagg acacagtgtt tccaatatga
    10441 tctatgaact agcaggagct ttaagatttg aaaatatcat ttttatagga caggatttag
    10501 cttatggcga ggatggaagt tcacatccta aagagcatat acatggaagt caaggtgaag
    10561 aaatcagagg agaaaaatat acactagctt atggaggaaa aggcaaagta agaactcaac
    10621 tcacttggaa tttgtttcgt caagcttttg aaaaagatat attttgggca aaagaaaaac
    10681 tcaatatcac cacctacaac tgcaccgaag gtggagcaag gatagaagga actatagaaa
    10741 aacctttttt atgggcttgt gagaatttac ttgataaaga tttaaataaa ccttttgatt
    10801 ttccaaaatt tctagataaa aaactagcca aagaaaaatt agaaaaaaca aaaaaatatc
    10861 tccaaaaaag cattttagaa tccaaagaat ttataaaaaa aactcaaact cagcttcaaa
    10921 agcttagata cactttagaa aaaaatgaca agaattttca aactcttgaa aaaatcaaaa
    10981 atgatttttt aaatcttttt aaagaattta aaaaactcaa gctttttaat gaactttgtc
    11041 aagctattta ttttcataac gaatgcgaaa ttttaaaatt tgaagtttta aacacaaata
    11101 agcaaaaaga aaatttaata gactttttga aaatacaaca caattggttt atccaaggtt
    11161 taggatatct tgatactcaa aacaaaatca tagaaaaaag tttagaaaat tggaattttg
    11221 acgatataat caaaaaataa tta
//
LOCUS       DBBXPZ010000054        11243 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.056, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000054 DBBXPZ010000000
VERSION     DBBXPZ010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11243)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11243)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11243
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.056"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            123..1292
                     /gene="aspB"
                     /locus_tag="ACJFD7_001209"
     CDS             123..1292
                     /gene="aspB"
                     /locus_tag="ACJFD7_001209"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HGG0860018.1"
                     /translation="MLTKRSQVLEESITLAITALANELKAKGEDIISFSAGEPDFDTP
                     QTIKNAAISAIEKGCGKYTAVAGIPEVLKAIQTKFKKDNNLDYETNEIITNVGAKHSL
                     FECIECLVEKDDEVIIPSPYWVSYPEMVKFAGGKPVFIEGLEENGFKITAEQLKKAIT
                     AKTKVLMLNSPSNPVGSIYSKEELTQIAKVLEGTQITVLSDEMYEKLRYDGFDFVAFA
                     SVSEDALKRTVTINGLSKCGAMPGWRFGYMASKNKALISAVKRLQGQSTSNICSITQH
                     AAIPALNGECDEDIEKMRQAFEKRRNLALDMLKQIPKISIYKPEGAFYLFVNIQKIEK
                     DSMKFCQKLLEQEKVAVVPGVGFGMDGYFRLSYAISDEFIKKGLERIAYFIANYK"
     gene            1298..1588
                     /locus_tag="ACJFD7_001210"
     CDS             1298..1588
                     /locus_tag="ACJFD7_001210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860019.1"
                     /translation="MKRPLPFILAATNNGTMIINHLDRHDTSQGSYGVGFQFLNYGSF
                     DSEEIDLCVNLLKLRRKYYEGYVFAIDCGANIGAHTIKWAIEMHDWGGGISL"
     gene            1560..2078
                     /locus_tag="ACJFD7_001211"
     CDS             1560..2078
                     /locus_tag="ACJFD7_001211"
                     /inference="COORDINATES: protein motif:HMM:NF016908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HGG0860020.1"
                     /translation="MTGGGVLAFEAQERLFYALAGNIAINNCFNARAIHAAIGNPEKN
                     QNELEILIPDYTQKASFGSLELKSQNNNEFIGQIPQKKEKVPYLKLDNFNFKRLDLIK
                     IDVEGMEQEVILGCLNHIKTFKPILQIEIIKSNIQDIINILENLEYEIFQSGINILAI
                     YKADPVINHLRS"
     gene            complement(2109..2450)
                     /locus_tag="ACJFD7_001212"
     CDS             complement(2109..2450)
                     /locus_tag="ACJFD7_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HGG0860021.1"
                     /translation="MKIIQWSRAEFSPKEVKINVLIDNEKGKEIQILLAKDSVMKEHK
                     APFAIHIQVLSGKIWFEVEKEKFELNALDMISLEANVAHSLGGLENSIIRLSLNKSDS
                     IQRVNAVLKKP"
     gene            complement(2520..3551)
                     /locus_tag="ACJFD7_001213"
     CDS             complement(2520..3551)
                     /locus_tag="ACJFD7_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002886554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HGG0860022.1"
                     /translation="MFVSVDFFKTFDISNSERLKAKKVQGKKYEIFLNENEQSLITPK
                     VSFKEILRYYYLYPKNAIPSFKLPFFKPDLSDFNTPHITWLGHSSLFISFKEYKILID
                     PVFNTHASPISFINKAFKNAPVYNINDFNEIFAVIITHSHFDHLDAKSIKALKEKARF
                     FITPLKVGNYLKSYGVSEKKIIELDWWSGVEFGDLKIMATPAQHSSSRGDGKNKTLWA
                     SFVMEFLSVDKRVFFSADGGYFTHFKKIGEYFGSFDLACLESGQFNIAWPYSHSFPEQ
                     ILKEAKDLNAKAVMPIHWGRFLAGTHAWNEVVKFLYENLDLPLITPKMGEAYEIGAKF
                     KQDFWWKEG"
     gene            complement(3578..6493)
                     /locus_tag="ACJFD7_001214"
     CDS             complement(3578..6493)
                     /locus_tag="ACJFD7_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HGG0860023.1"
                     /translation="MSNYQEKDLENFIESYLLENHAYIKRTNENYDKNLCLDVELFEN
                     FLQATQSVALEELKKRCGQNYKKELFDRIFSQIKTKGIVKALQGYVEIKGIKIYLAFA
                     KPNTNANEESVKKYEQNSLSIIRQLHYSTQNKNSLDIVIFLNGLPLITIELKNHFTGQ
                     NVFHAIKQYKKDRNPKEAIFNYTIVHFALDNDLCYMSTKLDQDATTFLPFNLGLNNGS
                     GKIGLANGAGNPPSDGIKTAYLWKKIFKKDTLLNLFFNFVQVVKKKNEEIIIFPRYHQ
                     FDVVEKLLAHAKENGTGQRYLIQHSAGSGKSNSISWLAHNLVSLHRLEKNIFDSIIVV
                     TDRKVLDSQIRENVKSFSQTKNLVEAITHGSKQLKNALEEGKKIIITTIQKFPFILDE
                     IKTLKSKTFAIIIDEAHSSQNGSNAQKMAEAIRDKSGDESQNLDDEILEIIKNKKLQS
                     NASYFAFTATPKPKTLEMFGMPCDVNGEQMFIPFHLYSMKQAIEEGFILDVLKGYTTY
                     KSYYKIISCTNDNPKYDKKRASVKLKAYVQNNIKTIEQKSQIMCEHFFQNSFKKINGK
                     AKAMIVTSSRENAVKYYLVFREYLRKNYPHFKAIVAFSGEVNLEGEIYSESGLNGFAE
                     NVLKDEFKKDEYRFLIVAEKYQTGFDEPLLHTMYVDKALSGVSAVQTLSRLNRTCKNK
                     ENTFVLDFVNTHEDIAKSFSVFYEQTYLSEATDDNRIFDLKANLNEYEIYTQEEIDDF
                     ANAILRKEKENIIHAKLDIMLDRFNQKSDDEKLDFYNKAKTYLKEYSFLAQILPYEDI
                     ELEKLYILLKKLASKIILPKSEDLAKGILDNVDFDSYRLQLDKTQDIVLQGNGELKPS
                     FADGSSKSVEAELEELSNIIKDFNNKYANIDFNESDKIAKILYDIKDDIAKNERIRET
                     FSKSDIQNSRIEFDALLKDKIQDILELNLELFKQFNQNIEFKDKIANTMFNMVCNDF"
     gene            complement(6496..8016)
                     /locus_tag="ACJFD7_001215"
     CDS             complement(6496..8016)
                     /locus_tag="ACJFD7_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012108504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HGG0860024.1"
                     /translation="MKIIQVKIKNFRSYANEVIVDFEDLTAFVGKNDIGKSTILEALD
                     IFFDGGVIKIDKNDINKECVKNGDNEIQISVVFDNYPKKLVLDASNLTNLEEEYLLNQ
                     NNKLEIIKKYPNAGKPKIFLKAYHPTNEECKNLHSLKITDLKKITKEKNIMCDNLTKS
                     AELRKAIWQHYSDNLQLQEVEVELNKEEAKSIWEQLERKLPHYALFQSDRTNNDGDNE
                     IQNPLKSAVAQIFKDEKISDKLQAIAEEVINKLQEVTNLTLEKLKDMNPEIAKTLNPK
                     IPTIEQLKWADVFKSVSIAGDEDIPINKRGSGVKRMILLNFFRAEAERKKNNNEKSNI
                     IYAIEEPETSQHQYHQRLLIEALEKLSKEEGIQIIITTHSPSIVKQLQFENIRLVKNN
                     NNIKEIVKLEKHVLPIPSLNEINYLAFDEADEEYHNELYGYIDLQQLLKEYFKDKPTQ
                     KYVNSKTEKEEYPTKTKYIRDQIHHPENTHNPKFTFEELQQSIKDMRDFIQANKGS"
     gene            complement(8030..9331)
                     /locus_tag="ACJFD7_001216"
     CDS             complement(8030..9331)
                     /locus_tag="ACJFD7_001216"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HGG0860025.1"
                     /translation="MKNFKESGIEWLGEIPEHWEVVKINKIVTFVNGYAFENFDFNPI
                     FEIPVIRIGDMQKEKILYDNCLKTKEKEKLKQFLISNNDILIALSGATTGKIAFCNTD
                     NKAYINQRVAIVRSKLKLVKYYFLTRGFSLLIELACNGSAQPNISTKEIGEFKIPLPP
                     LKEQEQIANFLDEKCEQIANFIEKKEKLISLLKEQKQAFINETITKGLDKNINFKDSG
                     IEWLGEIPQHWEVKKLKMLFTLGNGLNITKADFVSYGIPCVSYGEIHSKYPCRLNTTI
                     HALPFVSKTYLADKPQSLLQKGDFVFADTSEDIEGSGNFTSIQSDTPIFAGYHTIILK
                     YKGKINSLYFSFLFDSIFTRNQIRKEVCGVKVFSITKSILKEVQCLIPPLKEQEQIAN
                     FLDEKCEKIDLLIEKTKKQIKLIKEYKTTLINQAVCGRISL"
     gene            complement(9328..11238)
                     /locus_tag="ACJFD7_001217"
     CDS             complement(9328..11238)
                     /locus_tag="ACJFD7_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HGG0860026.1"
                     /translation="MEQSQFQPIVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRID
                     AVLEPTKDKVLKTYNTYKDEFENLESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRI
                     NFENYLDCFSENIKDIILKFKFKNQLDTLEESNILFGVIERFCSPKVNFGIEDILDEK
                     GNVIHKGLSNLGMGYVFEELIRKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIK
                     QGTWLIYDNACGSGGMLTESKEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLI
                     KGENPERIKFGSTLSNDQQNLQFDFMLSNPPYGKSWENDQKILGVEKKGSNSTCNDPR
                     FSVGITSKSDGQMMFLLNMLSKMKFDTPLGSRIASVHNGSSLFNSDSGMVAIRKHIIE
                     NDYLEAIVALPTNMFYNTGIPTFIWIITNKKSEHKKGKVQLINTTNEEYFSKMKKSLG
                     QKQNEMTKEHIEKITELFLNFTSSKDCKILDNEDFGYTKIIIEKPKSVEFLKDDEKFA
                     KLKDKDKILEKLQELEQNPQDFKNREEFIKFLGVKLKKSEENLIIDSDKTNNTEKIPL
                     KTNIQGYYDTEVKPYVANSWIAWESASVGYEILFSKYFYTYTPPRKLEEINNELEKLE
                     KEVQDLLREIVQ"
BASE COUNT         3504 a         1821 c         1571 g         4347 t
ORIGIN      
        1 tttcctaaaa attaatacaa attttcacat ttattgaaat ttataactca tttttaaatt
       61 aaatttattg taaaaatgca attttctgct aaaattaaac aaaaattatt aaggattgaa
      121 aaatgcttac aaaaagatct caagttttag aagaatctat cactttagct atcactgcac
      181 ttgccaatga acttaaagcc aaaggcgagg atatcattag tttttcagcg ggtgaacctg
      241 attttgacac accacaaacc atcaaaaatg ccgctataag tgctattgaa aaaggatgtg
      301 gaaaatacac tgctgttgca ggaattcctg aagtattaaa agctattcaa accaaattta
      361 aaaaagataa taatcttgat tatgaaacaa atgaaatcat caccaatgta ggcgcaaaac
      421 actctctttt tgaatgtata gaatgcttag tagaaaaaga tgatgaagtg attatcccta
      481 gtccttactg ggtaagctat cctgaaatgg taaaatttgc aggtggaaaa cctgtattta
      541 tagaaggctt agaagaaaat ggctttaaaa ttaccgctga acaattaaaa aaagctatca
      601 cagctaaaac caaagttttg atgctaaatt ctccttcaaa tcctgtggga tcgatttatt
      661 ctaaagaaga attaactcaa attgctaaag ttttagaagg aacgcaaatt actgttttaa
      721 gtgatgaaat gtatgaaaaa cttcgctatg atggttttga ttttgtagct tttgcaagtg
      781 taagcgaaga tgctttaaaa cgcactgtga ccattaacgg acttagcaaa tgtggagcta
      841 tgccaggatg gcgttttggc tatatggcaa gcaaaaataa agccctaatt tcagccgtta
      901 aaagacttca aggacaaagc acttcaaata tttgctccat cactcaacat gcagccattc
      961 ctgctttaaa tggagaatgt gatgaagata tagaaaaaat gcgtcaagct tttgaaaaac
     1021 gccgtaactt agccttagat atgcttaaac aaatcccaaa gatcagtatt tataaaccag
     1081 aaggtgcttt ttatcttttt gtaaatatac aaaaaataga aaaagattct atgaaatttt
     1141 gccaaaaatt acttgaacaa gaaaaagttg ccgttgttcc aggtgtaggt tttggaatgg
     1201 atggatactt cagactttct tatgctataa gcgatgaatt tatcaagaaa ggtttagaaa
     1261 gaatagctta tttcattgcg aattacaaat agttaccatg aaaagacctt taccttttat
     1321 acttgcagcc acaaataatg gaactatgat tatcaaccat ctagatagac atgatacatc
     1381 ccaaggaagt tatggagttg gttttcaatt tttaaactat ggtagctttg attcagagga
     1441 aattgatctg tgtgttaatc ttttaaaact acggagaaaa tactacgaag gctatgtttt
     1501 tgcaatagac tgcggtgcaa atattggtgc tcatactatt aagtgggcta tagaaatgca
     1561 tgactggggg gggggtatta gcctttgaag cacaagagag acttttttat gctttagcag
     1621 gaaatatagc aataaacaat tgttttaatg ccagagcaat acatgcagcc attggaaatc
     1681 ctgaaaaaaa tcaaaacgaa cttgaaattt taatccctga ttatacccaa aaagcttctt
     1741 ttggaagtct agaattaaaa tctcaaaaca ataatgaatt tataggacaa atacctcaaa
     1801 aaaaagaaaa agttccttat ttaaaacttg ataatttcaa ttttaaaaga ttagatctta
     1861 ttaaaataga tgtagaaggt atggaacaag aagttatatt aggatgttta aatcatatta
     1921 aaacttttaa acccatttta caaattgaaa ttatcaaatc aaacattcaa gatattatca
     1981 atatattaga aaatttagaa tatgaaattt ttcaatctgg aatcaatatc ttagctattt
     2041 acaaagcaga tcctgtaatt aatcatttac gatcttaacc cataagcctt taaacaaaag
     2101 gcttatgact aaggcttttt aagcacagca tttactcttt gaatactatc tgatttattt
     2161 aaactcaatc ttattataga attttctaat ccacctaaag aatgcgctac atttgcctct
     2221 aggcttatca tatctaaagc atttaattca aatttttcct tttccacttc aaaccaaatt
     2281 ttaccgctta aaacttgaat atgtatagca aaaggagctt tatgctcttt catcacacta
     2341 tctttagcta ataaaatttg aatttcttta cctttttcat tgtcaattaa aacattgatt
     2401 ttcacttctt ttgggctaaa ttccgcccta ctccattgaa tgattttcac aaaatctcct
     2461 tttttagttt tataaaacta tagcaaaaac caaaatataa attataaact tgtgttaatt
     2521 tatccttctt tccaccaaaa atcctgttta aatttagccc ctatttcata agcctcgccc
     2581 atttttggtg tgataagggg taaatctaaa ttttcataaa gaaattttac tacctcattc
     2641 cacgcatgag ttcctgctaa aaatctcccc caatgtatag gcatgacagc ttttgcatta
     2701 agatcctttg cctcttttaa aatttgttca ggaaaagaat gtgaatatgg ccaagcgata
     2761 ttaaactgtc cgctttcaag acaagctaga tcaaaacttc caaaatattc acctattttt
     2821 ttaaaatgtg taaaatatcc tccatctgca ctaaaaaaca ctctcttatc tacacttaaa
     2881 aattccatca caaaagaagc ccaaagggtt ttgtttttac catctcccct acttgaactg
     2941 tgctgtgcag gtgttgccat gatttttaaa tcaccaaatt ctactccact ccaccaatca
     3001 agctctatga tttttttctc actcacccca tagcttttta gataatttcc cacttttaaa
     3061 ggtgtgataa aaaatcgtgc tttttctttt aaagctttta tactcttagc atctaaatga
     3121 tcaaaatgcg aatgcgtgat aatcacagca aaaatttcat taaaatcatt tatattataa
     3181 acaggagcat ttttaaaagc cttgttgata aaagaaatgg gcgaagcatg agtgttaaaa
     3241 acaggatcaa tcaaaatttt atattcttta aaacttataa aaagcgaaga atgtccaagc
     3301 caagtaatat gcggagtatt aaaatcactc aaatcaggct tgaaaaaagg taatttaaaa
     3361 gaaggaatgg cattttttgg ataaagataa taatacctca aaatttcttt aaaagacact
     3421 ttaggagtta taagactttg ctcattttca ttaagaaaaa tttcatattt tttaccctgc
     3481 acttttttag cttttaatct ttcactattt gaaatatcaa aggttttaaa aaaatctaca
     3541 ctcacaaaca tttatccttt tttgacaatt ttatacttta aaaatcatta caaaccatat
     3601 taaacatggt atttgctatc ttgtctttaa attctatatt ttgattaaat tgtttaaaaa
     3661 gttctaaatt taactccaag atatcttgaa ttttatcttt taaaagcgca tcaaactcga
     3721 tacgagaatt ttgtatatcg gatttgctaa aagtttcacg tattctttca ttttttgcta
     3781 tatcatcttt tatatcgtat aagattttag cgattttatc gctttcatta aagtctatat
     3841 ttgcgtattt gttattaaaa tctttgatga tgtttgaaag ttcttctaat tcagcttcaa
     3901 cacttttgct cgaaccatct gcgaacgaag gctttagctc tccatttcct tgtaaaacga
     3961 tgtcttgtgt tttatcaagt tgtaagcgat aactatcaaa atccacatta tctaaaattc
     4021 ctttagctaa atcctctgat ttaggcaaga tgatcttact agcaagtttt ttaagcaata
     4081 tatagagttt ttcaagctct atgtcttcat aaggcaatat ttgtgcaaga aaagaatact
     4141 ctttaagata agtttttgct ttattataaa aatctaattt ttcatcatca cttttttgat
     4201 taaatctatc tagcattatg tccaattttg catgaatgat attttctttt tcttttctta
     4261 aaatagcatt tgcaaaatca tctatttctt cttgggtata aatttcatac tcatttagat
     4321 ttgcctttaa atcaaaaatt ctattatcat ctgtggcttc acttaaataa gtttgctcat
     4381 aaaacacact aaaagatttt gctatatctt catgagtatt tacaaaatct agcacaaaag
     4441 tgttttcttt gtttttgcaa gttcggttta gtcttgatag agtttgtact gcacttaccc
     4501 cacttaatgc tttatccaca tacatagtat gtaataatgg ctcatcaaat ccggtttggt
     4561 atttttccgc aacgattaaa aaacgatact catctttttt aaactcatct tttaaaacat
     4621 tttccgcaaa accatttaaa ccactttcgc tataaatttc accttctaaa tttacttcac
     4681 ctgaaaaagc tacaatggct ttaaaatgtg gataattttt tcttaaatat tccctaaaaa
     4741 caagataata ctttacagca ttttctcttg agcttgttac aatcatagct tttgctttac
     4801 catttatctt tttaaagcta ttttggaaaa aatgctcaca catgatttgt gatttttgtt
     4861 cgattgtttt gatattgttt tggacatagg cttttagttt tacacttgct ctttttttat
     4921 cgtattttgg attatcattt gtacaagata tgattttata gtaactttta taggttgtat
     4981 agccttttaa tacatcaagt ataaatcctt cttctatggc ttgtttcatc gagtaaagat
     5041 gaaaagggat aaacatttgt tctccattaa catcacaagg cataccaaac atttctaagg
     5101 tttttggctt aggcgtagcg gtaaatgcaa aataagaagc attgctttgg agttttttat
     5161 tttttatgat ttctaaaatt tcatcatcta aattttgact ttcatcgcca cttttatccc
     5221 ttatggcttc tgccattttt tgagcattgc ttccgttttg gctagagtgt gcttcatcga
     5281 tgatgatagc aaaagttttg ctttttaaag ttttgatctc atctaaaatg aaaggaaatt
     5341 tttgtatggt tgtgatgatg attttcttac cttcttctaa agcgttttta agctgtttgc
     5401 ttccatgagt gatggcttct actaaatttt ttgtctgtga aaaggatttt acattttctc
     5461 ttatttggct atcaagcact tttctatcgg ttactacgat gatagaatca aagatatttt
     5521 tttcaagtct atgcaagctt acgagattat gcgcaagcca agatatagaa ttactcttgc
     5581 cacttcctgc actatgctgg atcaagtagc gttgccccgt gccgttttct tttgcatggg
     5641 cgagtagctt ttctactaca tcgaattgat ggtatctagg aaatatgatg atttcttcat
     5701 ttttcttttt tacaacttgc acaaaattaa aaaataaatt tagcaaagta tcttttttaa
     5761 agattttctt ccacaaataa gctgttttta taccatcact tggcggatta cctgctccat
     5821 ttgctaagcc tattttgcca ctaccattat ttaaaccaag gttaaaaggt aaaaatgtag
     5881 tcgcatcttg atctaatttc gtactcatgt aacaaagatc attatctagt gcaaaatgca
     5941 ctatcgtata gttaaatata gcttcttttg ggtttctgtc ttttttgtat tgctttatag
     6001 cgtgaaagac attttgtcct gtgaaatggt ttttaagctc tatggtgata agaggcaagc
     6061 catttaaaaa gatcactata tcaagggagt ttttattttg cgtgctatag tgaagctggc
     6121 gtatgataga aaggctattt tgctcgtatt ttttcacgct ttcttcgttt gcattggtat
     6181 ttggcttggc aaaggctagg taaattttga tgcctttgat ctctacatag ccttgcaagg
     6241 ctttaactat gcctttggtt ttgatctgtg agaaaatacg atcaaaaagt tcttttttat
     6301 agttttgccc acaacgcttt ttaagctctt caagtgctac actttgcgta gcttgtaaaa
     6361 aattttcaaa aagctctaca tctaaacata aatttttatc gtaattttca tttgttcttt
     6421 tgatataggc atggttttct aacaaatatg attctatgaa attttctaaa tctttttctt
     6481 ggtagttaga cattgttagc tccctttatt agcttgaata aaatctcgca tatctttaat
     6541 agattgctgt aactcttcaa aagtaaattt aggattatgt gtattttcag gatggtgtat
     6601 ttgatctctt atatattttg tttttgtagg atactcttct ttttcagttt tactatttac
     6661 atatttttgc gtcggcttat ctttaaaata ttcttttaaa agttgttgca aatcaatata
     6721 accatacaat tcattatgat attcttcatc tgcttcatca aaagccaaat aattgatttc
     6781 attaagagaa ggaataggaa gcacatgttt ttccaatttt acaatttctt ttatattatt
     6841 attgttttta actaatctta tattttcaaa ttgaagttgt ttaacaatgc ttggactatg
     6901 agttgtaata ataatttgaa ttccttcctc tttggataat ttttctaatg cttctataag
     6961 taatctttga tgatattggt gttgtgaagt ttcaggttct tctatggcat aaataatatt
     7021 gcttttttca ttattatttt tctttctttc agcttcagct ctaaaaaaat tcaaaagtat
     7081 cattcttttc accccacttc ctcttttatt aataggaatg tcttcatctc cagcaataga
     7141 tacactttta aacacatcag cccatttaag ttgctctatg gtcggaattt taggatttaa
     7201 agttttagca atttctggat tcatatcttt taatttttca agagttaaat ttgtaacttc
     7261 ctgtagttta tttattactt cttcggctat agcttgaagt ttatcagaaa ttttttcgtc
     7321 tttaaaaatt tgagctactg cactttttaa aggattttgt atttcattat ctccatcatt
     7381 atttgttcta tcgctttgaa ataaagcata atgtggcaat tttctttcta attgttccca
     7441 aatactcttt gcttcctctt tattaagctc tacttccact tcctgcaatt gaagattatc
     7501 agagtaatgt tgccaaatag cctttcttaa ttctgcactt tttgttaaat tatcacacat
     7561 tatatttttt tctttggtaa tttttttaag gtctgtaatt tttaaagaat gcaaattttt
     7621 acattcttca ttagttggat gatatgcttt gaggaaaatt ttaggttttc ctgcatttgg
     7681 gtatttttta ataatttcta atttattgtt ttgattcaat aaatactctt cttctaaatt
     7741 ggtgagattt gatgcatcta aaactaattt tttagggtaa ttatcaaaaa ctacagatat
     7801 ttgaatttca ttatctccat tttttacaca ttctttattt atatcgtttt tatctatttt
     7861 gattacacct ccatcaaaga aaatatctaa agcttctaaa atagtagatt ttcctatatc
     7921 attttttccg acaaatgccg ttaaatcttc aaaatcaact ataacttcat ttgcatagct
     7981 tctaaaattt tttatcttaa cttgaataat cttcattgtt ttctcctttt tataaactaa
     8041 tcctaccaca aacggcttgg tttatgagtg tggttttgta ttcttttatg agttttattt
     8101 gttttttggt tttttctatc aataaatcta ttttttcaca tttttcatct aagaaatttg
     8161 cgatttgttc ttgctctttt aagggcggga taagacactg cacttctttt aaaatagatt
     8221 ttgtgatact aaaaaccttt actccgcaaa cttcttttct tatttgattt cttgtaaata
     8281 tagaatcaaa taaaaatgaa aaatacaaag aattgatctt gcctttatat ttcaaaatta
     8341 ttgtgtgata tcctgcaaaa atcggtgtat cggattgaat gcttgtaaaa tttcctgaac
     8401 cttctatatc ttcagaagta tctgcaaaga caaaatctcc tttttgtaaa agtgattgtg
     8461 gtttatctgc aagatatgtt ttgcttacaa atggcaatgc atggatagta gtattaagac
     8521 gacaagggta tttggaatga atttcaccat aactaacaca aggtattcca taagaaacaa
     8581 aatctgcttt agttatattt aatccattgc caagtgtaaa aagcatttta agctttttta
     8641 cttcccaatg ctgtggaatt tctccaagcc attctatgcc actatctttg aaatttatat
     8701 ttttatcaag tccttttgtg atagtttcat ttataaaggc ttgtttttgc tcttttaaaa
     8761 ggctaatgag tttttctttt ttctctatga aatttgctat ctgctcgcat ttttcatcta
     8821 aaaaatttgc aatttgctct tgctctttta gtggtggaag tggaatttta aattccccta
     8881 tttctttggt tgaaatattt ggttgtgcag atccattaca agcaagctca ataagtaatg
     8941 aaaatcctct agttaaaaaa taatatttta caagttttaa tttacttcta acaatggcaa
     9001 ctctttgatt gatataagct ttattatcag tattacaaaa tgctattttt cctgtggttg
     9061 ctccacttaa agcaattaaa atatcattat tactaattaa aaattgtttc aatttttctt
     9121 tttcttttgt ttttaggcaa ttgtcatata aaattttttc cttttgcata tctccgatac
     9181 gaatcacagg aatttcaaaa attggattaa aatcaaagtt ttcaaaagca tatccattta
     9241 caaaagttac tatcttgttg attttcacca cttcccaatg ctccggaatt tccccaagcc
     9301 attctatgcc actctctttg aaatttttca ttgcacaatc tctcttaaaa gatcttgcac
     9361 ttctttttct agcttttcta attcgttatt tatttcttct agttttcttg gtggtgtata
     9421 ggtataaaaa tatttgctaa aaagtatttc ataacccaca cttgcacttt cccatgctat
     9481 ccaagagttt gctacataag gctttacttc tgtgtcataa tagccttgta tatttgtttt
     9541 gagtggaatt ttttcagtat tgttagtttt atcgctatca atgatgagat tttcttcgct
     9601 ttttttgagc tttacaccta aaaatttgat aaattcttct ctgtttttaa agtcttgtgg
     9661 attttgttct aattcttgta atttttctaa gattttatct ttgtctttta gttttgcaaa
     9721 tttttcatca tcttttagaa attctacact ttttggcttt tctatgatga ttttagtata
     9781 gccaaagtcc tcattatcta gaatcttgca atctttgctt gatgtaaaat tcaaaaataa
     9841 ttctgtgatt ttttctatat gttcttttgt catttcattt tgcttttgtc ctaaagactt
     9901 tttcattttt gaaaaatatt cttcatttgt agtgtttata agctggactt tgcctttttt
     9961 gtgttctgac tttttgttgg tgatgatcca tataaaagtg ggaattcctg tattataaaa
    10021 catattagta ggtagggcga ctatagcttc aagatagtcg ttttctatga tatgctttct
    10081 tatagctacc ataccgctat ctgagttaaa aagtgagctt ccattatgca cgcttgcgat
    10141 acgagaaccc aaaggggtgt caaatttcat cttgctaagc atattgagca aaaacatcat
    10201 ttgtccatcg cttttgcttg taatgcctac actaaatctt ggatcattac aagttgaatt
    10261 tgaacctttc ttttccacgc ctagaatttt ttgatcattt tcccaagact taccataagg
    10321 tggattgcta agcatgaaat caaattgtaa gttttgttga tcattgctta aggtagaacc
    10381 aaattttatg cgctctggat tttcgccttt tatcagcata tctgctttgc atatagcata
    10441 agtttcaggg ttgatttctt gtccgtaaag ataaatattt gcctttgact gtataagtcc
    10501 ttcaggatct gtgatgaatt cttttgattc tgttagcata ccaccacttc cacaagcatt
    10561 atcataaata agccatgttc cttgtttgat ctgctctttt acaggcaaaa atacaagatg
    10621 agtcataagc tctataatct ctcttggggt aaagtgctct ccggcttctt cattattttc
    10681 ttcgttaaat ttacggataa gctcttcaaa aacatacccc atgccaagat tactcaagcc
    10741 tttatggata acattacctt tttcatctaa aatatcttct ataccgaaat ttaccttagg
    10801 cgagcaaaat ctttctataa caccaaaaag tatattggat tcttctaggg tatcgagctg
    10861 gtttttgaat ttaaatttta aaatgatatc tttgatattt tcactaaaac aatcaagata
    10921 attttcaaaa tttattctta tgttttttgg atcgtttaga agggtttgta gattaaatcg
    10981 agaataatta aaaaagccta gtttattccc ttgttttcca cctagcaaag attctaaatt
    11041 ttcaaattca tctttatagg tattgtaggt tttaagaact ttatcttttg taggctctaa
    11101 aaccgcatca attcttctta tgattgtcat gggtaagata acatcgcggt atttgccctt
    11161 tacataaaca tcacgaagca aatcatctgc cacactccat ataaagttga caatgggctg
    11221 gaattggctt tgttccatga tgt
//
LOCUS       DBBXPZ010000055        11081 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.057, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000055 DBBXPZ010000000
VERSION     DBBXPZ010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11081)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11081)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11081
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.057"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            1..903
                     /locus_tag="ACJFD7_001218"
                     /pseudo
     CDS             1..903
                     /locus_tag="ACJFD7_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938923.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
     gene            complement(954..1298)
                     /locus_tag="ACJFD7_001219"
     CDS             complement(954..1298)
                     /locus_tag="ACJFD7_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860027.1"
                     /translation="MLTEKIDPKEQIQKEDIKKSKTLIIHLNSYLEAENNLQKIKILV
                     KIYQNLQKCSRTPDLIDIKELEFNKEDIFEELFYALGGLGGIYSVEMIQSRIANFIKI
                     LRGEPKLLLEQF"
     gene            complement(1317..1376)
                     /locus_tag="ACJFD7_001220"
                     /pseudo
     CDS             complement(1317..1376)
                     /locus_tag="ACJFD7_001220"
                     /inference="COORDINATES: protein motif:HMM:NF024750.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1722..1798)
                     /locus_tag="ACJFD7_001221"
     tRNA            complement(1722..1798)
                     /locus_tag="ACJFD7_001221"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1762..1764),aa:Arg,seq:gcg)
     gene            complement(1851..2618)
                     /locus_tag="ACJFD7_001222"
     CDS             complement(1851..2618)
                     /locus_tag="ACJFD7_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CorA family divalent cation transporter"
                     /protein_id="HGG0860028.1"
                     /translation="MLELHENLKKILQAKNLETFYSEIYGQKIFVYVGLNLETWLFND
                     EKIYKLQNEEFKLSSIEEFSNFIKSILEDFKVQNTHFQNLLEHKEGIILKGGFVKNFY
                     KKSFVLRQKINKNLKQINLLSEAFNLLLSEQAQYKKHLKILNLSISILNKNTKEHLTR
                     IDTLYTLTSAIKNEKMNKSIYLLSILSSIFLPLNLIVGFFGMNTNNLFFKDSPYGTLY
                     IFSLICCILIVGFIFYHSKKTKEFDLDEGKKAKKQTK"
     gene            complement(2620..3741)
                     /gene="tgt"
                     /locus_tag="ACJFD7_001223"
     CDS             complement(2620..3741)
                     /gene="tgt"
                     /locus_tag="ACJFD7_001223"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HGG0860029.1"
                     /translation="MEFKLKHKDGMARVCEITTAHSTFLTPVFMPVGTVGAVKSLDAN
                     DMKNELDAKIILANTYHMYLRPTSKVVKDFGGLHGFTKFDRSFLTDSGGFQAFSLSKN
                     SKHFNEGIEFKSHIDGSRHLFTPKSVLDTQYDFNSDIMMILDDLVALPATKERVKISV
                     DRTILWAKEAIAYHKNMQNKGIGIGQNIFGIIQGGTDYEERKRCALSLNEMPFDGLAI
                     GGLSVGEENTLMYETVQNLNPYLDENRPRYLMGVGTPEDLVENVERGVDMFDCVMPTR
                     NARNGTFFTSFGKFNIKKAEFINDHEVIDPTCSCYTCRNFSRGYLNHLFKAKELTFFR
                     LASLHNLHYYLELARKMREAILNNSFTQFKRNFYHLRGK"
     gene            3771..5171
                     /locus_tag="ACJFD7_001224"
     CDS             3771..5171
                     /locus_tag="ACJFD7_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3400 family protein"
                     /protein_id="HGG0860030.1"
                     /translation="MNNILIIIDGILAKHFLERLCFEKGLGYFFTVVCQNSEKNNLNI
                     SSEYIDLHYFDPTSTARLENIMSKDFKQAFIYMQDEFETKKSYEALRSLNPNLEIEIM
                     DFWGLSVNDTHANLADARMTLSRRFMDFLPDIALTAQYIGLGVGEIMEVKIPAGSIFA
                     YRHISSIQQKRWRIVLIYRNSKIYFVKPSFVLEPNDSILIVGDPVVLQSIFHNIRGKA
                     GQFPMPFGSNVFALIDMKNMNQNMQERVLDTTLKLTQKSNAKRFFIHVINPKLGVMYE
                     KLKKLSEDKEGVFFDYFNTDFKQISMWLQNNDIGLVVTDIKNFEKEKQAFFDLKIPIM
                     KVGEASFDELKEAIILSADESELENNANVITDLSKQLDFGVILYYYNPNSQNTTDMEE
                     YFRSLSKLYDKNIQIINKNDENPLLNLQYREDLLQFVSFQKELLNRDFARNLSTNLNR
                     HYYKMRQNYQLFIPVE"
     gene            5217..6272
                     /gene="aroB"
                     /locus_tag="ACJFD7_001225"
     CDS             5217..6272
                     /gene="aroB"
                     /locus_tag="ACJFD7_001225"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HGG0860031.1"
                     /translation="MQVEVKLKENAYKVYIDELEELEFDSKVFILSNPKISGLHLKTL
                     LSKIKAKEIFIATVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGMISDMGGF
                     AASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCESFFLK
                     TLSSRELAAGMAEFIKMAAMFDDSILDFIEKIDEKSFLNATCENEIFTQIIAKSIELK
                     SRVVEQDEKESRLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGL
                     LDKMQSQRIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSNKKINFVLASPLGKGLI
                     KGDISKEDIIATLREFQ"
     gene            6269..7840
                     /locus_tag="ACJFD7_001226"
     CDS             6269..7840
                     /locus_tag="ACJFD7_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HGG0860032.1"
                     /translation="MKKIIILTFFVVFAFGDVNRTIINNINEKINTLNTVISASIWNI
                     RYENFIKYQDINDELIILNLNLKKTSDIHQQEELKRKIANLEEQLNLLKEYKDLNFAQ
                     SLSAPDNIETLSKLTNPLAIIGAFSHIKKLKGEKEEYIFKFNDFKNLVDKIREKNSEL
                     KELVELKPSVENIEALKASDKKLEEFEQALNFASVSYSVYEKKIDEELSRVSAEIKVQ
                     SLRAVNILVAIVIVIAIAFMLKFIAKKYIKDSERYYTATKIINFININIIFLILLFAY
                     IENITYLVTILGFASAGLAIAMKDMFMSMLGWCVIIFGGSFRVGDRVKVFQNDTTYIG
                     DIIDISFLRITLYEELTLETYNKNRRSGRIIFIPNNYVFTNLLANYTHHGMKTVLDGI
                     DISVTFDSNLDKAQEIVENIVTRHAKGYTELARKNIARLQHEYSIKNPKVEPRFFMFF
                     EHWGMRISAWYMTNAYAALVLRSTISKEIIKEFNKHKDIKIAYPSQNLYLGNLNQNHF
                     EQHHENMYFHARNKD"
     gene            7837..9087
                     /gene="mtaB"
                     /locus_tag="ACJFD7_001227"
     CDS             7837..9087
                     /gene="mtaB"
                     /locus_tag="ACJFD7_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0061712 - tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HGG0860033.1"
                     /translation="MKEKVFFKTFGCRTNIYDTELLKSYVKDYEIINDENKAQIIVVN
                     SCTVTNGADSGIKSYVNTMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKI
                     NEFLGAKTSFYELGNLNFIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSR
                     SVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLKNGTTLGKLLQKMGQILGIKRIRL
                     GSLEPAQLDESFLEILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNAIAS
                     KGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVING
                     TLAKERLNTLKSIVEKNNYEFRKKNQVSLEVLVENQKDGFFEGYDQFFNKIKIKSDKD
                     IAKEWIVISEYEVQEKSNFTNLKG"
     gene            9091..10707
                     /locus_tag="ACJFD7_001228"
     CDS             9091..10707
                     /locus_tag="ACJFD7_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HGG0860034.1"
                     /translation="MKNKKIILASFMVLCMLLGILYFKNEPKYIDENLYQSLLSQNLI
                     QKAVIDKDEIWLKAEGENYVIIKDGIDIKTLLSKVPVEVKKDNTLWVFFVLLIFIIAL
                     FISLGYFARKKESAKYPISNKNQNHTQAQNSNINLESSHIKPVISNITFNDVAGVDEV
                     KMELSELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG
                     SSFVEIYVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKARGEMSNVERDSTLNQLL
                     TQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKD
                     KNNNINLNKIAKASVGFSGAGLETLVNEAAINALRRNSALVEESDFYAVLNKVLLGKK
                     KILSFNNEEKKIQATYQAAKALSAYYFDIGFEKITLIEDRFKEYEHNIRSKSELINRI
                     KVYLAGSRAMRLIYNESYTNSQDDFLKIKELLDYMLSFDMLKESNLSEQKKEMDEFLN
                     SMKDKILKLSELLLEKEKIEYDDVKDIMQV"
     gene            complement(10716..>11081)
                     /locus_tag="ACJFD7_001229"
     CDS             complement(10716..>11081)
                     /locus_tag="ACJFD7_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HGG0860035.1"
                     /translation="ADIIISADNLPNVSKEFLQHNFKAPIGIVQKDKNSYEVYLSDGT
                     ELEFDIDGAWKEIENKAFPFDLDFLPQNLANIIKNEFPNTKAREIERKINHYKIKLDN
                     DIKILIDFNGTILYKEFDD"
BASE COUNT         4039 a         1295 c         1816 g         3931 t
ORIGIN      
        1 agcgttggat agaaacttat ttgaaacata ttcaagcatt atcctattca aataatactt
       61 ttttacttta taggcgtatt ttactagaat ttgtagaata ttctttagat tatcaagatg
      121 aaatgcaaat aaacgatata aaaacgactt ttttagtcaa ttttcttaat tatttagaaa
      181 ataattcaaa aaatggcaat aaactatcaa aaaaaaacaa aaataactta tttgagagta
      241 ttaactagct ttttttcttt tataagcgat aataatgatg atttgtttgt tttttccttt
      301 gatatgaaga aaattagatt tagaacagaa aaatcagaag aaaaattaaa ttatcttaat
      361 gaaaatgaaa ttataaggct aaataatgtt ttagagaaag aaaaagcaaa aaaagaagtt
      421 tataatagtt ttagaaactc tttactgata aaacttatgc tttatggagg acttagaatt
      481 tctgaagctt taaatgtaaa actttgtgat tttgaagagg ttgatgatga aatattaaaa
      541 atatccataa taggcaaggg cggtaaagaa caatttgcat ttattaaaaa agaagaagta
      601 gatgatgagc ttgaatattt taaagaaaat atccaagata gtgattacat aatgcaaact
      661 agcacaggaa aacatttaaa tagaagtaat gcttttttga ttgtaaataa tatttacgct
      721 aaagctttga tcagcaaaaa aggacttcat ttgcttagac acactttagc catgagatta
      781 acagccaaag gaacaaacct tgtggtcata caaaaaattc taagacatgc aaatctaaat
      841 actactacta tatatgccaa agcaacaaat gatacaataa aagctgcgtt attgaataat
      901 taatttttct aaaattgagt atttgcatag acttcaagaa gaagtctatg tgtttaaaat
      961 tgttctaata aaagtttagg ttctccgcga agtattttga tgaaatttgc aattctagat
     1021 tgtatcattt ctacggaata tatacctcct aaaccgccta aagcataaaa taattcttcg
     1081 aaaatgtctt ctttgttaaa ttcaagttct tttatatcaa taagatcagg agttcggcta
     1141 catttttgta aattttgata tattttgact aaaatcttga ttttttgtag attattttca
     1201 gcctctaaat aagaatttaa gtgtattatt agggtttttg atttttttat atcttctttt
     1261 tgaatttgtt ccttgggatc aattttttca gttaacatat tattaaaaat atttgctttt
     1321 tctcttgcgc ttgacagtgt ggttgttggg tattttccta ttttaatact ttgtattttt
     1381 ttgtttaacc tatatctaaa ataaaaaaaa gataatagta ccttttagcg aatcttttgc
     1441 ttcgatgtag agattttttg tgtatgcatc tttaatatat gttctttttt tacaattaaa
     1501 gttttaagtt gcttatcatt aacaataatc atttttaata ttcctatgtt aaaaagtata
     1561 tgttattttt gaattttaaa atttaacata tactataaca tatactttta aaattgtcaa
     1621 aattgattat ttgagattat tttagaagct ttcaaacatt gctatatcat gctttagatg
     1681 attattttag atgattcaag attatttaag aaaagaagtg atggtgcgct caagaggatt
     1741 cgaacctctg gccttttgaa ccgcaatcaa atgctctatc cagctgagct atgagcgcaa
     1801 aaataagtta aaattatata taaatattct taaaataagc aaaattttgc ttattttgtt
     1861 tgttttttag cttttttacc ttcatctaaa tcaaattctt tagtcttttt tgaatgataa
     1921 aatataaaac ctacaatcaa aatacagcaa atcaaagaaa aaatataaag tgtaccataa
     1981 gggctatctt tgaaaaaaag attattagta ttcattccaa aaaatcctac gatcaaattt
     2041 aaaggtaaga aaatagaaga aagtatgctt aaaagataaa tacttttatt cattttttca
     2101 tttttaattg cacttgttaa tgtataaaga gtatcaattc ttgttagatg ttctttggta
     2161 tttttattta agatgctgat ggataaattt agaattttta aatgtttttt gtattgtgct
     2221 tgttcgctaa gcaaaagatt gaaagcttca cttagaagat taatttgctt tagatttttg
     2281 ttaatttttt gtcttaaaac aaaggatttt ttgtaaaaat ttttaacaaa accacctttt
     2341 aagataatac cttctttgtg ttctaaaagg ttttgaaaat gagtattttg tactttaaaa
     2401 tcttctaaaa tagatttaat aaaatttgaa aattcttcta tgctagaaag cttaaattct
     2461 tcattttgaa gtttataaat tttttcatca ttaaaaagcc aagtttctaa atttaatccc
     2521 acgtaaacaa aaattttttg tccataaatt tcgctataga aagtttctaa attctttgct
     2581 tgcaggattt tttttagatt ttcgtgtagc tctagcattt tatttgcctc ttaagtgata
     2641 aaaatttctt ttaaattgcg taaaagaatt gttcaaaatt gcttcacgca tctttcttgc
     2701 aagttcaaga taataatgta gattgtgcag acttgccaaa cgaaaaaaag taagttcttt
     2761 agctttaaaa agatggttta aataacccct tgaaaaatta cgacaagtat aacatgagca
     2821 agtaggatct ataacttcat gatcgttgat aaattctgct tttttaatat taaattttcc
     2881 aaaacttgta aaaaatgttc catttcttgc atttctagtt ggcatcacgc agtcaaacat
     2941 atctacccct cgctcaacat tttctactaa atcttcaggc gttcctacgc ccattaaata
     3001 tcttggacga ttttcgtcta gataagggtt taagttttgt actgtttcat acatcaaggt
     3061 gttttcttcg ccaacgctaa gcccacctat agctaaacca tcaaatggca tttcgtttaa
     3121 acttaaagca caacgctttc tttcttcata atctgtgcca ccttggataa taccaaaaat
     3181 attttgccct atacctatac ctttattttg catattttta tgataagcaa tagcttcttt
     3241 tgcccaaagt atagtgcgat caacagaaat tttaaccctt tctttggttg cgggtagggc
     3301 tactaaatca tctaaaatca tcataatatc agagttaaaa tcatattggg tatctaaaac
     3361 actttttgga gtaaaaagat gacgacttcc atcaatgtga cttttaaatt ctataccttc
     3421 attaaaatgt ttggaatttt tacttaaaga aaaagcttga aaaccaccac tatcggttaa
     3481 aaaacttcta tcaaatttcg taaatccatg taaacctcca aaatctttta ctactttgga
     3541 agttggacgc aagtacatgt gataggtatt tgctaaaata atttttgcat caagctcatt
     3601 tttcatatca ttagcatcaa gacttttaac cgctcctact gtgccaacag gcataaaaac
     3661 aggggttaaa aaagtgctgt gtgcggtagt gatttcacaa acccttgcca ttccatcttt
     3721 atgctttaat ttaaattcca tttgttataa tttccttttt ggagtttaaa atgaataata
     3781 ttttaattat aatagatggt attttagcaa agcatttctt agaaaggctt tgttttgaaa
     3841 aaggcttagg ttactttttt acagtagtgt gtcaaaatag tgaaaaaaat aacttaaata
     3901 tttctagtga gtatattgac ttgcattatt ttgatcctac aagcacagcg cgtcttgaaa
     3961 atattatgag taaggatttt aaacaggctt ttatttatat gcaagatgaa tttgaaacta
     4021 aaaaaagtta tgaggctttg cgttctttaa atccaaattt agaaatagaa ataatggatt
     4081 tttgggggtt aagtgttaat gatactcatg caaatttagc tgatgctaga atgactttaa
     4141 gccgtagatt tatggatttt ttaccagata ttgctttaac agctcagtat ataggacttg
     4201 gagttggaga gattatggaa gtaaaaattc cagcagggtc tatttttgct tataggcaca
     4261 taagttcaat acaacaaaaa aggtggcgca tagtccttat ttatagaaat tctaaaattt
     4321 attttgtaaa accatctttt gttctagagc caaatgatag cattttgatc gttggggatc
     4381 ctgttgtttt acaaagtatt tttcataata taagaggcaa agcagggcaa tttcctatgc
     4441 cttttggaag taatgttttt gctttaattg atatgaaaaa tatgaatcaa aatatgcaag
     4501 aaagagtgct tgatactact ttaaaattaa ctcaaaaaag caatgcaaaa agatttttta
     4561 tacatgttat caatcctaaa ttaggggtaa tgtatgaaaa attaaaaaaa ctttctgagg
     4621 ataaagaagg tgtgtttttt gattatttca acacggattt taaacaaatt tccatgtggt
     4681 tgcaaaataa tgatatagga ttagttgtaa ctgatataaa aaattttgag aaagaaaaac
     4741 aagctttttt tgatttaaaa attcctatta tgaaggtggg tgaagcttct tttgatgagc
     4801 ttaaagaagc gattatttta agtgctgatg agagtgaact tgaaaacaat gcaaatgtca
     4861 ttactgattt aagcaaacag cttgattttg gagttatttt atattattat aatccaaatt
     4921 ctcaaaatac tacagatatg gaggagtatt ttagaagttt atctaagctt tatgataaaa
     4981 atatacaaat tattaataaa aatgatgaaa accctctttt aaatttgcaa tatcgtgaag
     5041 atttgttaca atttgtgagt tttcaaaaag aattactaaa tagagatttt gccagaaatt
     5101 taagtacaaa tttaaatagg cattattaca aaatgagaca aaattaccaa cttttcatac
     5161 cagtagaata aataattaat taaatgtgat aaaataaatg caaaaagagt agttcaatgc
     5221 aagtagaagt caagttaaaa gaaaatgctt ataaggttta tattgatgaa cttgaagaat
     5281 tagaatttga tagtaaggtt tttatacttt caaatcctaa gatttcaggt cttcatttga
     5341 aaacattact ttctaaaatt aaggcaaaag aaatttttat tgccactgta aaagatggtg
     5401 aagaatataa aaatttaagc accatggaag aaattttaaa ccaaatgttt aattctaaat
     5461 tggatagaaa aagcgtactt ataagttttg gtggtggcat gattagtgat atgggcggat
     5521 ttgctgctag tatttatcaa agaggtattg attttataaa tattcctact acacttttag
     5581 cttgtgttga tgcagcagta ggtggaaaaa caggtgttaa taataatttt ggtaaaaatc
     5641 ttattggcac tttttatcaa cctaaagctg tatattgtga gagttttttt ttaaagactt
     5701 tgagctctag agaacttgct gcaggcatgg ctgaatttat taaaatggca gcaatgtttg
     5761 atgatagtat acttgatttt atagaaaaaa ttgatgaaaa aagtttctta aatgctactt
     5821 gtgagaatga aatttttact caaattatag caaaaagcat agagcttaaa tcaagggttg
     5881 ttgaacaaga tgaaaaagaa tcaaggctta gaatgctttt aaattatggt catacttttg
     5941 ctcatgttat agaaaatttt acagattata agctttattt acacggagaa gcggtggcta
     6001 taggtatggt tatggcaaat caattggctt taaatttagg gcttttggat aaaatgcaaa
     6061 gtcaaagaat aaaagatatt ttacttaaat tcggtttgcc aatatcatat aaaatcaaca
     6121 atgtagatga attttatgaa gcttttttca tggataaaaa aagctctaat aaaaaaatca
     6181 attttgttct tgctagtcct ttgggtaagg gtttgataaa aggtgatatt tctaaagaag
     6241 atataattgc aactttaaga gaattccaat gaaaaaaatt attattttaa ccttttttgt
     6301 tgtttttgct tttggtgatg taaatcggac tattattaat aatataaatg agaaaattaa
     6361 tactttaaat actgtaatca gtgctagtat ttggaatata cgttatgaaa attttataaa
     6421 atatcaagat ataaatgatg aattaatcat tttaaatctt aatttaaaaa agacttccga
     6481 tattcatcaa caagaagaac ttaaacgcaa gatagcaaat ttagaagagc aattgaactt
     6541 gcttaaagaa tataaagatt taaattttgc acaaagtctt agtgcccctg ataatataga
     6601 aactttatct aagcttacta atcctttggc tattatagga gctttttctc atattaagaa
     6661 attaaaagga gaaaaggaag agtatatatt taaatttaat gattttaaaa atttagtaga
     6721 taaaatcagg gaaaaaaact cagaacttaa ggaattagtt gagcttaaac caagtgttga
     6781 gaatatagaa gctttaaaag cttcggataa aaagctggaa gaatttgagc aagctttaaa
     6841 ttttgctagt gtttcttatt ctgtttatga gaaaaaaatt gatgaagagc tttctcgagt
     6901 aagtgctgag attaaagttc aaagcttaag ggctgtaaat atacttgttg ctattgttat
     6961 tgttatagct atagctttta tgttgaaatt tattgctaaa aaatacatta aggatagtga
     7021 aagatattat actgctacga agattattaa ttttattaat ataaatatta tttttcttat
     7081 tttgctcttt gcttatatag aaaatattac ttatcttgta actatacttg gttttgcctc
     7141 tgcgggctta gctattgcta tgaaagatat gtttatgtct atgcttggat ggtgtgtgat
     7201 tatttttggc ggaagtttta gagtagggga tcgtgtaaaa gtttttcaaa atgatactac
     7261 ctatatagga gatattatag acatttcttt tttacgcatt actctttatg aagagcttac
     7321 gcttgaaact tataataaaa atcgtcgtag tgggcgtatt atatttattc ctaataacta
     7381 tgtttttaca aatttgcttg ctaattatac tcatcatggt atgaaaaccg tgcttgatgg
     7441 cattgatata agtgttactt ttgatagcaa tcttgacaag gctcaagaaa ttgtggaaaa
     7501 tattgttaca cgccatgcca aaggttatac tgagcttgct agaaaaaata tagctcgttt
     7561 acaacatgaa tatagtatta aaaatcctaa agtggagcca aggtttttta tgttttttga
     7621 acattgggga atgagaattt ctgcatggta tatgactaat gcttatgcgg ctttggtatt
     7681 aagaagtacg attagcaaag agattataaa agaatttaat aagcataaag atataaaaat
     7741 tgcttatcca tcgcaaaatt tatatttagg aaatttaaat caaaatcatt ttgaacaaca
     7801 tcatgaaaat atgtattttc atgcaaggaa taaggattga aagaaaaagt tttttttaaa
     7861 acctttgggt gtcgcacaaa tatttatgat acagagcttt taaaaagtta tgtaaaagat
     7921 tatgagatta taaatgatga gaataaagca caaattatcg ttgtaaattc ttgcacggtt
     7981 acaaatggag ctgatagcgg gataaagtct tatgtaaata ccatgcaaaa aaaaggcatt
     8041 aaagttatac ttacaggttg tggtgctgta agcaaaggta aggagctttt agataaaaag
     8101 caagtttttg gagtgcttgg agcgtcaaat aaagataaaa tcaatgaatt tttaggagca
     8161 aagacaagtt tttatgaact tggaaattta aattttattg ataaagatat agtttgtgag
     8221 tatgaaaatc ataccaaagc ttttgtgaaa attcaagaag gttgtgattt tgcttgttct
     8281 tattgtatta ttcctagcgt gaggggaaaa tcaagaagtg tggatgaaaa agctctttta
     8341 aaacaggttg aaattttggg agctaatggt tatagtgaaa ttgttttaac agggactaat
     8401 ataggttcat atgggcttaa aaatggcaca accctaggca agcttttgca aaaaatggga
     8461 caaattttag gtataaaacg cataaggcta ggtagtttag aacctgcaca gcttgatgaa
     8521 agttttttag aaatcttaga tgaagcttgg cttgaaaggc atttacatat tgcattgcaa
     8581 catacaagtg aaaaaatgct tcgtataatg agaagaagat cacatacgga taatgattta
     8641 aagcttttta atgctatagc aagcaaagga tatgctttag ggacggattt tatagtagct
     8701 catccaggcg agagtgaaga gctatggcaa gaagctttaa gaaattttaa agaatttcca
     8761 ctcactcata tccatgcttt tatttttagc cctagaaaca acacgcattc tgctaccatg
     8821 aaagatgtga taaatggaac tttagctaaa gaaaggctaa acactttaaa atccatagta
     8881 gaaaaaaata attatgaatt taggaaaaaa aatcaagttt cacttgaagt tttggtagaa
     8941 aatcaaaaag atggtttttt tgagggttat gatcagtttt ttaataagat caaaattaaa
     9001 agtgataaag atatagctaa agaatggatc gttatatctg aatatgaagt acaagaaaag
     9061 tctaacttta caaatttaaa aggctagata atgaaaaata aaaagataat tttagcatct
     9121 tttatggttt tatgtatgct tttgggaatt ttatatttta aaaatgaacc taaatatata
     9181 gatgaaaatc tttatcaaag tctattaagc caaaatttaa tccaaaaagc tgtgattgat
     9241 aaagacgaaa tttggcttaa ggcagaaggt gaaaattacg taattataaa agatggcata
     9301 gatataaaaa cacttttatc aaaagttccc gtagaggtta aaaaagataa tacgctttgg
     9361 gtgttttttg ttttacttat ttttattatc gcacttttta taagtcttgg ttattttgct
     9421 cgtaaaaaag agtcggctaa atatccaata tcaaataaga atcaaaatca cactcaagct
     9481 caaaattcaa atataaattt agaaagttcc catataaaac ctgtgatttc aaatattact
     9541 tttaatgatg tagcaggtgt tgatgaagtt aaaatggagc taagcgaact tgtggatttt
     9601 ttacaaaatc ctaaaaaata taaagaattt ggtgtaaaaa tgccaaaagg tgttttaatg
     9661 gtaggcccac ctggtgtagg aaaaacattg atagcaaaag cagttgcagg agaagcaggg
     9721 gtgccatttt tttatcaaag tggttcaagt tttgttgaaa tttatgtagg tatgggtgca
     9781 aaaagagtta gagagctttt ttcaaaagct aaaatgatgg cgcctagcat agtttttatt
     9841 gatgaaatag atgccgtagg taaggcaaga ggagaaatgt caaatgttga aagagatagc
     9901 actttaaatc aacttttaac tcaaatggat ggttttgagg acaatagcgg ggttatagtt
     9961 atagctgcga caaataaaat cgaacttatg gatcctgctt tattgcgttc ggggcgtttt
    10021 gataggagaa tttttttatc tttgcctgat tttaaggata gacttaaaat tttagaaatt
    10081 tatatgaaag ataaaaacaa taatatcaat ttaaataaaa tcgctaaagc aagcgtaggt
    10141 tttagtggag cagggcttga aactttggtc aatgaagcag caattaatgc tttaagaaga
    10201 aatagtgctt tagttgagga aagcgatttt tatgctgtat taaataaagt tcttttaggt
    10261 aagaaaaaga ttttaagttt taataatgaa gagaagaaaa ttcaagccac ttatcaagct
    10321 gcaaaagctt tgagtgcgta ttattttgac ataggatttg aaaaaatcac tctcattgaa
    10381 gatcgtttta aagaatatga gcataatata agatcaaaat cagagcttat caatcgtata
    10441 aaagtttatt tggctggttc tagagccatg agattgattt acaatgaaag ttatactaac
    10501 tcgcaagatg attttttaaa gattaaagaa ttgcttgatt atatgttgag ttttgatatg
    10561 ttgaaagagt caaatttaag tgaacaaaaa aaagaaatgg atgaattttt aaattctatg
    10621 aaggataaaa ttttaaaatt atcagagctt ttgcttgaaa aagaaaagat agaatatgac
    10681 gatgttaaag atataatgca ggtttaatga tatgtttaat catcaaattc tttatataag
    10741 atagttccat taaaatctat aagaattttt atatcgttat caagtttaat cttataatgg
    10801 ttgatttttc tttcaatttc tctagctttt gtatttggaa attcgttttt gatgatattg
    10861 gctaaatttt gaggtaaaaa atctagatca aaaggaaagg ctttattttc aatttccttc
    10921 caagctccat ctatatcaaa ttcaagctct gttccatcgc taagatagac ttcataggaa
    10981 tttttgtctt tttgcacgat ccctataggc gctttgaaat tatgttgtaa aaattcttta
    11041 gaaacatttg gtaaattatc agcagaaatt attatatcag c
//
LOCUS       DBBXPZ010000056        10945 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.058, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000056 DBBXPZ010000000
VERSION     DBBXPZ010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10945)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10945)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10945
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.058"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            9..947
                     /gene="rsmH"
                     /locus_tag="ACJFD7_001230"
     CDS             9..947
                     /gene="rsmH"
                     /locus_tag="ACJFD7_001230"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HGG0860036.1"
                     /translation="MILEIPHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKN
                     HPDLKFIACDQDQQALEFSKKRLKDFHNRITFIQSNFSEVLEKISHKEELRGILADIG
                     VSSFQLDNNERGFSVNSDFLDMRMNQNSKISAYEIINTYTKEQLTSIFKDYGELYDAH
                     FIAKKICLERSKNPIKGAKELYQIIGKGKQNHRKISKATLAFQAIRIEVNQELKVLKD
                     FLEHLENLKPKNCILAIISFHSLEDRIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQ
                     IITKKAISASKEELLKNSRSSCAKMRAFYFNNLDNK"
     gene            947..1885
                     /locus_tag="ACJFD7_001231"
     CDS             947..1885
                     /locus_tag="ACJFD7_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860037.1"
                     /translation="MLEDDFIKERQNIRQKMLKFSRAINQGKPLDDDLRDEISSDDIL
                     RRRFKKKTPNKFLKELDEEYESKHTKKSNIYLKEDLINVKLEEKQSLAKKIFSKMKER
                     RKEENKKTKKNFLFSRKKANEIKNIQTKTQIQTKSNQATTQTKQEKKGLTNSIEKIQK
                     TESKIQKPLIIEKKLDVKNQPNIKKSLENLQKKITPQENKQELPKPSNQAQEKQQNDE
                     DAQKAKNILLEGFSNATKEDRNLNFNHLLFAALLVSFALFLFAPQIYIRNQIYYLSRE
                     IATLRTEESVLNEENKDLKRRLENMRFQNQILDYLE"
     gene            complement(1873..2364)
                     /locus_tag="ACJFD7_001232"
     CDS             complement(1873..2364)
                     /locus_tag="ACJFD7_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860038.1"
                     /translation="MKKFKEFSLRFLFKVSEQPVLIRDLLEANALFNDGMLVDPSKLN
                     FNFKILNSYIYFGVFCAVILLPLLLITHYFLTKLDFHISIVSAVMVTACVFIGYDIFK
                     VYTRKIISKKIIQKAWALHFPYFAYEKYSTMAGEFYKEALKEEIPKANLEQYVLDKII
                     HSK"
     gene            2514..6266
                     /locus_tag="ACJFD7_001233"
     CDS             2514..6266
                     /locus_tag="ACJFD7_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Eco57I restriction-modification methylase
                     domain-containing protein"
                     /protein_id="HGG0860039.1"
                     /translation="MNYYQELKKYLNNNLFTSYSLEIDFPKIYNFNANQKAFRDILTK
                     ITKIYDKNKFIKQNEHQFEDEFISKVLEILGWCFVRQDEKIIQGKLEKPDFLLFSNDK
                     LKSKYENLDKETKKSSNDFTIILESKAYNIEIDNKKVKDNPHFQILRYLGNLKKNYGF
                     LTNGRFWRFYDNSILNSNKVFYEINLEKIIEDQNIEAFAYFYSVFSAFNFTEKEDHLE
                     ITLQNNKLSKIKIEDDLKSIIYGTNGNESLFEFIGSRIYNKTKADLKLIYENSLYFIF
                     RLLFIAYFEDKFEIILEKHKYFKSKISLRTLLENLQEDESSSGGFGELENIFNIYNKG
                     KGNFDMPVFNGGLFDESKTALLSTPKIFNDKDLKFILNQLLNFKDKNLSFKRDYKTLS
                     VEHLGTIYEGLLSYFFEIANEDIYYVSYKEKSKEIECYFDNYDFKILEKSKKVEKYTF
                     YKKGQIYLKNTSNSRKASASFYTPQSIANFLIQSALKDKLNNENILKFKILDNACGSG
                     HFLVGVLNTITHIVLSDFDHFTNLKELYEEEKENILNHIKDFVQDYEVDESDILKRLL
                     LKRIIYGVDLNPFSIELTKLSLWIDSFIFTTPLSFIEHHIKCGNALINSNLSDFKDLI
                     KQNSSNLFTNSITQEFEILQEVFEKLDNLKDTNEEQIKQSKQIYQNEITPKLNKLNLY
                     LNYINTLHFVNKEELQILKALSQDDIQNLSQNEQAKAIISKYQKEFNFFNYELEFPEI
                     IENQVFKGFDIIIGNPPWDKTKFSDSDFFPQYKSDYRSLIASKKKEIQDNLLAKDYIK
                     QNYEKQKAYINDLSEYYKKAYPLNKGSGDGNLFRLFVEKNLSLLKQDGNLAYVLPSAL
                     MFEDGSLILRKEILENKTLEYFYSFENNKAIFIDVHRSYKFALMLIKNTQANHTHKIK
                     MMFYKTDINSLKNKDEILTLNLKDIKKLSPTHLALMELKDKQALEILRKSYNAFQNLS
                     FDYIDFRRELDMTNDKDLFIEEFREGLLPLYEGKMIHQFDANFSQATYFLEKAKFDER
                     LKSKELYRAKKATGKELNPKLIKYDREFFRLGYRKIASDTNERTLIASLLPKNCGGAD
                     STYSNIPKQYVLKDDVICMDIVPYERILFVLALFNSLVVDFIIRNMVQINVSKSYLER
                     IPLPQPSDEEIQNNEIYKTLAKNALLLQLYNDKNHHFDELKQEFNIKNEEIPKTKKAY
                     DILRAKNDLLVKELYGLSDDEFSYMISTFKVLNEKQSEYTTLLKTI"
     gene            complement(6294..7484)
                     /gene="ackA"
                     /locus_tag="ACJFD7_001234"
     CDS             complement(6294..7484)
                     /gene="ackA"
                     /locus_tag="ACJFD7_001234"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006085 - acetyl-CoA biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HGG0860040.1"
                     /translation="MKILVLNSGSSSIKFKFFDNKIVKASGLVEKIGEQNSKVVLKNT
                     LNNESFERELTINNHEEGLSIVNELFKESGILADLNALDGCGHRIVHGGRNLSEHCLV
                     DDYVLKEIDRVSIFAPLHNPAHLAGIKTMIKAAPSVANAAIFDTAFHRTMPDFAYMYA
                     LPYDFYDKHNIRRYGFHGTSHAYVSSRAAKFLQKDQNELNVISAHLGNGASVCAIEKG
                     KSMDTSMGFTPLEGLIMGTRCGDLDPAILPFVSHLKGLTIEEIDILMNKKSGVYGICG
                     YNDFRDIEREIEQGNDKARLALDMFCYRLVKYIGSYFAVLPKTDAIIFTGGIGENDSL
                     VRQKVCERLAHLGIELDFELNKQRISGERMINHANSKLKVLVIPTDEELEIARITEEL
                     IGKN"
     gene            complement(7498..9003)
                     /gene="pta"
                     /locus_tag="ACJFD7_001235"
     CDS             complement(7498..9003)
                     /gene="pta"
                     /locus_tag="ACJFD7_001235"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016407 - acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HGG0860041.1"
                     /translation="MMANLYLMRSRSDELNTIISTNLLKNYSKIYKNIAIYCPVIYIH
                     RVPVLQGWLEEFNINQTVKSAYGFTFREAMEEFSKDPHNFFNVILEEYEELKRKYDFV
                     LVNSFCEFGILDGFDLSIKLAKNLNTPIAAIINDEDKLIAQKYFDHALDGRNYVLINE
                     NFNFEEVQKLKEYDFITPHRFKYELIKQSIKNKKTVVLPESNDERILKAAEILLKSKV
                     VDLILLGDEEKIKQDATRLSLDLSAMQIMNPLNSEYNQEFTSILYEARKSKGMSLEEA
                     KMLVQDKTYFGTLLIHTGKADAMVSGASTTTAETIRPALQLIKTKEGISSVSGIFFMG
                     LEDQVLAFADCAVNPSPTAEQLATSAYVSAMTAKSFGLEPRIALLSYSSGDSGKGESV
                     DLVKEALKIAKEKYPELNIDGPMQFDCAYDPKTAAKKMPNSKIAGHANVYIFPDLNAA
                     NICYKAVQRTANALAIGPILQGLKKPVNDLSRGCLVDDIVDTVILSAIQAQ"
     gene            9093..9791
                     /gene="flgH"
                     /locus_tag="ACJFD7_001236"
     CDS             9093..9791
                     /gene="flgH"
                     /locus_tag="ACJFD7_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HGG0860042.1"
                     /translation="MKKVLFYVLPFAFFGCSATVDPQISMKPPAYVEELAPKQSNNVE
                     SAPGSLFGKGDNPLFSDKKAMNVNDLVTVVIQESTTQSTQANKATSRTNTSNLGGGAL
                     TGSSGVVANALNKVNAYSNIGFQTNSSNNYTGTGSQSRNESFNTTISTRVIKILSNGN
                     YFIEGSRELLINGEKQIIQLSGVIRPYDIGQDNTIDSKYIADAKILYKTEGEVDRSTR
                     KPWGSKVIEAIWPF"
     gene            complement(9821..10894)
                     /gene="ispG"
                     /locus_tag="ACJFD7_001237"
                     /gene_synonym="gcpE"
     CDS             complement(9821..10894)
                     /gene="ispG"
                     /locus_tag="ACJFD7_001237"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity (ferredoxin) [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HGG0860043.1"
                     /translation="MEYKRFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIKGSLEQI
                     NRLYFAGANIVRLACLDMADARALKEIKAKSPLPLIVDIHFNHNLAVYCAEFIDGVRI
                     NPGNIGSKENIKEVVKACKERGIPIRIGVNHGSIEKQFSDKFGYGVDAMLESAMYNIK
                     LLEDLDFFDIKISMKTSDAQKTIEAYERLRPLCDYPFHLGVTEAGTKFHSTVKSSIAL
                     GNLLLKGIGDTMRVSMTGELEEEIRVARAILQDSGVQKSGVNIISCPTCGRIQSDLLS
                     AIKIVEEKTKHIKEPLNISVMGCVVNALGEAKGADVAIAFGKNQGLVIRHGEVVAKLK
                     ESELVDRFLAEVEDEVKSRAVKE"
BASE COUNT         4239 a         1696 c         1459 g         3551 t
ORIGIN      
        1 tattaggatt gattttggaa attcctcata tcccagtttt gcttaatgaa gttcaagaga
       61 tttttaaaaa tcttaaaaca ggttattttt tagactgcac tttaggattt ggcggacata
      121 gtgaagcttt gcttaaaaat catcctgatc ttaaattcat tgcttgtgat caagatcaac
      181 aagctttaga attttctaaa aaacgtctta aagattttca caataggata acttttatac
      241 aaagtaattt tagtgaagtt ttagaaaaaa tttcacataa agaagaatta agaggtattt
      301 tagcagacat tggagtttct tcatttcaac ttgataataa cgaaagaggt tttagtgtaa
      361 attctgactt tttggatatg agaatgaatc aaaactccaa aatatcggct tatgagatta
      421 ttaatactta tacaaaagag caattaactt ccatttttaa agattatgga gaattatatg
      481 atgcacattt tattgctaaa aaaatttgcc tagaaagaag taaaaatcca atcaaaggtg
      541 ccaaagagct ttatcaaatc ataggaaaag gtaaacaaaa tcatagaaaa atttccaaag
      601 ctactttagc atttcaagcc attagaatag aagtaaatca agaacttaaa gtgcttaaag
      661 attttcttga acatttagaa aatttaaaac caaaaaattg cattttagct atcattagct
      721 ttcattcttt agaagataga atagtaaaac aatttttcaa aaaatggtca aaaaactgca
      781 tttgtaatga aaaaataatg cgttgcgaat gtggaaataa ccatagccta ggacaaataa
      841 taactaaaaa agctataagt gcgagcaagg aagaactttt aaaaaattct cgctctagtt
      901 gtgctaaaat gcgggctttt tattttaata atttggataa taaataatgc tagaagatga
      961 ttttataaaa gaacgccaaa acatacgcca aaaaatgctg aaattttctc gcgccataaa
     1021 tcaaggcaaa ccgcttgatg atgatttaag agatgaaatt tctagcgatg atattttaag
     1081 acgtcgtttt aaaaaaaaga ctcctaataa attcttaaaa gaactcgatg aagagtatga
     1141 gtcaaaacat actaaaaaat caaatatata tttaaaagaa gatctaatca atgttaaatt
     1201 agaagaaaag caatctcttg ctaaaaaaat tttttccaaa atgaaagaaa gaagaaaaga
     1261 agaaaataaa aaaactaaaa aaaatttttt atttagcaga aaaaaagcaa acgaaataaa
     1321 aaatatccaa accaaaacac aaattcaaac aaaaagcaat caagctacca ctcaaacaaa
     1381 acaagaaaaa aagggactta caaattctat agaaaaaatt caaaaaacag aaagtaaaat
     1441 acaaaaacct ctaattatag aaaaaaaact agatgttaaa aatcaaccta atatcaagaa
     1501 aagtttagaa aatttacaaa aaaaaataac accacaagaa aataaacaag aacttccaaa
     1561 accatctaat caagctcaag aaaaacaaca aaatgatgaa gatgctcaaa aggcaaaaaa
     1621 tattttacta gaaggcttct ctaatgctac caaagaagat agaaacctaa acttcaatca
     1681 tcttcttttt gcagctttac ttgttagttt tgcattattt ttatttgccc cacaaattta
     1741 tattagaaat caaatttatt atcttagtag agagattgct acattaagaa cagaagaaag
     1801 tgttttaaac gaggaaaata aagacttaaa aagaagactt gaaaatatgc gattccaaaa
     1861 tcaaatttta gattatttag aatgaataat cttatctaaa acatactgct ctaaatttgc
     1921 ttttggaatt tcttctttta aagcttcttt ataaaattca cccgccattg tagagtactt
     1981 ttcataagca aaataaggaa agtgtaaagc ccaggctttt tgtattattt tttttgagat
     2041 tattttgcga gtataaactt taaaaatatc atatcctata aatacacaag cagtaaccat
     2101 aacagcgctc actatgctta tatgaaagtc aagctttgtt aaaaaataat gagtaatcaa
     2161 aagcaatggc aataaaatca cagcgcaaaa aacaccaaaa taaatataag aatttagaat
     2221 tttgaaatta aaatttagct tagaaggatc tacaagcatt ccatcgttaa aaagtgcatt
     2281 tgcctctaat aaatctctta taagaacagg ttgctctgat actttaaata aaaaacgaag
     2341 gctaaattct ttaaattttt tcataatcca cgctttattt tttaattaaa attttatcca
     2401 aagaaaatta attccaacta aaaaatcatt ttcataaata agcacaagtc tttaaagttt
     2461 tttagatata atttaaaatg tcaaattttt aaaaatactt tagaaagaaa gccatgaatt
     2521 actatcaaga acttaaaaaa tacctcaaca ataatctttt tacaagctat tctttagaaa
     2581 ttgactttcc taagatttat aatttcaacg caaatcaaaa agcctttaga gatattttaa
     2641 ctaaaattac aaaaatttac gacaaaaata aatttataaa acaaaacgaa catcaatttg
     2701 aagatgaatt tatatcaaaa gtattagaaa ttttagggtg gtgctttgta agacaagatg
     2761 aaaaaatcat acaaggaaaa ttggaaaaac ctgattttct actttttagc aatgacaaat
     2821 taaaatcaaa atacgaaaat ttagacaaag aaacaaaaaa atcaagcaat gatttcacaa
     2881 tcattttaga gtcaaaagct tataatatag aaatagacaa taaaaaagta aaagacaacc
     2941 ctcactttca aattctaaga tatctaggca atcttaagaa aaattatggt tttttaacca
     3001 atggtagatt ttggcgtttt tatgataatt ctatactgaa ttcaaacaaa gttttttacg
     3061 aaatcaatct agaaaaaatc attgaagatc aaaatattga agcttttgcg tatttttata
     3121 gtgtatttag cgcttttaat ttcacagaaa aagaagatca tttagaaata actctacaaa
     3181 acaataaact ttcaaaaatc aaaatagaag atgatttaaa atctatcatt tacggaacca
     3241 atggaaatga atctttattt gaattcatag gctctagaat ttacaataaa acaaaggcgg
     3301 atttaaaact aatctatgaa aattctttat attttatctt taggctttta tttattgctt
     3361 attttgaaga taaatttgaa attatactag aaaaacataa gtattttaaa agtaaaatca
     3421 gtcttagaac cttacttgaa aatttacaag aagatgaaag ctcaagtggt ggctttggag
     3481 aacttgaaaa tattttcaac atttacaaca aaggcaaagg caattttgac atgcctgttt
     3541 ttaatggcgg tttgtttgat gagagcaaaa ccgctctttt aagcacgcca aaaatcttta
     3601 acgataaaga tttaaaattc attttaaacc aattattaaa ttttaaagat aaaaatctaa
     3661 gctttaaaag agattacaaa actttaagtg tagaacattt aggcacgatt tatgaaggct
     3721 tgctttctta tttttttgaa atagcaaatg aagatattta ctatgtaagt tataaagaaa
     3781 aatcaaaaga aatagaatgt tattttgata attatgattt caaaatttta gaaaaatcaa
     3841 aaaaagtaga aaaatacacc ttttacaaaa aaggacaaat ttaccttaaa aatactagca
     3901 actcaagaaa agcaagcgca agcttttaca cacctcaatc catagctaat tttttaatcc
     3961 aaagtgcttt aaaagacaaa ctaaacaatg aaaatatttt gaaatttaaa atactagaca
     4021 atgcttgcgg tagtggacat tttttagttg gagttttaaa tactattaca cacattgttt
     4081 tatcggattt tgatcatttt acaaatttaa aagaacttta cgaagaagaa aaagaaaata
     4141 ttttaaatca tataaaagat tttgtgcaag actatgaagt agatgagagt gatattttaa
     4201 aacgactttt actaaaacgc attatttatg gggtggattt aaaccctttt agcatagagc
     4261 ttactaaact tagcctttgg atagatagtt ttatctttac aaccccactt tcttttatag
     4321 aacaccacat aaagtgcggc aatgctttga taaattctaa tctaagtgat tttaaagatt
     4381 tgataaaaca aaactcaagc aaccttttta caaattccat aacacaagaa tttgaaattt
     4441 tacaagaagt atttgaaaaa cttgacaatc taaaagatac caacgaagaa caaatcaaac
     4501 aatctaaaca aatctatcaa aatgaaatca caccaaaact taataaacta aatttatatc
     4561 taaactatat caacacgctt cattttgtca acaaagaaga attacaaatt ctaaaagccc
     4621 taagtcaaga tgatatacaa aatttaagcc aaaatgaaca agcaaaagct atcattagca
     4681 aatatcaaaa agaatttaat ttctttaact atgagttaga atttcctgaa atcatagaaa
     4741 atcaagtctt taaaggcttt gatatcatca taggtaatcc accttgggat aaaactaaat
     4801 ttagtgatag tgatttcttt ccgcaatata aaagcgatta tagaagctta atcgctagca
     4861 agaaaaaaga aattcaagat aatttgctag cgaaagatta tataaagcaa aattacgaaa
     4921 aacaaaaagc atatataaat gatttaagcg agtattataa aaaagcctat cctttaaaca
     4981 aaggcagtgg agatggaaat ttatttcgtc tttttgtaga aaaaaatctt tctcttttaa
     5041 aacaagatgg aaatttagct tatgtacttc ctagtgcttt gatgtttgaa gatggaagct
     5101 taattttaag aaaagaaatt ttagaaaata aaactttaga gtatttttat agttttgaaa
     5161 acaacaaagc tatctttata gatgttcata gaagctataa atttgctctt atgcttataa
     5221 aaaacacgca agcaaatcac actcataaaa tcaaaatgat gttttataaa acagatataa
     5281 actcattaaa aaacaaagat gaaattttaa ctctaaattt aaaagatatc aaaaagctaa
     5341 gcccaactca cctagcctta atggagttaa aagacaagca agctttagaa attctaagaa
     5401 aatcttataa tgcttttcaa aacttgtctt ttgattatat agattttaga agagaacttg
     5461 atatgacaaa cgataaagat ttgtttatag aagagtttag ggaaggactt ttacccttat
     5521 atgaaggtaa aatgatacat caatttgatg caaattttag ccaagctact tattttttag
     5581 aaaaggctaa atttgatgag cgtttaaaaa gtaaagaact ttatagagct aaaaaagcta
     5641 ctgggaaaga attaaatcct aaattaataa aatacgatag agaatttttt agactcggat
     5701 atagaaaaat tgcaagtgat acaaatgaga gaactttgat agcttcttta ttaccaaaaa
     5761 attgcggtgg agctgatagt acttatagta acattccaaa acaatatgtt ttaaaagatg
     5821 atgtaatttg catggatata gtgccttatg aaagaatttt atttgtttta gctttgttta
     5881 attctttagt ggttgatttt atcataagaa atatggtgca aatcaatgta agcaaatctt
     5941 atttagaaag aattcccctg cctcaaccaa gtgatgaaga aattcaaaac aatgaaattt
     6001 ataaaaccct cgctaaaaat gctttgcttt tacagcttta caatgataaa aatcatcatt
     6061 ttgatgagct aaaacaagaa tttaatataa aaaatgaaga aattccaaaa actaaaaaag
     6121 cttatgatat cttaagagca aaaaatgatt tattggttaa agaactttat ggtttaagtg
     6181 atgatgaatt ttcttacatg ataagcactt ttaaagtttt aaatgaaaag caaagtgaat
     6241 atacaacctt gctaaaaact atataaatga aagatttata tagtttttaa aatttaattt
     6301 ttaccgataa gttcttctgt gattctagcg atttctaatt cttcatctgt aggaataaca
     6361 agcactttaa gtttagaatt tgcatgattt atcattcttt cgcccgaaat cctttgtttg
     6421 ttaagttcaa aatctaactc gataccaaga tgagctaatc tctcgcatac tttttgtcga
     6481 accaaactat cattttctcc tataccacct gtaaaaataa tagcatcggt ttttggcaac
     6541 acagcaaagt aggatcctat atatttaaca agacgataac aaaacatatc aagagccaag
     6601 cgtgctttat cattaccttg ttctatctct ctttctatat ctctaaaatc attataaccg
     6661 caaattccat atactccact ttttttattc atcagtatat ctatttcttc tatagttaaa
     6721 cccttaagat gactaacaaa aggtaaaata gcagggtcta aatctccaca acgcgttccc
     6781 ataataagtc cttcaagtgg agtaaagccc atagaagtat ccatactctt acctttttct
     6841 atagcacata cacttgcacc atttccaaga tgagcagaga tgacatttaa ttcattttga
     6901 tctttttgaa gaaattttgc cgctctagaa ctaacataag catgagaagt cccatgaaaa
     6961 ccatatcttc taatattatg cttatcataa aaatcataag gcaaagcata catataagca
     7021 aaatcaggca tagtgcgatg aaaagctgta tcaaaaatag ctgcattagc aacactaggt
     7081 gcagctttga tcattgtttt tatacctgct aaatgggcag gattatgcaa aggagcaaaa
     7141 atactaaccc tatctatctc tttaagaaca taatcatcta ctaaacaatg ctcacttaaa
     7201 tttcttcccc cgtgaactat acgatgacca cagccatcaa gagcatttaa atctgctaaa
     7261 attcctgatt ctttaaaaag ctcgttgact atactaagtc cttcttcgtg attatttatt
     7321 gttaattctc tttcaaaact ttcgttattt aaagtatttt ttaatacaac ctttgaattt
     7381 tgctctccaa ttttttctac caatccactg gctttaacga ttttattatc aaaaaattta
     7441 aatttaatcg atgaagaacc tgaatttaaa actaaaattt tcatttatta ttcctttcta
     7501 ttgagcttgt atagcactta aaataacagt atctacaata tcatctacca aacatccacg
     7561 acttaaatca ttaacaggtt ttttaagacc ttgcaaaata ggaccgattg ctaaagcatt
     7621 agcagttctt tgaactgctt tgtaacaaat atttgctgcg ttaagatcag gaaaaatata
     7681 tacatttgca tggcctgcta tcttagaatt tggcattttc tttgctgcag tctttggatc
     7741 ataagcgcaa tcaaactgca taggaccatc tatatttaac tcagggtatt tttctttagc
     7801 aatctttaat gcttctttta caagatctac gctttcccct ttaccactat cgccactaga
     7861 ataagaaagc aaagctattc ttggttcaag tccaaaagat ttagcagtca tagcacttac
     7921 ataagcacta gttgcaagct gttcggcagt tggacttgga tttacagcac aatcagcaaa
     7981 agctaaaact tgatcttcaa gccccataaa gaaaattcct gaaacggaac taataccttc
     8041 tttggtttta ataagctgta atgctgggcg aatcgtttca gctgtagtag ttgatgctcc
     8101 actaaccata gcatcagctt ttccagtatg tataagcaaa gttccaaaat aagttttatc
     8161 ctgaactagc atcttagcct cttctaaact catgccttta gattttcttg cttcataaag
     8221 aatagaagta aattcttgat tatattctga attaagtgga ttcataattt gcatagcact
     8281 taaatcaaga cttaatctag tagcatcttg tttgattttt tcttcatcgc ccaataaaat
     8341 aagatcaaca actttacttt ttaataaaat ttcagcagct tttaaaattc tctcatcatt
     8401 actttctggc aaaacaacgg tttttttatt ttttatactt tgtttgatta attcatattt
     8461 aaaacgatga ggagttataa aatcatattc tttaagtttt tgcacttctt caaaattaaa
     8521 attttcatta atcaaaacat aattacgacc atctagagca tgatcaaaat atttttgagc
     8581 tataagttta tcttcatcgt taataatagc agcgataggg gtattaagat ttttagccaa
     8641 ttttatacta agatcaaatc catcaagtat tccaaattcg caaaaactat ttacaagcac
     8701 aaaatcgtat ttgcgtttta actcttcgta ttcttctaaa ataacattaa aaaaattatg
     8761 aggatctttg ctaaattcct ccattgcctc tctaaaggta aaaccataag cgctttttac
     8821 ggtttgattg atattaaatt cttccaacca accctgcaaa acaggaacgc gatgtatgta
     8881 tatcacaggg caataaattg cgatattttt gtaaattttg ctataatttt taagcaaatt
     8941 tgtactaata atagtattta actcatcact tctagatctc atcaaataaa gatttgccat
     9001 cattttctcc ttgaatttat aaatgtggaa cactctttgc tttttctaat tttaacaaag
     9061 aaaaataaaa attcatattt taaaggacga aaatgaaaaa agttttattt tatgtgttac
     9121 cgtttgcatt ttttggttgt tctgcaacgg ttgatccgca aatttcaatg aaaccacctg
     9181 cttatgtaga agaacttgca ccaaaacaaa gcaataatgt agaaagtgca ccaggatcgc
     9241 tttttggcaa aggggataat cctttatttt cagataaaaa agctatgaat gtaaatgatt
     9301 tagttacagt tgttatacaa gaaagtacca ctcaaagcac acaagctaat aaagcaacaa
     9361 gtagaactaa tacctcaaat ttaggcggag gtgctttaac aggaagttca ggagtggtag
     9421 ctaatgctct taataaagtc aatgcttatt ctaatatagg ctttcaaacc aatagttcaa
     9481 acaactacac aggaacaggc tcacaaagta gaaatgaaag tttcaatact acaatttcaa
     9541 cacgtgtaat taaaatttta tcaaatggta attattttat cgaaggttca agagagcttt
     9601 taatcaacgg agagaagcaa atcatacaat taagcggtgt tattcgtcct tatgacatcg
     9661 gtcaagacaa tactatagat agtaaatata tagcagatgc taaaattcta tataaaacag
     9721 aaggagaagt ggatagaagc acaagaaaac cttggggtag taaagttata gaagcgatat
     9781 ggccattcta aaagcaaggt taaaccttgc ttttaggctt ttattctttt acagccctac
     9841 ttttaacctc atcttcaact tcagctaaaa atctatctac aagttcactt tcttttaatt
     9901 tagctacaac ttcaccatgt cttatgacaa gtccttgatt tttcccaaag gctatagcca
     9961 catcagcgcc cttggcttcg cctaaagcat ttaccacaca acccatgaca ctgatgttta
    10021 aaggttcttt tatatgcttg gttttttcct ctacgatttt aatcgcactt aacaaatcac
    10081 tttgaatcct accgcaagtt ggacatgaaa taatatttac tccgcttttt tgtactccgc
    10141 tatcttgcaa aattgctctt gctacacgaa tttcttcttc aagctcaccc gtcatagaaa
    10201 cacgcatagt atcgcctata cctttaagaa gtaaatttcc taaagctata gaacttttta
    10261 cagtgctatg aaatttagtt cctgcttcag ttacccctaa gtgaaaagga taatcacaaa
    10321 gcggtcttaa tctctcataa gcttctatag ttttttgagc atctgaagtc ttcatggaaa
    10381 ttttaatatc aaaaaagtct aaatcctcta aaagcttgat attatacatc gcactttcta
    10441 gcatggcatc gacaccataa ccaaatttat cactaaattg tttttctatg gagccgtgat
    10501 ttacaccgat gcgtataggg ataccccgtt ctttacatgc ttttaccact tctttaatat
    10561 tttctttaga gcctatattg ccaggattta tacgcacgcc atcgataaat tcagcacaat
    10621 atacagccaa attatgatta aaatgaatat ctacgattaa aggtagagga cttttagctt
    10681 taatctcttt taaagccctt gcatcagcca tatccaagca cgccaaacgc actatgtttg
    10741 ctcctgcaaa ataaagacga ttgatttgtt ctaaagaacc ttttatatct cttgttttag
    10801 taaaaagcat agattgaact gaaatgggtg catcaccgcc tattaaaaca tttcctactt
    10861 tgatttgtct ggttttaaat cttttatact ccataacttc actctttgaa aaattttaat
    10921 atcaaatttt aactttttat tgctt
//
LOCUS       DBBXPZ010000057        10897 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.059, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000057 DBBXPZ010000000
VERSION     DBBXPZ010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10897)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10897)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10897
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.059"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..1068
                     /locus_tag="ACJFD7_001238"
     CDS             <1..1068
                     /locus_tag="ACJFD7_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5644 domain-containing protein"
                     /protein_id="HGG0860044.1"
                     /translation="KLELRIFRFDKTKDYEAYYKPYIYDNYENFASFYDLLLQVQDDD
                     IYFDFDKYEDTYMVVNKQIIPLFTPLEKIAKEFDFSLCIEPLSTKRAIKDLIIDKNDF
                     LDKYKYLEKFGDEEDKKLYAKYDYLYYASEILDYLPEYMGDGVFYLASKMIEKYPEKK
                     IEILKTLADKEKGIFYHLESKNEILETTIKNLQNEILNLGLFDKNILHFDLPKTNAFD
                     NEIKELKEIKHNFKDFNIAFYGFNACDTLKSKLKAKFISYENSIKNNGFSLLNLNPTL
                     SYKIAADIVLDAYDSGADFMVVKEEKDFYLFDTCAKKLMQTSGREFEDFYILSRFEFL
                     ALIEGIQAPSLKNHTLKVSLI"
     gene            1065..1448
                     /locus_tag="ACJFD7_001239"
     CDS             1065..1448
                     /locus_tag="ACJFD7_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860045.1"
                     /translation="MKISLECKDLIIEKTLELFLKDHLVMKKNCDFIISDEKIYTAKP
                     LFIISKNSPFLSIPFSKEALFESLNEFDNALKAAALQLALEQKRLLEEKIDAIALEFK
                     KDYENKIDLAIKDLKNKLVKALNDE"
     gene            1441..2124
                     /gene="rsmD"
                     /locus_tag="ACJFD7_001240"
     CDS             1441..2124
                     /gene="rsmD"
                     /locus_tag="ACJFD7_001240"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052913 - 16S rRNA
                     (guanine(966)-N(2))-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HGG0860046.1"
                     /translation="MNDEFISVKDFFNHNEKRKKFLQKQEIKPLKEKTKKTKETKLYT
                     NIESGKYKGKKLLLPSLTTTRSTKSIVKSCVFNVIREDLRSKIFIEAFGGSALMAAEA
                     LSNHALKAYAIELDVKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILYL
                     DPPFDTREGFSDIYEKIYHFLENLDLKTLNLIIFEHHSTIKTPEKIQNFQKVKEKKFG
                     STSLSFYAS"
     gene            2183..3229
                     /gene="flgI"
                     /locus_tag="ACJFD7_001241"
     CDS             2183..3229
                     /gene="flgI"
                     /locus_tag="ACJFD7_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HGG0860047.1"
                     /translation="MRVLTIFLLFMTSIFAVQIKDVANTVGVRDNQLIGYGLVVGLNG
                     SGDGTSSKFTLQSISNLLQGMNIKVDPNDIKSKNTAAVMVTAKLPAFAKSGDKLDITV
                     SSMGDAKSLQGGTLLLTALRGIDGEIYAIAQGSISTGGLTPRPGGAGSHSTAATVMGG
                     ANVEREIPQNFSQNNDLTLSLKVADFKTANDIERVLNTVFGEEVAKAIDSRTVKLKKP
                     EDLSNVDFMARVLEQDIAYKPQSKVIIDERTGTVIAGVDVEVEPVLITHKDITIKIDP
                     NNNAVANQNEIDMKDGGFVDPSSNTLRINNAKSTVANIARMLNKLGATPNDIIAIMEN
                     LKRAGAINADLEII"
     gene            3229..3570
                     /locus_tag="ACJFD7_001242"
     CDS             3229..3570
                     /locus_tag="ACJFD7_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860048.1"
                     /translation="MKVDNFLNTYSMNSALLDRAAKARSLESSIKINDNDIVTKSKED
                     EALKEQTDAFEAFFLKQVLDVSLKSQNSLFGKDASDEIYSSMYNDTMSKALSGGMGFS
                     KLLYDFLKERG"
     gene            3633..3830
                     /gene="flgM"
                     /locus_tag="ACJFD7_001243"
     CDS             3633..3830
                     /gene="flgM"
                     /locus_tag="ACJFD7_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HGG0860049.1"
                     /translation="MINPIQQSYVANTALNTNRIDKETKTNDTQKTENDKASKIAEQI
                     KNGTYKIDTKATTAAIADSLI"
     gene            3873..4307
                     /locus_tag="ACJFD7_001244"
     CDS             3873..4307
                     /locus_tag="ACJFD7_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HGG0860050.1"
                     /translation="MLKQRLDEVNAILAKLIALTEEDIENIKVAKHESVTPSVEEKNK
                     LIAEFITAKKQLDVALVELNNSSTKGLSELLDDEDKQKLDLLKKNLQNLHSKNKEYAK
                     FVLIVKDFLDGLVNKMFDINDGTNNAYGDKKTNPESIFKINV"
     gene            4317..6143
                     /gene="flgK"
                     /locus_tag="ACJFD7_001245"
     CDS             4317..6143
                     /gene="flgK"
                     /locus_tag="ACJFD7_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009424 - bacterial-type flagellum hook
                     [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HGG0860051.1"
                     /translation="MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQT
                     TNGYITTGGVQVGTGTAVESIVRLHDEYSYYKLKGASTQLEYTKYIASTLQEIAQRFP
                     DLQNTGILQDLENYNKAWNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKK
                     VNDDIKNTVDEINRIGEEIATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAV
                     ASKNEINQDNRLDTTITDPGHQYNLSIEGFSIVDGINFHPLKLDYDDKNKSYSIYYET
                     PDEKVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINET
                     NNLYASSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITID
                     VNTTMNDIMRQINANTDDNNNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVA
                     IEDKGTNFAGAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLSGVDSGNDMANKIIQ
                     LQYEKVNFYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQS
                     KSGVNTNEELAALIQYQSSYGAAAKIVSTVDQMLDTLLGLKS"
     gene            6160..6924
                     /locus_tag="ACJFD7_001246"
     CDS             6160..6924
                     /locus_tag="ACJFD7_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
                     /protein_id="HGG0860052.1"
                     /translation="MKNFIHLKAKLDFLANQKNTNHSLFETPDPLQIAKIHNDEFIAL
                     ICALFAYGNAKNIVNFLKKLDFSLLNLQEKQIKKELKNLKYRFQNEKDIQEIFITLSR
                     LKNEISLYELFYQAYQERENTTDAILAFMQKIKTLNSYSSYGYDFFFGKIWQNTPTSP
                     LKRYNMYLRWMVRKDELDLGLFTKIHTKDLLIPLDTHAHKISLTLGLLKRKIYDYKSV
                     LELTQNLKKLDANDPIKYDFALYRLGQSKEIDKFKE"
     gene            6928..7692
                     /locus_tag="ACJFD7_001247"
     CDS             6928..7692
                     /locus_tag="ACJFD7_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HGG0860053.1"
                     /translation="MGFEHLNTIYYFILFFVALFAGFIDSIVGGGGLITLPALIACGI
                     PAHLSLATNKLQSVFGSFTATLTYFKSTTLPHLAWGVFFTALGAAIGSYSVLFVKDEQ
                     LKLIILIFLTLTFLYTALRPNLGKHESEPKIKNIKIFHLICGLTLGFYDGFLGPGTGS
                     FWIFACVMLLGFNMRKASINTKILNFTSNIIALAIFLWQYELLWAVGLLMGVGQVLGA
                     YLGSKLVLKTNGKFIKTLFLIVVGATIIKVAWDYFS"
     gene            complement(7685..8866)
                     /locus_tag="ACJFD7_001248"
     CDS             complement(7685..8866)
                     /locus_tag="ACJFD7_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HGG0860054.1"
                     /translation="MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEI
                     QKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRELYLMHSCKIMKKILDNLILAQN
                     LNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
                     LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFV
                     IFIVMLILAYKNFHSFAFSCDFLFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISK
                     AFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSLVFSMLSVAMKSGRL
                     EVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNF
                     N"
     gene            complement(8863..10422)
                     /gene="ctsE"
                     /locus_tag="ACJFD7_001249"
     CDS             complement(8863..10422)
                     /gene="ctsE"
                     /locus_tag="ACJFD7_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspE/PulE family protein"
                     /protein_id="HGG0860055.1"
                     /translation="MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFNKLANFCNLH
                     FVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMIIRSKPCSLELLEQVKTFMICEK
                     IDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
                     LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRK
                     TQDGSFELDFENERYDFRVSCLPLIYGESVVIRILKHDKEILDLYKLNLGNKNLEILK
                     KILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDPIEYKIPLVQQILLN
                     SKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALST
                     IDRLLDMQAKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERC
                     HHSGFFGRELIAECLEINEDLSCAIRENQDKTILMELAKKYGFQTMFEQGLKKAKEGL
                     TSIDELLRVVR"
     gene            complement(10412..>10897)
                     /locus_tag="ACJFD7_001250"
     CDS             complement(10412..>10897)
                     /locus_tag="ACJFD7_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HGG0860056.1"
                     /translation="FCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKIS
                     REKLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDI
                     KAYQKTIFWALKANELDKQKQDSWLIFAQAKRALGEEKEAQSALDAYINYYGLMELDG
                     K"
BASE COUNT         4130 a         1685 c         1582 g         3500 t
ORIGIN      
        1 aaattagaat taagaatttt tagatttgat aaaaccaagg attatgaggc ttattataaa
       61 ccttatattt atgataatta tgaaaatttt gcaagttttt atgatttgct tttgcaagtt
      121 caagatgatg atatttattt tgattttgat aaatatgaag atacttacat ggttgtaaat
      181 aagcaaatca taccactttt tacaccttta gaaaaaatag caaaagaatt tgattttagt
      241 ctttgtatcg agcctttaag cacaaaaaga gccattaaag atcttatcat cgataaaaat
      301 gattttttag acaaatacaa atatcttgaa aaatttggtg atgaagagga taaaaaactt
      361 tatgcaaaat atgattattt atattatgca agtgaaattt tagactatct tcctgaatat
      421 atgggcgatg gagtgtttta tttggcttca aaaatgatag aaaaatatcc tgaaaaaaag
      481 atagaaattt taaaaactct agcagataaa gaaaagggta ttttttatca tcttgaaagc
      541 aaaaatgaaa ttttagaaac aacgatcaaa aacctacaaa atgaaatttt aaatttaggg
      601 ctttttgata aaaatatttt acactttgat ttacctaaaa ccaatgcttt tgataatgag
      661 atcaaagaac ttaaagaaat taaacataat tttaaagatt tcaatatagc tttttatggt
      721 tttaatgctt gcgatacttt aaaatccaaa cttaaggcta aatttatttc ctatgaaaac
      781 agtataaaaa ataatggctt tagcttgctt aatctaaatc ctacgctaag ctataaaata
      841 gccgcagata ttgttttgga cgcttatgat agcggggctg attttatggt agtaaaagaa
      901 gaaaaagatt tttatctttt tgatacttgt gctaaaaaac ttatgcaaac aagtggaagg
      961 gaatttgaag acttttatat tttgagccgt tttgagtttt tagcccttat cgaaggcata
     1021 caagctccat cattaaaaaa tcacacttta aaggttagtt tgatatgaaa atctctttag
     1081 aatgcaaaga tctcatcata gaaaaaactt tagaactttt tttaaaagat catttggtaa
     1141 tgaaaaaaaa ttgtgatttc atcattagcg atgaaaaaat ttataccgca aaacccttat
     1201 ttatcatctc taaaaactct ccatttttaa gcataccatt tagcaaagaa gccttgtttg
     1261 agtctttaaa tgaatttgat aatgccttaa aagcagcagc tttgcaactt gcacttgaac
     1321 aaaaaagact gcttgaagaa aaaattgacg ctattgcttt ggaatttaaa aaagattatg
     1381 aaaataaaat cgatcttgcc ataaaagatc ttaaaaacaa actcgtaaaa gcacttaatg
     1441 atgaatgatg aatttataag cgttaaagac ttttttaatc acaatgaaaa aagaaaaaaa
     1501 tttcttcaaa aacaagaaat taaacctctt aaagaaaaaa caaaaaaaac taaagaaaca
     1561 aagctttata caaatataga aagtggtaaa tacaaaggga aaaaactact tttacctagt
     1621 cttacaacaa caagaagtac taaaagcata gtcaaaagtt gtgtttttaa tgtaataaga
     1681 gaagatttaa gaagtaaaat tttcattgaa gcctttggag gaagtgcttt aatggcggct
     1741 gaagcactaa gtaatcatgc tttaaaagct tatgctatag aacttgatgt aaaagcttat
     1801 aaaattgctt tagaaaatgc taaaaatata gatccaaatt tagaagtgat ccatgcaaat
     1861 acttttgaaa ttttacctaa actcatagaa aattcaaaaa atgaaatcat cttatatctt
     1921 gacccacctt ttgataccag agaaggtttt agcgatattt atgaaaaaat ttatcatttt
     1981 ttagaaaatt tagatttaaa gactttaaat ttaatcattt ttgaacacca ctcaaccata
     2041 aaaactcccg aaaaaatcca aaattttcaa aaagtcaaag aaaagaaatt tggatcaact
     2101 agcttaagct tttacgcttc ttaacttact tggaacactt cttgcttgat ctatcatcaa
     2161 caatagatta aaggaagaat ccatgagagt tttaacgata tttttactct ttatgacaag
     2221 catttttgca gtgcaaatca aggatgtagc aaacactgta ggtgtaagag ataaccaact
     2281 tataggttat ggacttgttg tagggcttaa tggaagcggc gatggaacaa gctctaaatt
     2341 tacactacaa tccatctcaa accttttgca aggtatgaat atcaaagtag atcctaacga
     2401 tatcaaatca aaaaataccg cagctgttat ggttacagcc aaacttccag cctttgcaaa
     2461 aagcggagat aaacttgata ttaccgtttc atctatgggt gatgcaaaat ctttacaagg
     2521 cggaacactt ttactgactg cacttcgtgg gattgatggt gaaatttatg ccatagcaca
     2581 aggctctatc tcaacaggag gtttaacacc tagaccagga ggagcaggtt ctcactcaac
     2641 tgctgcaact gtaatgggcg gagctaatgt agaaagagaa attccacaaa attttagcca
     2701 aaacaatgat ctaaccttaa gtttaaaagt agcggatttt aaaaccgcaa acgatataga
     2761 aagagtttta aatactgtct ttggcgaaga agtagctaaa gccatcgact ctcgcacagt
     2821 aaaactcaaa aaacctgaag atctttcaaa tgttgatttt atggcaagag ttttagaaca
     2881 agatatagct tataaaccac aaagcaaagt tatcatcgat gaaagaacag gaacagtgat
     2941 tgctggagtt gatgtagagg tagaacctgt tttaatcact cataaagata tcactataaa
     3001 aatagatcca aacaataacg cagtagctaa tcaaaatgaa atcgatatga aagatggtgg
     3061 ttttgtagat ccaagttcaa ataccttaag aatcaacaat gcaaaaagca cagttgcaaa
     3121 tatagctaga atgcttaaca aacttggagc aaccccaaat gacattatcg ctattatgga
     3181 aaatttaaag cgcgcaggtg caattaacgc ggatttggag atcatctaat gaaagtggat
     3241 aattttttaa atacttatag tatgaatagc gctttacttg atcgtgcagc caaagcaaga
     3301 agtttagaat caagcatcaa aataaatgac aatgatatag ttacaaagag caaagaagat
     3361 gaagccttaa aagaacaaac ggatgctttt gaggcatttt ttttaaagca agttttagat
     3421 gtatctttaa aaagtcaaaa ttcactcttt ggaaaagatg ccagcgatga aatatactct
     3481 tccatgtata atgataccat gagtaaagct ttaagtggag gtatgggttt ttcaaaatta
     3541 ttatacgatt ttttaaaaga aaggggttaa gttttttaaa tttaggtcga tatggtttgt
     3601 agaggattat aactaagatc aaggaggcag aaatgatcaa tcctatacaa caaagttatg
     3661 tggcaaatac cgcattaaat acaaatagaa tagataaaga aactaaaaca aacgatactc
     3721 aaaaaacgga aaatgataaa gcgagtaaaa tcgcagagca gattaaaaat ggtacttata
     3781 aaatcgatac aaaagctacg actgctgcga ttgctgactc tttaatctaa aaactttcat
     3841 tctccttttt ttgagagaga aaaggagaaa atatgcttaa acaaagactt gatgaagtaa
     3901 atgctatctt agcaaaactt attgctttaa ccgaagaaga tatagaaaat atcaaagtgg
     3961 ctaaacatga gagtgtaacg ccaagtgtag aagaaaaaaa caaacttatc gcggaattta
     4021 ttacagctaa aaaacaactt gatgttgcct tggttgagct aaataatagc tctacaaaag
     4081 ggcttagtga actcttagat gatgaagata aacaaaaact agatctactt aaaaaaaatc
     4141 ttcaaaacct tcatagtaaa aacaaagagt atgctaaatt tgttcttatt gtcaaagatt
     4201 ttcttgatgg cttagtaaat aaaatgtttg atatcaatga tggaacaaat aatgcttatg
     4261 gagataaaaa gacaaatcca gagtcaattt tcaagatcaa tgtataagga tttataatgg
     4321 gtatttttgg aacattatac acaggtgtta caggcttaaa ggcaagcgaa gttcaaatcg
     4381 caacaactgg aaataatatc tcaaatgcta atgcaacttt ttatacacgc caaagagtgg
     4441 tgcaaactac aaatggatat attacaacag gtggagttca agtaggcaca ggaactgctg
     4501 tagaaagtat agtgcgtttg catgatgagt attcttacta taaattaaaa ggtgcatcta
     4561 ctcaactaga atatactaaa tatatagctt ccactttaca agaaattgcg cagcgttttc
     4621 ccgacttaca aaatactgga attttgcaag atttagaaaa ttataacaaa gcttggaatg
     4681 attttgcatc taaccccaac gaaaatgcca caaaaatagc ccttgtaaaa gcttctcaga
     4741 ccttaacaga aagcgttaat aacacttttg caaccttaga taaaatccaa aaaaaagtaa
     4801 atgatgatat taaaaataca gttgatgaga ttaatagaat tggcgaagaa attgctacta
     4861 taaataaaca aatttatgga caagaagcct taccaacaga acacgcaaat gaacttaggg
     4921 atagaagaga tgaacttgag cttactcttt caaagctagt tagtgcagtt gcaagcaaaa
     4981 atgaaatcaa tcaagacaat cgccttgata caaccatcac tgatccagga catcaataca
     5041 atctaagtat agaaggtttt agtatagtag atggaataaa ttttcatcct ttaaagcttg
     5101 attatgatga taaaaataaa tcttatagca tttattatga aactcctgat gaaaaagttc
     5161 gcgatcttac tgcaaaaatt agcggtggac agcttggtgc tcaacttgac ttacgcggta
     5221 gaaactatag caaaagcgaa ggaaaatatg aagatggaat tatccaaggt tatatggatt
     5281 ctttagatac ttttgctaag accatgatca atgaaactaa caatctttat gcaagttctg
     5341 cgaaaagttc tgttacttct gattatctat ctgggcttaa gggagatatt cctttagtta
     5401 attacgacag aaccatacaa ccaggaagtt ttgatatagt catttatgat gataaaggcg
     5461 ataaaaaact caccaaaacc atcaccatag atgtaaatac aaccatgaat gatatcatgc
     5521 gtcaaatcaa tgctaataca gatgataata acaataaaaa ttcaaacgat gatgttgatg
     5581 atcatatcaa tgcaagtttt agctacgatg caaaaactgg agatggttta tttcaaatca
     5641 atgcaaaatc aggttttaag gtagccattg aagataaggg cacaaatttc gcaggtgcgt
     5701 ttagtatagg tggttttttc agcggaactg atgcaagtaa tatgaaagta aaagattcca
     5761 tcttaaatga tccaagcaca gtaagagcaa gtttaagtgg ggttgatagt ggcaatgaca
     5821 tggcaaataa aatcatccaa cttcaatatg aaaaagttaa tttttataat gaagatggca
     5881 ctatcgataa tcttaccatg gaagaatatt accgcaaact tacaggtaaa atagcctcag
     5941 atggtgaaaa taacaatgtc gtcaattcaa gcaatgaaac tctttataat tctgtttata
     6001 gcgagtacca atctaaaagt ggcgtaaata caaatgaaga attagccgct cttatacaat
     6061 atcaatcaag ttacggtgca gcagcaaaaa tcgtctcaac cgtagatcaa atgcttgata
     6121 ccttactagg gcttaaatct taagctctag taatatcaaa tgaaaaattt tatccatctt
     6181 aaagctaagc tcgatttttt agccaatcaa aaaaatacca atcattccct ttttgaaact
     6241 ccagatcctt tgcaaattgc taaaattcac aatgatgaat ttattgcctt aatttgtgct
     6301 ttatttgcct atggaaatgc taaaaatata gtaaattttc taaagaaact tgatttttct
     6361 ttattaaacc ttcaagaaaa acaaataaaa aaagaactta aaaatttaaa ataccgcttc
     6421 caaaatgaaa aagatataca agaaattttt atcactcttt caaggctgaa aaatgaaatt
     6481 tcactctacg aactttttta tcaagcctat caagaaagag aaaataccac agatgccatc
     6541 ttagctttta tgcaaaaaat caaaacctta aattcatatt caagttatgg atatgatttt
     6601 ttctttggaa aaatttggca aaacactcct acttcacctc ttaaacgcta taatatgtat
     6661 ctaagatgga tggttagaaa agatgaactt gatcttggac tttttaccaa aattcacacc
     6721 aaagatcttt taattccact tgatacacat gcacataaaa tttccttgac tttaggactt
     6781 ctaaagcgta aaatatatga ttataaaagt gttttagaac tcacacaaaa tttaaaaaaa
     6841 ttagatgcaa atgatcccat aaaatatgac tttgcactct atcgtttagg gcaaagtaag
     6901 gaaattgaca aatttaagga gtgaagaatg ggttttgagc acttaaatac gatttattat
     6961 ttcatacttt tttttgtagc tctttttgct ggttttatag attctattgt aggtggagga
     7021 gggcttatta ctctaccagc actcatagcc tgtggaattc ctgcgcattt atccttagca
     7081 acaaacaaac tccaaagcgt ctttggttct tttacggcta ctttaactta ttttaaatcc
     7141 accactctac ctcatcttgc ttggggtgtt tttttcacag ccttaggagc agctatagga
     7201 agttatagtg ttctttttgt aaaagatgag caattaaagc ttattatctt aatcttttta
     7261 actcttacct tcttatatac agccttacgt cccaacttag gcaaacacga aagcgaacct
     7321 aaaataaaaa atatcaaaat ttttcattta atttgtggct taactttagg attttatgat
     7381 ggatttttag ggcctggaac gggttcattt tggatttttg cttgtgtgat gctactaggt
     7441 tttaatatga gaaaagcgag cattaatact aaaattttaa atttcacaag caacatcatt
     7501 gctcttgcta tatttttatg gcaatatgaa cttttatggg ctgtaggttt gcttatgggt
     7561 gtaggacaag ttttaggagc ttatttgggt tcaaaacttg tgttaaaaac taatggaaag
     7621 tttataaaaa ctttattttt aatcgttgta ggagctacta ttattaaagt agcttgggat
     7681 tattttagtt aaaattgacc cctgagctaa gctcccacat aggtaaaaat atacctaaag
     7741 ccaaaaacaa aactaaaagc gctacaaata aagtcatcat aggctctaaa aaaatcaaaa
     7801 atctatccat caaattttcg cttttttgtt gataatattt ggcaatttct tcacttaata
     7861 cttcaagtct tccacttttc atcgcaacac taagcataga aaacaccaaa gaatcaaaaa
     7921 tatcaatctt tttaaaagcc tgacttaact caagaccaga atctataaaa ctaaaaagtt
     7981 ttttatactg aaaaattaaa aatttatttt caagccctat aatagctaaa tcaaaagctt
     8041 tagatattga aattccattt tttaaaagca aagaaaaaac cataaaaaaa taataatttt
     8101 gattataaat aatcaaacga gaaatcaaag gtacttttaa aaataaaaaa tcgcaagaaa
     8161 aagcaaaaga atgaaaattt ttataagcta aaataagcat aacaataaaa ataacaaaca
     8221 aaaatatgca aaaaattcca tagtcatcta aaaaattata aatttctaac attacatgtg
     8281 tgataaaagg caaactcgcg cctaaatttt caaataaatc tttaaaatta ggcactacaa
     8341 aaagcattaa aaacaaaaat gctccgataa tacttaaaaa aaccaaagta ggatatctaa
     8401 aagccttttt taattgtttt tgactctcta agcttttttc tcgaagttta gaaatttgac
     8461 taaacacttc actgattttt cctgtctttt cagccgtttt aatcaaagct aactccgcac
     8521 gatttaatcc aaaattagca ttttcaaaag cttgatttag attttgggct aaaattaaat
     8581 tgtctaatat ttttttcata atcttgcaag agtgcataag atataattct ctaatcgctt
     8641 cttgaacact taatccaact tcacacaaca aagctagctc tttaaaaaag agtataaaat
     8701 tttcatcttt taatctctga aaattagatt tttgaatttc ttttatatca atgattttcc
     8761 aattctttga taaggctttt gcttgtgctg tatttaaatt ttcagctttt atagtttttg
     8821 tataattttg attgttttta agaaattcca cttcataaaa tttcatctta caacccttaa
     8881 aagctcatct atacttgtaa gaccttcttt ggcttttttt aaaccttgtt caaacatagt
     8941 ttgaaagcca tatttttttg caagctccat taaaatcgtt ttatcttgat tttccctaat
     9001 tgcacaagat aaatcttcat tgatctctaa gcactcagcg attaattctc tgccaaaaaa
     9061 tccactatga tgacaacgct cacatccttt tggttcaaaa aattcacctt caaattcaat
     9121 ataatgtttt ttgctttttt gcttacacca aggacaaagt tttctaacca aacgctgtgc
     9181 tataacaaga ctcaaagccg atgctatcaa gtaacttttt gcttgcatat ccaaaagcct
     9241 atcaatggta ctaagagcat cattagtatg caaggtgctt aaaagcaaat gacctgttaa
     9301 agaagcttta agtgcaatat ctaaactttc ttcatcgcga atttctccta tcatgataat
     9361 atcaggatct tgccttaaaa ttgctcttaa aacactatta aactcgactc caacttttga
     9421 attgagcaaa atttgctgca ctaaaggaat tttatattct ataggatctt ctgcggaaat
     9481 aatctttttt tcaatacttt tcaactcatt taaacacgcg tataaagttg tgcttttacc
     9541 actacctgta ggaccggtta ataaaatcat tccattggga cgatgtaaaa tcttttttaa
     9601 aatttctaaa tttttatttc caagatttag tttatacaaa tccaaaattt ctttatcatg
     9661 ttttaaaatt cttataacaa cactttcgcc ataaatcaaa ggcaaacatg aaacacgaaa
     9721 atcatatctt tcattttcaa aatctaattc aaaacttcca tcttgtgttt ttcttgattc
     9781 agctaaattc aaacaagcta aaaatttgac atgaaaaacc aaagcttcat aaatatcctt
     9841 ctcaaaaata gcaaattcac gcaaaattcc atcaacccta aacctaatca aagcatcatc
     9901 atttcttgcc tctatatgaa tatcactcgc atgaaaagat aaaatttcat gtaataaaaa
     9961 atcaaaaatt tgactgatgc aactttgatc atctcttttg tgattttctt gccattcaag
    10021 tctaagctta atgcttaatc ttttaatctc ctcttgaatg cgaatttgat ttaaaatttt
    10081 agctatcttt aattcatcgg caattgcagt gtcgattttt tcacaaatca taaaagtctt
    10141 aacttgctct aaaagctcta aagaacaagg tttggatcta ataatcataa agccgtcatt
    10201 gtttttaata agcagaaatt taaattttaa aagtaaagaa aaaggtatac cttcataaat
    10261 aaaatcatta tcttcatcta aatcaacaaa atgcaaatta caaaaatttg ctaatttgtt
    10321 aaaaaaatcc caagaagtga tattaaattt agtgcaaatt tcatcaagac ttatttcatt
    10381 atcaatataa gcttgaaaaa ttttatccat tctactttcc atctaattcc attaaaccat
    10441 aataatttat ataagcatct aaagcacttt gagcttcttt ttcttcgcct aaagctcttt
    10501 tagcctgagc aaaaatcagc caagaatctt gtttttgctt gtcaagttca ttggctttta
    10561 aagcccaaaa tattgtcttt tgataagctt taatatcaaa atacttctta gctaaattta
    10621 atgccttttc atagcttgga ttttgataaa aagatttttt taaatcagaa atatttaaaa
    10681 ttttagaatc aatttctatc ttgctaatat gtgtattttc ctgtaccgct ttaacttctt
    10741 ctagttcttt atataacttt tccctagaaa tcttattttt ttcttgtaaa atttgcgctt
    10801 gaagaatctt ttgctccaaa tgctttttat gttcaatagc ctgcaaataa atattttttt
    10861 gcttattata tttttgcatt agcacaaaaa aacaaaa
//
LOCUS       DBBXPZ010000058        10810 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.060, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000058 DBBXPZ010000000
VERSION     DBBXPZ010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10810)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10810)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10810
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.060"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..1296
                     /locus_tag="ACJFD7_001251"
     CDS             <1..1296
                     /locus_tag="ACJFD7_001251"
                     /inference="COORDINATES: protein motif:HMM:NF024700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP/GTP-binding protein"
                     /protein_id="HGG0860057.1"
                     /translation="RKMLIEFRVENFLSIQDEQVLSMVASSDNTFLTSHTNNDKKLKL
                     LKSSVLYGANASGKSNIIKALAIMKKIVISSANGQRGDKLPIIPFLLGNEDNKSTKFE
                     IIFIQNDTKYQYGFILNSEKILEEWLLVFGESNRAQKWFERIYNEKEEKYNYSFGAKF
                     LGSKQLWENSTRDNALFLSVAIQLNNEQLKPVFDFFLKYIRVTCTDSWNDGQEVTIDI
                     LRQDKQKIISYLKRADLDIEDIVVEETELNKTNLMQENIPQKIKQMMQTDLEKGARLK
                     KTDIKTIHTNQQGKQILFDMLELESQGTQKFFKLIGPWVEALEQGYTIVVDELNTHLH
                     PLMTKFLVNLFHNEDLNKSNAQLIFTTHDTSILNQDVFRRDQIWFCEKQNKATKLYPL
                     SDFKVRKDKTNLENDYLLGRFGALPYFKEILSSWSDNGN"
     gene            1286..1924
                     /locus_tag="ACJFD7_001252"
     CDS             1286..1924
                     /locus_tag="ACJFD7_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RloB family protein"
                     /protein_id="HGG0860058.1"
                     /translation="MGTDDLHKKRNTKTRDRKTRKNEYEAILIVCEGEKTEINYLKQL
                     KNFFRLNNITIDIIPSENSSPLQVVKFAKKKNDLFDYNEVYCVFDKDTHANFIKAQEE
                     CEKYIKEYIKEDKNFKFEAITSNPCFEFWILLHFTCTTKPFGTNSPCNELINKDLKKY
                     IKDYTKNYNFANIIKQNLSTAITNAQKINKEDKASYTDMDKLALKFQKLSKK"
     gene            2141..2743
                     /locus_tag="ACJFD7_001253"
     CDS             2141..2743
                     /locus_tag="ACJFD7_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002892938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6037 family protein"
                     /protein_id="HGG0860059.1"
                     /translation="MIQMTNLKNLYKDIKNKQMTYCIFNYTHNRIELEIMFDINPEPF
                     KLLIIKKHSNKTLLLDILNGFKLDIFLSKEKYQILLDILDIKGGGTIPFSTKKFFEEL
                     NSAIPHQVMQYNLSNNLRYIISQVNNLDEANLVYIKCLIDWSKKENNKHVTEKNRKKT
                     KYLYPDIFEIIKDKNISVVYTNNKDYSKHTNIEDIEVING"
     gene            2748..3518
                     /locus_tag="ACJFD7_001254"
     CDS             2748..3518
                     /locus_tag="ACJFD7_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002892941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860060.1"
                     /translation="MNNNILTYKIDTEQPIDIKELAESLIAIQNMYRKSIISNEASIK
                     ISEVRKGSYEFDIVVLGLGLSLPYIENFNSAIEFIKNLKDCYKFFKENKFGNNVDKIN
                     IDDAKNTNKIIQPIISIGGNSTVIIQNGYSDPSECFSVVSKEAVEVQKNIYSYIENKE
                     RKTKEELQTYKYFQNILVEFTQTRTDDKRGNKLLCKNIYSKELNVEFSSDYLKKQILE
                     EHNPHLHLYNVDLQVVYENNVPKIYKIISIKDIKNKNI"
     gene            3533..4741
                     /locus_tag="ACJFD7_001255"
     CDS             3533..4741
                     /locus_tag="ACJFD7_001255"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HGG0860061.1"
                     /translation="MTNLPQGWKMETLGEILSSDKYSIKRGPFGSALKKSFFVEKGIR
                     IFEQYNPINNDPHWKRYFISHEKFQELEAFKATEGDLLISCSGTLGKIVELPKDTEMG
                     IINQALLKIRLNNIKILNSYFIYYFNSPIMQEKILESTLGSTIKNIASVKILKQIEIP
                     LPPLKKQERIVGILDESFAKIDESIKILEQNLLNLDELMQSALQKAFNPLKDNAKENY
                     KLPQSWEWKSLEEISENISAGGDKPKNCTESKTAKNQIPVYANGVNNNGLVGYTDKAT
                     IIKPSLTISARGTIGFVCIRKEPYFPIVRLISLIPCENILCLHYLYFCLNFFIAKGEG
                     SSIPQLTIPKFKSLQIPLPPLKEQEQIAKHLDFVFEKTKALKELYTKELKDYEELKQS
                     LLNKAFKGKL"
     gene            4861..5931
                     /locus_tag="ACJFD7_001256"
     CDS             4861..5931
                     /locus_tag="ACJFD7_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HGG0860062.1"
                     /translation="MKEFIPQKLPLNIELNANIYSLIIKASRKLAELNGLSKSIPNPS
                     ILINALILQEAKDSSEIENIITTHDELFLSRVDENKLTRAAKEVKDYESALKKGYELL
                     KKEQLLKNAHILEIQKRLERNNAGFRKQSGTMLKNPITGEIKHIPPQNPNNIQELMGN
                     LELYINDDSLDEFDFLVKMAIIHYQFESIHPFYDGNGRTGRIINILYLVYKGLLDFPI
                     LYLSAYIVKNKDEYYKLLQKVRDEGDILKWIEYILKGIEQTAVKTIETIIKIEKMMSN
                     VGEILQNKTNFYSKDFVELLFSHPYTKIDFLIKKLDISRQSASKYLKICENLGILECI
                     KMGRSNYYINIELLRLFRKGIF"
     gene            5932..7416
                     /locus_tag="ACJFD7_001257"
     CDS             5932..7416
                     /locus_tag="ACJFD7_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HGG0860063.1"
                     /translation="MQNKIDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNL
                     KDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKN
                     FKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISFNKEDEVFALGEVYEK
                     LLKDMGSDGGNSGEFYTPRPLIKTMVEVIDPKPKERIYDPSCGSCGFLVESFLHILYK
                     DRTKGEKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHEISSPNIIKTNTLSK
                     KITDITEKDKYEVILANPPFGGKEKEQIQENFPIKSNATELLFLQHILKSLKNNGRCA
                     IIVPEGVLFQNSNAFMSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKC
                     ICEGDGVYYYELIPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY
                     DLSAKNPNVKEEKILRTSEEILNSLEENLKTQQEYLNELKSILK"
     gene            complement(7480..8244)
                     /locus_tag="ACJFD7_001258"
     CDS             complement(7480..8244)
                     /locus_tag="ACJFD7_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HGG0860064.1"
                     /translation="MQLRQKAREIFEKLLGAKKDQLFASDKEYFINHINFTFDESFIK
                     ANLDTQKYFLITLASTLAVGGKIEFKALLQGAIKNDISPIVIKEVIYQATPYVGFARV
                     CDFLSLCNKVFKKLNIALVLTPQGTTTQENRKIKGREMQNAIFGEANITKMIESTPED
                     KTFINDFLSANCFGDYYTRTGLDLKTRELLTLVYLISLGGLDNQVKAHIQGNLNMGQS
                     RKDLLNIIAALIPYIGYPKALNALNLLDDIKVECKQ"
     gene            complement(8351..8770)
                     /locus_tag="ACJFD7_001259"
     CDS             complement(8351..8770)
                     /locus_tag="ACJFD7_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HGG0860065.1"
                     /translation="MQELEKAGIHGSFKGDSKFFSKNVKVSMMFKSNEWRNFSGALVE
                     FEASARSAWHTHPQGQTLIVTEGEIITKVPGQKAFIAKKGDVISCPIGVKHFHGATNT
                     SSGAHIALTGEKEGKNVEWLELVSDEEYENALKEARE"
     gene            complement(8828..9703)
                     /locus_tag="ACJFD7_001260"
     CDS             complement(8828..9703)
                     /locus_tag="ACJFD7_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0860066.1"
                     /translation="MKNLNKASNAQIILVFCLGVFGILSTELGMMGIIPIVSQNFSVS
                     ISDAGWCVSIFALVITFCAPIVPLLCANFNPKKLMLICLAVFILSSLTSAFVGEFWQL
                     LILRYSLLWIRVLCVICINAGIWGFYSYFSDFLHSVGKMNFTLISIVLAIYGFSNIIG
                     NYIAGKTLVKNANFTLILTPLIMIGFYILLFSFYSEIILIIFAFILGILAGVMNNGTH
                     FMISYPFPKAANFSNGLFISVANIGLSTGTAICGLVISLSDTRYIIVNTIVLLILGII
                     MIFVRSRIEKMKLRF"
     gene            complement(9879..9974)
                     /locus_tag="ACJFD7_001261"
                     /pseudo
     CDS             complement(9879..9974)
                     /locus_tag="ACJFD7_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344926.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
     gene            10078..10389
                     /locus_tag="ACJFD7_001262"
     CDS             10078..10389
                     /locus_tag="ACJFD7_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArsR/SmtB family transcription factor"
                     /protein_id="HGG0860067.1"
                     /translation="MQKFLTIISAINDESRILILHHLLRYKELCVCDLQELLNMGQSR
                     LSRHLKILKDAGFLYVRHQGTWAYYGINNELLKLHLDLFENIKILELKNAIKKNTQIC
                     P"
     gene            complement(10397..10810)
                     /locus_tag="ACJFD7_001263"
                     /pseudo
     CDS             complement(10397..10810)
                     /locus_tag="ACJFD7_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344932.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
BASE COUNT         4279 a         1387 c         1579 g         3565 t
ORIGIN      
        1 agaaaaatgt taatagaatt tagagtggaa aattttttat ctatacaaga tgagcaagtt
       61 ttaagtatgg ttgcaagtag tgataatact tttttaactt ctcataccaa taacgataaa
      121 aagttaaaat tattaaaaag cagtgtactt tatggagcaa atgcttctgg gaaatcaaat
      181 atcattaaag ctttagcaat tatgaaaaag attgttattt caagtgcaaa tgggcaaaga
      241 ggagataaat tacccataat acctttttta ttaggcaatg aagataataa gtctacaaaa
      301 tttgaaatta tttttataca aaatgacaca aagtatcaat atggctttat tttaaattct
      361 gaaaaaattt tagaagaatg gcttttagtt tttggcgaaa gcaatagagc gcaaaagtgg
      421 tttgaaagaa tttacaatga aaaagaagaa aaatataatt attcttttgg agctaaattt
      481 ctaggttcta aacaactatg ggaaaatagc actagagata atgccttgtt tttatctgtg
      541 gctattcaat taaataatga gcaattaaaa cctgtatttg atttttttct aaaatatatt
      601 agagtaactt gtacggatag ttggaatgat ggacaagaag taacgattga tattttacga
      661 caagataaac aaaaaattat atcttatcta aaacgagctg atttagatat tgaagatatt
      721 gttgttgaag aaacagaatt aaataaaaca aacttaatgc aagaaaatat tccacaaaaa
      781 attaaacaaa tgatgcaaac tgatttagaa aaaggtgcaa gattaaaaaa aacagatata
      841 aaaacaatac atacaaatca gcaaggcaaa caaatattat ttgatatgtt ggagttagaa
      901 tcgcaaggaa cgcaaaaatt ttttaaattg attggacctt gggtagaagc tttagaacaa
      961 ggatacacta ttgtagttga tgagctaaat actcacctac atcctttgat gacaaaattt
     1021 ttagtaaatc tttttcataa tgaagattta aacaaatcaa atgctcagct tatttttacc
     1081 actcacgata cttctatttt aaatcaagat gtatttagaa gagatcaaat ttggttttgt
     1141 gaaaagcaaa ataaagcaac caaactttat cctttgagtg attttaaagt aagaaaagat
     1201 aaaacaaatt tagaaaatga ttatctttta gggcgttttg gagctttgcc ttattttaaa
     1261 gaaatattat catcttggag tgataatggg aactgatgat ttgcacaaaa aaagaaatac
     1321 aaaaacaaga gatagaaaaa caagaaaaaa cgaatatgaa gctatactta tagtatgcga
     1381 aggtgaaaaa acagagatta attatctaaa acaattaaaa aattttttta gattgaataa
     1441 cataacaata gatattattc caagcgagaa ctcaagtcct ttacaagtgg ttaaatttgc
     1501 caaaaagaaa aatgatctat ttgattataa tgaggtgtat tgtgtatttg acaaagatac
     1561 acacgcaaat ttcataaagg cacaagaaga atgtgaaaaa tatataaaag aatatataaa
     1621 agaagataag aattttaaat ttgaagcaat tacctcaaat ccttgttttg aattttggat
     1681 acttttgcat tttacatgca ccacaaaacc atttggtaca aatagccctt gtaatgaatt
     1741 aattaataag gatttaaaaa aatatataaa agattatacc aaaaattata attttgcaaa
     1801 tattataaag caaaatctta gtacagctat tacaaatgct caaaaaataa ataaagaaga
     1861 taaagcttca tataccgata tggataaact tgcacttaaa tttcaaaaat taagtaaaaa
     1921 ataacgacac tataataaat ttaatacaaa ggagatatgg aatattaata aaaatttact
     1981 agatagataa aagattttga cgagggcttg gctcctttga tagagcttag ctctttaggc
     2041 aatgtaagag aattagctga tgaatttggt ggcttagaaa ttctaaaaca aagctttgat
     2101 gatttacaaa gggagattta tttaaattaa aggagaaaaa atgatacaaa tgacaaattt
     2161 aaaaaattta tacaaagata taaaaaataa gcagatgact tattgcatat ttaattatac
     2221 acacaataga attgaattag aaataatgtt tgatataaac ccagagccat ttaaattgct
     2281 tataattaaa aagcattcta ataaaacttt attgttagat attttaaatg gttttaagtt
     2341 agatatattt ctttcaaaag aaaaatatca gatattatta gatatattag atataaaagg
     2401 tggtggcacg attcctttta gcacaaagaa gttttttgaa gaattaaata gtgcaattcc
     2461 acaccaagtt atgcaatata atttgagtaa taatttaaga tacataattt cacaagttaa
     2521 taatcttgat gaagctaatt tggtgtatat taagtgttta atagattgga gtaaaaaaga
     2581 gaataataaa catgtaacag aaaaaaatag aaaaaaaaca aaatatttat atcctgatat
     2641 ttttgaaatt ataaaagata aaaatataag tgttgtttat acaaataata aagattattc
     2701 caaacatacc aatatagaag atattgaagt aataaatgga tagtattatg aataacaata
     2761 ttttaactta caaaatagat actgaacagc ctatcgatat caaagagtta gctgaaagtt
     2821 taatagccat acaaaatatg tataggaaaa gtattattag taatgaggct tctataaaga
     2881 ttagtgaagt tagaaaaggt agttatgaat ttgatattgt tgttttaggt ttagggttat
     2941 ctttgcctta tatagaaaat tttaattcag cgattgaatt tattaaaaat ttaaaagatt
     3001 gttacaagtt ttttaaagag aataaatttg gtaataatgt tgataaaatt aatattgatg
     3061 atgcaaagaa tactaataaa ataatacaac caattataag tataggtggt aattctactg
     3121 ttattattca aaatggttat agtgatccat ctgaatgctt tagtgttgta agcaaagaag
     3181 cagtagaagt tcaaaaaaac atttatagtt atattgaaaa taaagaaaga aaaactaaag
     3241 aagaattaca aacatataaa tattttcaaa atatacttgt tgaatttaca caaacaagaa
     3301 ccgatgataa acgcgggaat aaactattat gtaaaaatat ttatagtaaa gaattaaatg
     3361 ttgaattttc tagcgattat ttaaaaaaac aaattctaga agagcacaat ccacatttac
     3421 acttatacaa tgttgattta caagttgttt atgaaaataa tgtgccaaaa atttacaaaa
     3481 ttatttctat taaagatatc aaaaataaaa atatttaagg ttataaaata caatgacaaa
     3541 tttaccgcag ggttggaaaa tggaaacact tggtgaaata ttatcaagtg ataaatactc
     3601 tataaaaaga gggccatttg gaagtgcttt aaaaaaaagc ttttttgtag aaaagggtat
     3661 tagaattttt gaacaatata atcctataaa caatgatcca cattggaaaa gatattttat
     3721 ttcgcatgaa aaatttcaag aattagaagc gtttaaggca acagaaggcg acctactaat
     3781 tagctgttct ggaactttgg gaaaaatagt agaattaccc aaagatacag aaatggggat
     3841 tataaatcaa gcacttttaa aaataaggct taataatata aaaatcttaa atagctattt
     3901 tatttattat tttaattctc caataatgca agagaaaatt ttagaatcca ccttaggttc
     3961 aacaatcaaa aatatagcta gtgtaaaaat tcttaaacaa atcgaaattc cgttaccgcc
     4021 gctcaaaaag caagaaagga tagtgggaat tttagatgag agttttgcaa agatagatga
     4081 gagtataaaa atcttagaac agaatttgct aaatttagat gagttaatgc aaagcgcctt
     4141 gcaaaaagct ttcaatccat taaaagacaa tgctaaagaa aactataaac tcccacaatc
     4201 ttgggaatgg aaaagcttag aagagattag cgaaaatatt tctgcgggtg gagataagcc
     4261 aaaaaactgc acagaaagta aaactgccaa aaatcaaatc cctgtttatg caaatggtgt
     4321 aaataataat ggtttagttg gatatacaga taaagctacc attataaaac cttctttaac
     4381 tatatctgct agaggaacaa taggttttgt ttgcattaga aaagaacctt attttcctat
     4441 tgtaaggctt atttctttaa ttccttgtga aaatatatta tgcttacatt atttatattt
     4501 ttgtttgaat ttttttatag caaaaggtga aggttctagt attccgcaac ttactatacc
     4561 aaaatttaaa tccctacaaa tccccttacc cccactcaaa gagcaagagc aaatcgcaaa
     4621 gcatttagat tttgtctttg aaaagacaaa ggctttaaaa gagctttaca ctaaagaact
     4681 aaaagattat gaagagctta agcaatcctt gcttaataaa gcttttaagg gaaaattata
     4741 atgttaaaaa atttgccaaa ttttaacaca ttggcttaat atgttaaaaa tttttgattt
     4801 ttttaacata tttttttata atgttaaaat ttttagaaaa aattaacata ttggaaaatt
     4861 atgaaagaat ttatacctca aaaattgcct ttaaatatag aattaaatgc aaatatttat
     4921 agtcttatca ttaaagcttc tagaaaatta gcagagttaa atggacttag taaaagcata
     4981 ccaaatccaa gtattttaat caatgctttg attttgcaag aagcaaaaga ttcgagtgag
     5041 atagaaaata tcatcacaac acatgatgaa ctttttttat cacgagttga tgaaaacaaa
     5101 ctcacaagag cagcaaaaga agtgaaagat tatgaaagtg ctttgaaaaa aggatatgag
     5161 ttattaaaaa aagaacagtt attaaaaaat gcacatattt tagaaattca aaaaagatta
     5221 gaaagaaata atgcaggttt tagaaaacaa agtggaacta tgcttaaaaa tcctattaca
     5281 ggagaaatca aacacatacc accccaaaat cctaataata tacaagaact tatgggaaat
     5341 ttagaactat acattaacga tgatagttta gatgaatttg attttttggt aaagatggca
     5401 attatacatt atcaatttga aagcattcat cctttttatg atggcaatgg cagaacgggt
     5461 aggattataa atatacttta tttagtatat aaaggacttt tggattttcc tattttatat
     5521 cttagtgctt atatagtaaa aaataaagat gagtattata agcttttgca aaaagtgcgt
     5581 gatgaagggg atattttaaa gtggatagaa tacatactta aaggcataga gcaaaccgct
     5641 gtaaaaacta ttgaaactat tattaagata gaaaaaatga tgtctaatgt aggtgaaatt
     5701 ttacaaaata aaacgaattt ttatagtaaa gattttgtgg agcttttgtt ttctcatcct
     5761 tatacaaaga tagatttttt aataaaaaaa ttagacattt caagacaaag tgcttcaaaa
     5821 tatcttaaaa tttgtgaaaa tttaggaata ttagagtgta ttaaaatggg tagaagtaat
     5881 tattatataa atatagaact tttaagactt tttagaaaag gaatttttta aatgcaaaat
     5941 aaaatcgata aaatcacaga tattctaaga agagatgatg gcataagtgg tgctatgcac
     6001 tatacagagc agattggctg gatacttttt ttaaaatttt tagatgatta tgagacaaat
     6061 ttaaaagatt tagcgttttt agatggcaaa gattataaaa gcattttgca agaaaaattt
     6121 agctggagtg tttgggcagc gcctaaaaaa gatggcaaac ttgatgtaaa aaatgcttta
     6181 agtggatcgg atttgcttga attcgtaaat aaagagcttt ttccttatct taaaaatttt
     6241 aaaaataatg atgattttaa aagtatagag tataaaatcg gtggaatttt tgaatttata
     6301 gacaatcgca tagcaaatgg acatacttta agagaagtga taaatatcat tgatgagatt
     6361 agttttaata aagaagatga agtatttgcc ttaggtgaag tttatgaaaa acttctaaaa
     6421 gatatgggta gcgatggtgg aaatagtgga gaattttaca cccctcgtcc tttgataaag
     6481 actatggtgg aagtaataga tcctaaacca aaagaaagaa tttatgatcc ttcttgtggt
     6541 agttgtggat ttttagttga gagtttttta catattttat ataaagacag aaccaaaggc
     6601 gaaaaagcaa atttaagcgt agaagagctt gaatttttaa aaaatgatgc tctttttggt
     6661 aaagaaaaaa ctccgcttag ctatgcaatg ggcgttatga atatgatatt acatgaaatt
     6721 tcaagtccaa atatcataaa aacaaacact ttaagtaaaa aaattacaga tataacagaa
     6781 aaagataaat acgaagtaat acttgcaaat ccaccttttg gaggtaaaga aaaagaacaa
     6841 attcaagaaa attttcctat aaaatcaaac gctactgaac ttttgttttt acaacacatt
     6901 ttaaaatctt taaaaaacaa cggaagatgt gcgatcatcg tgcctgaagg tgtgcttttt
     6961 caaaattcaa atgcctttat gagtgtaaaa aaagatttac tagatgattt taatttagaa
     7021 tgcgttttga gtttgccaag tggggtattt ttgccttata gtgctgttaa gactaatgtg
     7081 ctttttttct ctaaaggtaa aaaatgtatt tgcgaaggcg atggagttta ttactacgaa
     7141 cttataccgc cttataaact tactaaaaat aagcctttag aatacgcaca ttttaaagaa
     7201 tttctaaaat gctacaaaga aagaaaaatc actgctaatt cttggcttgt tagcaaaaaa
     7261 gagcttgaag aaagaaacta tgatctaagt gctaaaaatc caaatgtaaa agaagaaaaa
     7321 atcctaagaa ctagcgaaga gattttaaat tctttagaag aaaatctaaa aacacaacaa
     7381 gaatatctaa atgagcttaa aagcatacta aaatgattgc aagttttttg ataaaaacta
     7441 atttacaaat aacttctaag ctcaatttac aataaatatt tattgcttgc attctacttt
     7501 tatatcatca agcaaattta aggcatttaa agcctttgga taaccgatat atggaataag
     7561 agctgcaatg atatttagca aatcttttct actttgtccc atgttaagat tgccttgtat
     7621 gtgagctttt acttgattgt ctagcccacc aagtgagata agatatacaa gggttaaaag
     7681 ctccctagtt tttagatcaa gtcctgtgcg tgtatagtag tctccaaaac aattcgcact
     7741 caaaaaatca tttataaaag ttttatcttc tggggtagat tctatcattt tagtgatatt
     7801 ggcttcacca aaaatagcat tttgcatttc cctgcctttt attttgcgat tttcttgcgt
     7861 agtagtacct tgtggagtta aaactaaggc gatatttagt tttttaaaca ctttattgca
     7921 aaggcttaaa aaatcacata ctctagcaaa acccacataa ggcgtagctt gataaatcac
     7981 ttctttaatg acaataggac ttatatcgtt cttgattgca ccttgaagta aagctttaaa
     8041 ctctattttt ccacctactg ctaaagtaga agcaagagtg attaaaaaat atttttgtgt
     8101 atccaaattt gcttttataa agctctcatc aaaagtaaaa tttatatgat tgataaaata
     8161 ctctttatca cttgcaaaaa gttgatcctt ttttgctcct aagagttttt caaaaatttc
     8221 tcttgctttt tgtcttaatt gcatggtttt atcctttgtg gtttttaaaa tttgtgaaaa
     8281 aagagcattt aaaatactcc aaaaacataa aagtttttat aaaattttcg tgttttattt
     8341 acaaatttct ttactctctt gcttctttta aggcattttc atattcttca tcgcttacaa
     8401 gctcaagcca ttctacattt ttaccttctt tttcgcctgt aagtgctatg tgtgctccac
     8461 tacttgtatt agttgcacca tgaaaatgct ttactcctat aggacagctt atcacatcgc
     8521 cttttttagc tataaaggct ttttggcctg gaacttttgt gatgatttcg ccctctgtta
     8581 cgattaaggt ttgtccttga ggatgagtat gccacgcact tctagcactg gcttcaaatt
     8641 caaccaaagc cccgctaaaa tttctccact catttgattt aaacatcata gaaactttta
     8701 catttttgct aaaaaattta ctatcacctt taaaacttcc atgaattcct gctttttcta
     8761 attcttgcat tttacctcct tttttagtat tataaaacat gagagctact ctaagtcaag
     8821 taaaaattta aaatcttaat ttcatttttt ctatcctact tcttacaaaa atcatgataa
     8881 ttcctaaaat caacaaaaca atagtattta cgataatata acgcgtatca ctcaaagaaa
     8941 tcacaagtcc acaaatagca gttccagtgc ttaatcctat attggccacg cttataaaaa
     9001 gtccattgct aaaattagca gcctttggaa agggataact tatcataaaa tgcgtgccgt
     9061 tattcatcac acctgctaaa attcctaata taaaggcaaa tattataagt ataatttcac
     9121 tataaaaact aaaaagtaaa atataaaatc ctatcataat taaaggtgtt aaaatcaaag
     9181 taaaatttgc gtttttaaca agggtctttc cggctatata attgcctata atatttgaaa
     9241 aaccataaat agccaataca atactaatta aagtaaaatt catctttcct acactatgta
     9301 agaaatcaga aaaataagag taaaaacccc aaattccagc atttatacaa ataacacaaa
     9361 gtactctaat ccataaaagc gagtatctta aaataagcaa ttgccaaaat tcacccacaa
     9421 aagcggaagt taacgagctt aagataaaca cagctaaaca aataagcata agttttttag
     9481 gattgaaatt tgcacaaagc agcgggacaa taggggcgca aaaagttatc acgagtgcaa
     9541 aaatactcac acaccaaccc gcatctgaaa tacttacact gaaattttga gaaacaatag
     9601 gaattatacc catcatccct agttctgtgc tcaaaatccc aaatacccct aaacaaaata
     9661 ctagaataat ttgagcattt gaagctttat ttaaattttt cattttatcc tttcaattaa
     9721 tatttttaaa agtataaaag atgagagtag gtctaagtca ataacctaaa ataaaaatat
     9781 ttatctatat taaataaaat ctttagaaaa atctaaaact tcaaaataag catttaaaag
     9841 aaataaaaga tgccttaaaa gcataaggca tcttttattt ataggcttat tactccaatg
     9901 cgtgtgtttt catagcaaga attaagcact atgtctatca tagcactagc ataatcacta
     9961 tagctgattt tactcaaaca aatgtttaaa ataaaatttt tatttttatt tgttatgatt
    10021 attttaggcg tggctatatc ttttggaatt tttattaatt taatttaagg aaataaaatg
    10081 caaaaatttt taaccattat ttcagcaatc aatgatgaaa gtaggatttt gattttgcat
    10141 catcttttaa gatataaaga actttgtgtt tgtgatctac aagagctctt aaacatgggt
    10201 caatcaagac tttcaagaca tttaaaaatt ttaaaagatg cgggtttttt gtatgtaagg
    10261 catcaaggaa cttgggcgta ttatgggatt aataatgagc ttttaaagct gcatttagat
    10321 ctttttgaaa atatcaaaat tttagagctt aaaaatgcta ttaaaaaaaa tacccaaatt
    10381 tgcccttaat ataaaatcaa cccttaaact tatgcaattt atcacaaggt tgatagtcct
    10441 tgctttctag attaaaccca tcgacttcat ttgcaagcat ttcttcataa atttttatct
    10501 ttttgcttaa aactttttca ctttctttta atgttttaat ctggttttgt aattttttct
    10561 ttgtttgctt taacatctct tgtctctctt tggcagtttt tatacccaaa gagcaaagtt
    10621 ttatgtaatg cctgatttgt tcgatttgca tacctaaaat tcgaaaccat tctatccatt
    10681 ttgcccattc tatatcgctt tttgaaaaat atttcacact attttcatct ttttgaacaa
    10741 aaggaaacaa acctttttag cccaaaatct taaagtatga gcactaattt ttgtttcttt
    10801 ttctacctct
//
LOCUS       DBBXPZ010000059        10792 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.061, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000059 DBBXPZ010000000
VERSION     DBBXPZ010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10792)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10792)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10792
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.061"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            50..745
                     /locus_tag="ACJFD7_001264"
     CDS             50..745
                     /locus_tag="ACJFD7_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HGG0860068.1"
                     /translation="MTQEELDALMNGDVDLDSETEAEVKTEESNTEEDALMLEDVKIA
                     DYKPNPSVVWPPPPPNQEHKVVHQLDDVTKDSELKATEMMDKLESINNFFADSESLLK
                     EINKAIEKNIDIFSKLSEKFPNVESFSEALELNNQAKKSSKEIVGNLQSGQDEVMMAM
                     DAMQYQDIHRQKIERVINVMRALSRYMSSLFEGKIDDKKRVSSAVHIEGDSTADVVSN
                     DDIEALIASLGQK"
     gene            742..1995
                     /locus_tag="ACJFD7_001265"
     CDS             742..1995
                     /locus_tag="ACJFD7_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase U32 family protein"
                     /protein_id="HGG0860069.1"
                     /translation="MIIPEIVAPAGNFTKLKIALAYGADAVYAGVNNFSLRSRTAREF
                     NYESFEEAIKYTHKCGKKIYVTLNGFHLSSQIEGLKRHILKLREMKPDAFIVASVGAM
                     RLVKELAPEISLHVSTQANILNYLDAQVYKDMGAKRVVIARELGLKDAKALKENCDIE
                     LEAFVHGSMCFAYSGRCLISSVQSGRMSNRGSCANDCRFNYELYAKNPENGTLFRLEE
                     DENGTHVFNSKDLNLCSYIEKIMQENCISAFKIEGRTKSEYYVALTTRTYKMAIQDAL
                     ESKFESSKYEKEITTLKNRGFTDGYLVSRPLEKTDTQNHNTSIEEGSHQVHAISEDGS
                     FFKCKGKIVLNTPYEILAPLGDVIQTCDNELGKIYQKEDKYFIEFKKLIAKNNKEFSE
                     IHSGNEHEIQLPNKISALSFLRKEI"
     gene            1996..2490
                     /gene="purE"
                     /locus_tag="ACJFD7_001266"
     CDS             1996..2490
                     /gene="purE"
                     /locus_tag="ACJFD7_001266"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HGG0860070.1"
                     /translation="MNFVSILMGSKSDYETMKEAAKTLESFGVKYELIISSAHRSPKR
                     TKEYIANAEEKGVKVFIAAAGMAAHLAGAVAAYTTKPVLGVPMSGSNLASMDSLFSTV
                     QMPSGIPVGTLAIGKAGAINAAYLAMQILAIYDVDLAQKLKEDRLEKEKKLVSDSKEV
                     EVLL"
     gene            2500..3036
                     /locus_tag="ACJFD7_001267"
     CDS             2500..3036
                     /locus_tag="ACJFD7_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3972 domain-containing protein"
                     /protein_id="HGG0860071.1"
                     /translation="MQTYLELEEFCKLVHLNEDVVKGMMANGALNFKEEEGKIYIEAH
                     QGTFSVVPGSAKSQTTMVNSMTLAGESFVEKTIGTILNLHEKVLDAKDETLEALKNEN
                     KFLKDALYSMQELYDEDRKTIETLNNELKHAREEIEFLKRKYKLMWSKTAEIFGAKTE
                     PDLEMNKNLEKPIENMEQ"
     gene            3048..3911
                     /gene="glyQ"
                     /locus_tag="ACJFD7_001268"
     CDS             3048..3911
                     /gene="glyQ"
                     /locus_tag="ACJFD7_001268"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HGG0860072.1"
                     /translation="MTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLG
                     KKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFD
                     LKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYG
                     LERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDVKILNEQFE
                     NSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCA
                     EIYKKNLNEAE"
     gene            3898..4623
                     /locus_tag="ACJFD7_001269"
     CDS             3898..4623
                     /locus_tag="ACJFD7_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051540 - metal cluster binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HGG0860073.1"
                     /translation="MKLSEIYNFLDQLSPFDIQESWDNSGILLGDRDSEISTVYLSLD
                     IDENIIKEASENSLIITHHPLIFKGLKDLYDKTYPRAFIKEMIYKNISLISMHTNYDL
                     SHLNTYFTEEILGFKISFKDEFLIYVENSMSFEALCDWVKKKLNLQILRVSDCGKKDI
                     KRIAICTGSGGDLISKVDADCFLSGDFKYHQALEALSNQISLIDLGHFESERYFSQCL
                     AKDLKNLPLQVIITVSKNPFQYF"
     gene            4633..5349
                     /locus_tag="ACJFD7_001270"
     CDS             4633..5349
                     /locus_tag="ACJFD7_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HGG0860074.1"
                     /translation="MNKYLEQLVLLSKIDQEIDSYEPKIDSINKTLKDAELKIEKINA
                     DLEKIDEEIKDIENQKIQNNAHISEFSAKIKDLSKKSGAVKTEKEANALKIEEDIAKE
                     QLDAANDEIVRLDKILENKETYKKELEEEKIKQEQNINEIRVSIKSEMEVLEKDRMSV
                     YDKKTKLVSEMNQKVLSFYEKIRKWAKNTAVVPVKKQACYGCFMKIYDKTYLSVVKGE
                     EIVTCPHCGRILYKEQEEQN"
     gene            5346..6503
                     /gene="waaA"
                     /locus_tag="ACJFD7_001271"
     CDS             5346..6503
                     /gene="waaA"
                     /locus_tag="ACJFD7_001271"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HGG0860075.1"
                     /translation="MIFFYYFLTWTAFLFCAVFILLLSFLKSKYKISLKSRFFLYKNL
                     HQEKADVHFHACSYGEVRSIKALVLKFDSRITTITQTGFECAKEFCKKVNYLAFENFL
                     PFWFNPCKVLVIFEAEYWLMLVFMARIYKAKIILLNARISDKSYHSYQRFSFFYKKIF
                     SYIDEVFAQSELDKVRLESLGAKNVKIFKNIKANLEIKNNKIYTKPKEKLIIFASTHK
                     DEEELLLDHFKLEENEKLIIAPRHPERFKEVENLLLNKGLEFEKFSSLKDENKKFSKK
                     ILLLDALGELVNFYAISDVVVLGGSFIEGIGGHNPIEAAYFDNVLISGKFIHNQKVLF
                     EEVENVYFCEKLKDLNDKIHYLNLKAKISKKENLDLIIQTIQKGIDARKSL"
     gene            6484..7236
                     /locus_tag="ACJFD7_001272"
     CDS             6484..7236
                     /locus_tag="ACJFD7_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HGG0860076.1"
                     /translation="MQEKAYKLLALQEKISNREAKDLIDKGCVFSHGKKVVVARALMS
                     DKARFNVIKAKNPQIIFEDDKIIAINKPYAYVSEDLEKKFNTKLLNRLDKETSGVILL
                     CKDEDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEVEVNEPIFTIKVKGGALSKVSKDG
                     LSALSIITPIMMQSKKTLAKIVIQTGRTHQIRVHAKFIKHGVVGDEKYAKISSDRMYL
                     HSYEIKIFNYHFRANLDSGFAKFGFDIKNLDF"
     gene            7304..8641
                     /gene="ffh"
                     /locus_tag="ACJFD7_001273"
     CDS             7304..8641
                     /gene="ffh"
                     /locus_tag="ACJFD7_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048501 - signal recognition particle,
                     plasma membrane targeting [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005048 - signal sequence binding
                     [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HGG0860077.1"
                     /translation="MFELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHK
                     VTKELLTLIEEDVKQNGIGQKQFLNAIKINLENILSVNGKNQGFVFTSKPPTVVLMAG
                     LQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEK
                     DPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMDELRAVKDVLNPDEIFYVADAM
                     SGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADL
                     EVFIPDRIVSRIMGEGDLATLAEKTAAIIDEKEAKKLNQKIKKGEFNFNDFLNQMESI
                     KKLGSMKSLIGMIPGLSGMANVVKDIDLDNSKEIIRIKAMISSMTPKERENPDLLNNA
                     RKRRIAEGAGLSQVEVNRFLKQFSNAAKLAKRFSGKKGMESLTQMMSQARRQF"
     gene            8706..8933
                     /gene="rpsP"
                     /locus_tag="ACJFD7_001274"
     CDS             8706..8933
                     /gene="rpsP"
                     /locus_tag="ACJFD7_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HGG0860078.1"
                     /translation="MTVIRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVE
                     PEVIKVDAERLAYWKSVGAKLSDKVASITSK"
     gene            8936..9178
                     /locus_tag="ACJFD7_001275"
     CDS             8936..9178
                     /locus_tag="ACJFD7_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HGG0860079.1"
                     /translation="MVENFLREYAKLIADYPEQIDTQKIELSENFFEIVLFAHKVDTG
                     KLIGKNGKMINAIKTVISAYKSKDASSYRVTVKALE"
     gene            9171..9710
                     /gene="rimM"
                     /locus_tag="ACJFD7_001276"
     CDS             9171..9710
                     /gene="rimM"
                     /locus_tag="ACJFD7_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344130.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HGG0860080.1"
                     /translation="MSEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKGATFFIKN
                     TKEMLKIKHYNANNSTVLFENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFD
                     ILECEVFEEDKRLGKVVDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLDKFVKNID
                     IEKRQIFCTQDAFLILENS"
     gene            9707..10411
                     /gene="trmD"
                     /locus_tag="ACJFD7_001277"
     CDS             9707..10411
                     /gene="trmD"
                     /locus_tag="ACJFD7_001277"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HGG0860081.1"
                     /translation="MKFSFVSLFPNLMEFYFQDSILARAKEKKLFKLNFYNPRDFSKN
                     SYHKVDDYKIGGGAGLLMQAEPMYEVLRSIQEKKENPYFIFLNPSGKTFNQKDAKRLS
                     KKEHIVFVCGRYEGIDERVLEIFANEVFSIGDFILTGGELPALVMCDAILRNVNGVLG
                     NMESLEEESFENNLLEAPAFSKPFIFEKKNKKFYTPSEFLKGNHARIAGLKTTLASCK
                     TKFFRPDLFLEHERKK"
     gene            10422..10778
                     /gene="rplS"
                     /locus_tag="ACJFD7_001278"
     CDS             10422..10778
                     /gene="rplS"
                     /locus_tag="ACJFD7_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HGG0860082.1"
                     /translation="MKNKYIEQFEAKQIEGKNVPDFRAGDTLKLAIRIKEGDKTRIQN
                     FEGICIARRGNGVSETFIVRKIGANNVGVERIFPIYSESLESITVLRRGRVRRARLFY
                     LRDRRGKAARIKELKK"
BASE COUNT         4025 a         1199 c         2049 g         3519 t
ORIGIN      
        1 tataattttg agcaattatt gaaaatctag atttaaaaaa gggaaaaaaa tgactcaaga
       61 agagcttgat gctttgatga atggtgatgt tgatcttgat tcagagacag aagcagaggt
      121 aaaaaccgaa gaatcgaata ccgaagaaga tgctttgatg ttagaagatg tcaaaatagc
      181 tgattacaaa cctaatccta gcgtggtatg gccaccaccc ccaccaaatc aggagcataa
      241 agttgtacat cagttagatg atgttacaaa agatagcgag cttaaagcaa cggaaatgat
      301 ggataagctt gaaagtatta ataatttttt tgcggattct gaaagtttac tcaaagagat
      361 aaataaagca atagaaaaaa atattgatat tttttctaaa cttagtgaaa aatttcctaa
      421 tgtggaaagt ttcagtgaag ctttagaatt aaacaatcaa gctaaaaaaa gttctaagga
      481 gattgtcgga aatcttcaaa gcggacaaga tgaagtgatg atggcaatgg atgcaatgca
      541 gtatcaagat atacatcgtc aaaaaatcga acgtgttatt aatgtaatgc gtgctttaag
      601 ccgttatatg agttccttat ttgaaggtaa aattgatgat aaaaaacgtg taagttctgc
      661 agtgcatatt gaaggtgata gtactgctga tgttgtaagt aatgatgata tagaagcttt
      721 aattgcaagt ttagggcaaa aatgatcatt cctgaaatag tagctcctgc aggaaatttc
      781 acaaaattaa aaattgcttt agcttatggc gcagatgcgg tttatgcggg tgtgaataat
      841 ttttctttaa gatcacgcac tgcaagagaa tttaattatg aaagttttga agaagctatt
      901 aaatataccc ataagtgtgg taagaaaatt tatgttactt taaatggttt tcatttaagc
      961 tcccaaattg aaggtttaaa aagacatatt ttaaaattgc gtgagatgaa acctgatgct
     1021 tttattgtag cttctgttgg agctatgcgt cttgttaaag aacttgcacc tgaaatttct
     1081 ttacatgttt ctactcaggc aaatatttta aattatttag atgctcaagt ttataaggat
     1141 atgggtgcta aaagggttgt aattgccaga gaattagggc ttaaagacgc taaagcttta
     1201 aaggaaaatt gcgatattga acttgaagct tttgtgcatg gttctatgtg ttttgcttat
     1261 tcagggcgtt gtttaataag ctctgtgcaa agtggaagaa tgagcaatcg tggatcttgt
     1321 gcaaatgact gtagatttaa ttatgagctt tatgctaaaa atccagaaaa tggcacttta
     1381 tttcgcttag aagaagatga aaatggtact catgtgttta attctaagga tttaaatctt
     1441 tgttcttata tagaaaaaat catgcaagaa aattgtatca gtgcttttaa aatagaaggg
     1501 cgtactaaaa gcgaatatta tgttgcgctt acaacaagga cttataaaat ggccatacaa
     1561 gatgctttag agagtaaatt tgagtcaagt aagtatgaaa aagagattac tacacttaaa
     1621 aatcgtggtt ttacagatgg ttatcttgtt tcgcgtcctt tagaaaaaac cgacacgcaa
     1681 aatcataata caagcataga agaaggttct catcaagtgc atgctataag cgaagatgga
     1741 agctttttta aatgtaaagg gaaaatcgtt ttaaacacgc cttatgaaat tttagcccct
     1801 ttaggcgatg tgattcaaac ttgcgataat gaactaggta aaatttatca aaaagaggat
     1861 aaatatttta tagagtttaa aaaactcatt gctaaaaaca ataaggaatt tagcgaaatt
     1921 catagtggca atgaacatga aatccaatta ccaaataaaa tcagtgcatt aagtttttta
     1981 agaaaggaaa tatagatgaa ttttgtttct attttaatgg gaagcaagag tgattatgag
     2041 actatgaaag aggctgctaa aactttagaa agttttgggg taaagtatga acttattatc
     2101 tcatcagctc atcgtagtcc aaaaagaaca aaagagtata ttgcaaatgc tgaagaaaaa
     2161 ggtgtgaaag tttttatagc agcagctgga atggcagcgc atttagctgg agctgttgca
     2221 gcttatacaa caaaacctgt tttgggagtg cctatgtcag gaagcaatct tgcaagtatg
     2281 gattctttgt tttctacagt gcaaatgcct agtggaattc ctgtaggaac tttagctatt
     2341 ggtaaggctg gagcaatcaa tgctgcttat ttggctatgc aaattttagc tatttatgat
     2401 gttgatttag cacaaaagct taaagaagat cgtcttgaaa aagaaaaaaa acttgtatct
     2461 gattcaaaag aagtagaagt tttattataa gggataaaaa tgcaaaccta tcttgaactt
     2521 gaagaatttt gtaaacttgt gcatttaaat gaagatgtgg ttaaaggtat gatggctaat
     2581 ggggctttaa attttaaaga agaagagggt aaaatttaca tcgaagctca tcaaggtact
     2641 tttagtgtag tacctggttc tgcaaaatct caaactacaa tggtaaattc aatgacttta
     2701 gcaggggaaa gttttgttga aaaaacaata ggaactattt taaatttaca tgaaaaagtt
     2761 ttagatgcta aagatgaaac acttgaagca ttaaaaaatg agaataaatt tttaaaagat
     2821 gctctttatt ctatgcaaga actttatgat gaagatagaa aaactataga aaccttaaac
     2881 aatgagctaa aacatgcgcg tgaagagata gaatttctca agcgtaaata taaattaatg
     2941 tggagtaaaa ctgcagaaat ttttggagct aagacagagc ctgatttgga aatgaataaa
     3001 aatttagaaa aacctattga aaatatggaa caataaagag agatacaatg actttttcac
     3061 aaatgatact taatttacaa aattattggc aagagcaagg ttgtgcgatt atgcaacctt
     3121 atgatatgcc agcaggtgca ggaacctttc atccagcaac ttttttaaga agtttaggaa
     3181 aaaaaccttg ggcagctgct tatgtggctc caagtagaag gcctactgat ggacgttatg
     3241 gtgaaaatcc taatcgctta ggtgcttatt atcaatttca agttttgatt aaacctagtc
     3301 ctgataatat ccaagaatta tatcttaaaa gtcttgaaaa tttgggtttt gatttaaaaa
     3361 gtcatgatat tcgttttgtt gaagataatt gggagagtcc aagtttgggt gcttggggtt
     3421 taggctggga agtatggctt gatggtatgg aagttactca atttacttat tttcagcaag
     3481 ttggcggtat agcagtagat ttagtaagtg ctgaaattac ctatggtctt gaaagaatag
     3541 ccatgtatct tcaaaatgtt gataatgttt atgatatagt ttggagtgaa tttaatggag
     3601 aaaaaattaa atacgcagat gtgcataagc aaagtgaata tgaatttagt aaatacaatt
     3661 ttgaagtaag tgatgttaaa atcttaaatg agcagtttga aaattcttac aaagaatgta
     3721 aaaatatttt agaacaagga ctagctttac ctgcttatga ttattgtatg cttgctgcac
     3781 atacttttaa tcttttagat gcaagaggag caatttctgt agcacaaaga caagattata
     3841 tgttaaaaat tcgtgaactt tcaaaaaatt gtgctgaaat ttataagaaa aatttaaatg
     3901 aagctgagtg aaatttataa ttttttagat caattaagtc cctttgatat ccaagaatca
     3961 tgggataata gtggaatttt gcttggagat agggatagtg aaatttcaac tgtttattta
     4021 agcttagata ttgatgaaaa tatcattaaa gaagcgagtg aaaattcttt aattatcaca
     4081 caccatcctt tgatatttaa aggtttaaaa gatttatatg acaagactta tcctagggct
     4141 tttatcaaag aaatgattta taaaaatatt tctttaatca gtatgcatac aaattacgat
     4201 ttaagtcatt taaatactta ttttacggaa gaaattttag gttttaaaat ttcttttaaa
     4261 gatgaatttt taatttatgt ggaaaattct atgtcttttg aagctttgtg tgactgggtg
     4321 aaaaaaaagt taaatttgca aattttacgt gtaagtgatt gtggcaaaaa agacattaag
     4381 cgcattgcta tatgtactgg aagtggcggg gatttaattt ctaaagtaga tgcggattgt
     4441 tttttaagtg gagattttaa atatcatcaa gctttagagg cgcttagtaa tcaaatcagt
     4501 cttattgatt tgggtcattt tgaaagtgag agatattttt ctcaatgtct agcaaaagac
     4561 ttgaaaaatt tgccgctaca agttataata acagtttcaa aaaatccatt tcaatatttt
     4621 taaggaaaat aaatgaataa atatctcgaa caattagtgc ttttatcaaa aatagatcaa
     4681 gaaattgata gttatgaacc aaaaatagac agtattaata agactttaaa agatgctgag
     4741 ttaaaaatag aaaaaatcaa cgcagattta gaaaaaatcg atgaagaaat caaagatata
     4801 gaaaatcaaa aaatacaaaa taatgctcat atttccgagt tttcagcaaa aattaaagat
     4861 ctttctaaaa aaagtggtgc ggtaaaaaca gaaaaagaag ctaatgcttt aaaaattgaa
     4921 gaagatattg caaaagaaca attagacgct gcaaatgatg agattgtaag actagataaa
     4981 attttagaga ataaagaaac ttataaaaaa gaacttgaag aagaaaaaat caaacaagag
     5041 caaaatatta acgagattag agtaagcatt aaatctgaaa tggaagttct tgaaaaagat
     5101 agaatgagtg tttatgataa aaaaactaaa cttgtgagtg agatgaatca aaaagtttta
     5161 agtttttatg agaaaattcg caaatgggcg aagaatactg ctgtagttcc tgttaaaaaa
     5221 caagcatgct atggatgttt tatgaaaatt tacgataaga cttatctgtc cgttgtaaaa
     5281 ggtgaagaga ttgtaacttg tcctcattgc ggaagaattc tttataaaga gcaagaagaa
     5341 caaaattgat ctttttttat tattttttaa cttggacggc atttttattt tgtgccgtct
     5401 ttattctttt gctttctttt ttaaaatcca aatacaaaat tagtttaaaa tctcgatttt
     5461 ttctttataa aaatttacat caagaaaaag ctgatgtaca ttttcatgct tgttcttacg
     5521 gggaggtaag aagtattaaa gctttggttt tgaaatttga ttcaagaata actactatta
     5581 ctcaaacagg ttttgaatgt gcaaaagaat tttgtaaaaa ggtaaattat cttgcttttg
     5641 aaaatttttt gcctttttgg tttaatcctt gtaaggtttt ggtaattttt gaagcagaat
     5701 attggcttat gcttgttttt atggcacgta tttataaggc taagattatt ttgcttaatg
     5761 cgagaatatc tgataaatct tatcattctt atcaaagatt ttcttttttt tataaaaaaa
     5821 ttttttctta tattgatgaa gtttttgctc aaagtgaatt agataaagta agacttgaaa
     5881 gtttgggagc taaaaatgtt aaaattttta aaaatattaa ggcaaattta gaaattaaaa
     5941 ataataaaat ttataccaaa cctaaggaaa aacttatcat ttttgccagt actcataagg
     6001 atgaagaaga gcttttgctt gatcatttta aactagaaga aaatgaaaaa ctcattatcg
     6061 ccccacgaca ccctgaacgt tttaaagaag ttgaaaattt gcttttaaac aaaggtttag
     6121 aatttgaaaa atttagttct ttaaaagatg aaaataagaa attttctaaa aaaattttgc
     6181 ttttagatgc tttaggggag cttgtaaatt tttatgcaat ttctgatgtt gttgtgcttg
     6241 gaggttcttt catagaaggc ataggaggac acaatcctat agaagcggca tattttgata
     6301 atgtattaat cagcgggaaa tttattcaca atcaaaaggt tttgtttgaa gaagtggaaa
     6361 atgtatattt ttgtgaaaaa ttaaaagatt taaatgataa aattcattat ttaaatttaa
     6421 aagctaaaat ttccaaaaaa gaaaatttag atcttatcat acaaactata caaaagggaa
     6481 ttgatgcaag aaaaagctta taaactctta gctttgcaag aaaaaatttc aaatcgtgaa
     6541 gctaaagatt tgattgataa gggttgtgtt ttttcacatg gaaaaaaagt tgtggttgct
     6601 agagctttga tgagcgataa ggcaagattt aatgtgataa aagctaaaaa tcctcaaatt
     6661 atttttgaag atgataagat tattgctatt aataaacctt atgcttatgt gagtgaagat
     6721 ttagagaaaa aatttaatac caagctttta aatcgtttag acaaagaaac aagtggtgtg
     6781 attttgcttt gtaaagatga agattttaga aagctttgta tagaagaatt taaaaaacac
     6841 agggtttata aaagttatat tgcggtttta gatggggttt tggctgaaga ggttgaagtg
     6901 aatgaaccta tttttactat aaaagtaaaa ggcggggcgt taagtaaagt ttcaaaagat
     6961 ggtttaagtg ctttaagtat cattactcct atcatgatgc agtcaaaaaa aaccttagca
     7021 aaaatagtta ttcaaacagg tagaactcat caaatcagag tgcatgctaa atttataaaa
     7081 catggcgttg taggtgatga aaaatatgct aaaatttcaa gcgatagaat gtatttgcat
     7141 agctatgaaa ttaaaatttt taattatcat tttagggcta atttagatag tggttttgca
     7201 aaatttggct ttgatataaa aaatttagat ttttaaagcc atttaagaaa aaattttgta
     7261 taatgcaagg tttaatttaa aaattttata gaaaggtgat aaagtgtttg agttagtcag
     7321 cgaatctttt aaatcagcga ttaataaatt acgttttgtt gatgatgaaa aagcacttaa
     7381 gaacgcttta gaaaccttaa aaaaagctct tttaaaagca gatgttcatc ataaggtaac
     7441 taaagagctt ttgactttaa tagaagaaga tgtaaaacaa aatggcatag gtcaaaaaca
     7501 atttttaaat gccattaaaa taaatttaga aaatatttta agtgtcaatg gtaagaatca
     7561 aggttttgtt tttacttcta aacccccaac agtagttcta atggcaggtt tgcaaggagg
     7621 tggtaagact acaagcacta tcaaactcgc aaattattta aaattacgca ataaaaaagt
     7681 tttagttgca gcttgtgatt tgcagcgttt agcagcagtg gagcaactaa gacaactttg
     7741 tgaagctaat gaaattgaac ttttcttcat agaaaatgaa aaagatccta ttagggttgc
     7801 taaagaggct ttaaaaaagg ctgaaagttc tatggtggat gttttgcttg tggatactgc
     7861 tggacgtttg gctatagatg aagctttgat ggatgagtta agagcagtta aggatgtctt
     7921 aaatcctgat gagatttttt atgttgctga tgcaatgagt ggtcaagatg gggttaagac
     7981 tgctgctagt tttaatgaag ttttaggtat cagtggggta attttatcaa aatttgatgc
     8041 agatactaaa ggtggagtag ccttaggtat agcaaaacaa atcggtattc ctttaagatt
     8101 tattggtgtg ggtgaaaaag tagcagattt agaagttttt ataccagatc gtatagtaag
     8161 tcgtattatg ggtgagggtg atttggcaac tttagctgaa aaaactgctg cgattattga
     8221 tgaaaaagag gctaaaaaac tcaatcaaaa aattaaaaaa ggtgaattta attttaatga
     8281 ttttcttaat caaatggaaa gtattaaaaa attaggaagt atgaagtctt taatcggtat
     8341 gataccagga cttagcggaa tggcaaatgt ggtaaaagat atagatttgg ataattctaa
     8401 agaaatcata cgcattaaag caatgatttc ttcaatgact ccaaaagaaa gagaaaatcc
     8461 tgatttatta aataatgcta gaaagcgtcg tatagcagag ggagcaggtc tttctcaggt
     8521 agaagtcaat cgttttttaa aacaatttag caatgcagca aaacttgcaa aaagattttc
     8581 aggtaaaaaa ggaatggaaa gtttaacaca gatgatgagt caagctagaa ggcaatttta
     8641 aattttattt ataaatactt tttatagtat ctataaataa aatttttaat ttttaaggag
     8701 tataaatgac agttattaga cttacaagaa tgggtagaac caaaagacca ttttatcgta
     8761 ttgtagttac agacagtaga aaacgtcgtg atggtggttg gatagaaagt attgggtatt
     8821 ataatcctat ggtagaacct gaggtaatta aagttgatgc agagcgttta gcttattgga
     8881 aaagtgttgg tgcaaaactt agcgataaag ttgcttctat cactagcaaa taatcatggt
     8941 agagaatttt cttagagaat acgcaaaatt aattgcagat tatcctgaac agattgatac
     9001 tcaaaaaatt gaattaagtg aaaatttttt tgagattgtt ctttttgcac ataaggttga
     9061 tacaggtaag cttataggta aaaatggaaa aatgatcaat gctataaaaa ccgtaatctc
     9121 tgcttataag agcaaggatg caagttctta tagagtaacg gtaaaagcac ttgagtgaaa
     9181 aagattttgt tcaagttgca aaacttggta aaactgtggg tcttaagggt tatgtaaaat
     9241 tgcataacct gagcgacttt tcttctcaat ttaaaaaagg tgctactttt tttataaaaa
     9301 acaccaaaga aatgttaaag attaagcatt ataatgcaaa caattctact gttttatttg
     9361 aaaattatga agatatagaa aaggccaaag aattaactaa tcttattctt tttcagagta
     9421 tcgagaaaag cagacaaact tgtaaattaa aaaaagatga gtttttttat tttgatattt
     9481 tagagtgtga agtttttgaa gaagataaaa gattaggtaa agtggttgat atcttggaaa
     9541 ctggagcttc ttatttattt gaaattcaaa gtgatgaaaa atgggttgaa aaaaaatatc
     9601 ctaaaatatt ttttattcca tatttggata aatttgttaa aaatatagat atagaaaaac
     9661 gacagatttt ttgcacgcaa gatgcttttt taattttaga aaattcatga aatttagttt
     9721 cgtttctttg ttccctaatc ttatggaatt ttactttcaa gattctatac ttgcaagagc
     9781 aaaagaaaaa aaacttttca aacttaattt ttataatcca agagattttt ctaaaaattc
     9841 ttatcataaa gtcgatgatt ataaaatagg tggtggagct ggacttttga tgcaagctga
     9901 acctatgtat gaggtgctaa gaagtattca agaaaaaaaa gaaaatccct attttatttt
     9961 tttaaatcca agtggtaaaa cctttaatca aaaagacgcc aaacgcttaa gtaaaaaaga
    10021 acatatagtt tttgtatgtg ggcgctatga aggtatagat gaaagagtgc ttgaaatttt
    10081 tgcgaatgaa gtttttagta taggggattt tattttaact ggaggagaat tacctgcgct
    10141 tgtaatgtgt gatgcaattt taagaaatgt taacggggtt ttaggaaata tggaaagttt
    10201 ggaagaagaa agctttgaaa ataatttact cgaagcgcct gctttttcaa aaccttttat
    10261 ttttgagaaa aaaaataaaa aattttatac tccttcagag tttttaaagg gtaatcacgc
    10321 tagaattgca ggtttaaaaa ctactttggc gtcttgcaaa acgaaatttt ttcgtccaga
    10381 tttattttta gagcatgaac gcaaaaaata agggattttt tatgaaaaat aaatatatag
    10441 aacaatttga agcaaaacaa attgaaggta aaaatgttcc agattttcgt gctggtgata
    10501 ctttaaagct tgcaattcgc atcaaagaag gagataaaac aagaatccaa aattttgagg
    10561 gtatttgtat tgctagaaga ggtaatggcg taagtgaaac ttttatcgtg cgtaaaattg
    10621 gcgctaataa tgttggcgtt gagagaattt ttcctattta tagtgaaagt ttagaaagta
    10681 ttactgtttt gcgtcgtggt cgtgtacgcc gtgcaagatt attctactta agagatagac
    10741 gcggtaaagc agcgcgtatc aaagagctta aaaaataatt tataattatt tt
//
LOCUS       DBBXPZ010000060        10403 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.062, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000060 DBBXPZ010000000
VERSION     DBBXPZ010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10403
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.062"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            34..642
                     /gene="plsY"
                     /locus_tag="ACJFD7_001279"
     CDS             34..642
                     /gene="plsY"
                     /locus_tag="ACJFD7_001279"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008374 - O-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HGG0860083.1"
                     /translation="MENLIIYAFIYLLGSIPFGLILAKFFAKTDIKKEGSKSIGATNV
                     LRVVKEKNPKLAKKLAIATIILDFAKAAIPLLTLKFLHYDQALLWSVAVLAILGHCFS
                     IYLLFEGGKGIATGAGAMIVLLPLEVLTAFIVWVVIGKIFKISSLASLAALLAFVVSS
                     FIFNYDLEIHTHAPVFIIAFIIVYKHLPNIKRLIFKEECKVI"
     gene            627..944
                     /gene="folB"
                     /locus_tag="ACJFD7_001280"
     CDS             627..944
                     /gene="folB"
                     /locus_tag="ACJFD7_001280"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004150 - dihydroneopterin aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006760 - folic acid-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HGG0860084.1"
                     /translation="MQSHIKIKFHFKCIIGILDFERRKKQKIIIKLKAKANEFLNYAE
                     VITKIKTWYKKEEFYTLEESLDFVSLNLKKDFPNLTNLNIKIFKPHIIKNATVGVKLK
                     KKY"
     gene            1023..1694
                     /gene="hsrA"
                     /locus_tag="ACJFD7_001281"
     CDS             1023..1694
                     /gene="hsrA"
                     /locus_tag="ACJFD7_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homeostatic response regulator transcription
                     factor HsrA"
                     /protein_id="HGG0860085.1"
                     /translation="MRILVIEDEISLNKTIIDNLNEFGYQTDSSENFKDGEYFIGIRH
                     YDLVLANWTLPDGDGAELVNTIKHKSPRTSVMIMSSKTDKETEIKALKAGADDFVAKP
                     LDFDILLARIEARLRLGGTNVIKIEDLVIDPDEEKITYKDQDIELKGKPFEVLTHLAR
                     HSDQIVSKEQLLDAIWEEPELVTPNVIEVAINQIRQKMDKPLNISTIETVRRRGYRFC
                     FPKKS"
     gene            1807..2052
                     /gene="fdxB"
                     /locus_tag="ACJFD7_001282"
     CDS             1807..2052
                     /gene="fdxB"
                     /locus_tag="ACJFD7_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HGG0860086.1"
                     /translation="MSLLITKDCVCCDACREECPDEAIYENSPIYVIDPDLCSECVND
                     FSEPACIVACPYECIIPDPDNVETIEELKLKHRDREF"
     gene            2052..3512
                     /locus_tag="ACJFD7_001283"
     CDS             2052..3512
                     /locus_tag="ACJFD7_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA phosphatase family protein"
                     /protein_id="HGG0860087.1"
                     /translation="MAKKTAVVDLGSNSIRMVIFEKTSRYGFYTTYEYKRKVRLGENA
                     YNNGKILQEEAMQRAEDALAFFKQCALKHKCKKIFIVGTSALRDAPNSKNFIKRIKDN
                     LSLNIRCIDGKSESYLGGLAALNLLSPFKDGTTLDIGGGSSELCLIKNNRIISCISLD
                     IGTVRLKELFYDTGKMDSLEEFIKPILEQIPKEFCNQNLIAIGGSLRAISNSIMQKNS
                     YPLKNLHDFRYMLDEEKGHILKIFNSNLDSLINFGIKKDRFDTIKEGIFIFLKIAEKI
                     KAKQVITSGVGIREGVYLQDLLRPKITFPPNFNPSLKCLQDKFLQSKQKNKTPHFALQ
                     IFTTLKNLHKLNDNYKHTLLNAAKLCHIGEYLNFYFANEHSAHFVLGGLNYGFSHKEK
                     ALIASIIKLNGKKVNPYNLEPYKQLLPNIHTISWLNFILCLAKTLSTNEDKIDFAFAN
                     NTLYIYQENKILNLPKDELKKIAKPATIALAINQKI"
     gene            complement(3509..4306)
                     /locus_tag="ACJFD7_001284"
     CDS             complement(3509..4306)
                     /locus_tag="ACJFD7_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860088.1"
                     /translation="MRLLVLFFLILPLYSVELISYNIYDRNDRVDLMLSFDNAYNGKI
                     SQKKEKNLTLLTFSDLTYSKDELKELNSQLVDKISISSKNNNTYIMLQNKQNINLELS
                     SINDKFGVRIRAIEQGKANIESVPTTTANNSQELMPKPKSTSLEGYDYTNYILVMLIL
                     VILLIVLWWFKKTMVYKNNNVSRDFTMIFQRFLDKNNQLVVFDHANKRYTMIIGNSNV
                     LLESVEIPEEQIIKHTEKTEKNFDSFFEENKKRIQNLIEQRQKGKKS"
     gene            complement(4307..4615)
                     /gene="fliN"
                     /locus_tag="ACJFD7_001285"
     CDS             complement(4307..4615)
                     /gene="fliN"
                     /locus_tag="ACJFD7_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HGG0860089.1"
                     /translation="MSDDIEFNIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKL
                     EVGSVIDLEKPAGESVELYINKRIFGKGEVMVYEKNLAIRINEILDSKTVLQYFKKEI
                     "
     gene            complement(4615..5037)
                     /locus_tag="ACJFD7_001286"
     CDS             complement(4615..5037)
                     /locus_tag="ACJFD7_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheX"
                     /protein_id="HGG0860090.1"
                     /translation="MLKILEYSITHFCEHILRLRIEAAQDISGELYGASIPIMGKSEG
                     ECNFYLFFPKEFLKKIAEILINDEKFKEDDWCDLTKECANQIIGYAKNLLNDAKGDDE
                     YKLGIPEYLGKVDFSEIVLDEALTYKFENCYFRIGYCK"
     gene            complement(5108..5857)
                     /gene="trpA"
                     /locus_tag="ACJFD7_001287"
     CDS             complement(5108..5857)
                     /gene="trpA"
                     /locus_tag="ACJFD7_001287"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HGG0860091.1"
                     /translation="MVDFRKFYKENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILEL
                     GVAYSDPIADGEIIADAAKIALDQGIDIHNVFELLARIKTKKALVFMVYYNLIFSYGL
                     EKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKH
                     AKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKVA
                     DGVIVGTSIVKCFKQGNLDIIMKDIEEIFKK"
     gene            complement(5850..7028)
                     /gene="trpB"
                     /locus_tag="ACJFD7_001288"
     CDS             complement(5850..7028)
                     /gene="trpB"
                     /locus_tag="ACJFD7_001288"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HGG0860092.1"
                     /translation="MKKAYYGDFGGQFLPESAMFALNELEGAFLKFSKDKLFKKELNE
                     LLKTYIGRPTPLYFARNLSKKYQHEIYLKREDLNHTGAHKINNAIAQALLAKKMRKKK
                     IIAETGAGQHGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHAVQSGL
                     KTLKEATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNK
                     KVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTSYHAATLNKGKTGIIH
                     GMKTKVLQDDLGNILPVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECIQALKL
                     LCKEEGIIAAIESSHAVAFLEKLCPTLKKKSVIVVNLSGRGDKDMQMIRDYKKGVIYG
                     "
     gene            complement(7025..7624)
                     /gene="trpF"
                     /locus_tag="ACJFD7_001289"
     CDS             complement(7025..7624)
                     /gene="trpF"
                     /locus_tag="ACJFD7_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HGG0860093.1"
                     /translation="MLKLKICGIKDEKNAKDLAFLNIDFFGLIFAKSPRRVSLEQARN
                     LSAIFHEKDKKVVGVFVDENLEQILRCIKEAKLDGIQIYRTITKEEFEILKVQNVFVW
                     QVISVENSLDLKSEIFANLVLFDAKGILKGGNGISFDWTLLSSYTKDFALAGGIGLDN
                     VHKAVKTGAKILDLNSKLEDEKGLKDINKIKQILKELKK"
     gene            complement(7611..9212)
                     /gene="trpD"
                     /locus_tag="ACJFD7_001290"
     CDS             complement(7611..9212)
                     /gene="trpD"
                     /locus_tag="ACJFD7_001290"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HGG0860094.1"
                     /translation="MILLIDNYDSFVFNVKSMLEQLSNDEILVRRNDAISLSEIKNLN
                     PTHIILSPGPKHPSQSGICLEIFKARLNIPVLGICLGHQALALAFDSLVVKMQEPMHA
                     KNSLIKQCRENELFSNLPSNFSVMRYHSLEVKQLSDELEILALDEKGVIMALGHKNLP
                     YYGVQFHPESYFSEYGLQLFSNFLKQDIKKPQKQENPLSFYLQKMSENHFLQSDDFEQ
                     ICKIIMSKDYEILQVAALLILITEKSLNEKSLSAFVRQILRYSQTFSDESEMIDICGT
                     GGDGFKSINVSTTSAFILAALGVKVAKHGNRAISSSSGSTDVLEALNITTPNTLESVL
                     KQLNNQGLSFLHAPFFHPLVGELKEVRSRLGVRTVFNVLGPLLHPNLKLKYQLMGNYH
                     APVHRLLIEVLKNLGRKKALVVRGNDGMDELSICDESKIYELCEGEILEYSICPEQFG
                     FKRAFHSEIIGSSAYDNAKDLKDILSGRMQGAKFDLVVLNAMFALYTANKASSPLVAK
                     DMILEAIYSGKVIEYFKEYQAYAKA"
     gene            complement(9209..>10403)
                     /gene="trpE"
                     /locus_tag="ACJFD7_001291"
     CDS             complement(9209..>10403)
                     /gene="trpE"
                     /locus_tag="ACJFD7_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HGG0860095.1"
                     /translation="SYFAEDLTKVIIGIDCDYLDANELSFSEFKAKYYEALSKNKICD
                     FAGFFGVFSANFVSLFEKIPLSSKKNYDFPLFLFANAKAYLIYEKNSKMFFKFGASKY
                     FEYLKDDIEPMKKKQKNDFEILNSLEDEKNDFLKMCEKAKEYLLSGDIFQVVLSKQLC
                     IKHQVNAFDYYESLSALNPSAYMFYFPSKYGVVLGSSPEFLLKIKKREIYLAPIAGTR
                     NLENNCDLLALEKDLLSDEKELSEHKMLVDLARNDASKFGTQTRVENLFSIIKNKFVM
                     HIVSEVYANMKEDASIFDVIEAVFPAGTLSGAPKIRALEITSELEDCDRGIYGGAVGF
                     LNFNEDITLAILIRCTFFTQDKAYLASGAGIVLQSESQKEYAEICAKRKALLVAFENL
                     KKENQ"
BASE COUNT         3674 a         1789 c         1277 g         3663 t
ORIGIN      
        1 cttaaaattt taagatgatt tgaaaaggat attatggaaa atttaataat ttacgctttt
       61 atatatcttt taggttcaat cccttttggg ctaatcctag ctaaattttt tgctaaaact
      121 gatatcaaaa aagaaggttc aaaaagtata ggagcaacca atgttttaag agtagtaaaa
      181 gaaaaaaatc ccaaactagc aaaaaaactt gccattgcta caataatttt agattttgca
      241 aaagcagcta ttcctttatt aaccttgaaa tttcttcatt atgatcaagc tttgctttgg
      301 agcgtggcag ttttggctat tttgggacac tgtttttcaa tttacttgtt atttgaagga
      361 gggaaaggca tagcaacagg agcaggtgct atgatagttt tgcttccatt ggaagtgctt
      421 acagcattta ttgtatgggt agttatagga aaaattttta aaatatcttc gttagcttct
      481 ttagcagcat tacttgcttt tgttgtaagt tcttttatat ttaattatga cttagaaatt
      541 catacacatg cacccgtttt cattatcgct tttattatag tatataaaca tctacctaat
      601 attaaaagat tgatttttaa agaagaatgc aaagtcatat aaaaataaaa tttcacttta
      661 agtgtatcat tggtatatta gatttcgaaa gaaggaaaaa acaaaaaatt attatcaagc
      721 ttaaagctaa agcaaatgaa tttttaaatt atgcagaagt aattaccaaa attaaaacat
      781 ggtataaaaa agaagaattt tacacccttg aagagtcttt agactttgta agcttaaatt
      841 taaaaaaaga ttttcctaat ttaaccaatc ttaacataaa aattttcaaa ccccatataa
      901 taaaaaatgc tacagttggg gttaaattga aaaaaaaata ttaatttttt tttaaagata
      961 tctaaacatt tacttaagct atgatataat tctttaaatt tttcttaata aggatagaac
     1021 aaatgagaat tttagttata gaagatgaga ttagcctaaa taaaacaatt atagacaatc
     1081 ttaatgaatt tggttatcaa actgattctt ctgaaaattt taaagatgga gaatacttta
     1141 tcggcattag acattatgat ttagttttag caaactggac tttacctgat ggagatggag
     1201 cggaacttgt taacactatt aagcataaat ctccaagaac ttcagttatg attatgtctt
     1261 caaaaacaga caaagaaaca gaaatcaaag ctttgaaagc tggagctgat gattttgttg
     1321 caaaaccttt ggattttgat attctactcg caagaattga agcaagacta agacttggcg
     1381 gaaccaatgt tattaaaatt gaagacttag ttattgatcc agatgaggaa aaaattactt
     1441 ataaagatca agatatagaa cttaaaggaa aaccttttga agttttaacg cacttagcaa
     1501 gacattcgga tcaaattgta tccaaagaac aacttttaga tgccatctgg gaagaacctg
     1561 agctagtaac tccaaatgtt atcgaagtag ctatcaatca aattcgtcaa aaaatggata
     1621 aaccattaaa tatatctacc atagaaacag ttcgtcgtag aggataccgt ttctgcttcc
     1681 ctaaaaaatc ttaacaattt tgcaccttcg gtgcaaaaaa tttatcttta tttctatttt
     1741 tatattttat ttaagtttgg ttattgtata aactaaaatt attttttaaa tttttgaaag
     1801 gttatgatgt ctcttttaat tacaaaagac tgcgtatgtt gtgatgcttg cagagaagaa
     1861 tgtcctgatg aagctattta tgaaaatagt ccaatttatg taatagaccc tgatctttgt
     1921 tcagagtgcg ttaatgattt ttcagagcct gcctgtattg ttgcttgccc atatgaatgt
     1981 atcattcctg atcctgataa tgtagaaact atagaagaat taaaactcaa acatagagat
     2041 agagaatttt aatggcaaaa aaaacagccg ttgttgatct tggctcaaac tccattagaa
     2101 tggtgatttt tgaaaaaact tctagatatg gtttttatac aacttacgaa tacaaacgca
     2161 aagtaagact tggagaaaat gcttataata atggcaaaat tctccaagaa gaagccatgc
     2221 aaagagccga agatgcctta gcttttttca aacaatgcgc tttaaagcat aagtgcaaaa
     2281 aaatatttat agtaggcaca tcagccttaa gagatgcccc aaattcaaaa aatttcatta
     2341 aaagaatcaa agataatctg tctttaaata tacgctgtat agatggaaaa agcgaaagtt
     2401 acttaggtgg tcttgcagct ctaaatttat taagtccttt taaggatgga accactttag
     2461 acataggtgg tggttctagt gaattgtgtt taataaaaaa taatagaatt atttcttgca
     2521 tatctcttga tattggcact gttaggctaa aagaattgtt ctatgatact ggaaaaatgg
     2581 attctttaga agaatttata aaaccaattt tagaacaaat tcctaaagaa ttttgcaatc
     2641 aaaaccttat tgcaataggt ggaagcttaa gagcaatatc taattccatc atgcaaaaaa
     2701 attcctatcc actgaaaaat ttacatgatt ttcgctatat gctagatgaa gaaaaagggc
     2761 atattttaaa aatttttaat tcaaacttag actctttaat caattttggc ataaaaaagg
     2821 atcgttttga taccattaaa gagggtatat ttattttttt aaagattgcg gaaaaaataa
     2881 aagccaaaca agttatcacg agtggggttg gaatcagaga aggagtttat ttgcaagatt
     2941 tacttcgtcc taaaatcact tttccaccaa attttaatcc tagtttaaaa tgtttacaag
     3001 ataaattttt acaatcaaaa caaaaaaata aaactccaca ttttgctctg caaattttta
     3061 caacccttaa aaatcttcat aaacttaacg ataactataa gcatacttta ctaaatgctg
     3121 ctaaattatg ccatattgga gaatatttaa atttctattt tgctaatgaa cactctgctc
     3181 attttgtact aggtggatta aattatggat tttcacataa agaaaaagct ttaattgcta
     3241 gcattattaa gcttaatgga aaaaaagtta acccttataa tcttgaaccc tataaacaac
     3301 ttttacccaa tattcatacc atttcatggc ttaattttat tttgtgccta gctaaaactt
     3361 taagcacaaa tgaagataag attgattttg cttttgcaaa caatactctt tatatatatc
     3421 aagaaaacaa aattcttaat ttacccaaag atgagctcaa aaaaattgca aaaccagcta
     3481 ccatagcatt agcaatcaat caaaaaattt aagatttttt acctttttga cgctgctcta
     3541 taagattttg aattcttttt ttattctctt caaaaaaaga atcaaaattt ttctctgttt
     3601 tttctgtatg ttttattatt tgttcctctg gaatttcaac actttctaaa agcacattgg
     3661 aattacctat tatcattgta taacgtttat tagcgtgatc aaaaacaaca agttgattat
     3721 ttttatctaa aaatctttgg aaaatcatag taaaatctct agaaacattg ttatttttat
     3781 aaaccatagt ctttttaaac caccaaagca ctattaacaa aataactaaa atcagcatta
     3841 ctaagatata atttgtataa tcataccctt ctaaacttgt actttttggt ttaggcatta
     3901 attcttgaga attattcgca gtagttgtag gtacagattc gatatttgct tttccttgct
     3961 ctatagctcg tattcttact ccaaatttat cattgataga actaagttct aaattaatat
     4021 tttgtttgtt ttgtagcata atataggtat tattattttt agaactaata ctaattttat
     4081 ctacaagttg agagttaagt tcttttaatt catctttaga atacgttaaa tcactaaaag
     4141 ttaaaagagt taaatttttt tctttttttt gagaaatctt gccattatag gcattatcaa
     4201 aagaaagcat taaatctact cgatcatttc tatcgtagat attataacta atcaactcaa
     4261 cactatataa aggtaaaatt aaaaaaaata atactagcaa tctcatttaa atttcttttt
     4321 taaagtattg aagcacagtc ttagaatcca aaatttcatt aattcttata gcgagatttt
     4381 tttcataaac cataacctcg cctttaccaa aaattctttt attgatataa agctcaacgc
     4441 tttctccagc aggcttttca agatcaataa ccgagcctac ttcaagtttt aaaagctccg
     4501 ctacactcat atttgtagtt ccaagctcac ttacaaaatc tactgtaata tctaagatat
     4561 cttcataaga ttgtaaaagc ccatgatgaa tgttaaactc tatatcatcg ctcattattt
     4621 gcaatatcct attctaaaat aacaattttc aaatttataa gttaaagctt catctagaac
     4681 tatttcagaa aaatcaactt ttcctaaata ttccggaatt ccgagtttat actcgtcatc
     4741 acccttggca tcatttaaca aatttttagc ataacctata atctgattgg cgcattcttt
     4801 agttaaatcg caccagtcat cttctttaaa tttttcatca ttaattaaaa tttctgcaat
     4861 tttttttaaa aattcttttg gaaaaaataa ataaaaatta cattctcctt cgcttttgcc
     4921 catgatagga atactcgctc cataaagttc accgcttata tcttgagctg cttcaatgcg
     4981 aagtcttaag atatgctcgc aaaaatgagt gatggaatac tcaagaatct ttaacataac
     5041 taccaccttt ataaaaaact taatttaaaa ttatagtaaa tataaaataa aaatatgttt
     5101 taaaatttta ttttttgaaa atttcttcaa tatctttcat tattatatcc aaatttcctt
     5161 gtttaaaaca ctttactatg ctagttccca caatcactcc gtcagcaact tttctcattc
     5221 tttttacatc ttgattattt tgaatgccaa agcctacaaa aataggcaaa tttgtaaaag
     5281 atctgatttc ttttacttta tcttgtaaga ttgcttcttc gacacttttc gtacctgtaa
     5341 tacctatgct tgctaataaa taaataaaac ctttagcatg ttttactaac tttttaaccc
     5401 tttctttagg ggttgtaaca cttacaagtg taattaaagc tatattatat ctttcacact
     5461 ctttaattaa atcatcactt tcttcaaaac tcaattcagg tacaatcaaa gcacaaatcc
     5521 ctaaagattt tgcttttttc acaaattttt ccaagccata agaaaaaatt aaattataat
     5581 aaaccataaa aaccaaagct tttttagttt ttatcctagc taaaagctca aaaacattgt
     5641 gaatatctat accttgatca agagctattt ttgccgcatc tgcaataatc tcaccatcgg
     5701 caataggatc actataagca acaccaagtt ctaaaatatc aataggactt tgatctaatc
     5761 tttgcaaaaa agcttcactt gtttgaagat ttggataacc caaaaccgta taagccacat
     5821 ttgcattttc tttataaaat tttctaaaat caaccataaa tcaccccttt tttataatct
     5881 ctaatcattt gcatatcttt atctcccctg cctgaaagat ttactactat cacgcttttc
     5941 ttttttaaag ttggacaaag tttttctaaa aatgctacag catgagagct ttcaatcgct
     6001 gcaataatac cttcttcttt acaaagtaat tttaaagcct gtatacattc ttcatcactt
     6061 atagcatgat attgtgctct tttgctttca aataaaaaag catgcaaagg accaattcct
     6121 ggataatcaa gccctgcaga aacactatgt acaggcaaga tattgcctaa atcatcttgt
     6181 aaaaccttgg ttttcatacc gtgaataatg cctgtttttc ccttatttaa agtcgctgca
     6241 tgataagacg tatcaatgcc aagcccccct gcttcaatac ctataagttt aacattttca
     6301 tctttgataa aatcataaaa aatcccagct gcattgcttc cacctccaac agctgcgata
     6361 atataatcta cttttttatt gagtttttga agttgcattt tgcattcttt tcctataata
     6421 ctttgaaaat gcattaccat tttaggataa ggataaggac ctaccgcact tccaaccaca
     6481 taaaaaatat ttttaatatc tccaacccaa gcttgaatag ccgcagtagt agcttctttt
     6541 agagttttaa gcccactttg tactgcatga attttagcac ccaaaagctc cattttataa
     6601 acatttaaag cctgtctttg cacatcggtt gcccccatat aaatttcaca ttcaagtcct
     6661 aaaagtgctg ctgcagtggc tgttgcaagc ccgtgttgac ctgctcctgt ttctgctatg
     6721 atttttttct ttctcatttt ttttgctaaa agggcttgag cgatggcatt attgatttta
     6781 tgtgctccgg tatgatttaa atcctcgcgt tttaaataaa tttcatgctg atattttttg
     6841 cttaaatttc tagcaaaata aagtggagta ggacgcccta tataagtttt taaaagctcg
     6901 tttaattctt ttttaaagag tttatcttta gaaaatttca aaaaagcacc ttctagctca
     6961 tttaaagcaa acattgcact ttcaggcaaa aactgcccac caaaatcccc ataatacgct
     7021 tttttcattt tttcaactcc tttaaaattt gttttatttt gttgatatct tttaagcctt
     7081 tttcatcttc aagttttgaa ttaagatcta aaattttagc tcccgttttt acagccttat
     7141 gaacattatc caaacctata cctccagcta atgcaaaatc tttagtataa gaacttaata
     7201 aagtccaatc aaaacttatt ccattaccgc cctttaaaat tcccttagca tcaaaaagta
     7261 ctaaattagc aaaaatttca ctttttaaat ctaaactatt ttccacacta atcacctgcc
     7321 aaacaaaaac attttgcacc tttaaaattt caaattcttc tttggtaata gtgcgataaa
     7381 tttgtatccc atcaagctta gcttctttaa tacatcttaa aatttgttcc aaattttcat
     7441 ctacaaaaac accgacaact tttttatctt tttcatgaaa aattgcactt aaatttcttg
     7501 cttgttctaa actcactctt cttggacttt tagcaaaaat aagtccaaaa aaatcaatat
     7561 ttaaaaaagc taaatctttg gcattttttt catctttaat accacaaatt ttaagcttta
     7621 gcataagctt gatactcctt aaaatattct ataaccttac ctgaataaat ggcttctaaa
     7681 atcatatctt tagccactaa aggcgaactt gctttattgg ctgtataaag tgcaaacata
     7741 gcatttaaaa ctaccaaatc aaattttgcc ccttgcattc taccgcttaa aatatccttt
     7801 aaatctttag cgttgtcata tgcactagat cctatgattt cactatgaaa agctctttta
     7861 aaaccaaatt gttcaggaca gatagaatac tctaaaattt ctccttcaca aagctcataa
     7921 attttacttt catcgcaaat actaagctca tccataccat catttcctct taccactaaa
     7981 gcttttttgc gtcctaaatt ttttaaaacc tctatcaaaa gcctatgcac aggtgcgtga
     8041 taatttccca taagttgata ttttaacttt aaattagggt gcaataaagg acctaaaaca
     8101 ttaaaaaccg ttcttactcc aagtcttgat ctgacctctt taagttctcc taccaaagga
     8161 tgaaaaaatg gagcatgtaa aaaactaagc ccttgattat ttagttgttt taaaactgat
     8221 tctaaagtgt ttggagtagt tatatttaaa gcttctaaca catctgtact tccgctagaa
     8281 cttgaaatgg cacgatttcc gtgtttggct acttttactc ctaaagctgc taaaataaaa
     8341 gcactagtcg tagaaacatt gatactttta aaaccatctc cacctgttcc acaaatatca
     8401 atcatctcac tctcatcact aaaagtttga gaatatctta aaatttgtct tacaaaagca
     8461 cttaaagatt tttcgtttaa agacttttca gtgattaaaa tcaacaaagc cgctacttgt
     8521 aaaatttcat aatctttaga cataataatc ttacaaattt gctcaaaatc atcgctttgt
     8581 aaaaaatgat tttcactcat tttttgcaaa taaaaactta aaggattttc ttgtttttgt
     8641 ggttttttta tatcttgttt taaaaaatta gaaaaaagtt gtaagccata ttcactaaaa
     8701 tagctttcag gatgaaattg cacaccataa taaggtaaat ttttatgtcc caaagccata
     8761 atcacaccct tttcatcaag ggctaaaatt tcaagctcat cactaagctg tttaacctct
     8821 aaagaatgat aacgcattac actaaaattt gaaggcaaat tagaaaataa ttcattttcc
     8881 ctgcactgtt ttatcaaaga attttttgca tgcataggct cttgcatctt aaccactaaa
     8941 gaatcaaaag ctaaagctaa agcttgatgc cctaagcaaa tgcccaaaac agggatatta
     9001 agccttgctt taaaaatttc aagacaaatc ccactttgac ttggatgctt tggaccagga
     9061 cttaaaataa tatgagtagg atttaaattt ttaatttcac tcagagaaat tgcatcattt
     9121 cttcttacta aaatttcatc attgctgagt tgctctaaca tgcttttaac attaaaaaca
     9181 aaagaatcat aattatcaat taaaagtatc attgattttc cttttttaaa ttttcaaaag
     9241 ctaccaaaag cgccttgcgt ttagcacaaa tttctgcata ttctttttga ctctcacttt
     9301 gcaaaacaat acccgcccca cttgccaaat aagccttatc ttgagtaaaa aaagtgcaac
     9361 ggattaaaat cgctaaagtt atgtcttcgt taaaatttaa aaatcctacc gcaccaccat
     9421 aaattccacg atcgcaatct tcaagctcgc tagtgatctc taaagctctt attttaggag
     9481 ctccgcttaa agttcccgct ggaaaaactg cttcaatcac atcaaaaata ctcgcatctt
     9541 ctttcatatt ggcatacact tcactcacta tgtgcattac aaatttattt ttaataatag
     9601 aaaaaagatt ttccactctt gtttgagtgc caaatttaga agcatcattt cttgctaaat
     9661 ctacaagcat cttatgttca ctaagttctt tttcatcact taaaagatct ttttctaaag
     9721 ctaaaagatc acagttattt tccaaatttc tagttccagc aataggggct aaataaatct
     9781 ctcttttttt aattttcaat aaaaactctg gagaagaacc caaaacaaca ccatatttac
     9841 ttggaaaata aaacatataa gcgcttggat ttaaagcact taaactctca taataatcaa
     9901 aagcatttac ttgatgtttg atacaaagtt gcttacttaa gaccacttga aaaatatctc
     9961 cacttaaaag atattctttg gctttttcgc acatttttaa aaaatcattt ttttcatctt
    10021 ctaaagaatt taaaatttca aaatcatttt tttgtttctt tttcattggt tcaatatcat
    10081 cttttaaata ttcaaaatat tttgaagcac caaatttaaa aaacatcttg ctatttttct
    10141 cataaatcaa ataagcctta gcattggcaa ataaaaataa aggaaaatca taatttttct
    10201 tagaagaaag tggaattttt tcaaacaaag atacaaaatt tgcactaaaa actccaaaaa
    10261 atccagcaaa gtcgcaaatt ttattcttgc ttaaagcttc ataatatttt gccttaaact
    10321 cgctaaagga taattcatta gcatctaaat aatcacaatc aatccctata attaccttgg
    10381 tcaaatcctc tgcaaaataa gaa
//
LOCUS       DBBXPZ010000061        10262 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.063, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000061 DBBXPZ010000000
VERSION     DBBXPZ010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10262)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10262)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10262
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.063"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            7..435
                     /gene="fspA2"
                     /locus_tag="ACJFD7_001292"
     CDS             7..435
                     /gene="fspA2"
                     /locus_tag="ACJFD7_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellum-secreted nonflagellar protein FspA2"
                     /protein_id="HGG0860096.1"
                     /translation="MKIDTLTKNFSNYQTQINKNNDLASNVHSDNVVKIQISDEARSL
                     SQTNSKNEKEYEIKVSQEKIENHKDQNSIQNSKGGVNPALEALIAKLAEILAKIAELA
                     QKMTNANEQMKTTFQKQIDVLKSQADVIQAQIQELQSQQA"
     gene            501..1757
                     /gene="murA"
                     /locus_tag="ACJFD7_001293"
     CDS             501..1757
                     /gene="murA"
                     /locus_tag="ACJFD7_001293"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008760 - UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0019277 - UDP-N-acetylgalactosamine
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HGG0860097.1"
                     /translation="MTYLEIEGTNHLSGNVTISGAKNAALPLIVSSILAKNEVKINNV
                     PNVADIKTLISLLENLGAKVNFQNNSALLNTNTLNQTIAKYDIVRKMRASILTLGPLL
                     ARFGHCEVSLPGGCAIGQRPIDLHLLALEKMGANIQIKQGYVVASGNLKGNEILFDKI
                     TVTGSENIIMAAALAKGKTKLLNVAKEPEVVQLCEVLKDAGLEIKGIGTDELEIYGSD
                     GELLEFKEFSVIPDRIEAGTYLCAGAITNSKITLDKVNATHLSAVLAKLHQMGFETLI
                     TEDSITLLPAKEIKPVEIMTSEYPGFPTDMQAQFMALALKANGTSIIDERLFENRFMH
                     VSELLRMGADIKLNGHIATIVGGKELNAADVMATDLRASSALILAALTAKGTSKVHRI
                     YHLDRGYENLEEKFKDLGVKITRLEE"
     gene            1754..2914
                     /gene="moeA"
                     /locus_tag="ACJFD7_001294"
     CDS             1754..2914
                     /gene="moeA"
                     /locus_tag="ACJFD7_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HGG0860098.1"
                     /translation="MKNIFETLKDLENQISCLDESELISLEKAKDRILAKDLYARKNL
                     PSFDNAALDGYAFNYTDINEALEIKGTIFAGDKNFYTVAKNECYKIMTGAKMPKNADT
                     ILMLEDEYIEENKLIIKKAPKQYNAYRYKGEELKKGEILLQKGTKLNDKHIALLASQG
                     LYKIEVIRKIRIGIFSSGNELKEPWQECDEESIYNANALPLLTMLQNASYLGIIKDDF
                     KSTKEALENTNFDLLITSGGASVGEADFMEKALDELGFTPLFKGLKARPARPTKLYRK
                     GENFVLILPGNPMAAYLSCFIFAKKIINLLSGNLDNPLTFYGKMGMDLKLKSGRNNLI
                     LGNLEKDIFTPFNENKFGSGMILPLIKSEFLLISEENISELKKGDEITLLKI"
     gene            complement(2936..3784)
                     /gene="lepB"
                     /locus_tag="ACJFD7_001295"
     CDS             complement(2936..3784)
                     /gene="lepB"
                     /locus_tag="ACJFD7_001295"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HGG0860099.1"
                     /translation="MEILKKLYKFSQSWTGTVVIVLLVIFFFIQAFVIPSGSMKNTLL
                     VGDFLFVKKFSYGIPTPHIPWLEIPVLPDFNKDGHLIKAQGPQRGDIVVFRNPRNEKE
                     HFVKRCVGTGGDRIVYANKTLYVRMHEGDEFMKEHYPNDLVTLGGQIYVKEPYKQKGI
                     HYDPKKDIESDILRFLSIGDFAMSPTYIKELGNHIGFSGGNAYVFDVPENEYFMMGDN
                     RNYSYDSRFWGSVPYRLIVGKPWFVYFSWDKDKNVRWERIGRFVDTLENDEQYIHDHD
                     DEDKLS"
     gene            complement(3794..4642)
                     /gene="folD"
                     /locus_tag="ACJFD7_001296"
     CDS             complement(3794..4642)
                     /gene="folD"
                     /locus_tag="ACJFD7_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004488 - methylenetetrahydrofolate
                     dehydrogenase (NADP+) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HGG0860100.1"
                     /translation="MTLLDGKALSAKIKEELKEKNQFLKSKGIESCLAVILVGDDPAS
                     QTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLSGHI
                     CKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEIDLEGKDA
                     VIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLQSDM
                     VKEGVIVVDVGINRLESGKIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKS
                     AKNRLN"
     gene            4722..5069
                     /locus_tag="ACJFD7_001297"
     CDS             4722..5069
                     /locus_tag="ACJFD7_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HGG0860101.1"
                     /translation="MKIVLMFFLFSISLFGADFITLKEYSKMLYENPRGISCKECHGA
                     NGSEQILGYYMKNGIKTAYKVPSIQNLSFENFKNSLNQSKDAKSIMPNYSLTNDEIVT
                     LYNYIKQFSKEEK"
     gene            5066..6340
                     /gene="hemL"
                     /locus_tag="ACJFD7_001298"
     CDS             5066..6340
                     /gene="hemL"
                     /locus_tag="ACJFD7_001298"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042286 - glutamate-1-semialdehyde
                     2,1-aminomutase activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HGG0860102.1"
                     /translation="MTNKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIF
                     DIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDF
                     PHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAATFN
                     SPSSLGVLEDVAKHTLVAKYNDINSVKELFEKNKDIACVIIEPIAGNMGLVPAKQDFL
                     EELAKICKNNQTLLIFDEVMSGYRASYLGSYGINHIQADIITFGKVIGGGLPAAAFAS
                     RAEIMNILSPLGGVYQAGTLSGNPLAMAAGIASLTKAKKKTKLYDKLGKLAKKLTQGM
                     KKLADEKGLPLQVCHVGSMFGYFFTKDPVSNYQDALKSDLALFSKFHKNMLENGIYLA
                     PSQFETGFICSKMDDKIIDITLEAVRESFKRI"
     gene            6337..6666
                     /locus_tag="ACJFD7_001299"
     CDS             6337..6666
                     /locus_tag="ACJFD7_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HGG0860103.1"
                     /translation="MSNILKEEKNHLENSNSKRQKIIRKTLEAADGLSLGISMVVAVF
                     IGVGIGYLLKKFTPYPWLFWLGVFWGISAAILNVYKAYKVQVKSYEEFKERDELIKEK
                     IQKEKNK"
     gene            6666..7169
                     /locus_tag="ACJFD7_001300"
     CDS             6666..7169
                     /locus_tag="ACJFD7_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860104.1"
                     /translation="MEHKKALFCIFAIIHLFFWIIFSSLNHFKLDTFLSYEIAFFSVL
                     LIIFASYLNYKKVIIKKSKNYEKDFNFISSLFIKKKQNLSKIIHFKVLKDDLKPNVKE
                     KIHFFAMFFTLFKLMAYVILVAGFLFLHRQDKLDIFAYICGISSLLVCVFIFILYIKK
                     YESKKNY"
     gene            7147..8334
                     /locus_tag="ACJFD7_001301"
     CDS             7147..8334
                     /locus_tag="ACJFD7_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0860105.1"
                     /translation="MSPKKIIKSMTALFAGMAFLFAGNALIVSSIGVILKENGESSLA
                     VGVVSSCFFVGALIGTISAHKIISRIGHIRSFGLFGAIFGISAMLHTVSENLIFWAVL
                     RFFIGICYYGLLMVIESWLNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHS
                     VFILSATLILLSSLPLNLIKIKEPVLPASSPISIPKIFDIAPLAIVTSFIAGMLINGF
                     FSMASLFILLQGFDTKAVSYFIFCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFI
                     TMLIFIFFKLHLYMQYFLGITLGIGIFCLYALALARANDVLVSKNKGVELGRGVLFCY
                     SLGSLFGPLILGFLMQYFEIKGFIWFYIVSLAFLILFAINKPNILNKKFKKKPGNMVI
                     FDD"
     gene            8327..>10262
                     /locus_tag="ACJFD7_001302"
     CDS             8327..>10262
                     /locus_tag="ACJFD7_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HGG0860106.1"
                     /translation="MINTQLASQIANTQKNDLKVDNSASKDKTNLKDNPKEALAQALK
                     QNLGLSKDASSEEILAKFVQNETGTKLKELVNKLLDQINAQKNPDSPVLKQGKNLNLA
                     PNFANELKILSTELAKSDTFTQVLDRLNQILKPASEIKNNNLAPLFKNSGVFLEAKLK
                     DALNEELLPKSFHSLLSTIKGLSSEKLSVQIAQLANTNLSPKDTLKELKNIINSSKNE
                     NKQILNQSSFKALLNLSSKLENFKNYISKNPSHAQEKITPIANKILKELNSIKNDFFK
                     ALNKPENLMIKDPNILKQTATAFEKLENTLKNILGNQASKIQDKENILENLLSNKENI
                     KEEKLNHNTKNQDEEKHIKASKEDENLDSGIKTHEEDTQDTKNDIQNNETENKPDNDI
                     KNSTPNQEKIKDEKQEKSKENIKENPKFYETKTENKTSINTNTNTSNPNTNNTQNLNN
                     TQNIQSNNNQTMQNIFKNQEFIKQNIVKNLAFNVENLDLEQVQDLSKNLSNLSRRLNE
                     SLKELEPYTQNAKLNQAELKNLEHKLNLSIKDLAQIKPKTEQDIAESLHHDVKSTLLQ
                     ISNLAKNEGNEAVYNQANRLLAQIEINQLMSLANDSINTYLPFSWDDLNDSKIMFRRG
                     KKDKFFAQIKLEFAKLGDLEI"
BASE COUNT         3851 a         1558 c         1533 g         3320 t
ORIGIN      
        1 tttaagatga aaatagatac tttgacaaaa aattttagca attatcaaac acaaataaac
       61 aaaaacaatg atttggcaag taatgttcat agtgacaatg tggttaaaat tcaaatttca
      121 gatgaagcaa gaagcttaag tcaaacaaat tcaaaaaatg aaaaagaata tgaaatcaaa
      181 gtaagtcaag aaaaaataga aaaccacaaa gaccaaaatt ccattcaaaa tagcaaaggt
      241 ggcgtaaatc ccgcattaga ggctttaata gcaaaattag ctgaaatttt agctaaaatt
      301 gcagaacttg ctcaaaaaat gacaaacgct aacgaacaaa tgaaaacgac atttcaaaaa
      361 caaattgatg tgctaaaatc tcaagcagat gtaattcaag ctcaaattca agaactccaa
      421 agccaacaag cttgattata ttttttcaaa agtttaagaa tgctataatg atgcattttt
      481 aaactttttc aaggaaaaat atgacttatc tagaaatcga aggcacaaat catctaagcg
      541 gaaatgttac aataagcgga gcaaaaaatg ctgccctacc cttgatcgtt tcaagcatac
      601 ttgctaaaaa tgaagtaaaa atcaacaatg ttcctaatgt tgctgatata aaaactctta
      661 tatctttgct agaaaattta ggagctaagg tcaattttca aaacaatagt gctttattaa
      721 acacaaacac tcttaatcaa accatagcta aatatgacat tgtgcgtaaa atgcgtgctt
      781 ccatacttac tctaggacct ttacttgctc gttttggaca ttgtgaagta tctttgcctg
      841 gtggatgtgc cataggacaa agacctattg atttacatct tttagccttg gaaaaaatgg
      901 gggcaaatat acaaattaaa caaggctatg tcgtagctag tggaaattta aaaggcaatg
      961 aaattctttt tgataaaatc acggttacag gtagtgaaaa catcatcatg gcagcagctt
     1021 tagccaaagg taaaaccaag ctcttaaatg ttgcaaaaga acccgaagta gttcaacttt
     1081 gcgaagtttt aaaagacgca ggacttgaaa tcaaaggcat aggtacagat gaacttgaaa
     1141 tttatggtag tgatggagaa cttttagaat ttaaagaatt tagcgttata cctgatagaa
     1201 ttgaggcagg aacttatctt tgtgcagggg ctattacaaa ttctaaaatt actttagata
     1261 aagttaacgc cactcatctt agtgcagttt tagcaaaact tcatcaaatg ggttttgaaa
     1321 ctttgattac agaagatagt atcaccctac ttcctgctaa agaaattaaa cctgtagaaa
     1381 tcatgacaag tgaatatcca ggctttccaa ccgatatgca agcgcagttt atggcactag
     1441 ctttaaaagc taatggaact agcattatcg atgaaagact atttgaaaat cgttttatgc
     1501 atgtaagtga acttttaaga atgggcgcgg atattaaact caatggtcat attgctacta
     1561 tagtaggcgg aaaagaactt aacgctgctg atgtcatggc tacagatttg cgtgcttctt
     1621 cagcccttat cttagcagct cttacagcta aaggtacaag caaagtccat agaatttacc
     1681 atcttgatag gggttatgaa aatttagaag aaaaatttaa agatttgggt gtgaaaatca
     1741 caaggcttga agaatgaaaa atatctttga aaccttaaaa gacttagaaa atcaaatttc
     1801 atgtttagat gaaagtgagc ttattagcct tgaaaaagca aaggatagaa ttttagctaa
     1861 agatttatac gctagaaaaa atctacctag ttttgacaat gctgctcttg atggctatgc
     1921 ttttaattat actgatatca atgaggcttt ggagattaaa gggactattt ttgcaggaga
     1981 taaaaatttt tatacagttg ctaaaaatga atgctataaa atcatgacag gggctaaaat
     2041 gcccaaaaat gctgatacta tcttaatgct agaagatgag tatatagaag aaaataaact
     2101 catcattaaa aaagctccta aacaatacaa tgcctatcgc tataaaggtg aagaattaaa
     2161 aaaaggtgaa attttacttc aaaaaggtac caaacttaat gataaacata tcgccctgct
     2221 tgcttctcaa gggctttata aaatagaagt cataagaaaa attcgcatag gtattttttc
     2281 aagtggaaat gagctaaaag aaccttggca agaatgcgat gaagaaagta tttataatgc
     2341 caatgctttg cctttactaa ctatgcttca aaatgcttct tatttaggca ttatcaaaga
     2401 tgattttaaa agcactaaag aggctttaga aaatacaaat tttgatcttt taatcacttc
     2461 aggaggtgca agcgttggcg aggctgattt tatggaaaaa gctttagatg aattaggctt
     2521 tactccgctt tttaaaggtt taaaagcacg ccctgcaaga cctactaagc tttatagaaa
     2581 aggtgaaaat ttcgtattga ttttaccagg aaaccctatg gcagcttatc tttcttgttt
     2641 tatttttgct aaaaaaatca ttaatttatt aagtggaaac ctagacaatc ctttaacatt
     2701 ttatggcaaa atgggtatgg atttaaagct taaaagcgga agaaataatc tcattttagg
     2761 aaatttagaa aaagatattt ttacaccatt taatgaaaat aaatttggat ctggtatgat
     2821 acttccactt attaaaagtg aatttttact tataagtgaa gaaaatataa gtgaattaaa
     2881 aaaaggtgat gaaatcacgc ttttaaaaat ataatgtttg tgtttttcac aaacattagc
     2941 ttaatttatc ctcatcatca tgatcatgga tatattgttc atcattttcc aaggtatcaa
     3001 caaaacgccc tatcctttcc cagcgaacat ttttatcttt atcccaagag aaatatacaa
     3061 accaaggttt acctactatc aacctataag gaacagaacc ccaaaaacga ctatcataag
     3121 aataattacg attatcaccc atcatgaaat actcattttc aggcacatca aaaacataag
     3181 catttccgcc actaaaacct atatgatttc caagttcttt aatataagtt ggagacatgg
     3241 caaaatcacc tatgctaaga aagcgtaaaa tatcactttc tatatctttt tttggatcat
     3301 aatgaatacc tttttgttta taaggttctt ttacataaat ttgccctcca agagtaacaa
     3361 gatcattcgg ataatgttct ttcataaatt catcaccctc atgcattctt acataaagtg
     3421 ttttatttgc ataaactatc ctatctcctc ctgtgcctac acaacgcttt acaaagtgtt
     3481 ctttttcatt tctaggattt ctaaaaacaa ctatatctcc tctttgtggc ccttgtgctt
     3541 ttatcaaatg cccatcttta ttaaaatccg gcaaaacagg aatttccaac caaggaatat
     3601 gaggagttgg gataccatag ctaaattttt taacaaataa aaaatcccct accaataagg
     3661 tgtttttcat agaaccagaa ggaataacaa aagcttgtat aaagaaaaaa atcaccaaaa
     3721 gaacaataac tacagttcca gtccaagact gtgaaaattt atataatttc tttaaaattt
     3781 ccatagattt tccttaatta agtctatttt tagcagattt aactgtgttt tctaaaagca
     3841 tagctatagt cataggacct actccacctg gaacaggagt tatataacta gattttttag
     3901 atacctcttc aaaatccaca tctcctacta tctttccact ttcaagacga ttgattccaa
     3961 catcaacaac aatcactcct tcttttacca tatctgattg aagtaaattc acacaacctg
     4021 ctgctactat aatcaaatca gcttgcctag tataaaggct caaatctttg gttttaatat
     4081 gacaaacgct tactgtagct ccagcgttta aaagcatagt agccatagga cgacctacta
     4141 tatttgaagc acctataata acagcgtctt ttccttctaa atcaatttca taagccttca
     4201 aaagcttcat aactccaagt ggagtacaag gcaaaaaccc actttctaag cctaaattta
     4261 aatatcctac attaatagga tgaaagccat caacatcttt actacttata atactttcaa
     4321 gtattaaatc tttacaaata tgaccagata agggaagctg aaccaaaatt ccatgaacac
     4381 tatcatcgtg atttaaggta ttaatcaatg ccaaaagttc attttgtgta gtattttcat
     4441 taagatgata aactaaagat ttaattccac attcttcaca ggctttagcc ttagatttta
     4501 cataagtttg acttgcagga tcatctccaa ccaagataac agctaaacag ctttcaatcc
     4561 ctttgctttt caaaaattga tttttttctt ttaattcttc tttgattttt gcgcttaaag
     4621 ctttaccatc aagcaaagtc attattttcc ttctataaat ttaatcactt ttttaaagta
     4681 aaaattgtat catattaaaa cttcattaac aaggtgaaac tttgaaaatt gtcttaatgt
     4741 tttttttatt tagtatcagt ctttttggtg ctgattttat cactcttaaa gaatactcta
     4801 aaatgcttta tgaaaatcca aggggcatta gttgtaaaga atgtcatgga gcaaatggaa
     4861 gcgaacaaat tttaggatat tatatgaaaa atggtattaa aacagcttat aaagttccaa
     4921 gtatacaaaa tcttagtttt gagaatttta aaaattctct taatcagagt aaagacgcaa
     4981 aatcaatcat gccaaattac tctttaacaa atgatgaaat tgtaacttta tataattaca
     5041 tcaagcaatt tagcaaggaa gaaaaatgac aaacaaaaaa gcttttaaag aagcgtgtaa
     5101 attcatcgca ggtggtgtaa attctccagt tcgtgctttt gcaaatgttc aaagtgagcc
     5161 aaaatttatt tctcatggaa aaggtgctta tattttcgat atagatggaa attcttatat
     5221 agactatgtt caaagctggg ggcctttact ttttggacat tgtgataaag atatacaaaa
     5281 agcttgtcaa aaagcacttc ataaaggttc aagttttgga gctccaactt tattagaaac
     5341 tgaacttgcc aagcttgttt tatctgattt tcctcattta gaaaagatcc gctttgtaag
     5401 cagtggaaca gaagcaacca tgagtgctat tcgtcttgcc cgtggtttta ctaaaaaaga
     5461 taaaatttta aaatttgaag gatgttatca cgggcattct gattcattat tagtgagtgc
     5521 aggaagtggt gctgctactt ttaactctcc tagttctttg ggtgttttag aagatgtagc
     5581 taaacacact ttagtagcta aatataatga tataaatagc gttaaagagc tttttgaaaa
     5641 aaataaagat attgcatgtg ttatcattga gcctattgct ggaaatatgg ggttagttcc
     5701 agctaaacaa gattttttag aagaacttgc taagatctgt aaaaacaatc aaactctgct
     5761 gatttttgat gaagtaatga gtggatatag agcatcttac cttggttcct atggaatcaa
     5821 tcatatccaa gcagatataa ttacttttgg taaggtaata ggaggcggtc tacctgcagc
     5881 agcatttgct tctagggctg aaattatgaa tattttaagt cctttgggtg gagtttatca
     5941 agcaggaact ttaagtggaa atcctttggc aatggctgca ggtatagcaa gtcttacaaa
     6001 agccaaaaag aaaaccaagc tttatgacaa acttggaaaa ttagcaaaaa aacttaccca
     6061 aggaatgaaa aaattagcag atgaaaaagg acttccactg caagtttgtc atgtaggttc
     6121 tatgtttgga tactttttca ccaaagatcc tgtatcaaac taccaagatg cattaaaatc
     6181 cgatctagca ttattttcaa aatttcacaa aaatatgctt gaaaatggaa tttatttagc
     6241 accttctcaa tttgaaacag gctttatatg ttcaaaaatg gatgataaga ttatagatat
     6301 aacactagag gctgttaggg aaagctttaa aagaatatga gcaatatttt aaaagaagaa
     6361 aaaaatcact tagaaaattc caacagcaaa agacaaaaaa tcattcgcaa aactcttgaa
     6421 gctgcggatg gtttaagtct cggtatctct atggttgttg ctgtatttat aggtgtggga
     6481 ataggatatt tgcttaaaaa atttactcct tatccttggc ttttttggct tggagttttt
     6541 tgggggatca gtgctgctat acttaatgtt tacaaagctt ataaagttca agtaaaaagc
     6601 tatgaagaat ttaaagaaag agatgagttg atcaaagaaa aaattcaaaa agaaaagaac
     6661 aaataatgga acataaaaaa gctctatttt gtatttttgc cattattcat ttattttttt
     6721 ggatcatatt ttcatcgtta aatcatttta aattagatac atttttaagc tatgaaatag
     6781 ctttttttag tgttttattg attatttttg cttcttattt aaattataaa aaagtcatta
     6841 taaaaaaatc aaaaaattat gaaaaagatt ttaatttcat ttcatcactt tttatcaaaa
     6901 aaaaacaaaa tttatcaaaa attattcatt ttaaagttct aaaagacgat ttaaagccaa
     6961 atgttaaaga gaaaatccat ttttttgcta tgttttttac tctctttaaa ttgatggctt
     7021 atgtaatatt ggttgctgga tttttatttt tacatcgcca agataaatta gatatctttg
     7081 cttatatttg tggaatttca tccttgctag tttgtgtgtt tatttttatt ttatatataa
     7141 aaaagtatga gtccaaaaaa aattattaaa tcaatgacag cactttttgc tggtatggca
     7201 tttttatttg caggtaatgc cttgatagta agctctatag gtgttatatt aaaagaaaac
     7261 ggagaaagtt ctttagctgt tggagtagta agttcttgtt tttttgtagg cgctcttatt
     7321 ggaaccatca gtgctcataa aattatttct cgtataggtc atatacgctc ttttgggcta
     7381 tttggtgcta tttttggaat ttcagctatg cttcatacag taagcgaaaa tcttattttt
     7441 tgggctgttt taagattttt cataggaatt tgctactatg gacttttaat ggtcatagaa
     7501 tcatggctta atgaaaaaag caaaaatgcc attcgatcta gaattttagg tttttatgaa
     7561 attgtttttt atcttgcgtt tggtattgga gttttaatca tagcgttaaa tttaagcaaa
     7621 catagtgtat ttatcctcag tgcaacttta attttacttt catctttacc tttaaatcta
     7681 attaaaatca aagaacctgt tttacccgca tcaagtccta tttctatacc taaaattttt
     7741 gatatagctc ctttagctat cgtcacaagc tttatagccg gaatgcttat aaatggcttt
     7801 ttttctatgg catctttatt tatacttttg caaggttttg atacaaaagc ggtttcttat
     7861 tttatatttt gtggggtttt aggtggtttt attgcacaaa ccatcatagg aactatttca
     7921 gacaaacttg gtcgcaaatt tgccattatc acttgtgcaa gtataggatt tatcactatg
     7981 cttatattta tcttttttaa acttcattta tatatgcaat attttttagg aattactctt
     8041 ggtataggaa tattttgctt atatgcttta gcacttgcta gagcaaatga tgttttagta
     8101 agcaaaaata aaggtgtaga gttaggtcgt ggggttcttt tttgttattc tttgggctct
     8161 ttgtttggcc ctttaatttt aggtttttta atgcaatatt ttgaaatcaa aggttttata
     8221 tggttttata tagtttcttt agcattttta attctttttg ctatcaataa accaaatatt
     8281 ttaaataaaa aatttaagaa aaagcctgga aatatggtga tatttgatga ttaatactca
     8341 actagcaagt caaattgcca atacgcaaaa aaatgattta aaagtagata actctgcttc
     8401 aaaagataaa acaaatttaa aagacaatcc aaaagaagca cttgcacaag ctttaaagca
     8461 aaatttaggt ttaagcaagg acgctagtag tgaggaaata ctagcaaaat ttgttcaaaa
     8521 tgaaacaggt accaaattaa aagaacttgt taataaactt ttagatcaaa tcaatgctca
     8581 aaaaaatccc gattcccctg tacttaaaca aggaaaaaat ttaaatttag ctcctaattt
     8641 tgctaatgaa ttaaaaatct taagtacaga acttgcaaaa agtgatactt ttacacaagt
     8701 tttagacaga ttaaatcaaa ttttaaaacc tgccagtgaa ataaaaaaca ataacttagc
     8761 tcctttgttt aaaaattcag gcgtattttt agaagctaaa ttaaaagatg ccctaaacga
     8821 agaattacta cccaaaagtt ttcactctct tttaagtaca atcaaaggtc ttagtagcga
     8881 aaaactaagc gttcagatag cccagcttgc aaatacaaat ttaagcccaa aagacacttt
     8941 aaaagaatta aaaaatatta ttaattctag caaaaatgaa aataagcaaa ttttaaatca
     9001 aagttctttt aaagcacttt taaatttaag ttctaaattg gaaaatttta aaaattatat
     9061 aagtaaaaat cccagtcatg ctcaagaaaa aatcacccct atagctaata aaattttaaa
     9121 agaattaaat tccatcaaaa atgatttttt caaagctctt aataagccag aaaatttaat
     9181 gataaaagat ccaaacatcc ttaagcaaac tgctaccgcc tttgaaaaac ttgaaaatac
     9241 tttaaaaaat atactaggca atcaagcttc taaaatacaa gataaagaaa atattttaga
     9301 aaatctttta agtaacaaag aaaatatcaa ggaagaaaaa cttaatcata atacaaaaaa
     9361 ccaagatgaa gaaaaacata taaaagcatc aaaagaagat gaaaatttag attctggtat
     9421 aaaaacccat gaagaagata cccaagatac aaaaaatgat attcaaaata atgaaacaga
     9481 aaataagcca gacaatgata taaaaaattc tactccaaac caagaaaaaa ttaaagatga
     9541 aaaacaagaa aaatcaaaag aaaatatcaa agaaaatcca aaattttatg aaacaaaaac
     9601 agaaaacaaa acttcaatca atacaaatac caacacttca aatcctaaca caaacaatac
     9661 gcaaaattta aataatactc aaaatattca atctaacaat aaccaaacta tgcaaaatat
     9721 ttttaaaaat caggaattta taaaacaaaa tattgtaaaa aatttagcat ttaatgtaga
     9781 aaatttagat ctagaacaag tgcaagattt aagtaaaaat ttaagcaatc tttctcgtag
     9841 acttaatgaa agcttaaaag aacttgaacc ctatactcaa aatgccaagc ttaatcaagc
     9901 agaacttaaa aatctcgaac acaaactcaa tctttctatc aaagatctag cacaaattaa
     9961 accaaaaaca gaacaagata tagctgaatc tttacatcat gatgtaaaat caacactttt
    10021 gcaaatttca aatttagcta aaaatgaagg caatgaagct gtatacaatc aagctaatcg
    10081 tcttttagcg caaattgaaa tcaatcagct tatgtcttta gctaatgatt ctatcaatac
    10141 ttatctgcct ttttcttggg atgatttaaa tgattctaaa attatgttta gacgcggaaa
    10201 aaaggacaaa ttttttgctc agattaaact cgaatttgca aaacttgggg atttagaaat
    10261 tc
//
LOCUS       DBBXPZ010000062        10190 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.064, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000062 DBBXPZ010000000
VERSION     DBBXPZ010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10190)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10190)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10190
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.064"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..635)
                     /locus_tag="ACJFD7_001303"
     CDS             complement(<1..635)
                     /locus_tag="ACJFD7_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(A) polymerase"
                     /protein_id="HGG0860107.1"
                     /translation="MDLKSLENNRLYILKRLGILKFLSIIEALLVGFLAFVFIRDALI
                     AVILAVFVGVFFFRFTAKKLKLAQKELQINALNLFLRRFGAKFKKQSLSQKDFLKLGL
                     TKDLKEFKSQNCFEFKDFKIYDIQFLDENKRFFCGILLEILSANKNPSFENEEQIYIK
                     LQDKNFTLNHIFSKENHYLIATLSNPFFIDVKKDLESNFKDLEENLNSIKN"
     gene            complement(635..2443)
                     /gene="typA"
                     /locus_tag="ACJFD7_001304"
     CDS             complement(635..2443)
                     /gene="typA"
                     /locus_tag="ACJFD7_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HGG0860108.1"
                     /translation="MENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDS
                     NDIEKERGITILSKNTAINYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQE
                     GVMPQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFA
                     IVYAAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGTNDNPLQLQVFTLGYDNFVG
                     KIGIARIFNGVVKKNQSVMLAKADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIA
                     GFEALDVGDSVVDPNNPMPLDPLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERL
                     EAEMKTNIAMKYESTGEGKFKVSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDG
                     VKTEPFEHLVIDVPEEFSGAVIEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFR
                     SQFLTDTKGEGVMNHSFLEFRPFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLF
                     IEPQTKVYTGMIIGEHSRPNDLDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERAL
                     EWIEEDELVEVTPVNVRVRKRYLDPTQRKRMEKAKS"
     gene            2578..2901
                     /locus_tag="ACJFD7_001305"
     CDS             2578..2901
                     /locus_tag="ACJFD7_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860109.1"
                     /translation="MSKPLNEEIFIEFKSDLAERKNEVLLQVLELLETFRSDKNEKMA
                     RISSELTEILENEENLEKILNAKNLEELLNILIALNEDKMIKVYEDSYLKEKFPNVMV
                     DQFLK"
     gene            2919..4712
                     /locus_tag="ACJFD7_001306"
     CDS             2919..4712
                     /locus_tag="ACJFD7_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HGG0860110.1"
                     /translation="MMSNLAPQNDVLNLTPSKTSNTSSSFSKTSKNKEHESSDSKNST
                     QDDTESFLNSLLNSINETNEFLPDHMKISQKEVVNEAMSRLQKGAFDESDKISIFESA
                     SFMQILSLLDKLKTDTADVKLANLSTQLSSLIKTEANFNALKGASNLSELLDIAKDLG
                     LNVKNIKVDRLLDLKATFPNLDKADFFKGAVDNVFKEIINNKISNVSKNLNHNLENTT
                     HTTSTHSMQKTNSKDSGSLLSQTLKNLDSILSSKESKHEKNDKVKSKIEEDTTDAKNT
                     LKNIKNDEFAKNLTEELNIKDKKNQDNLNKESKDLNKDFNKELNKNQEKNNLNQENIQ
                     DQNKNLKNNDQNLNLDKNLNKEIVKDTQKLVSNLTQKDFNLNKEPKNNNKENKDIKQN
                     FFDQKLNFENLNKTQVVQNKENNANFNNNTTNKETFTQEQTKTHSENVDKNSLDELNS
                     LVKDLNKVTQNNARNITPKETLQYFSQDLKEAVDQYKAPITKLSITLNPNNLGEVEVT
                     LIQRGNNLHINFNSNTNAMNLFIQNQAEFKNSLVNMGFTGLEMNFSDQGKREQNQNQG
                     KNRSGYGFKDALDGKNESEKVNLELVLAKYF"
     gene            4766..5650
                     /locus_tag="ACJFD7_001307"
     CDS             4766..5650
                     /locus_tag="ACJFD7_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HGG0860111.1"
                     /translation="MISSSDWNLNTTATTSGTTSSGSTSGTTRTDSSSSSGIVSNPNA
                     TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQK
                     LSDSFSTSMSTSALGAIGKMATVSDNKIKLTGADELIALKMYLPEDSDENGVTLEIYD
                     SNNKLVFSEKSDAKSISQGLFTMEWPGRNNDGVYAGDGEYTVKMVYNNKNGEKITANY
                     GTYPIEGVVFKDGVAYAKMAGQEVPFDAIQEITDYKLGSSSSTGGSGSSGDSSGGSSD
                     GDSSGSGSTEDGDKEEKA"
     gene            5654..7291
                     /locus_tag="ACJFD7_001308"
     CDS             5654..7291
                     /locus_tag="ACJFD7_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HGG0860112.1"
                     /translation="MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDI
                     FYTTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGN
                     AYYTRNGSFRRDANGYLVDSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNN
                     GFTVNSNNSFSIGTTASQGAIKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDP
                     SKFNITKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFK
                     SNELDLKGLDENSIKLDTAQISTEQQKANKDILESPIYNADGSKSTLRVTLERVLPQE
                     GDNIQYKAIAQIYDSNGNAVGNPTEGNMVFDKNGALLQNNITSIANPNGGTINIDLGS
                     PYDANKPGSGYSGIYIKQGVEKNVVTQQDGVAEGFFEQYNISDDGSIVAQFSNGKNAI
                     VGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKDGQVVNTAKFKGGFLEQSNVD
                     LSAELSNLIVTQKAFDASSKSITTSDQMIQKAINMKR"
     gene            complement(7295..9166)
                     /locus_tag="ACJFD7_001309"
     CDS             complement(7295..9166)
                     /locus_tag="ACJFD7_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein A"
                     /protein_id="HGG0860113.1"
                     /translation="MNFQVKTLETFNPFESLNHEQANTEQILDFRVIDFKLLCSSVKP
                     AKTKTYERKDFDLFYADDFFVKNYNTIVQKFLIEIYPKTQSFPFTVKLRSNSNLTHLK
                     ASINLTENFKYYPNLKFDILQNIYKIMIKQKFLILRLDKNLFDKIDDFILSIQKSPSI
                     KEIELEIAKGVDKIEHKSDEIIYHRDVNEECFDENINYDEGNYCKPIEKNELLFEYIY
                     RILGKEGRNLRGEILHLNPIAFLDNPFIIKDESIYTEELEDRIKYFSANYGFLNKDHT
                     GYCIANNLKLSQIGLKTTGSIKTNTDENINLEITNFDISDDAIKSGIVNVQASNIKVN
                     GNVGATKLYGKNISIKGLTHAKSEIFAQDIFITTHKGTLQADTVYIKNLENGTIIAKN
                     VFVENCMGGKIEAENIYICNLLTDNTLYPRKNLIITNNIKFKNNIVVSPLVSIENNSD
                     TECENLKNLSLKIKSKLDDTISKMQNYYDYLIKNQIKIIKLQKTKNPSAIEMKFSNLY
                     HDIIKKYNHLSISYKKLVKLKYQIDAKLNFLNEMVYNVKIYIKAENIGEDNFLKFYPN
                     TNTNLELKHHINLKDYEKVLYLEKGQQVSYIKSSHNYSESDIEEIKIIFEKLEKDNS"
     gene            complement(9123..9887)
                     /locus_tag="ACJFD7_001310"
     CDS             complement(9123..9887)
                     /locus_tag="ACJFD7_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin family protein"
                     /protein_id="HGG0860114.1"
                     /translation="MEVKWSRDFSIKNMQLDKQHELIFEITNLANDLALNIQDNNTQH
                     KNDLKQILVKLFQYIKIHFKDEEKFMESIDFPLIEEHKKSHQILVEKTKELLEHSDNI
                     VKMSQELSILTKDWILDHFANEDLWIANFTKKTLHLQEIHYTLEQYIKLKSIKQDLRA
                     EKTHDYICNCSLRIHAVPQTIHQELISKENTLKCEKCGQILVHLDYFDLNQNFEKFNA
                     TFEDALQNHHFTTQKNDMGGGIDEFSSKNLRNFQSF"
     gene            10067..10164
                     /gene="ffs"
                     /locus_tag="ACJFD7_001311"
     ncRNA           10067..10164
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="ACJFD7_001311"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
BASE COUNT         3515 a         1481 c         1591 g         3603 t
ORIGIN      
        1 ttgtttttta tagaatttag attttcttct aaatctttga aattgctttc taaatctttt
       61 tttacatcta taaagaaagg attgcttaaa gtagcaataa gataatgatt ttctttagaa
      121 aagatatgat ttaaagtgaa atttttatct tgaagtttga tataaatttg ctcttcattt
      181 tcaaagctag gatttttgtt tgcacttaaa atttcgagca aaattccgca aaaaaagcgt
      241 ttattttcgt ccaaaaactg aatatcataa attttaaaat ccttaaattc aaagcagttt
      301 tgacttttaa attctttcaa atcctttgta agtcctaatt ttaaaaagtc tttttggctt
      361 aaactttgct ttttaaattt tgccccaaaa cgacgcaaaa acaaatttaa agcattaatt
      421 tgtaattctt tttgtgcgag ttttagtttt ttagctgtaa aacgaaagaa aaaaacacct
      481 acaaaaacag ctaaaattac tgcgattaag gcatctctta taaaaacaaa ggctaaaaaa
      541 cctacaagta aggcttcgat aatgcttagg aattttaaga ttcctaagcg tttaagtata
      601 taaagtctat tattttctaa gctttttaaa tccattaaga ttttgctttt tccattcttt
      661 ttctttgagt tgggtcaaga tagcgtttgc gaacacgcac atttacaggt gtaacttcta
      721 caagttcatc ttcttctatc cactctaaag ctctttcaag acttaatttt ctaggtggca
      781 caagtttgat tgcatcatcg cttccacttg ctcttacatt ggtaagattc tttcctttga
      841 taggattaac atctaaatca tttggacgag agtgctcacc tataatcata ccggtataaa
      901 ctttagtttg aggctctatg aaaagtactc cacgctcttg aaggttaaac aaagaatacc
      961 ctaaagccac gccattttcc atagaaatta acgctccatt attacgcttt tcaaccgcac
     1021 cgctaaaagg acggaattct aaaaagctat gattcatcac gccttcgcct ttggtatcag
     1081 ttaaaaactg acttctaaaa cctataagtc cgcgtgctgg aatttcaaac tcaagccttg
     1141 tttgtccatc gcccgttggt gccatggttt tcatttcagc ttttcttttg ccaagttttt
     1201 ctattaccgc accgctaaat tcttcaggca catcgataac taaatgttca aaaggttctg
     1261 ttttaactcc atcttcaacc tttacgataa cttcaggtct tcccatacaa aattcaaaac
     1321 cttcacgacg catattttca gctaaaatag tgatttgaag ttcgccccta ccgcttactt
     1381 taaatttgcc ttcgcctgtg ctttcgtatt tcatagcaat attagttttc atttcagctt
     1441 ctaaacgttc agcgatttta tttgaagtta catgttttcc ttcagttcct gctaatggtc
     1501 catcatttac agaaaatact atgcttaaag tcggctcttc aatgtgtaaa ggatcaagtg
     1561 gcataggatt gtttggatct acaacgctat cacccacatc taaagcttca aaacctgcta
     1621 tagctacgat atctccactt cctgcttctt caatatccat tttttctaag cccataaagc
     1681 caatgagttt tgaaattcta ccatttactt tggtgccatc agcttttgca agcattacgc
     1741 tttggttttt cttcacaacc ccattgaaaa ttctagcaat gcctatttta cctacaaaat
     1801 tatcataccc taaagtgaaa acttgaagtt gtaaaggatt gtcatttgtg ccacttggtg
     1861 ctggaacgcg ttcaagtatg gttttaaaaa gtggctccat attatcactt tcatcgttta
     1921 gatcaagctt agcataacca ttttttgctg cagcataaac tatggcaaag tcaagttgct
     1981 catcgtttgc atctagggct acaaaaagat caaaaatttc attgatcact ctttcaggat
     2041 cagcagctgg tttgtcgatt ttgttgatta caactatagg tttaagccct aaagataaag
     2101 cttttttaac cacgaattta gtttgtggca taacgccttc ttgagcatcc accaaaagca
     2161 aaactccatc aatcattttt aaaacgcgtt ctacttctcc gccaaaatca gcatgccctg
     2221 gagtatctat gatgttgatt tttgtacctt tgtaattgat cgctgtgttt tttgaaagta
     2281 tggtaatgcc acgttctttt tctatatcgt tgctatccat aacgcgttct gaaatttgtt
     2341 ctctttcgct aaaggtgcct gattgtttta ataattcatc taccatagtg gttttaccat
     2401 ggtcaacgtg agctataact gctatatttc taatgttttc caaattttct tctccaaagc
     2461 taaattttta aaagcttaga ttatacaaaa atttaactta aactataaag catcaaaact
     2521 tggaacactt cttgctttaa agacttgtga aattaaaatt ttaaaaagga agttaaaatg
     2581 tcaaaaccat taaatgaaga gatttttatt gaatttaaaa gcgatttagc tgagagaaaa
     2641 aatgaagttt tacttcaagt tttagaactt ttagaaactt ttagatcaga taaaaatgaa
     2701 aaaatggcaa gaatttcaag tgagcttaca gaaattttag aaaatgaaga aaatttagaa
     2761 aaaattttaa atgctaaaaa tttagaagag cttttaaata ttttaattgc tttaaatgaa
     2821 gataagatga ttaaagtata tgaagattct tatttgaaag aaaaatttcc taatgtaatg
     2881 gtagatcaat ttttaaaata attttttttg aaggaaaagt gatgtcaaat ttagctccgc
     2941 aaaatgatgt tttaaatctt acgccgagta aaacttctaa tactagtagt tcctttagta
     3001 aaactagtaa aaataaagaa catgaaagta gtgatagtaa aaattcaact caagatgata
     3061 cggaaagttt tttaaattct ttgcttaatt ctatcaatga aaccaatgaa tttttacctg
     3121 atcatatgaa gatcagtcaa aaagaagttg ttaatgaagc gatgagcaga cttcaaaaag
     3181 gagcttttga tgagagcgat aagataagca ttttcgaatc tgcttctttt atgcaaattc
     3241 tttctttgtt agataagcta aaaacagata cagcagatgt taaactagca aatctttcta
     3301 ctcaactttc aagtcttatt aaaacagagg ctaattttaa tgctttaaaa ggtgcatcaa
     3361 atcttagtga gcttttggac atagctaaag atctgggctt aaatgtaaaa aatattaaag
     3421 tagatcgtct tcttgatctt aaagcaactt ttccaaattt agataaggct gattttttta
     3481 agggtgctgt ggataatgtt tttaaagaaa tcatcaataa taaaatttcc aatgtgagta
     3541 aaaatttaaa tcacaattta gaaaatacaa ctcatactac aagcactcat tctatgcaaa
     3601 aaacaaattc taaagatagc ggttctttgc tttctcaaac tttaaaaaat ttagattcca
     3661 tactttcatc caaagaaagc aaacacgaaa aaaacgataa agttaaatca aaaatagaag
     3721 aagataccac agatgctaaa aatactttaa aaaatatcaa aaatgatgag tttgcaaaaa
     3781 atttaacaga agagttaaat ataaaagata aaaaaaacca agataattta aataaagaaa
     3841 gcaaagactt aaacaaagat tttaataaag agttaaataa aaatcaagaa aaaaacaatt
     3901 taaatcaaga aaatatacaa gatcaaaata aaaatttaaa gaacaatgat caaaatttaa
     3961 atcttgataa aaatttaaat aaagaaattg ttaaagatac tcagaaatta gtttcaaatt
     4021 taacacaaaa agattttaat ctaaataaag agcctaaaaa caacaacaaa gaaaataaag
     4081 atataaaaca aaatttcttt gatcaaaaat taaattttga aaatttaaat aaaactcaag
     4141 tagttcaaaa caaagagaat aatgcaaatt ttaataataa tactactaat aaagaaactt
     4201 ttactcaaga gcaaacaaaa acgcacagtg aaaatgtaga taaaaatagc ttagatgagt
     4261 taaattcttt agtcaaagat ttaaataaag taacacaaaa caatgctcgc aatatcactc
     4321 ctaaagaaac tttgcagtat ttttcacaag atttaaaaga ggctgtggat caatacaaag
     4381 cgcctattac taaacttagt atcactctaa atcctaataa tcttggagaa gtggaggtaa
     4441 ctttgataca aagaggtaat aaccttcata tcaatttcaa ctccaatacc aatgcaatga
     4501 atttgtttat ccaaaatcaa gccgagttta aaaattctct tgtaaatatg ggatttactg
     4561 gacttgaaat gaattttagt gatcaaggta aaagagagca aaatcaaaat caaggaaaaa
     4621 atcgtagtgg atatggtttt aaagatgctt tagatggaaa aaatgaaagt gaaaaagtca
     4681 atctagagct tgttttagcg aagtattttt aaattggaac acttattgct taaataataa
     4741 aaaactaaat aaaaaggagt ttataatgat atcatcatcg gattggaatt taaataccac
     4801 tgctacaact tcaggtacta cttcttcagg aagtactagt ggaacaacta gaacagattc
     4861 aagcagtagc tcaggaatag tgagcaatcc aaacgctacc ttagataagg atgcgttttt
     4921 aaaacttctt ttgatagagc ttcaacatca agatccaaca gatcctatgg atagcgataa
     4981 aatgcttact caaacttcgc agcttagcgc acttgaaatg cagcaaaata ccaatacaac
     5041 tatgcaaaaa atggttgaaa ctatgcaaaa gctttctgat tcttttagta caagtatgag
     5101 tacttcagct ttaggggcta ttggtaaaat ggcaactgtt tcagataata aaatcaaact
     5161 tacaggtgca gatgagctta tcgctcttaa aatgtatttg cctgaagatt ctgatgaaaa
     5221 cggtgttacg ctagaaattt atgatagcaa taataaactt gttttcagtg aaaaaagcga
     5281 tgctaaatct atttctcaag gtttatttac tatggagtgg ccaggaagaa ataacgatgg
     5341 ggtttatgca ggtgatggtg agtacactgt taaaatggtt tataataata aaaatggtga
     5401 aaaaatcact gcaaattacg gaacttatcc tatcgaaggt gttgttttta aagatggtgt
     5461 tgcctatgca aaaatggctg gacaagaagt tccttttgat gcgatacaag aaataacaga
     5521 ttataagctt ggttcatctt catctactgg aggaagcggt tcaagtggag actcaagtgg
     5581 tggttcaagc gatggagatt cttctgggtc tggatctaca gaagatggcg acaaagagga
     5641 aaaggcataa gccatgatga attcatttta taatgggatt tctggagtaa aaagcaatag
     5701 ctttggtatt gatatcactg ctaataacat agcaaatgtc aataccacgg gctttaaata
     5761 ctctgatgct caatttaaag atatttttta tactaccata acaacccaat caaccaaccc
     5821 tgctcaaggt ggttatggta gcggtgcagc atcttctcaa gttgttttcg aacagggttc
     5881 tcctgttgca agtgatggcg aatttgatgt ggctttgcaa ggaaaaggat tttttggggt
     5941 tttaggggct gatggcaatg cttactatac tagaaatgga tcatttagaa gagatgccaa
     6001 tggatatttg gtagattctt atggaaattt tgttttagga acaatgaatc ctgcttttac
     6061 tggtattaac tatagcgata gagttgctgg gcttatgggg gattatctta acacaggaac
     6121 tccggtaaat aatggtttta ctgtaaattc aaataattct ttcagtatag gcacaaccgc
     6181 ttctcaaggg gctattaaag tacctgtgaa tatgtattta cctcctcaag taactcaaaa
     6241 tgtaaaatgg agtggaagtt taaatactaa cacaacaaca gaagtagtta aagtagatct
     6301 tgatcctagt aaatttaaca ttacaaaaac tgaagatgga aaatatgtag ttagtggtag
     6361 tgttagcaaa gaagatgtgt ttagtgctaa agcgggtgat aggattattt taaatttcac
     6421 tgatgataat ggcgtaaaaa caagctttga agcgacttta gatgaaaatc taaattttaa
     6481 aagtaacgag cttgatttaa aaggattgga tgaaaatagc atcaagcttg atacagctca
     6541 aatttcaaca gagcaacaaa aagccaataa agatatttta gaatccccta tttataatgc
     6601 agatggaagt aaaagcactt taagggttac acttgaaaga gttttaccgc aagaaggcga
     6661 taatatacaa tataaagcta ttgcacaaat ttatgattct aatggcaatg ccgtaggcaa
     6721 tccgactgaa ggaaatatgg tttttgataa aaatggtgct ttgcttcaaa acaatattac
     6781 aagcattgca aatccaaatg gtggaacaat taatattgat ttaggttctc cttatgatgc
     6841 taacaagcct ggttcgggtt atagtgggat ttatattaaa caaggcgtcg aaaaaaatgt
     6901 agttacacaa caagatggtg tagctgaagg gttttttgaa caatataata tatccgatga
     6961 tggaagtatt gttgcgcaat ttagcaatgg taaaaatgcc atagttggaa agcttgcttt
     7021 atataatttt atcaatgagc aaggattagt tgctatggga gataatattt ttgcagcaac
     7081 ggcaaatagc ggtgatgcaa gttttattat gaaagatggt caagttgtta atacagctaa
     7141 atttaaaggc ggattcttag aacaatcaaa tgttgattta agcgcagagc tttcaaacct
     7201 tatcgtaact caaaaagcct ttgatgcaag ctcaaaaagt atcactacaa gtgatcagat
     7261 gatacaaaaa gccattaata tgaaaagata attcttagga attatctttt tctaattttt
     7321 caaaaataat tttaatttct tctatgtcgc tttcgctata attatggctt gatttaatat
     7381 aacttacttg ctgtcctttt tcaagatata aaaccttttc atagtctttt aaatttatat
     7441 gatgttttag ttcaaggttg gtgtttgtgt taggataaaa ttttaaaaaa ttatcctctc
     7501 cgatattttc ggcttttatg tatattttta cattgtaaac catttcattt aagaaattta
     7561 attttgcatc aatttgatat tttaatttta caagtttttt atacgaaatg ctaagatgat
     7621 tgtatttttt tatgatatcg tgataaagat ttgaaaattt catttctatg gcgctaggat
     7681 ttttagtctt ttgaagtttg atgattttga tttgattttt gattagataa tcatagtaat
     7741 tttgcatttt gcttatggtg tcatcaagct tactttttat tttaaggctt agatttttaa
     7801 gattttcgca ttctgtatct gagttgtttt caatagaaac tagtggtgaa actacgatat
     7861 tgtttttaaa ttttatattg tttgttatga ttagattttt tcttggatat aaagtattat
     7921 ccgttagtaa attgcaaata taaatatttt ctgcttctat ttttccaccc atgcagtttt
     7981 caacaaatac atttttagct ataattgtcc cattttctaa attttttata tatacagtgt
     8041 cagcttgcaa agttcctttg tgtgttgtaa taaaaatatc ttgtgcaaaa atttcgcttt
     8101 ttgcatgagt taagcctttg atactgatat tttttccata aagttttgtt gctccaacat
     8161 tcccatttac ttttatattt gaagcttgaa catttacaat acctgattta atagcatcat
     8221 cacttatatc aaaattagtg atttctaagt ttatattttc atcggtattt gttttgattg
     8281 aaccggttgt tttaagccct atttgtgata attttaaatt atttgcgatg caatatcctg
     8341 tatgatcttt gtttaaaaat ccataattgg cactaaaata tttaattcta tcttctaatt
     8401 cttctgtgta aatgctttca tcttttatga taaaaggatt atcaagaaag gctattggat
     8461 ttaaatgaag tatctctcct cttaaatttc gtccttcttt tccaagaatt ctataaatgt
     8521 attcaaaaag tagctcattt ttttcaatag gtttacagta gtttccttca tcatagttaa
     8581 tattttcgtc aaaacattct tcgttaacat ctctatgata aataatttca tcacttttat
     8641 gttcaatctt atctacacct ttggcaattt caagctctat ttctttaata gatggacttt
     8701 tttgtattga taagataaaa tcatcaatct tatcaaataa atttttatca agtcttaaga
     8761 ttaaaaattt ttgtttgatc attattttgt agatattttg caaaatatca aattttaaat
     8821 tagggtaata tttaaaattt tctgtaaggt tgatactggc ttttagatgg gttaggttgg
     8881 agttggatct aagtttgact gtaaaaggaa aactttgggt ttttgggtaa atttctataa
     8941 gaaatttttg cactatggta ttgtagtttt ttacaaaaaa atcatctgca taaaataagt
     9001 caaaatcctt tctttcataa gtttttgttt ttgctggttt tacactagaa cacagaagtt
     9061 taaaatctat aactctaaaa tcaagaattt gttctgtgtt tgcttgttca tgatttaaac
     9121 tttcaaaagg attgaaagtt tctaaggttt ttacttgaaa attcatctat cccccccccc
     9181 atatcatttt tttgagtcgt gaaatggtga ttttgtagtg catcttcaaa agtagcattg
     9241 aatttttcga aattttgatt caaatcaaaa taatccaaat gaactaaaat ttgcccacat
     9301 ttttcgcact ttaaggtatt ttctttgcta ataagctctt gatgtatagt ctgtggaact
     9361 gcatggatac gcaaagaaca attgcaaata taatcatgag ttttttcagc tcttaggtct
     9421 tgtttgattg attttagttt tatgtattgt tctaaggtat aatggatttc ttgaaggtgt
     9481 agggtttttt ttgtaaaatt agctatccat aaatcttcat tagcaaaatg atctaaaatc
     9541 caatctttgg ttaatatgga aagttcttga gacattttta caatattatc tgaatgctct
     9601 aaaagctctt tagttttttc tactaatatt tgatgagatt ttttatgttc ttcaatcaaa
     9661 ggaaaatcaa tgctttccat aaatttttct tcatctttaa aatgaatttt gatgtattga
     9721 aatagcttta caagaatttg ttttaaatca tttttgtgtt gtgtattatt atcttgaatg
     9781 tttagagcta aatcatttgc aagattggta atttcaaaaa ttagttcgtg ttgtttgtct
     9841 aattgcatat ttttaatgct aaaatctcta ctccatttaa cttccatatt tttccttttt
     9901 ggatgtaata attattttta tatcgtattt tttgaaaata aaataataat tttacaaatg
     9961 aatttttaga attcttataa aaacaatgga ttgattgcaa atttatatat tgaatcttaa
    10021 caactcaagg ctttttaagt atattatgat ataattttta agccttttct tagacctgtg
    10081 caatgctatt tttaagcacc gcttcagggt gggaacacag cagagcactt gattttagtg
    10141 tgtgccgcag ttatctgggg aagggtttta ttcattttaa aattcccatt
//
LOCUS       DBBXPZ010000063        10050 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.065, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000063 DBBXPZ010000000
VERSION     DBBXPZ010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10050)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10050)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10050
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.065"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(158..2770)
                     /gene="flgE"
                     /locus_tag="ACJFD7_001312"
     CDS             complement(158..2770)
                     /gene="flgE"
                     /locus_tag="ACJFD7_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0044781 - bacterial-type flagellum
                     organization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HGG0860115.1"
                     /translation="MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTM
                     FSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFF
                     MVSDDGGLTRYLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFID
                     PGMHIPAAQSTEVAIKANLNSGLNIGTASRPLYSLDSVHGFNQKTGETKDENDAGTTQ
                     FYTTSKNAVEVTEKGVDAGSLFNANGTGLNLRDGQGIWVSYADAKYSTNSLGYNAFNS
                     NLQQNQTAAFWGNGNQKTRLDIVINGVVIQNDTIGSIDEAIAYINTFTAPTDAREGTG
                     VRAVKNADGSGIDFVNDNADGTTDNMKNINLVVNANNTAGELWNAVWNNNTQTFSFNQ
                     GNGGQQPAINKNGSSLWTATGQNLTPAPPAPGPITQIQFTGPANAKIITAHKYIYSSS
                     PQTLPPMYNPDGGFNYIPGTPGNPPTWNGTDAATIGSQNYYNAVMNGSLLNTNIRTFH
                     TTEDLRELLQRDARYGVDYDGSGTFAAADVNENVKVVVNSSGAFSLTNVNETSNSPTL
                     VTGQGALTFGSHNMNFNITAYTDERGTVSTNDAFTKIFKGLDGSFPAGNQVKQSELLK
                     LSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPNN
                     IIVGTARFNNDGSLSNYNPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTL
                     TGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGN
                     LFKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTIS
                     TSDQMLQTLIQLKQ"
     gene            complement(2974..3456)
                     /gene="ruvC"
                     /locus_tag="ACJFD7_001313"
     CDS             complement(2974..3456)
                     /gene="ruvC"
                     /locus_tag="ACJFD7_001313"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HGG0860116.1"
                     /translation="MNLKILGIDPGSRNCGYAIIEANKGKNILIEAGLIKIKPSTLQY
                     QITELCEGLDLIFKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAE
                     YTPLQVKKAVTGKAKATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHAANLRVRV
                     "
     gene            3552..4874
                     /gene="dnaA"
                     /locus_tag="ACJFD7_001314"
     CDS             3552..4874
                     /gene="dnaA"
                     /locus_tag="ACJFD7_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HGG0860117.1"
                     /translation="MNPSQILENLKKELNENEYENYLSNLKFNEKQSKADLLVFNAPN
                     ELMAKFIQTKYGKKIAHFYEVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTILN
                     PSFTFESFVVGDSNKYAYGACKAVAHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNAS
                     LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEE
                     FFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIR
                     KKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD
                     HIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP
                     QLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKILVKSQS"
     gene            5034..6101
                     /gene="dnaN"
                     /locus_tag="ACJFD7_001315"
     CDS             5034..6101
                     /gene="dnaN"
                     /locus_tag="ACJFD7_001315"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HGG0860118.1"
                     /translation="MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLI
                     KASDYEIGINYKIKKIRVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLFIRQKS
                     TKYKLPMFNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLD
                     IKTDKINFVGTDTKRLAIYTLEKANNQEFSFSIPKKAIMEMQKLFYEKIEIFYDQNML
                     IAKNENFEFFTKLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEKMKLHF
                     NKDKIIFEGISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIEEEKFTLSVNE
                     PNSAFIVKSQGLSMIIMPMIL"
     gene            6130..8439
                     /gene="gyrB"
                     /locus_tag="ACJFD7_001316"
     CDS             6130..8439
                     /gene="gyrB"
                     /locus_tag="ACJFD7_001316"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HGG0860119.1"
                     /translation="MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVD
                     NSIDEAMAGHCDTIDVEITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGK
                     FDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK
                     KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGKHESFHFEG
                     GISQFVTDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGT
                     HEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKG
                     KLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKE
                     SLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE
                     KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTF
                     FFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEGLNYEGIGM
                     NDLKDYLKIVAAYRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQ
                     GHNILNHYINENEIRAFVQTQNGLEELVINEELFTHPLYEEANYIFDKIKDRGLEFDK
                     DILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSAND
                     TFNLFMGDEVEPRRDYIQAHAKDVKHLDV"
     gene            complement(8465..8806)
                     /locus_tag="ACJFD7_001317"
     CDS             complement(8465..8806)
                     /locus_tag="ACJFD7_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monoheme cytochrome C"
                     /protein_id="HGG0860120.1"
                     /translation="MKKIILILALFLSASWAQNLEINPDTGLIIDPDSPLVEANCLAC
                     HGSNLITNMHASRKAWLAAIRWMQDSEGLWEIEPEDEEKILNYLEKYYGEKYDTRRRI
                     PLAILLQNKTH"
     gene            complement(8809..10047)
                     /locus_tag="ACJFD7_001318"
     CDS             complement(8809..10047)
                     /locus_tag="ACJFD7_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase"
                     /protein_id="HGG0860121.1"
                     /translation="MKQNDQKENRRDFLKNIGLGLFGISVLSNFSFENFLGSKALAKE
                     LPDFKIEGKKDLIYHGEKPLTAETEIYALDSDFTKPENFFVRNNGLPPSLETIKERLH
                     KGWTLEIDGESIINKKSYTIEDLKKKFKTYTYALTVECGGNGRSEVIPSTKGTQWGYG
                     AVACGRWTGVRLKDILKDCGIKNDAVYIGYYGIDTKLNGEETSPISRGVPISKALQDE
                     TLIAWAYEGKDIPLVNGYPLRLVCGGYPASTSGKWLYKISVRNKIHDGEKMEGSYKVP
                     VNPVKPGDFNYKGEMKIIESMPIRSVITNIKNGSEIKANKKFEVRGKAWAGELEVSEV
                     YISNDYGVTWTKAKVEKPLNRLAWQKWSAQISIPTKGYYEIWARAIDSQGNSQPMVLA
                     QWNPGGYINNACHRVNIYGV"
BASE COUNT         3534 a         1650 c         1611 g         3255 t
ORIGIN      
        1 tattgcaact cacccctagc aagagtgagt tagcaataaa ttgaaggcag ttcaagccta
       61 agcctagtat tacaagacta ccaagatagg cttgtaaagc aaggcttgct cccttaaggg
      121 agcaaaaaac aatattttat agaatactaa gcttaaatta ttgtttaagc tggattagag
      181 tttgaagcat ttgatcactc gttgaaatgg tttttgaatt tgcttgataa cctctttgaa
      241 tgataataag ctctgttaaa gaacgactta aatccacatt tgacatttca agagctgagg
      301 ttttcatttc accacgacct cctgttcctg cttcacctac tacgatatta ccactatttg
      361 cagtgacttt aaaaagattt ccaccaattt cctcaagacc tgagttattt gccactgaag
      421 ccattgctat ttttgctaca gcaaaggttt tgccattagt aaattcacct aagatattac
      481 ctttgtcatc cacacggata gcatcaggtt ttaagttacc tgaagtataa ccatcagttg
      541 cctgtcctgt tagagttgaa gcagaatttg agcttacaag gccgtcattg cttccacttg
      601 ttccaaagga aagtttgatt tgttgatttg gtgcggcacc attatttggt gaaaaattta
      661 tcgttcttgg attataattt gacaaagatc catcattatt aaatcttgct gttcctacga
      721 tgatattatt tggtccttcg cctgtagtgt taatctctgc aggttcgggt acacggatga
      781 tcatttgcca ttcattaccc ccatcttgag tggtgctttg cttaacaaac tgcacttcta
      841 aagtatgttt tgaacctaag gaatcataaa tttcaagtcc tgctgaaaaa gcagaaagtt
      901 ttagaagttc actttgctta acctgattgc ctgcagggaa agaaccatca agtcctttaa
      961 agattttagt aaaagcatca ttagtgctta ctgttcctct ttcatctgta taagcagtga
     1021 tattgaaatt catattatga gagccaaaag tcaatgctcc ctgacctgta acaagtgttg
     1081 gactatttga agtttcatta acatttgtaa gagaaaaagc tcctgaagaa tttactacaa
     1141 ctttaacatt ttcattgaca tctgctgcag caaaagttcc acttccatca taatcaaccc
     1201 catatctagc atctctttgt aaaagctctc ttaaatcttc ggtagtgtga aaagtcctta
     1261 tattggtatt taataaagaa ccattcatta ctgcattata ataattttgc gaacctatag
     1321 tagcagcatc tgtaccattc caagtagggg gattacctgg tgtacctgga atataattaa
     1381 aacctccatc gggattatac ataggaggaa gagtttgagg cgaagaacta tagatatatt
     1441 tatgcgctgt tattattttg gcatttgctg gacctgtaaa ttgaatttgg gtaattggcc
     1501 cgggagcagg tggagctgga gtcaaattct gtccagtagc agtccataaa gaagaaccat
     1561 ttttattaat agcaggctgc tgaccaccgt taccttggtt aaaactaaat gtttgagtat
     1621 tattattcca tacagcattc caaagttcac ctgctgtatt gttagcatta actacaagat
     1681 tgatattttt catattatct gtagtgccat cggcattatc attgacaaaa tctatacccg
     1741 agccatctgc atttttaacc gctcttactc ctgttccctc tcttgcatcc gttggtgcgg
     1801 taaaggtatt gatataagcg atagcctcat ctatactacc tatagtatca ttttgaataa
     1861 caactccatt aatcactata tctaatcttg tcttttgatt accattaccc caaaaagcag
     1921 cagtttgatt ttgttgtaaa tttgaattaa aagcattata acctaaagaa tttgtagaat
     1981 atttagcatc cgcataagat acccaaatcc cttgtccatc tctaagattt aatcctgtgc
     2041 cattagcatt aaaaagtgat cctgcatcca cacccttttc cgtcacttct acagcatttt
     2101 tagaagtcgt ataaaactga gtggttcctg catcattttc atctttagtt tcacctgttt
     2161 tttgattaaa accatgcaca gaatcaagag aatacaaagg acgacttgct gttcctatat
     2221 ttaaaccact atttaaattc gctttgatgg ctacttctgt ggattgcgct gcagggatat
     2281 gcataccggg atcgataaaa atattttgcg gagttcttga gctatctata ctttgagtat
     2341 cccagttgat attccaccct tggacaacaa aacctgcatt attaacaaaa tttccataag
     2401 catcgagttt aaaatccccg ctccttgtaa gatagcgagt aagcccccca tcatcactaa
     2461 ccataaaaaa accatcgcca tttatagcca catcagtgtt tttatctgtg gtttgaactg
     2521 aaccttgaga atgaattcta gttgtagaac ttactgaaac gccaagaccg atttgaagcg
     2581 gattagatcc gcctcttcca tcagttggag ctgtagcaat tttcacagtt tggctaaaca
     2641 tagtcccaaa atctgcacga gagtatttaa aaccagtggt attaacattt gaaatgttat
     2701 taccttcaac atccatcgca acttgatgtg cttgtagtcc gcttacgcca gaccaaagtg
     2761 atctcatcat cttaaatcct ttataaaata ttgctttaaa aaatttaacg ctttggcttt
     2821 aaaaaacttt tgcgtttatg tgaagtttac aagcaaattc tgttccaact tttgaaattt
     2881 tttatgaatt ttttaaaaat ttatagaaaa aatttaaagg tattttagga gtttatgaag
     2941 ctttgggctt ttgtgtaata aaaattacta aaatcacacc ctaactctta aatttgctgc
     3001 atgggttaaa gctactgcaa tagcatctgt gatatccaaa ggcttgatat ctttactaag
     3061 tcctaaaagc ctttttacca taaaagcaac ttgttcttta gttgctttgg ctttccctgt
     3121 aacggctttt tttacttgta agggagtgta ttctgcaaaa tctccatgaa tttgaagaat
     3181 ttttaaagat agggctccgc gaaattgtgc gagttttaaa acggtttttg gattgtaagc
     3241 aaaaaagata tcttctatag ccacctcatc aaaagaatga tttttaaaaa tcaagtccaa
     3301 accctcgcaa agctctgtga tttgatactg taaggtactt ggctttatct ttataagtcc
     3361 tgcttctatg agaatgtttt ttcctttgtt ggcttctatg atagcataac cgcaatttct
     3421 tgaacctgga tctataccta aaattttcaa attcatacct tttgaaaaat aaaatacaaa
     3481 agcggatttt aacctttttt tataaaattt aagataaaat ttatacatta tgcaaaattt
     3541 aaagagagat tatgaatcca agccaaatac ttgaaaattt aaaaaaagaa ttaaacgaaa
     3601 acgaatacga aaactattta tcaaatttaa aattcaacga aaaacaaagc aaagcagatc
     3661 ttttagtttt taacgctcca aatgaactca tggctaaatt catacaaaca aaatacggta
     3721 aaaaaatcgc acatttttat gaagtgcaaa gtggaaataa agccatcata aatatacaag
     3781 cacaaagtgc taaacaaagt aacaaaagca caaaaatcga catagctcat ataaaagcac
     3841 aaagcacaat tttaaatcct tcttttactt ttgaaagttt tgttgtaggg gattctaaca
     3901 aatacgctta tggagcatgt aaagccgtag cgcataaaga taagcttgga aaactttata
     3961 atcctatctt tgtttatgga cctacaggac ttggaaaaac acatttactt caagcagttg
     4021 gaaatgcaag tttagaaatg gggaaaaaag tcatttacgc tacaagtgaa aattttataa
     4081 atgattttac ttcaaattta aaaaatggct ctttagataa atttcatgaa aagtatagaa
     4141 actgcgatgt tttgcttata gacgatgtac agtttttagg aaaaaccgat aaaattcaag
     4201 aagaattttt ctttatattt aatgaaatca aaaacaacga tggacaaatc atcatgactt
     4261 cagacaatcc acccaacatg ctaaaaggta taaccgaacg cttaaaaagt cgttttgcac
     4321 atgggatcat agctgatata actccacctc aactagatac aaaaatagcc atcataagaa
     4381 aaaaatgtga atttaacgat atcaatcttt ctaatgatat cataaactat atcgccactt
     4441 ctttagggga taatataaga gaaatcgaag gtatcatcat aagtttaaat gcttatgcaa
     4501 cgatactagg acaagaaatc acactcgaac ttgcaaaaag tgtgatgaaa gatcatatca
     4561 aagaaaagaa agaaaatatc actatagatg acattttatc tttggtatgt aaagaattta
     4621 acatcaaacc aagcgatgtg aaatccaata aaaaaactca aaatatagtc acagcaagac
     4681 gcattgtgat ttacctagct agggcactta cggctttgac tatgccacaa cttgcgaatt
     4741 attttgaaat gaaagatcat acagctattt cacataatgt taaaaaaatc acagaaatga
     4801 tagaaaatga tggttcttta aaagcaaaaa tcgaagaact taaaaacaaa attcttgtta
     4861 aaagtcaaag ttaagtgaaa ggatgtgaaa aataaattct agagtgtgaa aaaaagaaat
     4921 taagcaaagt atgataaaat acaaatttga ttattttgct ttgaagaatt tcacaatttc
     4981 aacaagctta ttattacaac gaatttaaaa ttaaaataaa ccaaggagaa aaaatgaagt
     5041 taagtatcaa taaaaatact ttagaatctg cagtgatttt atgtaatgct tatgtagaaa
     5101 aaaaagactc aagcaccatt acttctcatc ttttttttca tgctgatgaa gataaacttc
     5161 ttattaaagc tagtgattat gaaataggta tcaactataa aataaaaaaa atccgcgtag
     5221 aatcaagtgg ctttgctact gcaaacgcaa aaagtattgc agatgttatt aaaagcttaa
     5281 acaatgaaga agttgtttta gaaaccattg ataatttctt atttataaga caaaaaagca
     5341 caaaatacaa acttcctatg tttaatcatg aagattttcc aaattttcca aatacagaag
     5401 gaaaaaacca atttgacatt gattcaagtg acttaagccg ttctcttaaa aagatattac
     5461 caagtattga tacaaacaac ccaaaatact ccttaaatgg tgcattttta gatataaaaa
     5521 cagataaaat taacttcgta ggaactgata caaaacgact tgcaatctat actttagaaa
     5581 aagcaaataa tcaagaattt agttttagta tccctaaaaa agctattatg gaaatgcaaa
     5641 aacttttcta tgaaaaaata gaaatttttt atgatcaaaa tatgcttatc gctaaaaatg
     5701 aaaactttga attctttaca aaacttatta acgataaatt tccagattat gaaaaagtta
     5761 taccaaaaac tttcaaacaa gaactcagct tttcaactga agattttata gatagtctta
     5821 aaaaaatcag cgttgtaact gaaaaaatga aacttcattt taacaaagat aaaatcatct
     5881 ttgaaggtat aagtttagac aatatggaag caaaaacaga gcttgaaatt caaacaggag
     5941 taagtgaaga atttaatctt actataaaaa tcaaatattt acttgatttc ttaacttcta
     6001 tagaagaaga aaaattcact ttaagtgtaa atgaacctaa ttcagcattt atagtcaaat
     6061 cccaaggact atcaatgatt atcatgccta tgattttgta ataaaacaag taaaagataa
     6121 aggaaaaata tgcaagaaaa ttacggtgcg agtaatatta aagtcctaaa aggcctagaa
     6181 gctgttagaa aacgcccagg tatgtatata ggagatacaa acataggcgg acttcatcat
     6241 atgatttatg aagttgtgga taattctatc gatgaagcta tggcaggaca ttgtgatact
     6301 atagatgtag aaatcactac tgaaggaagc tgtatagtta gtgataatgg tcgtggtatt
     6361 cctgttgata tgcacccaac tgaaaatatg ccaactttaa ctgttgtttt aactgtccta
     6421 catgcagggg gaaaattcga taaagatact tataaagttt caggtggttt gcacggtgtt
     6481 ggggtttcag ttgtaaatgc actctctaaa aaacttgtag ctacagttga aagaaatgga
     6541 gaaatttatc gtcaagaatt ttcagaaggt aaagttatca gtgaatttgg tgtgatagga
     6601 aaaagtaaaa aaacaggaac aactatagaa ttttggcctg atgatcaaat ttttgaagtg
     6661 actgaatttg attatgaaat tttggctaaa agatttcgtg aacttgcata cttaaatcca
     6721 aaaatcacta taaattttaa agataaccgc gtaggcaaac atgaaagttt tcactttgaa
     6781 ggtggaattt ctcagtttgt tacagactta aataaaaaag aagctttaac taaagcaatt
     6841 ttctttagcg tagatgaaga agatgtgaat gttgaagtag ctttgcttta caatgatact
     6901 tatagtgaaa atttactctc ttttgtaaat aatatcaaaa ctccagatgg tggaacacac
     6961 gaagctggtt ttagaatggg tttaactcgt gtgataagta actatataga agcaaatgca
     7021 agtgctagag aaaaggataa taaaatcacg ggtgatgatg tgcgtgaagg tttgatcgct
     7081 attgtgagtg taaaggtgcc tgaaccacaa tttgaaggac aaaccaaagg aaaacttggt
     7141 tcaacttatg tgcgtcctat agtttcaaaa gcaagttttg aatatttgac taaatatttt
     7201 gaagaaaatc ctatcgaagc taaagctata atgaacaaag ccttaatggc agctagagga
     7261 agagaagcag cgaaaaaagc tagagaatta acgcgtaaaa aagaaagttt aagcgtagga
     7321 actttaccag ggaaattagc tgattgtcaa agtaaagatc caagtgaaag tgaaatttat
     7381 cttgtggaag gggattctgc aggaggttct gcaaaacaag gtagagaaag atcttttcaa
     7441 gctatactgc ctttgcgtgg taaaatttta aatgttgaaa aagcaagatt agataaaatt
     7501 ttaaaatctg agcaaattca aaatatgatt accgcttttg gctgtggtat aggtgaagat
     7561 tttgatcttt caaaacttag atatcataaa atcatcatca tgacagatgc ggatgttgat
     7621 ggatcacata tacaaacctt gcttttaact ttcttcttcc gttttatgaa tgaacttgta
     7681 gcaaatggac atatttatct agcacaacca cctttatatc tttataaaaa agctaaaaag
     7741 caaatttatt taaaagatga aaaagctttg agcgaatacc tgatagaaac aggaatagaa
     7801 ggtttaaact atgaaggtat aggaatgaat gatttaaaag attatttaaa aatcgttgca
     7861 gcttatcgtg cgattttaaa agatcttgaa aagcgtttta atgtgatttc tgtgatacgc
     7921 tatatgatag aaaattcaaa tttagttaaa ggaaataatg aagaattatt tagtgtaatc
     7981 aaacaatttt tagaaacaca aggacacaat atcttaaatc attatatcaa cgaaaatgaa
     8041 attcgagctt tcgttcaaac tcaaaatggc ttagaagaac ttgtgatcaa tgaagaactt
     8101 ttcactcatc cactatatga agaagcaaat tatatttttg ataagattaa agatagaggc
     8161 ttggaatttg ataaagatat tttagaagtt cttgaagatg ttgaaaccaa tgctaaaaaa
     8221 ggtgctacta tacaacgcta taaaggttta ggggaaatga atcctgagca actttgggaa
     8281 accacaatgg atccaagtgt aagaagactt ttaaaaatca ctattgaaga tgcacaaagt
     8341 gcaaatgata cctttaatct ctttatgggt gatgaggttg aaccaagacg cgattatatc
     8401 caagcacacg ctaaagatgt aaagcatttg gatgtgtaaa tttatcattg aagaaatcat
     8461 ttcttcaatg agttttgttt tgtaagagta tagctagagg aattcttctt cttgtatcgt
     8521 atttttctcc ataatatttt tcaagataat ttaaaatttt ttcttcatct tcaggttcta
     8581 tttcccaaag tccttcacta tcttgcatcc atcttatagc tgctaaccaa gcttttctac
     8641 ttgcatgcat attagtaatg agattggatc catgacaagc taaacaattt gcttccacta
     8701 aaggtgaatc aggatcgata atcaatcctg tatcagggtt aatttcaaga ttttgagccc
     8761 aacttgcact taaaaacaat gctaagatca atataatttt tttcatactt aaactccata
     8821 aatattaact ctatggcatg cattattgat atatcctcct ggattccact gtgctaaaac
     8881 cataggttga ctgttacctt gactatcgat agctcttgcc caaatttcat aatatccttt
     8941 tgttggtatt gatatttgag cactccattt ttgccatgct aatctattta atggtttttc
     9001 tacctttgct ttagtccatg ttacgccata atcattgctt atataaactt cactaacttc
     9061 aagttctcca gcccaagctt tacctctaac ttcaaatttt ttatttgctt ttatttcaga
     9121 accatttttg atattagtaa ttacagatct tataggcatt gattctatga ttttcatctc
     9181 gcctttatag ttaaaatctc ctggttttac cggatttaca ggaactttat aagaaccttc
     9241 cattttttca ccatcatgaa ttttatttct tactgaaatt ttataaagcc atttaccgct
     9301 tgtacttgca gggtaaccac cacaaacaag tctaagtgga tagccattga ctaaaggaat
     9361 atctttgcct tcataagccc aagctattag agtttcatct tgtaaagctt tagaaatagg
     9421 aactcctcta ctaataggtg aagtttcttc accatttaat tttgtatcta tgccataata
     9481 tccgatataa accgcatcat ttttgatgcc acaatctttt aaaatatctt ttaaacgcac
     9541 tcctgtccat ctaccgcaag ctactgcacc ataaccccat tgagttcctt ttgtgctagg
     9601 tataacttcg gatctaccat ttccaccgca ttcaactgtt aaggcataag tataggtttt
     9661 aaatttcttt tttaaatctt ctatggtgta agatttttta ttgataatgc tttctccatc
     9721 gatttctaaa gtccaacctt tgtgaagtct ttcttttatc gtttctaggc ttggtggtaa
     9781 gccattattt ctaacaaaga aattttcagg tttagtaaaa tcagaatcaa gagcataaat
     9841 ttcagtttct gctgttaatg gtttttcgcc atggtagata agatcttttt taccttctat
     9901 tttaaaatca ggcaattctt ttgccaaagc cttacttcct aaaaaattct caaaagaaaa
     9961 atttgacaat acactaatgc caaataaacc aagtcctata ttttttagaa agtctctacg
    10021 attttctttt tgatcgttct gtttcattga
//
LOCUS       DBBXPZ010000064        10028 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.066, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000064 DBBXPZ010000000
VERSION     DBBXPZ010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10028)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10028)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10028
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.066"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..229
                     /locus_tag="ACJFD7_001319"
     CDS             <1..229
                     /locus_tag="ACJFD7_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HGG0860122.1"
                     /translation="LFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAILEYRK
                     EANFTSIDDLKKVKGIGDKLFEKIKNDITVE"
     gene            262..837
                     /gene="rnhB"
                     /locus_tag="ACJFD7_001320"
     CDS             262..837
                     /gene="rnhB"
                     /locus_tag="ACJFD7_001320"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HGG0860123.1"
                     /translation="MKTLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKQL
                     DGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFK
                     TENNFLYDGNTNLGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEF
                     EKNKAYGTKAHKEFIAKFGICKLHRKSFKLL"
     gene            complement(838..2283)
                     /gene="gltD"
                     /locus_tag="ACJFD7_001321"
     CDS             complement(838..2283)
                     /gene="gltD"
                     /locus_tag="ACJFD7_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HGG0860124.1"
                     /translation="MGNARGFLDFKRMDFKKIAPKERVLNFKEFTIPLDKKEQEIQGG
                     RCMDCGVAFCHTGVMSEGKDVGCPLNNLIPEWNDLVYRSLWKEAYERLDLTNPFPEFT
                     GRVCPAPCEDSCVCAINGVSVSIKNNELSIIENAFKENLVRVNKPKQYNGKKIAVIGS
                     GPAGLACANTLNSLGYKVSVFERSDKIGGLLMYGIPDMKLDKSIVQRRVDLLKKSGIE
                     FKVNENIDSKDKVSKLLKEFDALVLCTGASKPIDLDIEGRKLKGVEFALDFLTQNTKT
                     LLKTGKGADMAKGKNVLVIGSGDTSVDCIAVATRQGAKSIVRFERSPKRPLQRSQNNP
                     WPLKADIFTTDYGLEEAIAVYGKDPREYQKMTKKFLGKTHVEGVEANDLKREFKEGKA
                     INVEISNSKKTYKADLVLLAMGFSGCEEAISKNFGVKLDEKNNISTENFQTTHKKIFA
                     CGDARKGQSLVVWAIKDGIECALSLHQNLAK"
     gene            complement(2286..4037)
                     /locus_tag="ACJFD7_001322"
     CDS             complement(2286..4037)
                     /locus_tag="ACJFD7_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF262 domain-containing protein"
                     /protein_id="HGG0860125.1"
                     /translation="MAGFQSPITINEAMQRIKNNEYLLPAFQREYVWEPWQIEELFDS
                     LIRGYPISSMLFWKVKDESKTAWKFYRFLEYYRESYHTHNDYFNTSNHKDFYAILDGQ
                     QRLTSLYFALFGNYDIHRSYNKWENNDRYFKICHFYFNLTQSKKPENENIEYEFLWLD
                     KLETKEQNIYIDKYQQKWFKCQYLYQYDSGRVRKIAKEFNLNENEEDRLDLLHQKIFD
                     KNLINFYLEEEQDPDKAVNIFIRINSNGEPLDYSDILFSIAIANWNKIDARTEINNLV
                     DKINENFDISKDLILKGFLYLFHNNIKFQINSFDKNFIESIEAKWEGIKNAFIETFRL
                     LRSFGFEAKTLSSNNAILPILYFIYHKNLTNNIVDSVKCNENRAIIKKWLLRAIILKP
                     FGGSSDTVLSNMRKAFIKDFKQNSGFFDREIELFPLEEIEKEAKYIQTIDEEYLENNV
                     IECRKNSPEAFAVLSLLYPNLDYKNNNFHKDHLHPESAYKEYEKLYKATDNCISFNIY
                     DSLPNLQMLDANENESKNNKPLKQWVNEKCNGNRKEFLGKHLIPDVDLSLENFNNFIE
                     ERKKIIIDKLKSILNKE"
     gene            complement(4047..8537)
                     /gene="gltB"
                     /locus_tag="ACJFD7_001323"
     CDS             complement(4047..8537)
                     /gene="gltB"
                     /locus_tag="ACJFD7_001323"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0015930 - glutamate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006537 - glutamate biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HGG0860126.1"
                     /translation="MDLENILENNQSIGLYHPKNEHDACGIAAVANIRGIASYKVICD
                     ALEILMNLEHRGGAGAEENSGDGAGILIQIPHDFFKTQELGFELPKKGDYAVAQMFLS
                     PNTDAKEEAKEIFLQGLKDKKLEFLGFREVPFNPSDIGASALKAMPYFLQAFVKKPSK
                     ISAGLEFERVLYSTRRLIEKRAINVPKFYFSSFSSRTIVYKGMLLSTQLSDFYLDFKD
                     VNMKSAIALVHSRFSTNTFPSWERAHPNRYMVHNGEINTIRGNVDSIRAREGLMQSEY
                     FENLDEIFPIIAKPSSDSAMFDNTLEFLALNGRTLEEAFMMMVPEPWHKNENMESKKR
                     AFYEYHSLLMEPWDGPAAIVFTDGVIMGASLDRNGFRPSRYYLTKDDMLILSSETGAL
                     KLDEKNIKAKKRLEPGKLLLVDTARGRVIADNEIKEHYANAKPYKKWLKNLVELEKQK
                     SGVYKHQFLKEDEVLKLQKAFGWSYDELKMSVAAMAQNGKEAIAAMGVDTPLAILSKT
                     YQPLYNYFKQLFAQVTNPPLDAIREEIVTSTRIYLGSEGNLLKPDENNAKRVKIALPV
                     ISNEELFEVKALNKFQVKEFSILYDYSKKTLEKALDELCVKIEDEVKKGVSIIILSDK
                     GVDEKNAYIPALLAVSGVHNHLVRKNLRTHTSLIIESGEPREIHHFACLLGYGATVIN
                     PYLVYESIQKLIANKDLNLSYEKAVENFIKASSSGIVKIASKMGVSTLQSYNGSALFE
                     CLGLSSKVIDKYFTSTTSRIEGMDLEDFEKELIALHKHAFNDTHKALDSKGIHGFRSA
                     KEEHLIDPLVIFNLQQACRNKDYKSFKKYSALVDEKQVNLRSLMEFDFSEAISIDKVE
                     SVESIVKRFRTGAMSYGSISKEAHECLAQAMNKIGAKSNSGEGGEDEERYEIKEGVDK
                     NSAIKQVASGRFGVDLNYLSHAKEIQIKVAQGAKPGEGGQLMGFKVYPWIAKARHSTA
                     GVTLISPPPHHDIYSIEDLAQLIYDLKHANKDAKISVKLVSENGIGTVAAGVAKAGAN
                     LILVSGYDGGTGASPRTSIPHAGIPWELGLAETHQTLILNKLRDRVRLETDGKLMNGR
                     DLAIAALLGAEEFGFATAPLIVLGCTMMRVCHLNTCPFGIATQDTELRDRFKGKVDDV
                     INFMYFIAEELREYMARLGFERLDDMIGRVDKLRQKSVQGKAGKLNLDKILKSLPTYN
                     RTAVHFKDYKDNKLEKTIDYRILLPLCKNAVEKKEPIKLSLEVGNQSRTFATMLSSEI
                     LKTYGKDALDEDSIHIKAIGNAGNSFGAFLLKGIKLEIIGDSNDYLGKGLSGGKIIAK
                     ISNEATFSPEENIIAGNACLYGATKGEVYLDGIAGERFCVRNSGALAVVLGTGVHGCE
                     YMTGGKVVVLGDVGANFAAGMSGGVVYIFGRHNEAHVNTELVDIKDLNAKDEKELKAV
                     IEKHIAYTDSKKAKDILEKFDKKDFFKVMPRDYEKMLKMLDLCKNEKDPNLAAFLKIT
                     QK"
     gene            complement(8671..9978)
                     /locus_tag="ACJFD7_001324"
     CDS             complement(8671..9978)
                     /locus_tag="ACJFD7_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HGG0860127.1"
                     /translation="MILTLLTNPIIISVVLMTLLCLFRFNILLSLLISALVAGVFSHL
                     ELVDTMNILISGMKENLKTALSYILLGAIAAAISKTNLTAYLIKIVSHFISHKKYLLL
                     LSIALISCFSQNLIPIHVAFIPLLIPPLLSLFNKLKIDRRAVACALTFGLTTPYMVLP
                     VGFGLTFQDLLKDNLNANNVSVSLNDVTNTMYFAAICMIAGLFLALFVFYRKSREYQE
                     VEIAKVDLENLEMTRKEWGVLAGLVLTLILQILTMNLPLSGLLGFVLMVILGGVEFSK
                     VNEVFDDGLKMMGFIAFVILVAAGYGEVLKESGSVVDLVNSVVPWMEQSKFLAVFFML
                     LIGLIITMGIGTSFGTIPIIATLFCPICLELGFSTALIIFILGVAGALGDAGSPASET
                     TMGTTVGLNADKQHDHIKDTCIPTFIFYNGPLLILGSIIAMFL"
BASE COUNT         3333 a         1902 c         1304 g         3489 t
ORIGIN      
        1 actattttta ttttttgctt taacggcttt tctctttggt gctgtaaata tcaacactgc
       61 aacgctaaaa gaattaaaaa gtttaaatgg tattggcgaa gctaaggcta aagcgatttt
      121 agaataccgt aaagaagcaa attttacaag tattgatgat cttaaaaaag ttaaaggcat
      181 aggtgataag ctttttgaaa aaatcaaaaa tgatatcaca gtagaataaa agggcatttt
      241 tgcccttctt tttagaaaaa tttgaaaact ttatttgaca caaaagaact tttaaacgaa
      301 tttgatataa atttaatcgg tattgatgaa gcaggacgcg gtgctttagc aggtcctatg
      361 atgatggcag cttgcaaact gaacaaacaa cttgatgggt tgtgtgattc taaaaaacta
      421 agcgaaaaaa aacgcgaaga actttatgaa atcatcatca aaaattcaaa ctatctcata
      481 cttgcttttt cttcggaaca aatcgacgca ctaggcttaa gcacttgttt aaaaaaaggc
      541 ttaaaactta taaaaaagca ttttaaaaca gaaaataact tcttatatga tggaaacacc
      601 aacctaggta taaacgggat aaaaacacaa atcaaagccg acactagcat tttgcaagta
      661 agtgcagcta gcatactcgc aaaagttagt aaagataggg tgatgaattt cttagctaaa
      721 gactttcctt gttatgaatt tgaaaaaaac aaagcctatg gcacaaaagc tcataaagaa
      781 tttatagcta aatttggaat ttgcaaactc caccgaaaaa gttttaaact tttatgatta
      841 ttttgctaaa ttttgatgca aactcaaagc acattctata ccatctttta tagcccaaac
      901 aactaaagat tgtccttttc tagcatctcc acaagcaaag atttttttat gagtggtttg
      961 gaaattttct gtgcttatgt tgtttttctc atctaatttc actccaaaat ttttagagat
     1021 agcttcttcg cacccgctaa aacccatagc taaaagcact aaatccgctt tataagtttt
     1081 tttagaattt gaaatttcga catttatagc tttgccttct ttaaactcgc gttttaaatc
     1141 atttgcttca acaccttcta catgagtttt tcctaaaaat ttctttgtca ttttttgata
     1201 ttccctagga tctttgccat atacagcaat ggcttcttct aaaccataat cagtagtaaa
     1261 aatgtcagct tttaaaggcc aaggattgtt ttggcttctt tgcaaaggtc tttttggact
     1321 tctttcaaaa cgcactatag atttagcccc ttgtcttgtc gctacagcga tacaatccac
     1381 acttgtatcc ccgcttccta taaccaagac atttttacct ttggccatat ctgcaccctt
     1441 gcctgttttt aacaaagttt tggtattttg cgttaaaaaa tcaagggcaa attcaacccc
     1501 ttttagcttt ctaccttcta tatcaagatc tataggctta cttgctcctg tacaaagcac
     1561 caaagcatca aattctttta gaagttttga aaccttatct ttgctgtcta tattttcatt
     1621 cactttaaat tcaatcccac tttttttaag caaatccacc cgtctttgaa ctatactttt
     1681 atcaagcttc atatcaggga tgccatacat caaaagtccg cctattttat cgcttctttc
     1741 aaaaacactt actttataac ctagtgaatt taaagtattg gcacaagcaa gcccagcagg
     1801 cccacttcct atgacagcga tttttttgcc attgtattgc ttaggtttat ttactcttac
     1861 taaattttcc ttaaaagcat tttctataat ggataattca ttatttttta tgctcacact
     1921 aacaccattt atcgcacaca cacaagaatc ctcacaagga gcagggcaaa cacgaccggt
     1981 aaattcagga aaaggattgg taagatcaag tctttcataa gcttctttcc ataaagaacg
     2041 ataaacaaga tcgttccatt caggaatgag attgtttaaa ggacagccta catcttttcc
     2101 ttcgctcatc acacccgtat gacaaaaagc taccccacaa tccatacatc gtccaccttg
     2161 aatttcttgt tcttttttat ccaaaggtat agtaaattct ttgaaattta aaaccctttc
     2221 cttaggagca atttttttaa aatccattct tttaaagtct aaaaaacctc ttgcatttcc
     2281 catttttact ccttatttaa tatacttttt agcttgtcta taataatttt ttttctttct
     2341 tctataaaat tattaaaatt ttccaaagat aaatcaacat caggaattaa gtgttttcct
     2401 aaaaattcct ttctatttcc attacatttt tcatttaccc attgctttaa aggtttgtta
     2461 tttttagatt cattttcatt tgcatcaagc atttgtaaat ttggtaaaga atcataaata
     2521 ttaaaagaaa tacaattatc tgtagcttta taaagttttt catattcttt atatgcggac
     2581 tctggatgca aatgatcttt atgaaaatta ttatttttat aatctaaatt tggataaagt
     2641 aaagataaca cagcaaacgc ttcaggacta tttttacggc attctatgac attattttct
     2701 aaatattctt catctattgt ttgtatatat tttgcctctt tttcaatttc ttccaatgga
     2761 aataattcta tttctctatc aaaaaagcca ctattttgct taaaatcttt aataaaagct
     2821 ttacgcatgt tagacaatac cgtatcacta cttccaccaa aaggctttaa aataattgcc
     2881 cttaacaacc atttttttat tatagctcta ttttcattac acttgacaga atctactata
     2941 ttatttgtca aatttttatg ataaataaaa tataaaatgg gtaaaatagc attatttgat
     3001 gaaagtgttt ttgcttcaaa tccaaaactt ctaagcaatc taaatgtttc gataaaagca
     3061 ttttttatgc cttcccattt agcttctatg gattctataa aatttttatc aaaactattg
     3121 atttgaaatt taatattgtt atggaataaa tataaaaatc ctttaaggat taaatcttta
     3181 gagatatcga aattttcatt aattttatct acaagattat ttatttctgt tcttgcatca
     3241 attttattcc aatttgcaat agcaatacta aataaaatat cagaataatc aagaggctca
     3301 ccatttgaat taattctaat aaaaatatta accgctttat ctggatcttg ttcttcttct
     3361 aaatagaaat taattaaatt cttatcaaat atcttttgat gcaatagatc taatctatct
     3421 tcttcatttt cgtttaaatt aaattctttt gctatttttc ttactcttcc tgaatcatat
     3481 tgatataaat actgacactt aaaccatttt tgctgatatt tatcaatata aatattttgt
     3541 tcttttgttt ctaatttatc aagccataaa aattcatatt caatattttc attttctggt
     3601 ttcttgcttt gagtgagatt aaaataaaaa tgacaaattt taaaatatct atcattgttc
     3661 tcccatttat tatatgatct gtgaatatca taatttccaa acaaagcaaa ataaagcgaa
     3721 gttaatcttt gttgtccatc taaaatcgca taaaaatctt tatggtttga ggtgttaaaa
     3781 taatcattat gcgtatgata cgattcacga taatattcta aaaatctata aaatttccaa
     3841 gctgtcttgc tttcatcttt tactttccaa aaaagcatag aacttatagg atatcctcgt
     3901 attagtgaat caaataattc ttctatctgc caaggctccc aaacatactc tctttgaaat
     3961 gctggaagta aatattcatt gttttttatt ctttgcattg cttcattaat tgttattggt
     4021 gattgaaatc ctgccatttt tactccttat ttttgtgtga ttttcaaaaa tgctgctaaa
     4081 tttggatctt tttcattttt acaaagatca agcattttta acatcttttc ataatctctt
     4141 ggcatgactt taaaaaagtc ttttttatcg aatttttcta agatatcttt agccttttta
     4201 gaatctgtat aagcgatatg tttttctatc acggctttta attctttttc atccttggca
     4261 ttaagatctt taatatccac aagctcggta tttacatgag cttcattgtg tcttccaaag
     4321 atataaacaa cgcccccact cataccagca gcgaaattcg cacccacatc tccaagaact
     4381 acaacttttc cacctgtcat atattcacaa ccatgcacac ctgttcctaa aaccacagcc
     4441 aaagcccctg aatttcttac acaaaatctt tcccctgcta taccatctaa atacacttca
     4501 ccttttgtag ctccgtataa acaagcattt cctgcgatga tattttcttc aggtgaaaaa
     4561 gtggcttcat ttgaaatttt tgctatgatt ttaccaccac ttaaaccctt gcctaaataa
     4621 tcattgctat cgcctataat ctcaagttta atacccttta acaaaaacgc tccaaaacta
     4681 ttgcctgcat tgcctatagc tttgatatgg atactatctt catctaaagc atcttttcca
     4741 taagttttta aaatttcact tgaaagcata gttgcaaaag tacgactttg atttcctact
     4801 tctaaagaaa gtttgatagg ctcttttttc tccacagcat ttttacaaag tggtagtaaa
     4861 attctataat caatcgtttt ttcaagttta ttgtctttat aatctttaaa atgcacagcg
     4921 gttctattat aagtaggcaa ggattttaaa attttatcta aatttagctt tcctgcttta
     4981 ccttgcacac ttttttggcg gagtttatcc acgcgaccta tcatatcatc taggcgttca
     5041 aaaccaagcc ttgccatgta ttctctaagc tcctcagcta taaaatacat gaaattaatc
     5101 acatcatcta ctttgccttt gaaacgatct ctaagttctg tatcttgagt ggctatacca
     5161 aaaggacagg tatttagatg acaaactctc atcattgtac aacctaaaac aatcaaaggc
     5221 gcggttgcaa aaccaaattc ttcagctcct aaaagtgctg ctatggctaa atcacgccca
     5281 ttcataagct ttccatcagt ttctaatctt accctatctc taagcttatt taagatcaaa
     5341 gtttgatgcg tttcagctaa gcctaactcc caaggaattc cagcatgcgg tatagaagtt
     5401 ctaggacttg cacccgtacc tccatcataa cctgaaacaa ggattaaatt cgcgcctgcc
     5461 ttagccacac ctgcagcaac cgttcctatg ccattttcgc ttacaagttt tactgaaatt
     5521 ttagcgtctt tgttcgcatg ttttaaatca taaatgagtt gagccaaatc ctcaatagaa
     5581 taaatatcat gatgaggagg tggggaaata agcgtcacac ctgcagtaga atgtctagcc
     5641 ttagctatcc aaggatagac tttaaagccc attaattgtc cgccctcacc tggttttgca
     5701 ccttgagcga ctttgatttg aatttctttt gcatgactta agtagtttaa atccacgcca
     5761 aaacgcccac ttgctacttg cttaatggct gagtttttat ccacaccctc tttgatttca
     5821 tagcgttctt catcctcacc accttcacct gaatttgatt tagcacctat tttattcata
     5881 gcctgtgcta aacactcgtg tgcttcttta gaaatagaac cataactcat cgcccctgtt
     5941 ctaaagcgtt taactatact ttctacactt tcaaccttat ctatactgat agcttcacta
     6001 aaatcaaatt ccatcaaaga acgcaaatta acttgttttt catctactaa agccgagtat
     6061 tttttaaagc ttttatagtc tttgttgcga caggcttgct gaagattaaa aatcacaagc
     6121 ggatcgatta aatgttcttc tttagcactt ctaaaaccat gaattccttt agaatctaaa
     6181 gccttatgtg tatcgttaaa agcatgtttg tgtaaagcaa tgagttcttt ttcaaaatct
     6241 tctaaatcca taccttcaat gcgtgaagtt gtagaagtga agtatttatc aatcacctta
     6301 gagcttaagc ccagacattc aaaaagtgca gagccattat aactttgcaa ggtagaaacc
     6361 cccattttag aagcaatttt gactatacca cttgaacttg ccttgatgaa attttctacc
     6421 gccttttcat aacttaaatt taaatcttta ttggcaatga gtttttgtat actctcataa
     6481 accaaataag gattaataac agtcgcacca taacctaaaa gacatgcaaa atgatgaatt
     6541 tctctaggtt caccactttc gatgataaga cttgtatgtg ttcttaaatt ttttcttact
     6601 agatgattat gcactccaga aacagcaagc aaagcaggga tataagcgtt tttttcatcc
     6661 actcctttat cgcttaaaat gataatagaa acaccttttt taacctcatc ttctatctta
     6721 acgcaaagtt catctaaagc cttttctaaa gtttttttag aataatcata aagtatagaa
     6781 aattctttaa cttgaaattt atttaaagcc ttaacttcaa aaagttcttc attgcttatc
     6841 acaggcaagg ctatttttac gcgttttgca ttgttttcat cgggttttaa taaattgcct
     6901 tcgcttccta gataaatcct tgtagaagta acaatctctt ctcttatggc atcaagggga
     6961 ggattagtta cttgtgcaaa aagttgttta aaataattat acaaaggttg ataagtttta
     7021 gaaagtatag ccaaaggagt atctacaccc atagctgcta tagcttcttt accattttga
     7081 gccatagcag ccacactcat tttaagctca tcataactcc aaccaaaagc tttttggagt
     7141 tttaaaacct catcttcttt taaaaactga tgtttataaa ctccgctttt ttgtttttca
     7201 agttcaacta aatttttaag ccatttttta taaggcttag cattagcata atgctctttg
     7261 atttcattat cagctataac cctacctctt gctgtatcaa caagtaaaag ttttccaggt
     7321 tctaagcgtt ttttggcttt gatatttttt tcatcaagtt ttaaagcccc tgtttcactt
     7381 gaaagtatga gcatatcatc ttttgtaaga taataccttg aaggacgaaa accatttcta
     7441 tccaaactcg cccccataat cactccatca gtaaaaacta tagcagcagg cccatcccaa
     7501 ggctccatca ataaagaatg atattcataa aaagcacgct ttttgctttc catattttca
     7561 tttttatgcc aaggttctgg caccatcatc ataaaagctt cttctaaagt acgaccattt
     7621 agagctaaaa attctaaagt attatcaaac attgcagaat cactgctagg cttagctatg
     7681 ataggaaaaa tttcatctaa attttcaaaa tactcacttt gcatcaagcc ttctctagct
     7741 cttatgctat caacatttcc gcgtatggta ttaatctctc cattatgcac catataacgg
     7801 tttggatggg ctctttccca acttgggaag gtattagtcg aaaagcgaga atgcaccaaa
     7861 gcgatggctg atttcatatt gacatcttta aaatcaagat aaaaatcgct caattgagtt
     7921 gaaagaagca ttcctttata aactatggtg cgtgaagaaa aacttgaaaa ataaaatttt
     7981 ggcacattaa tagctctttt ttctataagt cgacgcgtac tataaagcac tctttcaaac
     8041 tcaagtcctg cacttatttt acttggtttt ttcacaaagg cttgtaaaaa ataaggcata
     8101 gcttttaaag cacttgcacc tatatcgcta ggattaaaag gcacttctct aaaacctaaa
     8161 aattcaagtt ttttatcctt taaaccttgt aaaaatattt cttttgcttc ttcttttgca
     8221 tcagtattgg gtgataaaaa catctgtgct acagcataat cacccttttt aggaagttca
     8281 aaacccaatt cttgagtttt aaaaaaatca tgtggaattt ggattaaaat ccccgcccca
     8341 tcacctgaat tttcttcagc tcctgcacca cctcggtgtt caagattcat caaaatttct
     8401 aaagcatcac aaataacctt ataagaagca ataccgcgta tattagcaac tgcagcgata
     8461 ccacaggcat cgtgttcgtt ctttgggtgg tataaaccta tgctttgatt attttctagg
     8521 atattttcta aatccatttt gctctcctta taagactgat ttaaattttg ttagctttat
     8581 aaggattata gcatacattt ttttaaaatc gatataattt ttatcttaaa aataaataaa
     8641 ttaaaaaata ttttgataga tttgcaaaaa ttataaaaac atggcgataa tactacccaa
     8701 aatcaataat ggaccattat aaaaaataaa agttggtatg caagtatctt taatgtgatc
     8761 gtgttgttta tcagcattta atcctacagt agttcccatg gttgtttcac tggctggact
     8821 tcctgcatct cctaaagctc ctgctactcc taagataaat ataataagtg ctgtactaaa
     8881 accaagttcc aaacaaatag gacaaaaaag cgtagctatg ataggtatag ttccaaaaga
     8941 agtacctata cccatagtga taataagtcc tattaaaagc atgaaaaata ctgctaaaaa
     9001 tttactttgc tccatccaag gaacgactga atttacaaga tctactactg atccactttc
     9061 ttttaaaact tctccatatc ctgcagcaac aaggataaca aaagctataa aacccatcat
     9121 tttaagccca tcatcaaaaa cttcattgac ttttgaaaat tcaactccac ccaaaataac
     9181 cattaaaaca aaacccaaaa gccctgataa aggtaaattc atagtcaaaa tttgcaaaat
     9241 taaagttaaa acaagcccag ctaaaacacc ccattcttta cgcgtcattt caagattttc
     9301 taaatccact ttagcaattt ctacttcttg atactctctt gacttacgat aaaacacaaa
     9361 aagcgctaga aaaagtcctg ctatcataca aatagcagcg aaatacatag tatttgtaac
     9421 atcatttaaa gatacactta cattatttgc atttaaatta tcttttaaaa gatcttgaaa
     9481 agtaagtcca aagcctactg gcaaaaccat ataaggcgta gtaagtccaa aagttaaagc
     9541 acaagcaacc gctctacgat cgattttaag tttattaaaa agacttaaaa gaggtggaat
     9601 caacaaaggt ataaaagcca catgaatagg aattaaattt tgagaaaaac aagaaatcaa
     9661 agctatagac aaaagcaata aatatttttt atgagatata aaatgactta ctatcttaat
     9721 caaatatgca gttaaatttg tctttgaaat cgctgcggca atggccccta aaagtatata
     9781 gctaagagct gtttttaaat tttctttcat tccgcttata agtatattca tagtatctac
     9841 gagttcaaga tgagaaaata cacctgcaac aagagctgag atcaaaagac tcaaaagtat
     9901 attaaaacga aacaaacaaa gtaaagtcat caaaacaaca ctgataatga taggattagt
     9961 aagtaaagtc aaaattattc cttaaataat tttaaaaatt taattgtaga aaaaacttag
    10021 ttaaaatg
//
LOCUS       DBBXPZ010000065         9389 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.067, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000065 DBBXPZ010000000
VERSION     DBBXPZ010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9389)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9389)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9389
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.067"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..2042
                     /locus_tag="ACJFD7_001325"
     CDS             <1..2042
                     /locus_tag="ACJFD7_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033573 - high-affinity iron permease
                     complex [Evidence IEA];
                     GO_function: GO:0005381 - iron ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0034755 - iron ion transmembrane transport
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FTR1 family protein"
                     /protein_id="HGG0860128.1"
                     /translation="SAFARVDDYINEANLIKDMLKQSIETYKKGDNLGAKKLSEDAYF
                     QHFENMEGSIGRNIGRKAITMERKFVNLRRMYKDEAPLTQINALIDSLYYDLDEVAPI
                     LQNGYRLKAEASDINYDKAKAEKSSLEANAKREADAEALIAQMMGVDKKDLAQSSLTT
                     QAPIPVNNDTSKLIDDNASTDLQAAAAMDAKLQFILDNISTKFSQAANAFKEKNYQAS
                     KDFLNDALFSDYRNTKVEILVNKFTKAGNDQKIQQAIRTLIRQINDAKIDEKDLRDDL
                     DNIEEQIFDVFLQIPNSELSSLQISGFNDETKGKDYAKVSNDIKLALDEILKNYDGFS
                     TSMVDDLQGIYLDIFEASGMENKIGAVDSGLKLKIESLFSKGMALIKASADKKELEAT
                     FNDLEQLIASSVDKIQDSTPYSLFIWALGIILREGLEALIIIVAIVSYLVQSGNKNRL
                     NIAYSALFTGVILSFITAFGVSWLFKENAGQSRELIEGITMLIAVLLLFYVGFWLLSN
                     AQNKKWTSFIKQGAIDAISNNSAKTLWITVFLAVYREGAETVLFYQALLFDAKTSTDF
                     GAVFGGLGLGILILIVLYFLLKAGAIRIPVKQFFYITSYIIFYMVFVFTGKGIAELIE
                     GKVIIPSLIPMNFEPILWLGIYPYYETLIPQFIVLIMLIIGILITKQISKKGVKS"
     gene            2039..2578
                     /locus_tag="ACJFD7_001326"
     CDS             2039..2578
                     /locus_tag="ACJFD7_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HGG0860129.1"
                     /translation="MIKKVLSVVAAAAVISTNLFAGEVPIGDPKELNGMEIAAVYLQP
                     IEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKR
                     GTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVG
                     KWFEPFKVDYKFKYTGTPK"
     gene            2661..4064
                     /locus_tag="ACJFD7_001327"
     CDS             2661..4064
                     /locus_tag="ACJFD7_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S-containing protein"
                     /protein_id="HGG0860130.1"
                     /translation="MSIYFVHFLISVLPLSILMAFITPNKKYIFKSFLVVFLGFLFGY
                     FAFFIAAQFLKTENLIFNFDFVFIGLLLVSFIFYFWKKIEILNFILLGILSFCTALHY
                     YFLSQDFPIFTSSLIDSEGISSLGFIALALLVCILIFFFLKWQKNFNQKTSFMLFLLL
                     ILIESDKALANILLTLMRNSIIETHTFLVSFVGKSNYFGVFGIYIYLIFIAFLAFLSL
                     KIRKKNISKKQILDINYRKNEAKTSLINRYFSSVFISCVISFCIILYFFMVSSKPLTI
                     NEPKEILPDKNGKFIFDIALLRDNKLHRFAYISAEGKVIRFFLINKREDKDSPVAVFD
                     ACMICGDMGYIKKDGQLICISCNVRIFLPSVGKSGGCNPIPLKYEYDGKKITIDVKDV
                     IAGSNYFSQIKEIEVQDPVSKTKVINTQAPFSYSYKGITYYFSNQNNYEEFKKDPTKY
                     VEENEAQFLIQRRNDVG"
     gene            4054..5343
                     /locus_tag="ACJFD7_001328"
     CDS             4054..5343
                     /locus_tag="ACJFD7_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0860131.1"
                     /translation="MLAKMIFNSIFKNKIQKFLAFLTCFLATLLLSTMLNITLSIGDE
                     VTKQLKSYGSNILVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMIKDIYWRNNITA
                     LAPFLEGKITIENSQQKALIYGTYFQKAIKIKDDDDFITGIKSLYPYLAVQGEWAKDD
                     SNEIMPGEDFAKNNKLKLGDTIKLIGENNQSKEAKIVGILLHANPKMSNKIIAPLNLA
                     QDLLNKQGLYSSAEVRAFTIPESTLSEKVRRMGEEKLDQLEYDKWYCSAYVGSIASQI
                     SDGLPGADAKALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRKK
                     EIGLLKVLGANTFQIYLIFAGENLIVALFAALFGFIFGTALSQIISLSIFGYFIDIAF
                     IALPLSFIFAGLIALLGCLLPIKNITQLSAAGVLYGR"
     gene            5333..6451
                     /locus_tag="ACJFD7_001329"
     CDS             5333..6451
                     /locus_tag="ACJFD7_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0860132.1"
                     /translation="MVDKFFLNELFKSINFSYQRLFIIVLSVFIGALTCSAFLNIYFD
                     IDTKLSKELKAYGANVMISPKRDENFISNAEYEKIKENLKARALTPFLYDFLNLGSTS
                     GVVLGTDFRALKITKPFLEVKEGSFSLNDFDENSAFLGVNLAKQLGLKTGNELQIYNP
                     NNGKSIKLTIKGILSSNDEFDSIVLAPLSVVQNLSDRAGINYANAVVYGNFDEVKAKT
                     QAINNEFIDAKPISSVSLSEGLVLGKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRK
                     KEIALRLALGAKKSEIFKLFASECFIVSFFASLIGAFCGIFLANVFGYLIFNSSIDFR
                     FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE"
     gene            6448..7101
                     /locus_tag="ACJFD7_001330"
     CDS             6448..7101
                     /locus_tag="ACJFD7_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0860133.1"
                     /translation="MMKKELIKINNLNKEFGKVKALNNINLSVYEGEWLAIMGPSGSG
                     KSTLLNILSFMDTPSSGEYILDNENLEQMDEEQKITLRREKIGLVFQQFHLIPYLNAL
                     ENVMLSQYYHSSVDEEDAKMVLEKVGLSHRLTHLPSQLSGGEQQRVCIARALINNPEL
                     LLADEPTGNLDEANEQIVLQTLQKLKNEGKTIVLITHNPDLAKFADRTLILQHGVLK"
     gene            7098..7586
                     /locus_tag="ACJFD7_001331"
     CDS             7098..7586
                     /locus_tag="ACJFD7_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HGG0860134.1"
                     /translation="MKKSLLILSILFLLNACSFENSKDTGKVGEKSAEISAKDTLGKA
                     VKLADDNTSLKVLVFFQNGCPSCLKELPSLDEFIQNHPNKISVYAINSIDNANVVKVL
                     AEQFDFKNVKVLKDDLKITNDRYAVFATPTTIIIKDGMIKDRILGEKPWEFFESKLTS
                     LL"
     gene            7547..8050
                     /locus_tag="ACJFD7_001332"
     CDS             7547..8050
                     /locus_tag="ACJFD7_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HGG0860135.1"
                     /translation="MGIFRIQAYFFALIIALFFVACDSGENFKALNSDKTYNFAYNGF
                     EKSLKLNDKAQNFAFVFFTKDCGVCKEQIPILQNLAKNYDFNIFVVLGDANDANDAKA
                     WADEKGLSNLAMFYEKRAAKYLSSAIGEIYGVPVLSFFKEGKMDEKFIGLTPYSILEK
                     EIKKVKS"
     gene            complement(8059..8496)
                     /locus_tag="ACJFD7_001333"
     CDS             complement(8059..8496)
                     /locus_tag="ACJFD7_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HGG0860136.1"
                     /translation="MKKTILTILFLLTLTQAKEIQVYESPNCGCCDLWADYMKAKGYG
                     VSVHKTNDFLKIKEKMGIKDEYQSCHTGVIEGYAIEGHVPESAIVWLLENKPKDVIGI
                     SAPGMPQGSPGMEQGYSEKYPVILMKKDGSYELYGYFIGDKKL"
     gene            complement(8796..9210)
                     /locus_tag="ACJFD7_001334"
                     /pseudo
     CDS             complement(8796..9210)
                     /locus_tag="ACJFD7_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345036.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         3283 a         1423 c         1491 g         3192 t
ORIGIN      
        1 gctcagcttt tgctagggta gatgattata ttaatgaagc aaatcttatc aaagatatgc
       61 taaaacaaag catagaaact tataaaaagg gcgataatct aggcgccaaa aagcttagcg
      121 aagatgcgta ttttcaacat tttgaaaata tggaaggctc aataggaaga aacataggaa
      181 gaaaagctat cactatggag cgtaaatttg taaatttgcg tcgcatgtat aaagatgaag
      241 ctcctttgac acaaattaat gctttaattg atagtcttta ttatgatctt gatgaagtag
      301 ctccgatttt acaaaatgga tatcgtttaa aagcagaagc aagcgatata aactatgata
      361 aggctaaagc tgaaaaatca agcctagaag ccaatgccaa acgcgaagct gatgcagaag
      421 ctttaatcgc acaaatgatg ggtgtggata aaaaagattt agcacaaagc tctttaacca
      481 cccaagctcc tatacctgta aataatgata caagcaaact tatagatgat aatgcaagca
      541 ctgatttaca agctgccgct gcaatggacg caaaattgca atttatacta gataatatct
      601 ctaccaaatt ttcacaggct gctaatgctt ttaaagaaaa aaactaccaa gctagtaaag
      661 attttttaaa tgatgcctta tttagtgatt atcgcaatac caaagtagaa attttagtaa
      721 ataaatttac caaagcagga aacgatcaaa aaattcaaca agccatacgc acccttatac
      781 gccaaatcaa cgatgcaaaa atagatgaaa aagacttaag agatgactta gataacatag
      841 aagaacaaat ttttgatgtt ttcttacaaa ttccaaattc agaactttca agtttgcaaa
      901 tttcaggctt taatgatgaa acaaaaggca aagattatgc caaagtttct aatgatatca
      961 aacttgcttt agatgaaatt ttaaaaaatt atgatggctt tagcacttct atggtagatg
     1021 atttacaagg aatttatcta gatatttttg aagcaagcgg tatggaaaat aaaatcggtg
     1081 ctgtagatag tggcttaaaa cttaaaatag aaagtttatt ttccaaaggc atggcactga
     1141 ttaaagcaag tgcagataaa aaagagcttg aagctacttt taatgactta gaacaactca
     1201 tagccagcag cgtggataaa attcaagatt ctactcctta ttcgctgttt atatgggctt
     1261 taggtattat tttgcgtgaa ggcttggaag ctttgattat cattgtagcc attgtttctt
     1321 atcttgtgca aagtggcaac aaaaatcgtc taaatatcgc ctatagtgct ctttttacag
     1381 gagtgatttt aagttttatt accgcttttg gagtttcttg gctatttaaa gaaaatgcag
     1441 gtcaaagtag agagcttata gaaggtatta ccatgcttat agccgtatta ctactctttt
     1501 atgtgggctt ttggctactt tcaaacgcac aaaataaaaa atggacaagc tttatcaaac
     1561 aaggtgctat agatgctata tcaaataata gcgcaaaaac cctttggatt accgtatttt
     1621 tagctgttta tagagaaggt gcagaaactg tgctttttta tcaagccttg ctttttgatg
     1681 ctaaaacaag cactgatttt ggtgctgttt ttggcggact tggacttgga attttaatac
     1741 ttattgtttt atattttctt ttaaaagcag gagccattcg catacctgta aaacaatttt
     1801 tctatatcac ttcttacatt attttttaca tggtttttgt ttttacaggc aaaggcatag
     1861 ccgaactcat agaaggaaaa gtcatcattc ctagtcttat acctatgaat tttgaaccga
     1921 ttttatggct tggaatttat ccttactatg aaactttaat ccctcaattt atagttttga
     1981 tcatgctaat tattggcatt ttaataacaa aacaaatttc aaaaaaagga gtaaaatcat
     2041 gataaaaaaa gttttatcag tagttgctgc agctgcggtt attagtacaa atttatttgc
     2101 aggcgaagtg ccgatcggcg atccaaaaga acttaatggc atggaaatag ccgctgttta
     2161 tttacaacct attgaaatgg agccaagagg tattgattta gctgcatctt tagcagatat
     2221 tcacctagaa gctgacattc acgcacttaa aaacaatcca aatggttttc cagaaggttt
     2281 ttggatgcct tatttaacta tagcttatga acttaaaaat accgacacag gtgcaattaa
     2341 acgtggaact ttgatgccta tggtggctga tgatggtcct cactatggtg caaatattgc
     2401 tatggaaaaa gataaaaaag gtggctttgg cgtaggaaat tatgaactta ctttttatat
     2461 ctcaaatcca gaaaaacaag gttttggacg ccatgttgat gaagaaacag gtgtgggtaa
     2521 gtggtttgaa ccttttaaag tagattataa attcaaatac acaggcacgc caaaataatt
     2581 ttacgctcgg attttccgag tgtttgaata tttttatttt tatttgaaaa attaaaataa
     2641 caatgtttaa agagtaaatt atgagtatat attttgtgca ttttcttatc agtgttttac
     2701 cgctaagtat tttaatggcc tttatcactc ctaataaaaa atatattttt aaaagttttt
     2761 tagtagtttt tttgggcttt ttatttggat attttgcttt ttttatcgca gcacaatttt
     2821 taaaaaccga aaatttaatc tttaattttg attttgtttt tataggttta ttgctagtaa
     2881 gctttatatt ttatttttgg aaaaaaattg aaattttaaa ttttatttta ttgggaattt
     2941 taagtttttg caccgctttg cattattatt ttttaagtca agatttccct atttttacta
     3001 gctctttaat cgatagcgaa ggtataagtt ctttaggttt tattgcttta gccttgcttg
     3061 tttgtatttt gattttcttc tttttaaaat ggcaaaaaaa ttttaatcaa aaaacaagct
     3121 ttatgctgtt tttactgctt atccttatag aaagcgataa agctctagcc aatatcttgc
     3181 ttactttaat gcgaaattcc atcatagaaa ctcatacttt tttggtgagt tttgtaggaa
     3241 aaagtaatta ttttggcgtt tttggaattt atatttattt aattttcatc gcttttttag
     3301 cattcttaag cttaaaaatt cgcaaaaaaa atataagcaa aaaacaaatt ttagatataa
     3361 attatcgcaa aaacgaagct aaaacaagtc ttattaatcg ttatttttcc agcgttttta
     3421 tctcctgtgt tataagtttt tgcattattt tatacttttt tatggtaagc tctaagcctt
     3481 taaccataaa tgagcctaaa gaaattttac ccgataagaa tggcaaattt atctttgata
     3541 tagctctttt aagggacaac aaactccacc gctttgctta tatcagtgct gaaggcaaag
     3601 tgataaggtt ttttcttatc aacaaaagag aagataagga ttctcctgta gctgtttttg
     3661 atgcttgtat gatttgtgga gatatgggct atatcaaaaa agatggacaa cttatttgca
     3721 tttcttgcaa tgtgcgtatt ttcttgccta gtgtaggcaa aagcggaggt tgcaatccta
     3781 tcccactcaa atacgaatac gatggtaaaa aaatcaccat agatgttaaa gatgtaatag
     3841 caggatctaa ttattttagt caaatcaaag aaatcgaagt gcaagatcct gtatcaaaaa
     3901 caaaggttat aaacacccaa gctccttttt cttatagcta taaagggatt acttattatt
     3961 tttcaaatca aaacaactat gaagaattta aaaaagatcc tacaaaatat gtagaagaaa
     4021 acgaagccca atttttaatc caaaggagaa acgatgttgg ctaaaatgat ttttaactct
     4081 atatttaaaa acaaaattca aaaattttta gcctttctta cttgtttttt agccacgctt
     4141 ttgctctcta ctatgctaaa tattacccta agtataggcg atgaagtaac taaacaactc
     4201 aaaagttatg gctctaatat ccttgtttta cccaaaggct caagtcttag tatagaaata
     4261 ggtaatgaac tttatgaacc cttaaaaaac aaaaactacc tagaagaaaa aaatttatat
     4321 atgattaaag acatttattg gcgtaacaac atcaccgcac ttgctccttt tttagaaggt
     4381 aaaatcacaa ttgaaaactc ccagcaaaaa gcacttattt atggcactta ttttcaaaaa
     4441 gccataaaaa ttaaagatga tgatgatttt atcacaggta taaaaagtct ttatccttat
     4501 ttagcagtcc aaggagaatg ggcaaaagat gatagcaatg aaatcatgcc aggcgaagac
     4561 tttgctaaaa acaataaatt aaaattagga gatactatca aactcatagg agaaaacaat
     4621 caaagcaaag aagcaaaaat cgtaggtatt ttgcttcatg ccaatcctaa aatgtcaaat
     4681 aaaatcatcg ctcctttaaa tttagctcaa gatttactca acaaacaagg actttactca
     4741 agtgcagaag taagagcttt taccatacct gaatcaaccc tttctgaaaa agtgcgtcgc
     4801 atgggcgaag aaaaattaga tcaattagaa tatgacaaat ggtattgctc agcctatgta
     4861 ggctcaatcg ctagtcaaat tagcgatggc ttaccaggtg ctgatgcaaa agctctaaat
     4921 gctataagcg atgctcaaag cttggtggtc aaaaagatcc aatccttaat gggcattact
     4981 tgcattattt gtcttattgt tgcaagtatt gcgatttcaa gtctaatgag ttctgaaatt
     5041 catcgtagaa aaaaagaaat aggactttta aaagtacttg gtgctaatac ttttcaaatt
     5101 tatctcatct ttgctggtga aaatttaatc gtagctttat ttgctgcttt atttggattt
     5161 atttttggca cagcactttc tcaaatcatc agccttagta tttttggata ttttattgat
     5221 atagccttta tagctttacc tttaagcttt atttttgcag gacttattgc cttactaggt
     5281 tgcttgcttc ctataaaaaa tatcacacaa ctttcagctg caggagtgct ttatggtaga
     5341 taagtttttc cttaatgaac tttttaaaag cattaacttt tcttatcaaa gactttttat
     5401 tatagtttta agtgttttta taggagcact tacttgctca gcttttttaa atatttattt
     5461 tgatattgac accaaacttt ctaaagaatt aaaagcttat ggagcaaatg taatgataag
     5521 tcctaagcgg gatgaaaatt ttatctccaa tgctgagtat gaaaaaataa aagaaaattt
     5581 aaaggctaga gctttaactc cttttttgta tgatttttta aatttaggca gtacaagcgg
     5641 agtagtttta ggcactgatt ttagggcttt aaaaatcact aaaccttttt tagaagttaa
     5701 agaaggaagc ttttctctaa atgattttga tgaaaattca gcctttttag gagttaattt
     5761 agccaagcaa ctaggcctaa aaacaggtaa tgaacttcaa atttacaatc caaacaatgg
     5821 aaaaagcata aaacttacca taaaaggcat actttcaagc aatgatgaat ttgatagcat
     5881 tgttttagcc cctttaagcg tggtgcaaaa tttaagcgat agagccggta ttaactatgc
     5941 taatgctgta gtttatggaa attttgatga agttaaagcc aaaacacaag caatcaacaa
     6001 tgaattcatt gatgcaaaac ctatatcttc agtatcctta agtgaaggtt tagtacttgg
     6061 aaaaatcaaa gctttaatgt ttttaatcat acttgtagta ttgatcatag tcactactag
     6121 cgttaataca actttaagct ctattatatt ttctcgcaaa aaagaaatcg cactgcgttt
     6181 agccttgggt gcgaaaaaaa gtgaaatttt taaacttttt gctagtgaat gctttatagt
     6241 aagttttttt gctagtttaa tcggagcttt ttgtggaata tttttagcca atgtctttgg
     6301 ttatttgatt tttaattcta gtattgattt tagatttata gctgttttta tagccttaat
     6361 catttctttg atttttgcct ttttggctgc attttttcct ataaaaagag cattaaaaat
     6421 caatgtgtgt gaaaatttga aaggtgaatg atgaaaaaag aacttattaa aataaacaat
     6481 ttaaataaag aatttggcaa agttaaagcc ttaaacaata tcaacttaag cgtctatgaa
     6541 ggagaatggc ttgccatcat gggtccatcg ggaagtggaa aatcaacgct tttaaacata
     6601 ctatcattca tggatactcc aagctctgga gagtatatct tggataatga aaacctagag
     6661 caaatggatg aagagcaaaa aatcaccttg cgtcgtgaaa aaataggact tgtctttcaa
     6721 caatttcatc ttatccccta tcttaacgct ttagaaaatg ttatgctctc tcagtactat
     6781 cactcaagtg tagatgaaga agatgccaaa atggttcttg aaaaagtagg actttcacat
     6841 agactcactc atttacctag ccaattaagt ggcggagaac aacaaagagt ttgcatagca
     6901 agagctttga tcaacaaccc agagcttttg ctcgcagatg aacccacagg aaatttagat
     6961 gaagctaatg aacaaatcgt tcttcaaacc ttgcaaaaat taaaaaatga aggcaaaacc
     7021 atagttttaa tcacacacaa tcctgattta gccaaattcg cagatcgaac ccttatctta
     7081 caacatgggg tgttaaaatg aaaaaaagcc ttttaatctt aagcattttg ttcttgctca
     7141 atgcttgttc ttttgaaaat tcaaaagata ctggaaaagt tggagaaaaa agcgctgaaa
     7201 tttcagctaa agatacctta ggaaaagctg taaaacttgc tgatgataat acaagtttaa
     7261 aagtcttagt cttttttcaa aatggctgcc cttcttgctt aaaagaactc ccttctttag
     7321 atgaattcat acaaaatcac cccaataaaa tcagtgttta tgctataaat tccatcgata
     7381 atgccaatgt ggttaaggtt ttagccgaac aatttgactt taaaaatgta aaagttttaa
     7441 aagacgatct taaaatcacc aatgatcgtt acgctgtgtt tgcaacccct actaccatca
     7501 tcattaaaga tggaatgata aaagatagaa ttttaggaga aaaaccatgg gaatttttcg
     7561 aatccaagct tacttctttg ctttaattat agctttattt tttgtagctt gtgatagtgg
     7621 agaaaatttt aaagctttaa atagtgataa aacctataat tttgcctaca atggttttga
     7681 aaaaagccta aaactaaatg ataaagcaca aaattttgcc ttcgtattct tcacaaaaga
     7741 ttgtggagtt tgtaaagaac aaattcctat tttacagaat ttggctaaaa attatgattt
     7801 taatatcttt gtggttttag gcgatgcaaa tgatgcaaac gatgcaaaag cttgggctga
     7861 tgaaaaaggt ttatctaatt tagcaatgtt ttatgaaaaa agagcagcta aatacctttc
     7921 aagtgccatt ggggaaatat atggagtacc tgtgcttagt tttttcaaag aaggaaaaat
     7981 ggatgaaaaa ttcataggct taactcctta tagcatactt gaaaaagaaa tcaaaaaagt
     8041 aaaaagctaa aatttacttt aaagcttttt atctcctata aaatatccat aaagctcata
     8101 gcttccatct tttttcatca aaattacagg atatttttca ctataacctt gttccattcc
     8161 tgggcttcct tgtggcatgc caggagctga aattcctata acatctttag gtttgttttc
     8221 aagcaaccat actatggcac tttcaggaac atgcccttca atagcatagc cttcgatcac
     8281 acccgtatgg caactttgat actcatcttt tatacccatt ttttctttga ttttaagaaa
     8341 atcattggtt ttatgaacac taaccccata acccttagct ttcatataat cagcccaaag
     8401 atcacaacag ccacaattag gactttcata aacttgtatt tccttagctt gcgtaagagt
     8461 gagtaaaaaa agaatggtta aaattgtttt tttcataatt gctatcctaa gtaaaaaata
     8521 tataataata cttttataaa gttaatatca tcacattttt aacactaaaa atgaatttac
     8581 aaaaatttaa tcaagaaaaa gatttttaat gagtgctgat tttgtcttta cagcaaagat
     8641 ataaaagata aaacgattta aaaaactaga aatttttaac ttaaaaagct taaaatttag
     8701 atatacttta tacttactat gttttttcat agtatgttct aatagtggat ttccgccaag
     8761 agtgaaaact caaggcggat ttttatttgc aatatttact taatagaata attatgatca
     8821 gctgtgcctc cacataaata ccccttctta tcaaaacttg caatttcgca agaaagagta
     8881 gataatctag ctcttttacc attgctagtt aatataagaa cttgtttata ataaacataa
     8941 ttttttatct gaatattctt tttgtattat agcttgagtt gaattataag ttcttggacc
     9001 aacttttgca acaatatctg cttcataaaa agttgccttt ttaaaaagtg gctcagttaa
     9061 agttgatttt atactctctt ggaaatattt gttttgcatt tcgcttgctg aaactggaac
     9121 taaatctttt ttattgataa ctatcaaatc tgcaaatgct gacacattca aagcaaccaa
     9181 agctgctaaa actaaaccta attttttcat tttatctcct tgaattgaat tttgtatatt
     9241 tgaattattt ttcaaatctt ttgcaagata atttttaaat ttatctaaat taaatttgca
     9301 ttttatctaa caatcataag aaattttaaa atgaaataaa aatttatgag aaatcaactc
     9361 ttgtttgaaa atgataaaag taagtggtg
//
LOCUS       DBBXPZ010000066         9185 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.068, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000066 DBBXPZ010000000
VERSION     DBBXPZ010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9185)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9185)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9185
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.068"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..1311
                     /locus_tag="ACJFD7_001335"
     CDS             <1..1311
                     /locus_tag="ACJFD7_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HGG0860137.1"
                     /translation="KKQLSLTRLSFPIFWDLLSKYLTVIINTAMVSHYSNFLVGAMGA
                     GNQILDLFITIFSFLSVGCSVLIAQAIGAKDHVLARKVIHQSLFLNALLGFVCGVLIL
                     WHGEYLLYLLKIPQELLKDSEIYLHMLAICLFFDAIGIVLAAIVRVYNMAYWVMFIGF
                     LMDIVVICGNYYVLHYTKSELFGVGLSNIFARIVAIVALFAILFYKLKIHLKIKEMIK
                     LEKEVLKKVLNIGGFSAGENLLWIVQYTIAFAFVASLGEASLSVQTIYFQISMLIMLI
                     GQATSIANEIIVGKLIGARYENIAYKHAWRALYFSVIASALVAFLNYLCQDFTMQILG
                     LKEELKNLMIPLFALSIFLEISRTFNIVMVNSLRASGDAKFPFFSGLVFMMGVSLPVG
                     YVLCFHFNLGILGVWIGFCADEFLRGMVNSYRWKSKKWQGKALV"
     gene            1287..1934
                     /locus_tag="ACJFD7_001336"
     CDS             1287..1934
                     /locus_tag="ACJFD7_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgjP-like metallopeptidase domain-containing
                     protein"
                     /protein_id="HGG0860138.1"
                     /translation="MARQSSSLKSFIYKDECYFYSKKCIKTLRLRLNEKGEFVLSIPY
                     FCTFKSVYEFLDKSSSWMNEAKKRFEKKVLKDDELIFLAKKYKIIFDENTKKTYFDKD
                     KIICQNKAKLDLFLRQNAKKIFTFYLKKWSQKTGLFYTHLSIKNMKTRWGSCNHNKAY
                     VNLNLKLIQKSLRAIEYVILHEISHLKFPNHSKEFYTFIEHFMSDFRQREKEFLS"
     gene            1976..3496
                     /locus_tag="ACJFD7_001337"
     CDS             1976..3496
                     /locus_tag="ACJFD7_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860139.1"
                     /translation="MTLDFDFIYNADNDIFEYLLRFYAKNYNYILSKEENTYHFSIDA
                     DEENLKTFCDSLNFMSHSVFLKKFDVKAGQGFNPCIPEDKEFSRFSYITHLNSNAYQE
                     KKLLNKNEWGVFCECEFSSNLSEFEKINEENFNTFLNLVFDLLSQEKKIYLKDKNGIY
                     EFSLFKNEFIGDFLLPCDIKAINSVFVCSNENLKLLASLEKPLMKLRLNAMFRKNHNL
                     DFSDFKIRLARDLFCFALGLKLFENEYKFLSVKKIEEYQKDFYISALDEQVVVLEGFE
                     FINAKARELIFSKEDKNMARISYLVSRYKEKAFILELSKDYEDILLINKELNLLKLCL
                     PKHSKELYEEIKKDEIGARLLENFNKEFPLLDENFELQNNFYSLLGLLGRVLNLGRNL
                     QESASELLKIADESKMPRGVKIDYRLKEDKSFDYTRTLRSAMSFMLAGVDSANIAYGA
                     VESLAYFLRDTYDELREKKQSDLALISGSLFEHKSLLKNTLKHLKNCQLSDVPLRI"
     gene            3477..5666
                     /gene="hypF"
                     /locus_tag="ACJFD7_001338"
     CDS             3477..5666
                     /gene="hypF"
                     /locus_tag="ACJFD7_001338"
                     /EC_number="6.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003998 - acylphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0016743 - carboxyl- or
                     carbamoyltransferase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HGG0860140.1"
                     /translation="MCHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGIE
                     IILACTQKECENFIENLKNHLPPLARIDQLIITQISISNYENFSITPSLENTKSTPML
                     SDFALCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRAHTSMQELLMCEF
                     CKSEYEDPKNRRFHAQPISCPKCKINVFLKNPKGEILAKDQEAFIQSAKFLKEGKILS
                     IKGIGGFHLMCDAFNEEALKTLRLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLG
                     GVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFKGSLVATSANLSGESI
                     IKDEFNLCKKLDKVFDFYLDYDREIINASDDSIAQVVNGETMFLRTSRGLNPFYLERN
                     FNKKGTFLALGAELKNEFVIFYENKLLISPYIGDLKSLDVHERFFKLLEFFKQNYDLK
                     FDAILCDKHPHFSYAKEFEERIKISHHYAHFCAAYFEYEENFAKDEKALAFICDGTGY
                     GEDGKIWGGEVFVGNLKEYERIAHFENFTLINSDIKNIQNLALSLIFHYDLEDKAKDF
                     LAKIPKIKLKNLKKIYSHSNLQTSSLGRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYD
                     KNLDFSYKLFVEKGQVNFKNLILGALQDEKTKAITGMFNALANFIIDFSKDYDLKVLL
                     SGGVFQNKTLLEILKAKNFDFFIPLKYPCNDSSIALGQMVHFLNLEK"
     gene            5744..6487
                     /gene="hypB"
                     /locus_tag="ACJFD7_001339"
     CDS             5744..6487
                     /gene="hypB"
                     /locus_tag="ACJFD7_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA];
                     GO_process: GO:0051604 - protein maturation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HGG0860141.1"
                     /translation="MCKDCGCSINSSHTHGHHYDHHHENPSLKESKTIEVISKILSKN
                     DEEAKHNRAHFNEANTLCINLMSSPGSGKTTLLESTIKALKNELKIAVIEGDLETNND
                     ALRVKNAGALAYQITTGQSCHLDAFMVHEALHHLAIDDVDLLFIENVGNLVCPASYDL
                     GEHLNVVLLSVTEGSDKPQKYPVMFKKADIVLITKADLAHHFDFDVKEATRLIKELNP
                     RADIITLDAKNGTNMELWYKVLKLKKELF"
     gene            6487..6768
                     /locus_tag="ACJFD7_001340"
     CDS             6487..6768
                     /locus_tag="ACJFD7_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HGG0860142.1"
                     /translation="MCLSIPSEILEIDELNNALVQTLGVKRKVNLDLIDEPLKQGDYV
                     LIHVGVAMEKIDKEAALESIKTYQEIVEKMNSGEIKSDEGDLGLNEFHR"
     gene            6752..7843
                     /gene="hypD"
                     /locus_tag="ACJFD7_001341"
     CDS             6752..7843
                     /gene="hypD"
                     /locus_tag="ACJFD7_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HGG0860143.1"
                     /translation="MNFIDEFRDKESILALKKLIEQELKNPINIMEICGGHTHSIMKY
                     ALPSILPKEINFIHGPGCPVCVMPRVRIDTAIKLASMKDTIFCTLGDLLRVPGSEISL
                     LDLRAKGADVRALYSPLEVLEIAKQNLNKNIIFFAIGFETTTPMSALLLQKVIEEKIN
                     NVFFHINHITVPAPVEAIMNDENVKINAFLGPSHVSVITGYGIYEPLAAKFKTPIAVS
                     GFEPVDILESVLNIIKQSNEGTFKVYNQYKRAVSKEGNVKAQNLVKKYFRVCDFEFRG
                     LGLIKDGGLELKEEFSAYDASKKFDCTVQSKNESKACICGQILRGLAKPYDCKVFGKA
                     CTPRSPIGSCMVSGEGACAAYYKYSKVNA"
     gene            7840..8814
                     /gene="hypE"
                     /locus_tag="ACJFD7_001342"
     CDS             7840..8814
                     /gene="hypE"
                     /locus_tag="ACJFD7_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HGG0860144.1"
                     /translation="MKNISLAHGGGGEEMNELLTKLFKIFDNEILNANNDAAILGNLA
                     LSTDSFVLSPIFLDEEVNIGKLCVCGSINDVLMVGAKPKYLSLGLILEEGFELEKLER
                     ILKSIKEECEKCGVMLVCGDTKVVPKGKADEIYINTTALGEIISKKESKNIKAGLSIL
                     LSGDIGRHGASVLIKRNELEADIKSDCKALNKEVLELLEKDIKVVAMRDATRGGLSAV
                     LNEWAKQSGNDLLIFEEKIIVQDEVLGLCELFGYEAYELANEGTFILCVEKEDELKAL
                     EILKKYNVNASIIGEVLEEKKARVILQNAYGAKRFLESPKGELLPRIC"
     gene            8814..9158
                     /gene="hypA"
                     /locus_tag="ACJFD7_001343"
     CDS             8814..9158
                     /gene="hypA"
                     /locus_tag="ACJFD7_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008901 - ferredoxin hydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HGG0860145.1"
                     /translation="MHELSIVESLIELCEENALNNKACNVQEIYVKIGRLSGIEVDLF
                     KRCFETFKENSNICKNAKLFIELAPLEILCLKCDQTSILEENVFKCPKCQSIEYKIIQ
                     GEDLHLMRLVMK"
BASE COUNT         3174 a         1080 c         1758 g         3173 t
ORIGIN      
        1 aaaaaacaac tctccttaac aagacttagt tttcctatat tttgggattt gctttctaag
       61 tatttaactg tgattatcaa taccgctatg gtgtcgcatt attctaattt tcttgttggt
      121 gctatgggcg ctggaaatca aattttagat ctttttatca ctattttttc atttttaagt
      181 gtgggttgta gtgtgctgat cgcacaagca attggtgcaa aagatcatgt tttagcaaga
      241 aaagtgattc atcaaagttt gttcttaaat gcacttttag gctttgtatg cggtgtgctt
      301 attttatggc atggggagta tttgctttat cttttaaaaa ttccacaaga attgctcaaa
      361 gatagcgaaa tttacttaca tatgcttgca atttgtttgt tttttgatgc cataggtatt
      421 gttttagctg ctattgtaag ggtttataat atggcttatt gggtcatgtt tataggtttt
      481 ttgatggata tagtggtgat ttgtggaaat tattatgttt tgcattatac aaagtcagaa
      541 ctttttggag tagggcttag caatattttt gctcgcattg ttgctatagt tgctttgttt
      601 gcgatacttt tttataaact taaaattcat cttaaaatca aagaaatgat aaaacttgaa
      661 aaagaagttt taaaaaaggt tttaaatata ggtggatttt cagcagggga aaatcttttg
      721 tggatagtcc aatatactat agcttttgct tttgtagcaa gcttaggtga ggcgagtttg
      781 agtgtgcaaa cgatttattt tcaaatttca atgcttatca tgcttatagg acaagctacg
      841 agcatagcta atgaaattat agtaggtaaa ttaatcggtg ctaggtatga aaatatcgct
      901 tataaacatg cttggcgtgc tttatatttt agtgtaatag cgagtgcttt agtggcgttt
      961 ttaaactatc tttgtcaaga ttttactatg caaattttag ggcttaaaga agagctaaaa
     1021 aatttaatga tacctttatt tgctctttca atctttcttg aaatttcacg aacttttaat
     1081 atagtcatgg tcaattcttt gcgtgcaagt ggcgatgcta agtttccatt ttttagcgga
     1141 cttgttttta tgatgggggt atctttgcct gtgggttatg tgctttgttt tcattttaat
     1201 cttggaattt taggggtttg gataggattt tgtgcagatg agtttttgcg tggaatggta
     1261 aattcataca gatggaaaag taaaaaatgg caaggcaaag ctctagttta aaatcattta
     1321 tttataaaga tgagtgctat ttttattcta aaaaatgcat aaaaacttta agattaaggc
     1381 taaatgaaaa gggtgaattt gttcttagta ttccttattt ttgcaccttt aaaagcgttt
     1441 atgagttttt agataaatca agttcttgga tgaatgaggc aaaaaaaaga tttgaaaaaa
     1501 aagttttaaa agatgatgag ttaatctttt tagctaaaaa atataaaatt atttttgatg
     1561 aaaataccaa aaaaacttat tttgataaag ataaaataat ttgtcaaaat aaagcaaaat
     1621 tagatttatt tttaagacaa aatgctaaaa agatttttac tttttatctt aaaaaatgga
     1681 gtcaaaaaac aggtttattt tacacgcatt taagcattaa aaatatgaaa acgcgttggg
     1741 gttcatgtaa tcacaataaa gcttatgtta atttaaattt aaaactcatt caaaagagtt
     1801 taagagctat tgaatatgtg attttgcatg aaatcagcca tttaaaattc cccaatcata
     1861 gcaaagaatt ttatactttt atagagcatt ttatgagtga ttttaggcaa agagagaaag
     1921 aatttttaag ttaaaaatgt tatatttata gtttattttt caaaaaaggc ataatatgac
     1981 tttggatttt gattttattt ataatgcaga taatgatatt tttgaatatt tattgcgttt
     2041 ttatgcgaaa aattacaatt atatccttag caaagaagaa aatacctatc atttttctat
     2101 cgatgcagat gaagaaaatt taaagacttt ttgtgattct ttgaatttca tgagtcatag
     2161 cgtttttttg aaaaaatttg atgtaaaagc ggggcagggt tttaaccctt gtataccaga
     2221 agataaagaa ttttcaagat tttcttatat tactcattta aattctaatg cttatcaaga
     2281 aaaaaaactt ttaaacaaaa acgaatgggg cgtgttttgt gagtgtgaat tttcaagcaa
     2341 tttatcagaa tttgaaaaaa tcaatgaaga aaatttcaat acttttttaa atcttgtctt
     2401 tgatttgtta agtcaagaaa aaaagattta tttgaaagat aaaaatggta tttatgaatt
     2461 ttctttgttt aagaacgaat ttataggaga ttttttactt ccttgtgata ttaaggctat
     2521 aaattcagtt tttgtttgtt caaatgaaaa tttaaaactt cttgcaagtt tagaaaaacc
     2581 tttgatgaag ctaaggctta atgctatgtt tagaaaaaat cacaatcttg attttagtga
     2641 ttttaaaatc agacttgcta gagatttgtt ttgttttgct ttaggtttga aactttttga
     2701 aaatgagtat aaatttttaa gcgtaaaaaa gatagaagag tatcaaaaag atttttatat
     2761 cagtgcttta gatgagcaag tggtggtttt agagggtttt gaatttatca atgctaaggc
     2821 aagagagctt attttttcta aagaagataa aaatatggca agaatttctt atcttgtaag
     2881 ccgttataaa gaaaaagctt ttattttaga gctaagtaag gattatgaag atattttgct
     2941 tatcaataaa gagcttaatt tacttaaact ttgcttacca aaacacagca aagaacttta
     3001 tgaagagatt aaaaaagatg aaattggtgc aaggctttta gaaaatttta acaaggaatt
     3061 tcctctttta gatgaaaatt ttgagcttca aaacaatttt tattccttgc ttggcttgct
     3121 gggtagagtg ctaaatttgg gtagaaattt acaagagagt gctagtgagc ttttaaaaat
     3181 cgctgatgag tcaaaaatgc ctcgtggagt aaagattgat tatcgtttga aagaagataa
     3241 aagttttgat tatacaagaa ctttaagatc tgctatgagt tttatgttag caggtgtaga
     3301 tagtgctaat atcgcttatg gagcggttga gagtttggct tatttcttgc gtgatactta
     3361 tgatgaatta agagagaaaa agcaaagtga cttagcgctt ataagtggtt ctttgtttga
     3421 acataaatct ttacttaaaa atactttaaa acatcttaaa aattgtcagt taagcgatgt
     3481 gccacttagg atataagatc aaaatttcag gtctagttca aggggtgggt tttcgcccct
     3541 tagtttatga actagctttg aaatcaaagc tttttggaga agtaagaaat gatggttttg
     3601 ggatagaaat catccttgct tgcactcaaa aagaatgtga aaatttcata gaaaatttaa
     3661 aaaatcatct cccgccttta gcaagaatag atcagcttat aatcacgcaa atttctattt
     3721 caaactatga aaattttagc atcactcctt ctttagagaa tacaaaaagc acgcctatgt
     3781 taagcgattt tgcactttgt aaggagtgta aaaaagaatt ttttgatgaa aaaaatccac
     3841 gctttttata tccttttatc acttgcacac attgtgggcc acgctttagt attataaaaa
     3901 gtcttcctta tgatagagcc catacttcca tgcaagaatt attgatgtgt gagttttgta
     3961 aaagcgaata cgaagatcct aaaaataggc gttttcatgc ccagcccatc agttgtccta
     4021 agtgtaaaat caatgttttt cttaaaaatc caaagggtga aattttagcc aaagatcaag
     4081 aagcttttat acaaagtgcg aagtttttaa aggaaggtaa aattttatcc ataaaaggca
     4141 taggtggttt tcatctcatg tgtgatgcgt ttaatgaaga agctttaaaa actctaagac
     4201 ttagaaaaaa tcgccctaaa aaaccctttg ctttgatgtg taaagattta caaagtgcta
     4261 aagaacttgc ctttatagat gaaaaagaag aagctttgct tggtggggtt ttagctccta
     4321 ttgtgatttt aaaggcaaaa aaagcctttt ctttaatcgc tcctgatgtt gataaaatcg
     4381 gtattatgtt agcttataca cctttacatc ttttgctttt tgagtatttt aaaggaagcc
     4441 ttgtagcaac gagtgcaaat ttaagcggag aaagtattat taaagatgag tttaatttgt
     4501 gtaaaaaact tgataaagtt tttgattttt atttggatta tgatagggaa attatcaatg
     4561 caagtgatga cagcatagct caagtggtaa atggtgaaac tatgtttttg cgtacttcaa
     4621 ggggtttaaa tcctttttat ttggaaagaa attttaataa aaaaggcact tttttagctt
     4681 taggtgcgga acttaaaaat gaatttgtga ttttttatga aaataaactt ttaatttctc
     4741 cttatatagg ggatttgaaa agtcttgatg tgcatgagag attttttaaa cttttagaat
     4801 tttttaaaca aaattatgat ttgaaatttg atgcgatttt gtgcgataaa cacccgcatt
     4861 ttagctatgc aaaagaattt gaagaaagga ttaaaatttc tcatcattat gcgcattttt
     4921 gtgcggctta ttttgaatac gaagaaaatt ttgcaaaaga tgaaaaggct ttagctttta
     4981 tttgtgatgg aacaggttat ggcgaagatg gtaaaatttg gggtggagaa gtttttgtag
     5041 gaaatttaaa agaatatgaa agaattgcac attttgaaaa tttcactctt ataaatagtg
     5101 atattaaaaa tatacaaaat ttagccttaa gtcttatttt tcattatgat ttagaagata
     5161 aggctaagga ttttttagca aaaattccaa aaattaaact taaaaatctt aaaaaaattt
     5221 attctcattc taacttacaa acaagttctt taggacgcat tatcgatgct tttggaagta
     5281 ttgtttttaa cttagaaaaa agttcttatg aagctcaagt tggcttaatg tgtgaagctt
     5341 tttatgataa aaatcttgat ttttcttata agctttttgt agaaaaaggg caggttaatt
     5401 ttaaaaattt aatcctaggg gctttgcaag atgaaaaaac taaggcgatt acaggtatgt
     5461 ttaatgcctt ggcaaatttt atcatagatt ttagcaaaga ttatgattta aaagtgcttt
     5521 taagcggagg ggtttttcaa aacaaaacct tgcttgaaat tttaaaagct aaaaattttg
     5581 atttttttat acctttaaag tacccttgta atgatagctc catagcctta ggacaaatgg
     5641 tgcatttttt aaatttagaa aaataaagca aatattctaa aaactcataa ttttttaatg
     5701 cttttaaggt taaaatgaaa caaaaaatat ataaggaaag aaaatgtgta aagattgcgg
     5761 ctgctctata aattcaagcc atacgcatgg tcatcattac gaccaccatc atgaaaatcc
     5821 aagtttaaaa gaaagcaaaa ccatagaagt gatttctaaa attttaagca aaaatgatga
     5881 agaagctaag cacaatagag cgcattttaa tgaagctaac acgctttgta tcaatttaat
     5941 gagttctcca ggtagtggaa aaaccacgct tttagaaagc acgattaagg ctttgaaaaa
     6001 tgaacttaaa attgctgtga ttgaagggga tttagaaacc aataatgacg ctctaagggt
     6061 aaaaaatgcc ggagctttgg cgtatcaaat cactacagga caaagctgtc atttggacgc
     6121 ttttatggtg catgaggctt tgcatcattt agccattgat gatgtggatt tgctttttat
     6181 agaaaatgtt ggaaatttgg tttgtcctgc aagttatgat ttaggagagc atttaaatgt
     6241 ggttttgctt tctgttaccg aaggaagcga taaaccgcaa aaatatcctg tgatgtttaa
     6301 aaaggctgat atagttttaa tcacaaaggc agatttagct catcattttg attttgatgt
     6361 taaagaggcg actaggttga ttaaagaatt aaatcctaga gcagatatta tcacccttga
     6421 tgcaaaaaat ggcaccaata tggagctttg gtataaggtg cttaaactta aaaaggagct
     6481 tttttaatgt gtttgtctat accttctgaa attttagaaa tcgatgagtt aaacaatgct
     6541 ttagtacaaa ctttaggcgt gaaaagaaaa gttaatttgg atttgattga tgaaccttta
     6601 aaacaaggcg attatgtctt aatccatgta ggcgttgcta tggaaaaaat cgacaaagaa
     6661 gctgcactag aaagcattaa aacctatcaa gaaatagtag aaaaaatgaa tagtggagag
     6721 ataaaaagtg atgaaggaga tttgggttta aatgaatttc atcgatgaat ttagagataa
     6781 agaaagcatt ttagctttaa aaaaactcat agaacaagaa cttaaaaatc ctattaatat
     6841 catggaaatt tgcggtgggc atacgcatag tatcatgaaa tatgctttgc cttctatttt
     6901 gccaaaggaa attaacttta tccatgggcc aggatgtcct gtttgtgtta tgccaagagt
     6961 tcgcattgat acagctatca agttagcctc catgaaagat acgatttttt gtactttagg
     7021 ggatctttta agggtgcctg gaagtgaaat ttctttactg gatttaagag ctaaaggggc
     7081 tgatgttaga gcgctttatt ctccgcttga ggttttggaa attgctaagc aaaatttaaa
     7141 caaaaatatc atcttttttg ctataggttt tgaaactact acgcctatga gtgctttact
     7201 tcttcaaaag gttatagaag aaaaaataaa taatgtcttt tttcatatca atcatatcac
     7261 agttccagca cctgtagaag cgatcatgaa tgatgaaaat gtaaaaatca atgctttttt
     7321 aggtccttct catgtgagtg tgataacagg ttatggtatt tatgagcctt tagcagcaaa
     7381 atttaaaacc cctatagcgg tgagtggttt tgagccagtt gatattttag aaagtgtgtt
     7441 aaatatcata aaacaaagca atgaaggcac ttttaaagtg tataatcaat acaaaagagc
     7501 cgtaagcaaa gaaggcaatg ttaaagcaca aaatttagta aaaaaatact ttagggtgtg
     7561 tgattttgaa tttcgtggct taggacttat taaagatgga ggcttggagt taaaagaaga
     7621 atttagcgct tacgatgcga gtaaaaaatt tgattgtacg gtgcaaagta aaaatgaaag
     7681 caaagcctgt atttgtgggc aaattttaag aggtttggcc aagccttatg attgtaaagt
     7741 ttttggcaag gcttgtacgc caagaagtcc tataggaagt tgtatggttt ctggcgaggg
     7801 tgcttgtgcg gcgtattata aatactcaaa ggtgaatgca tgaaaaatat ttccttagcc
     7861 cacggaggcg gtggagaaga gatgaatgag cttttaacta agctttttaa gatctttgat
     7921 aatgaaattt taaacgcaaa taatgatgca gcgattttgg gaaatttggc tttaagcacg
     7981 gattcttttg ttttaagtcc gattttttta gatgaagagg ttaatatagg taaactttgt
     8041 gtttgtggtt ctattaacga tgttttgatg gtgggtgcta agccaaaata tctaagctta
     8101 gggcttatct tagaagaagg ttttgagcta gaaaaattag aacgtatttt aaaaagcatt
     8161 aaagaagaat gtgaaaaatg tggagttatg ttagtttgtg gcgatactaa agttgttcct
     8221 aagggtaaag cagatgaaat ttatatcaac actacagcct taggtgaaat tatttctaaa
     8281 aaagaaagta aaaatatcaa agcagggctt agcatacttc tttcaggcga tataggaagg
     8341 catggagcta gtgttttaat caaaagaaat gagctagaag ctgatattaa aagtgattgc
     8401 aaggctttga ataaagaggt tttagagctt ttagaaaaag atataaaggt tgtggccatg
     8461 agagatgcta ctcgcggggg gcttagtgcg gttttaaatg agtgggcaaa gcaaagtgga
     8521 aatgatcttt tgatctttga agaaaaaatc atcgttcaag atgaggtttt aggactttgc
     8581 gagctttttg gttacgaagc gtatgagctt gcaaatgaag gcacttttat actttgtgtg
     8641 gaaaaagaag atgagttaaa agccttggaa attctaaaaa aatacaatgt aaatgcgagt
     8701 attataggag aagttttaga agagaaaaaa gcacgcgtga tcttacaaaa cgcttatgga
     8761 gcaaaacgct ttttagaaag tcctaaaggc gaacttttac caagaatttg ctaatgcacg
     8821 aattaagtat agtagaatct ttaatcgaac tttgcgaaga aaatgcctta aacaataagg
     8881 cttgtaatgt gcaagaaatt tatgtaaaaa tcgggcgttt aagcggtata gaagtggatc
     8941 tttttaagcg ttgttttgaa acttttaaag aaaactcaaa tatttgcaaa aatgctaaac
     9001 tttttataga gcttgctccg cttgaaattt tatgcttaaa atgcgatcaa acaagtattt
     9061 tagaagaaaa tgtttttaag tgtcctaaat gtcaaagtat agaatataaa atcatacaag
     9121 gtgaggactt acatcttatg cgacttgtga tgaaataata tatttggcgt ttttgttaca
     9181 atagt
//
LOCUS       DBBXPZ010000067         9185 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.069, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000067 DBBXPZ010000000
VERSION     DBBXPZ010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9185)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9185)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9185
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.069"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(79..1950)
                     /gene="dnaK"
                     /locus_tag="ACJFD7_001344"
     CDS             complement(79..1950)
                     /gene="dnaK"
                     /locus_tag="ACJFD7_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HGG0860146.1"
                     /translation="MSKVIGIDLGTTNSCVAVYERGESKVIPNKEGKNTTPSVVAFTD
                     KGEVLVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKNRLPYHITERNGACAI
                     EIAGKIYTPQEISAKVLMKLKEDAEAFLGESVTDAVITVPAYFNDAQRKATKEAGTIA
                     GLNVLRIINEPTSAALAYGLDKKDSEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGN
                     AFLGGDDFDNKLIDFLANEFKDETGIDLKNDVMALQRLKEAAENAKKELSSANETEIN
                     LPFITADASGPKHLVKKLTRAKFEGMIDSLVAETITKINEVVSDAGLKKDEIKEIVMV
                     GGSTRVPLVQEEVKKAFNKDLNKSVNPDEVVAIGAAIQGAVIKGDVKDVLLLDVTPLS
                     LGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGN
                     FNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSGLSEEEINN
                     MVKDAELHKEEDKKRKEAVDARNAADSLAHQVEKSLSELGEKVAAADKENIQKALDDL
                     RETLKNQNASKEEIEGKMKALSEVSHKLAENMYKKDEPNTANDKKKKDDDVIDAEVE"
     gene            complement(1973..2503)
                     /gene="grpE"
                     /locus_tag="ACJFD7_001345"
     CDS             complement(1973..2503)
                     /gene="grpE"
                     /locus_tag="ACJFD7_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HGG0860147.1"
                     /translation="MSEQKQEFENENAENSEHLQDENLQNIEDVEQNKLQEDYDELKD
                     KYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAINVECHDEISLKI
                     KEGVQNTLDLFLKKLEKHGVALIKEEKEFDPNLHEAMFHVDSENHQSGEVVTVLQKGY
                     KIADRVIRPTKVSVAK"
     gene            complement(2500..3294)
                     /locus_tag="ACJFD7_001346"
     CDS             complement(2500..3294)
                     /locus_tag="ACJFD7_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HrcA family transcriptional regulator"
                     /protein_id="HGG0860148.1"
                     /translation="MMKSRDKKDLILESIIQTYLLDNVPIGSNELNLNLCIPASTIRV
                     YLKRLSDEGLITQLHISSGRIPTILTMQNYWQSFWKKEQDQDINIKSENFLKELSKEF
                     EIYCLVYGGRSLVLKEVLDLNAKFIVLDFKEEELVLKYEKEAWNFLQSLIGLDLFSIE
                     KIALRVHFIDLVEKIASLRQNLICYRSNEERAYQIYQNDEFVKLLDCGVHRYFKESLE
                     FEPLFKEGFMGLKVDAQFLGEDVNIILAGSVYTDYKKILQYIKEAA"
     gene            complement(3595..5685)
                     /gene="cfrA"
                     /locus_tag="ACJFD7_001347"
     CDS             complement(3595..5685)
                     /gene="cfrA"
                     /locus_tag="ACJFD7_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent ferric enterobactin receptor
                     CfrA"
                     /protein_id="HGG0860149.1"
                     /translation="MKKICLSVCAIGLLSSNAISQNVELDSSIVSASGFTQDIKEAPA
                     TINVITKKELQSKPYRDVAEAIADIPGVDLYASKGKTGSYNITMRGITGYTLVLIDGR
                     RQGIGGEVGPNGFNEISNSFLPPISSIERIEVIKGPMSTLYGSEALGGVVNIITKKVS
                     DKWETSVSLDALLNENKDWGNTYGTSIYSSGPLMNDKLGLTLRFREFYRQQSNVEFTN
                     GSGQRVQGDQAQSPTKANNFNIGTRISYLANDYNTFIFDIDFSRNHYDNKQGQLGTIT
                     SLGSTQGSLTGGYADIMEVDKFVTYLSHEGVYENFSITSTLQYNRVSNDGREVVGQAT
                     QPFLGENRDIVAEDIILDTKSVIPLGQNHILSAGGEYRLEKMQDKIANPTNFDQYLLA
                     IFAEDEYSIKDDLRLTFGARYNHHEIFGNNVSPRAYLVYNPTNELTLKGGVSTGFRTP
                     YANRLINGAYNYSGQGRFPIYGNPDLKEETSLNYEIAAIYNNDLFYVSATGFLTNFKD
                     KISTQRYNKDNMIPGIGACGANRCFKAINHGKVEYKGIELGAGISPLDNLNVNFAYTY
                     LDSEVKEAQDKSVIGKPEQDSLKHNIMLKTEYSFYNKFTPWIKGEWQIDRYMGDTNIN
                     REYYKDIFLASMGVRYDINKQWSINAAIYNLFDKSFTNGWESYASGSGSTWVNTYNRI
                     EEGRRMYISINGNF"
     gene            6011..6694
                     /locus_tag="ACJFD7_001348"
     CDS             6011..6694
                     /locus_tag="ACJFD7_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HGG0860150.1"
                     /translation="MKTFISNHKNQSSFITLFVFTPLFFVFLYSKDFLHIQPNETIKE
                     NKFNMAIKHFVQNSSDMKPTQPTQTIQEPSNVQPKEPVQEIKKIKPRKEKPIAKPKKI
                     IPPANAKAISQPKKDTNMQQQTPQASSYQSVSLTSNSELLKEIKSAIDEALIYPRQAR
                     KMRMSGEVLVEFTWTKEKKLENLKILKPSKYDFLNKSALETIRIASKKFPQYEKTFHI
                     KIPLVYKLS"
     gene            complement(6786..7340)
                     /locus_tag="ACJFD7_001349"
     CDS             complement(6786..7340)
                     /locus_tag="ACJFD7_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-guided endonuclease InsQ/TnpB family
                     protein"
                     /protein_id="HGG0860151.1"
                     /translation="MQRKQSRRILKTKKEKTKLSHNFKKTQLKLNKIYEKSSNIKKDS
                     YHKITSKLIQEFDLLAVEDLQIKNMCKRAKLKNIKAKSGLNKSILNTSFYQFSQYLEY
                     KAKHNGKFFIKVNPQYTSKTCSVCGNIKKNLMFKDRVYLCEKCGNTLHRDINAANNIL
                     KRGLKSFGLGISLEDYKLKAFRIS"
     gene            complement(7345..7608)
                     /locus_tag="ACJFD7_001350"
     CDS             complement(7345..7608)
                     /locus_tag="ACJFD7_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HGG0860152.1"
                     /translation="MNTFFKMRYHRDLPNTYKFNQITIIKNHNKYYLAFSIIYDESNV
                     SLISSKDFDIKKAVDIDLNINEITLSSGELIATNSKLLSRAEY"
     gene            complement(8039..8133)
                     /locus_tag="ACJFD7_001351"
                     /pseudo
     CDS             complement(8039..8133)
                     /locus_tag="ACJFD7_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344161.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         3062 a         1691 c         1122 g         3310 t
ORIGIN      
        1 aatttttaaa aattaaataa gataaaatag aattgagttc aagcctttta acaaggcttg
       61 aatgaagatt ttagaagatt actcaacttc agcgtcgatt acatcgtcat cttttttctt
      121 tttatcattg gctgtgtttg gctcatcttt tttatacata ttttcagcta acttatgaga
      181 aacttcactt aaagctttca ttttaccttc aatctcttct ttgcttgcat tttgattttt
      241 caaggtctca cgcaaatcat caagagcctt ttggatattt tctttatcag cagcggcaac
      301 tttttcaccc aactcactta aagatttttc tacttgatga gccaagctat cagctgcatt
      361 tctagcatct acagcttctt tgcgtttttt atcttcttct ttgtgaagtt cagcatcttt
      421 taccatgttg ttaatttctt cttcgctaag tccgctcgaa cctgtgattt tgatctcttg
      481 agccttacct gttgctttat cttttgcact aacagttaaa ataccatttg catcgatatc
      541 aaaagtaact tcgatttgtg gcataccgcg tggtgctggt ggaattcctt caaggttgaa
      601 atttcctaaa gatttattat ctcgactaaa ctctctttcc ccttgtaaaa cattgatagt
      661 aacagcactt tgattatctt cagcggttga gaaaacttgc tcttttttag ttggaatagt
      721 tgtacctttt tcgataatct tagtcattac cccgcctaga gtttctatac ccaaagagag
      781 cggagtaaca tcaagtaaaa gcacatcttt aacatcgcct tttataaccg caccttgaat
      841 cgccgcacca atagctacaa cttcatcagg atttacagac ttgttaagat ctttattaaa
      901 ggcttttttc acttcttctt gcactaaagg aacacgagta gagcccccta ccataacaat
      961 ttctttaatt tcatcttttt taagacctgc atcgcttact acttcattga ttttagtgat
     1021 ggtttcagcc actaaagaat caatcatacc ttcaaattta gctctagtaa gttttttaac
     1081 caaatgtttt ggcccacttg catctgctgt gataaatggt aaattaattt cagtttcatt
     1141 agctgagctt aattcttttt tagcattttc tgctgcttct ttcaagcgtt gcaaagccat
     1201 aacatcattt ttaagatcta tgcctgtttc atctttaaat tcattagcta gaaaatctat
     1261 aagtttatta tcaaaatcat caccacctaa gaaagcgtta ccacctgttg ctaaaacttc
     1321 tactacatta tcgccagttt caagcacagt aacgtcaaaa gttcccccac ctagatcata
     1381 aaccacaatt ttttcactat cttttttatc aagtccgtaa gctaaagctg ctgaagtagg
     1441 ctcgttgata attcttaata cattaagtcc tgcgatagtc cctgcttctt tcgttgcttt
     1501 tctttgtgca tcattaaaat acgcaggcac agtaatcacc gcatcagtaa cactttcacc
     1561 caaaaaagct tctgcatctt cttttaattt catcaaaact tttgctgaaa tttcttgtgg
     1621 ggtgtaaatt ttacctgcga tttctatcgc gcatgcacca tttctttcgg tgatgtggta
     1681 aggaagtcta tttttggctt ctttagccgc atcttcattg atcatcaaac ccataattct
     1741 tttgatagaa taaatagttt tttcagggtt tgttaccgct tggcgttttg cgctatcgcc
     1801 tactaaaact tcacctttat ctgtaaaagc aactactgaa ggagttgtgt tttttccttc
     1861 tttgtttggg attactttgc tctcgccgcg ttcatacaca gcaacacaag aattggttgt
     1921 tcctaaatct atacctataa ctttactcat tttttatcct ttttattaaa atttattttg
     1981 ctacactaac tttggttggg cggatcacgc gatcggctat tttataacct ttttgaagca
     2041 cggtaaccac ttcaccactt tgatgatttt cactatctac atgaaacatt gcctcatgta
     2101 aatttggatc gaactctttt tcttctttga taagagccac tccatgcttt tcaagttttt
     2161 taagaaacaa atctaaagtg ttttgcactc cttctttgat ttttaagcta atttcatcat
     2221 gacattcgac attgatagct gcttctaaag catctaaaac atcaagcaaa tcctttgcaa
     2281 agctttcatt tgcataagcc atagcactta gcttttcttt ttccattctt tttttaatat
     2341 tttcaaattc agcgtttgca cgcatatatt tgtcttttaa ttcatcatag tcttcttgca
     2401 atttgttttg ctcaacatct tcgatatttt gcaaattctc atcttgcaaa tgttcagaat
     2461 tttctgcgtt ttcgttttca aattcttgct tttgctcgct cacgccgcct cctttatgta
     2521 ttgtaatatt tttttataat ccgtataaac actacctgct aagataatat ttacatcttc
     2581 gcccaaaaac tgcgcatcca ccttaagccc cataaaacct tctttaaata aaggttcaaa
     2641 ttcaagactt tctttaaaat aacgatgaac tccacaatct aagagcttaa caaattcatc
     2701 attttgataa atttgataag ctctttcttc attgcttcta tagcaaatca aattttgtct
     2761 taagctagct attttttcta caagatctat aaaatgaact ctcaaagcta ttttttctat
     2821 actaaaaaga tcaagcccta taagactttg taaaaaattc catgcttctt tttcatattt
     2881 taaaacgagc tcttcttctt taaaatcaag tactataaac ttagcattta gatcaagtac
     2941 ttctttaagt actaagcttc taccaccata aacaagacag taaatttcaa attctttact
     3001 caactctttt aaaaaattct cacttttgat attgatatct tgatcttgtt cttttttcca
     3061 aaaactttgc cagtaatttt gcattgtcaa aatagtagga attctaccac tacttatatg
     3121 aagctgagtg atcaaaccct cgtcgctaag ccttttaaga tagacgcgta tagttgaagc
     3181 agggatgcaa agatttaaat tcaattcatt tgaaccaata ggaacattat ctaaaagata
     3241 agtttggata atagactcta aaatcaaatc ctttttatct cgacttttca tcatgttttc
     3301 ctttaaagct agcactctat tttttgattg ctagatatat tatacaacat tgagtgttat
     3361 tttgtcaagt ataaatataa aaaaatatac ttaattttat ttagtctata taactaaagt
     3421 tttattagtt acttttttat aaggatagga tatatttcaa gattggtaaa cagggtgata
     3481 attagataag aaattttaaa tagattcgat aatttaactt ttttaaaagc acaagatgct
     3541 ataaacaaaa aaccaaagaa gcctttacaa gctctttggt tcttctatca aagcttaaaa
     3601 gttaccattg atagaaatat acattcttct tccttcttct atgcggttat aggtatttac
     3661 ccaagtgcta ccactcccgc ttgcgtaaga ttcccagcca tttgtaaagc ttttgtcaaa
     3721 aagattataa atagctgcat tgatactcca ttgtttgttg atatcataac gcacacccat
     3781 ggaagctaaa aagatatctt tataatactc tctattgata ttagtatcac ccatatagcg
     3841 atctatttgc cattcacctt ttatccaagg ggtgaattta ttgtaaaagc tgtattcggt
     3901 ttttaacatg atattgtgtt ttaaactatc ctgttcaggt ttacctatca cacttttatc
     3961 ttgtgcttct ttaacctcac tatcaagata agtataagca aaatttacat ttaaattatc
     4021 aagagggctt atccctgctc caagctctat gcctttatat tcgaccttgc catggttgat
     4081 tgccttaaaa catctattag caccacaagc accaattcct ggaatcatat tgtctttatt
     4141 atatctttgg gttgaaattt tatctttaaa atttgttaaa aaacctgtcg cagaaacata
     4201 aaataaatca ttattataaa tagctgctat ttcataattt aaagatgtct cttcttttaa
     4261 atcaggattt ccatatatag gaaatctacc ttgaccacta taattataag ctccatttat
     4321 caaacgattt gcataaggag tcctaaaacc cgtagataca ccgcctttta aagtaagttc
     4381 attagtagga ttataaacca gataagctct tggcgaaaca ttgtttccaa aaatttcatg
     4441 atgattgtat cttgctccaa aagtaagtct taaatcatct tttatactat actcatcctc
     4501 tgcaaatatt gccaataaat actgatcaaa attggtcgga ttagctattt tatcttgcat
     4561 tttttcaagc ctatattcac cacctgcgct taaaatatga ttctgtccta aaggaatgac
     4621 agattttgta tctaagataa tatcttctgc gactatatct ctattttctc ccaaaaacgg
     4681 ctgtgtagct tgccctacga cttcacggcc atcattgctt accctattgt attgcaaagt
     4741 cgaagtaata gaaaagtttt cataaacacc ctcatggctt aaataagtca caaatttatc
     4801 aacttccata atatccgcat agccacccgt taagctacct tgtgtactac ctagacttgt
     4861 gatggttcct aattgacctt gtttattatc ataatgattt cttgaaaaat ctatatcaaa
     4921 tataaaagta ttataatcat tagctaaata actaattctt gttcctatgt taaaattatt
     4981 tgcctttgta ggactttgag cttgatctcc ttgaactctt tgtccacttc catttgtaaa
     5041 ttcaacatta gattgctgtc tgtaaaattc tctaaatcga agtgttagac ccaatttgtc
     5101 attcatcaaa ggaccactag aataaatact cgttccataa gtattacccc aatctttatt
     5161 ttcatttaaa agagcatcca aacttacaga agtttcccat ttatcactta cttttttggt
     5221 aatgatattt accaccccgc ctaaagcttc agagccatat aaagtactca taggaccttt
     5281 tataacttct atcctttcta tactagaaat cggaggtaag aaagaatttg aaatttcatt
     5341 aaaaccatta gggcctacct ctccgccaat accctgacga cgcccatcaa tcaaaaccaa
     5401 agtatatcca gtaatacccc tcatagtgat attataagaa cctgtttttc ccttgctagc
     5461 atataaatca acgcctggga tatctgcgat agcctctgca acatctctat aaggcttact
     5521 ttgtaattct tttttagtga taacattgat agtagcagga gcttctttaa tatcttgagt
     5581 aaagccagaa gcactaacga ttgagctatc tagttctaca ttttgcgata tggcattgga
     5641 gcttaagaga ccaatggcgc aaactgatag acatattttt ttcatttttc tccttttgtt
     5701 aaatattgat ttagaaatca aaatattatg ataataatta ttaatttaag ataaactttg
     5761 tatcaattgt gataattagt attaattaaa aatttatttt ttcttgctat aattcttaaa
     5821 aatattaagt ttttttagag aagtaaatag caaaaattaa atatctttta gatacaagct
     5881 tgattatttg attgttattt ttctctgtga aatttgtttc aaaatttatc tttttaaaca
     5941 atttaccata gaatgtgttt aagaaataaa gatatttaaa tcaaaaaata aaatcataac
     6001 ggagtaaaag atgaaaacat ttataagcaa tcataaaaac caatcttctt ttatcacttt
     6061 atttgttttt acacctttat tttttgtttt tctttattct aaagattttt tacacataca
     6121 acccaatgaa actattaaag aaaataaatt taatatggca atcaaacatt ttgtacagaa
     6181 ttcctccgat atgaaaccga cacaacccac acaaactata caagagcctt cgaatgtgca
     6241 acccaaagaa cctgtgcaag aaataaaaaa aataaaaccg agaaaggaaa aacctatcgc
     6301 taaacctaaa aaaataatcc ctccagcaaa tgcaaaggca ataagtcaac ccaaaaaaga
     6361 tacaaacatg cagcaacaaa ctccacaagc cagctcttac caaagcgtat ctttaactag
     6421 taatagtgag cttttaaaag aaataaaatc agcaatcgat gaagccctaa tctaccctag
     6481 acaagctaga aaaatgcgta tgagtgggga ggttcttgta gaatttacct ggacaaaaga
     6541 aaagaaatta gaaaatttaa aaatacttaa gccttcaaaa tatgattttc taaataaaag
     6601 tgctttagaa actatacgca tagcttctaa aaaatttcca caatatgaaa aaacttttca
     6661 tataaaaata ccattggtat ataaattaag ctaaatcttt cacaatatac tctattttta
     6721 atacaaatca ctccagcttt gctaacgctt agaagtagaa gcttcctagc taaagctaac
     6781 tagtattagc taattcgaaa ggctttgagt ttatagtcct caaggctaat tcctaaccca
     6841 aacgacttta atccacgctt taagatatta tttgcagcat taatatctct atgtaaagta
     6901 ttgccacatt tttcacaaag atacactcta tctttaaaca taagattttt tttgatattt
     6961 ccacatacac tacaagtttt gcttgtatat tgtggattga cttttataaa gaatttgcca
     7021 ttatgctttg ctttatactc tagatattga gagaattgat agaatgaagt attaagaata
     7081 gatttattta aaccactttt agcttttata ttctttaatt tagctctttt acacatattc
     7141 ttaatttgca aatcttcaac tgctagcaag tcaaattctt gtatgagttt tgaagttatc
     7201 ttgtgataac tatccttttt gatatttgaa cttttttcat agattttatt taattttaat
     7261 tgtgtttttt tgaaattatg gcttaacttt gttttctcct tttttgtttt taatattctc
     7321 ctgctttgtt ttctttgcaa tcttttaata ttcagctcta ctaagtagct ttgagttagt
     7381 agctattaac tctccactgc ttaaggtaat ctcattgata tttaaatcaa tgtcaactgc
     7441 ttttttaata tcaaaatctt tgctagatat taaagaaaca tttgattcat cataaatgat
     7501 actaaaagct aaatagtatt tattgtgatt tttgataata gtgatttgat taaacttata
     7561 agtatttggt aaatctctgt gataacgcat tttaaaaaat gtattcataa gtctaaatat
     7621 cttaaactta gtagtatcac tatctttgat tttgtaggct tgattattcc aattaaagct
     7681 ttgctttgca aatttagagt ttttaaattt gggaaagcct ttgtttttat ctctaattgc
     7741 ttgctctaag gcacgagaag attaatcctt gcttgtttgg gttacaacac ttttatagct
     7801 taattctctt gcttttataa ggctagtttt attgattatc tatcttactt gcctttaaat
     7861 aactcctatc ttttttatct aaattcttat ttttatccca ctgctcttgc tgtaaattta
     7921 aacaaatatt ataggcttga tatagatgaa acattgatga ttaataagct tttgttgttc
     7981 tttgtttagg tagaattcta tatttaaaac ctttggttat ttgcattgct ttgttccatt
     8041 agggcttttt ttctttttga ttatatattt tttcttaggg taattatctt ctatgccttg
     8101 attttctgca tattttttaa gagtttctag cattattcca cataggtatt ctataaaaat
     8161 tactgattat gtcaaatacc taactagagc cgtacaacta acactgtaag caattcatct
     8221 cccacttaag aagtgagagt tttattgaat aaaaaaagat aaatttaaag caagtaatct
     8281 ttttttagac aacactaaac ccttgcatgt atttacagca atatttattt catcataaac
     8341 aacctccaac ccataaaacc tcaataaaca ctataaaata aaagtattgg taaagaacaa
     8401 gcaaacaata aatctcaatc acccagacaa aaacaatctc aatcgaccca taaagcaata
     8461 aatcaagcaa gcataattaa tttaattgat taaactaata aatttaattt ataagattaa
     8521 caataaaaaa ccataaatta accaagctaa tcccacccaa acccaaacaa gtcataaatt
     8581 acagacactt ttttacaaac atcaattaaa tagcaagact atcgatgata aaaaatttat
     8641 ctcaagtata acattcattc tcgccaacaa gaatagacaa tcatagtcta tccaccctaa
     8701 cccaacatta acccctaacc caaccaagaa gtgtataaca accccaaccc ataaacctca
     8761 ataaacacta taaaataaac ttgagtgatt aaaaatccaa cccaattatt gaacaaaccc
     8821 aacctacata ataaaatata aactagacat ataaagaaca attgacacat aaaaatagat
     8881 tgaataaata aacctataca agtaaacata aagattaatt attgatacaa aagattcaat
     8941 aaataaaaag aataattgag atataaaaac atataaacta aacaactcaa acaaccatta
     9001 aattaaccca agccaatcaa caaccatagc taagctgaca acacaacaaa tcaatttaaa
     9061 tataaaacta caaattaaat caacccaagc taattaaacc tataaacata aaaaaataat
     9121 taaatataaa aacaacgatt gacatataaa aactaagatt ttaaatctat aagaataaga
     9181 taaag
//
LOCUS       DBBXPZ010000068         8688 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.070, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000068 DBBXPZ010000000
VERSION     DBBXPZ010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8688)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8688)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8688
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.070"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..439)
                     /locus_tag="ACJFD7_001352"
     CDS             complement(<1..439)
                     /locus_tag="ACJFD7_001352"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860153.1"
                     /translation="MAKINEFKDKDSLKPHQILSRLSLGVVAKLIISYKVQNKILDLR
                     AFDFRKYSSSNRNFFIYENTKQGFDNIDKVNIVLNLLHTLRNRACHFENLLKIRENDN
                     KLYPRISTKEKGTNIGLMPDKIENFLNDLICLINKDLLDYLNRG"
     gene            complement(427..639)
                     /locus_tag="ACJFD7_001353"
     CDS             complement(427..639)
                     /locus_tag="ACJFD7_001353"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860154.1"
                     /translation="MLGLEFIFSKQRLEHYKDINEHFENLKLISKIMPKIAILEIYLR
                     NALDYELNSNCKEWIKISDNPFYWLK"
     gene            complement(642..1526)
                     /locus_tag="ACJFD7_001354"
     CDS             complement(642..1526)
                     /locus_tag="ACJFD7_001354"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HGG0860155.1"
                     /translation="MIKNLFEIFIKTNYNIKDLNEQHKGHIRNLISIFNNHILEPLGN
                     IHLDELTLYKVQEFYNGMKNKGLEPKTYNRAIKEVLSPMIRYAVKNKWINENVTLGLK
                     LDRVQNKKLVTNPKGKYEAILNAILELYKDNLLYKALFLLIHSGRRRDEVLSLLWQNV
                     DLERKTIFLPKTKNGEAQEHALDDECYNALKALKDEVKQDKGLVFVSSVSGKKISNLA
                     RQEAKIRELSGVKEWTPHFSRHIKASFLMQNGVNPAVISGVLGHRDLSTINIYATNDT
                     LKASQRANEALKKLQEKD"
     gene            complement(1610..1780)
                     /locus_tag="ACJFD7_001355"
     CDS             complement(1610..1780)
                     /locus_tag="ACJFD7_001355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860156.1"
                     /translation="MAIDRKDYNIPIGKGTHLKRHKDKINSFLFRMQNGGKEKQHAFT
                     ILYALRGMKTNI"
     gene            complement(2078..2162)
                     /locus_tag="ACJFD7_001356"
     tRNA            complement(2078..2162)
                     /locus_tag="ACJFD7_001356"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2126..2128),aa:Leu,seq:tag)
     gene            complement(2167..2243)
                     /locus_tag="ACJFD7_001357"
     tRNA            complement(2167..2243)
                     /locus_tag="ACJFD7_001357"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2207..2209),aa:Arg,seq:tct)
     gene            complement(2258..2334)
                     /locus_tag="ACJFD7_001358"
     tRNA            complement(2258..2334)
                     /locus_tag="ACJFD7_001358"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2298..2300),aa:Arg,seq:tcg)
     gene            complement(2338..2414)
                     /locus_tag="ACJFD7_001359"
     tRNA            complement(2338..2414)
                     /locus_tag="ACJFD7_001359"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2378..2380),aa:His,seq:gtg)
     gene            complement(2439..2516)
                     /locus_tag="ACJFD7_001360"
     tRNA            complement(2439..2516)
                     /locus_tag="ACJFD7_001360"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2479..2481),aa:Pro,seq:tgg)
     gene            complement(2559..3407)
                     /locus_tag="ACJFD7_001361"
     CDS             complement(2559..3407)
                     /locus_tag="ACJFD7_001361"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HGG0860157.1"
                     /translation="MRFVFLICCACLVFANEILLLSKFDKQDFNSKDFNAYLMSEKLD
                     GVRGIWDGKYLKTRQNYKIKTPDFFTKNFPPFAIDGELWIARNKFDEISALIRSGDSN
                     LTLWKEVTYNIFDVPNACEEFQISTCTLKNRLAVLEEYLQKYPSAYIKIIPQIPVENQ
                     NNLNQFYESIIKNQGEGIVIRKNLSPCEKGRSKNVMKLKPHDDAECELVGFRKGKGKF
                     ENQVGALLCKMPNGQIIKIGSGLKDEDRKNPPKIGSIVTYKFNGLTKNSLPRFPVFLR
                     IRDENP"
     gene            complement(3407..4069)
                     /gene="cgpA"
                     /locus_tag="ACJFD7_001362"
     CDS             complement(3407..4069)
                     /gene="cgpA"
                     /locus_tag="ACJFD7_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotein CgpA"
                     /protein_id="HGG0860158.1"
                     /translation="MKTRILAIFFIFTSLLYADENPFKTDHNITLVAPPEFQKEEVKF
                     NSSARILKSITFNYINLDGSEDKIDLDVNKSIDWHDTYTISRFKSPDPSKVLDVSVTI
                     PEKNSSKQESNSTANVEIPLQVAKIYDFISYAVYKNKIKLNTSDEMITDFSVGNPSKI
                     VIDFRSKMINPTKNIRLSNSIFKRIDFGSHKGYYRLVIYLDGTYNYNIQKDATGYMIN
                     LL"
     gene            complement(4059..4262)
                     /locus_tag="ACJFD7_001363"
     CDS             complement(4059..4262)
                     /locus_tag="ACJFD7_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860159.1"
                     /translation="MIFWAFLVVIGAIYFGNMFFGQYSLDTLLSLENTKEELNKKIIL
                     LKEQNAKAQKDYFELKGLYPNEN"
     gene            complement(4328..5572)
                     /gene="eno"
                     /locus_tag="ACJFD7_001364"
     CDS             complement(4328..5572)
                     /gene="eno"
                     /locus_tag="ACJFD7_001364"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000015 - phosphopyruvate hydratase
                     complex [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004634 - phosphopyruvate hydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HGG0860160.1"
                     /translation="MLVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTG
                     SKEALELRDNDERFGGKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNY
                     SNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIINGGAHANNNVD
                     FQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPI
                     DLLMTCIKKAGYENRVKIALDVASTEFFKDGKYHMEGKAFSSEDLIERYVELCAKYPI
                     CSIEDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN
                     QIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAAALNTGQIKTGALARGER
                     TAKYNRLLEIELESDEYLGEKL"
     gene            complement(5572..6603)
                     /gene="recA"
                     /locus_tag="ACJFD7_001365"
     CDS             complement(5572..6603)
                     /gene="recA"
                     /locus_tag="ACJFD7_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HGG0860161.1"
                     /translation="MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSV
                     GLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKY
                     AKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
                     QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFY
                     ASVRLDVRKVATLKQNEEPIGNRVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELID
                     YGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMIS
                     GSEDDEGEE"
     gene            6709..7569
                     /locus_tag="ACJFD7_001366"
     CDS             6709..7569
                     /locus_tag="ACJFD7_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis family protein"
                     /protein_id="HGG0860162.1"
                     /translation="MKKITIAHSPDADDIFMYMAIKFGWIGNDFAYENTALDIQTLNE
                     FALKNEFDATAISFGLYPLIASEYALLRTAVSFGEGYGPKLIKKKDTHLKRNFKVALS
                     GANTTNALIFRMKYPEARIIYKNFLDIENAVLSGEVDAGVLIHESILDFDQSLYVEAE
                     LWDIWLEFAKENLPLPLGGMALRRSLPLSDAIKIERDLTNAVKIADANRKILAPMLME
                     RKLIRVDEEKLDTYLNLYANKNSISMNQTQLLAVDTLFKLGYDYKFYDKIIHVNDFLI
                     PSEYEEARNS"
     gene            7581..7850
                     /gene="fliQ"
                     /locus_tag="ACJFD7_001367"
     CDS             7581..7850
                     /gene="fliQ"
                     /locus_tag="ACJFD7_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HGG0860163.1"
                     /translation="MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLVISIFQATTQI
                     NEMTLSFVPKIILVVVILIFLMPWMTTTMIDFTENILNQIPTFIK"
     gene            7847..8623
                     /locus_tag="ACJFD7_001368"
     CDS             7847..8623
                     /locus_tag="ACJFD7_001368"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008762 - UDP-N-acetylmuramate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HGG0860164.1"
                     /translation="MIIDFKKYSSVRIGNEFEVLVLDQICDFDGFLIGGANNLLVSPK
                     PKNIGILGDSFDFIQILDQNKDFIHLRIGCKTKSSKIYRFAKENNLKGFEYLSKIPGT
                     LGGLLKMNAGLKGECISQNLIKIATSQGEILRANINFDYRFCPLNMPFFWAEFKLNFG
                     FDTLKDEALKNARSNQPSGASFGSIFKNPKNDFAGRLIEAVGLKGFSKGDAMLSDKHA
                     NFLINKKNASFEDAFFLIELARKKVFEEFGTNLENEVIII"
BASE COUNT         2737 a         1546 c         1275 g         3130 t
ORIGIN      
        1 aacccctatt aagataatct aacaaatctt tatttattaa acaaatcaaa tcatttaaaa
       61 agttttctat cttatcaggc attaaaccta tattagtccc tttttctttt gtgcttatgc
      121 gtggatataa tttattatca ttttctctaa tttttaaaag attttcaaaa tgacaggctc
      181 tattccttaa agtatgtagc aagtttaaaa ctatattaac tttatctata ttatcaaagc
      241 cttgttttgt attttcgtaa ataaaaaagt ttctattact actgctatac ttcctaaaat
      301 caaaagccct taaatctaaa atcttatttt gcaccttgta agatatgatt aatttagcca
      361 ctacacctaa gctaaggcgt gataagattt gatgaggttt taaactatct ttatctttaa
      421 actcatttat tttagccaat aaaaaggatt atcgctaatt tttatccatt ctttgcaatt
      481 actatttaat tcataatcta gggcatttct tagataaatt tcaagtattg ctattttagg
      541 cattatctta gatattaatt tcaagttctc aaaatgttcg tttatatctt tataatgctc
      601 taatctttgc tttgaaaaga taaattctaa acctaacatt tttaatcttt ttcttgtagc
      661 ttttttaaag cttcattagc tctttgactt gctttaagtg tatcattagt cgcataaata
      721 tttatagtac ttaaatccct atgccctaaa actccactaa taactgcggg attaactcca
      781 ttttgcatta aaaaactagc ctttatgtgc cttgaaaaat ggggcgtcca ttcttttact
      841 ccgctaagtt ctcttatttt ggcttcttgt cttgccaaat ttgatatttt tttaccgcta
      901 acactagaaa caaaaactaa tcctttgtct tgtttaacct catcttttaa agcctttagt
      961 gcattatagc attcatcatc taaggcgtgt tcttgtgctt caccattttt tgtctttggc
     1021 aaaaatatag tttttctttc taaatctaca ttttgccaaa gcaaacttaa aacctcatcc
     1081 ctacgcctac cactatgtat aagcaagaat aaagctttat aaagtaaatt atctttgtat
     1141 agctctaaaa tagcatttaa aatagcttca tatttacctt taggattagt aacaagcttt
     1201 ttattttgca ctctatcaag ctttaaacct aatgtaacat tttcattaat ccatttattt
     1261 tttactgcat atctaatcat agggcttagc acttctttaa tggctcgatt atatgttttt
     1321 ggctctagtc ctttgttttt cattccatta taaaattctt gtaccttgta aagcgtaagc
     1381 tcatctaagt gtatatttcc taatggctct aagatatgat tattaaaaat gcttattaga
     1441 tttcttatgt gtcctttgtg ttgttcgttt aaatctttta tgttgtaatt ggtttttata
     1501 aatatctcaa aaagattttt tatcaaaatg ctagaattta aagcatatcc aacgctaaaa
     1561 agctttttaa actcgttttc atattcttta gctcttgcaa gtgctattct tatatattcg
     1621 ttttcattcc acgcagggcg taaagaatag taaaagcgtg ttgcttttct ttacccccat
     1681 tttgcattct aaataaaaag gagttaattt tatctttgtg tctttttaaa tgtgttcctt
     1741 ttcctatggg tatattataa tccttcctat caatcgccat ttttaacctt attatttttg
     1801 ctatattata gcgtatttca aagccttata aacttaataa aattatctta ggttaccttt
     1861 actttagggt taggacttat ttttaccttt tttaccgcta aacttaaatg gatgaaaagg
     1921 actattttat agctatcctt tcatccggtt actattaaaa gttacctgct aaaaggttgc
     1981 ctttttgaaa taattcgaaa tgatacaatg ggacttcaaa ggcttcagcg taatttaagc
     2041 aaaatctcta aaagtatggt aaaatggggg tttagagtgg tgcggacgaa aggacttgaa
     2101 ccttcacgca ttgctgcacc agatcctaag tctggcgtgt ctgccaattt caccacatcc
     2161 gcaaagtggt acgcccaaga ggattcgaac ctctgaccta cggcttagaa ggccgttgct
     2221 ctatccagct gagctatgaa cgcatataaa atcttggtgg tgcgcccgat aggaatcgaa
     2281 cccataacct acagatccga agtctgtcgc tctatccagt tgagctacga gcgctagtgg
     2341 ggtgagtgat gggaattgaa cccacgaccc tcaggaccac aatctgatgc tctaaccgac
     2401 tgagctacac tcaccatttt gtataaattt ataaaaaatg gtcggggtga aaggattcga
     2461 accttcggcc ccttggtccc aaaccaagtg cgctaaccag actgcgctac accccgaata
     2521 aataaaagga aatattttat cacaaaataa ttttaaagtc aaggattttc atctcttatt
     2581 cttaaaaaaa ccggaaagcg aggtaaggaa tttttggtca atccattaaa tttataagtc
     2641 acaatgctac caatttttgg aggatttttt ctatcttcat cttttaaacc actgcctatt
     2701 ttaatgattt gtccattagg cattttacaa agtaaggcac ctacttgatt ttcaaattta
     2761 cccttaccct tgcgaaatcc tactaactca cactctgcat catcatgggg ttttaatttc
     2821 ataacatttt tacttctgcc tttttcacaa ggacttaaat ttttgcgtat gacaatacct
     2881 tcaccttgat tttttataat gctttcgtaa aattgattta aattattttg attttcaact
     2941 ggaatttgag gaataatttt tatataggca ctaggatatt tttgcaaata ctcttctaaa
     3001 acagccaaac gatttttaag ggtgcaagta gaaatttgaa attcttcgca agcatttggc
     3061 acatcaaaaa tattataagt tacttccttc cataaggtca aattactatc gccactacga
     3121 attaaagctg aaatttcatc aaatttattt cttgctatcc aaagctcacc atcaatagca
     3181 aaaggaggga aattttttgt aaaaaagtca ggagttttta ttttgtaatt ttggcgagtt
     3241 tttagatatt tcccatccca aattccacgc actccatcaa gtttttcgct catcaaataa
     3301 gcattaaaat ctttagagtt aaaatcttgc ttatcgaatt tgctaagaag taaaatttca
     3361 ttagcaaaaa ctaaacaagc acaacatatt aaaaaaacaa acctcatcaa agcagattaa
     3421 tcatatatcc agttgcatct ttttgaatat tataattata agttccatca agatatatta
     3481 caagtcgata atatccttta tgagatccaa agtctatgcg tttaaaaata gaattgctaa
     3541 ggcgtatgtt ttttgtaggg ttaatcattt tagatctaaa atctataacg attttacttg
     3601 gatttcctac tgaaaaatct gtaatcattt catcactagt gttaagtttt attttatttt
     3661 tataaaccgc ataagaaata aaatcataaa tctttgcaac ctgtaaaggt atttcaacat
     3721 tggctgttga gtttgattct tgtttggagc tatttttttc aggtatagta actgaaacat
     3781 cgagtacttt tgaaggatca ggacttttaa atcttgatat agtataagta tcgtgccaat
     3841 caatactttt attgacatct aaatcgatct tatcttcact tccgtctaaa ttgatataat
     3901 taaaagtgat gctttttaaa attcttgcac tagaattaaa tttaacttcc tctttttgaa
     3961 attcaggtgg agcaaccaag gttatattgt gatctgtctt aaaaggattt tcatcagcat
     4021 ataaaagaga ggtaaaaata aaaaatattg ccaaaattct agttttcatt tgggtataat
     4081 ccttttaatt caaaataatc tttttgtgct ttagcatttt gttctttgag caaaataatc
     4141 tttttattaa gctcttcttt ggtattttct aagcttaata aagtatctaa agaatactgc
     4201 ccaaaaaaca tattgccaaa ataaatcgct ccaattacaa caagaaaagc ccaaaaaatc
     4261 atttttataa catgggtata aaaacttttt tttcttgtgc tttcgtcgta ttctttaagt
     4321 aaatcgctca gagcttttct cctaagtatt catcgctttc aagttcaatt tcaagcaagc
     4381 gattgtattt tgcggttctt tcacctcttg ctagggctcc tgttttgatt tgtcctgtat
     4441 ttaaagccgc agcaaaatcc gctataaaag catcttcact ttcgccgctt ctatgactca
     4501 tcacacattt atagttattt ctttgcgcta aacgcacagt tctcatagtt tgggtaatag
     4561 ttccgatttg atttggttta ataagcacag catttgccat ttttttgatg atgccttctc
     4621 ttaaaatatc ttcattagtt acaaacaaat catcgcctac aagctgaatt ttattgccca
     4681 atttttcagt aagcttaatc caaccttcaa agtcattttc agctaagcca tcttcgatac
     4741 tgcaaattgg atattttgca caaagttcta catagcgttc gatcaaatcc tcgcttgaaa
     4801 aagccttgcc ttccatgtga tatttgccat ctttgaaaaa ttctgtactt gccacatcaa
     4861 gagcgatttt tacacgattt tcataacctg cttttttgat acaagtcatt aaaagatcga
     4921 taggttctgt gttgttagct aaatttggag caaaaccgcc ttcatcacct aaagccgtag
     4981 aatgtccaga atttgcgagt tcttttttta atatcgcata aatttcacaa actgaacgca
     5041 aagcttcttt aaagctagta aaaccaaaag gcatgatcat aaattcttga aaatctacat
     5101 tgttgtttgc atgagcaccg ccatttatga tattacacat tggcacgggt aaaatgctcg
     5161 catttgcacc acctaagtag cgatataaag gcattcccaa agcagctgca gccgcacgag
     5221 ctgttgccat agatacgcct aaagtcgcat ttgcacctaa atttgagtaa ttatttgttc
     5281 catcaagctc acgcaaagta tcatcaagtt gagtttgatt aaaagcatct agtcctaaaa
     5341 tttcatctgc aatggtctca ttgacatttg caacagcttt taaaacgcct tttccgccaa
     5401 atctttcatc attatcacgc aattctaagg cttcttttga acctgtactt gcaccacttg
     5461 gaactatggc cgcacctaca cttccatcgc ttagcgtaac ttcggctttt acggttggat
     5521 ttcctctact atcaagaact tcataggctc taacatcttc aattactaac attattcttc
     5581 tccttcgtca tcttcgctac cgctgatcat accttctatt cccatagaat tttgaattgc
     5641 ttttgtgatt tcatctgcaa tttcagggtt ttcttttaag aaagcttttg aattttctct
     5701 accttgtcca agttttttat ctttataaga aaaccacgca ccacttttat ctacgatatc
     5761 aagttttaca ccataatcga tcaattcacc ttcacggctt aaaccctctc caaacatcac
     5821 atcaaattca gcttgtctga atggaggagc aactttattt ttaactactt ttactttaac
     5881 gcggtttcct ataggttctt cgttttgttt taaggttgct acttttctaa catctaaacg
     5941 cacagaagca taaaatttta atgcatttcc acctgttgtg gtttcaggag taccataacc
     6001 catagcaccg attttcatac gaatttggtt gataaaaatt actgtggtat tcattttatg
     6061 aactatacct gtaagttttc ttagagcttg agacataagt cttgcttgaa gtcctacatg
     6121 ttgatcgccc atatcgcctt caatttctgc ttttggggta agcgctgcaa cgctatctac
     6181 tacgataaga tctactgcgc cacttcttgc tatagtttct acaatttcta aggcttgttc
     6241 tccaaaatca ggctgagaaa catacaaatc atctgtattt acacccaaat ttttagcata
     6301 ttttacatca agcgcatgtt ctgcatcgat aaaagcacaa actccacctg ctttttggca
     6361 ttctgcgata atatgtaaag ttagagtggt tttacctgaa ctttcaggtc cataaatttc
     6421 tataattctt ccttttggaa caccgcctat acctaaagca agatcaagcc caactgaacc
     6481 tgtgcctatg ctatcgattt gctcgacttc tttatcccct agtcttaaaa tagtgccttt
     6541 tccaaaggtt ttatctaaac tttttagggc agcgtctaga gattttcttt tattatcatc
     6601 cataactttc cttaaaaatt ctaaattttt agttagaatt ctaacaaaat aaaattaaat
     6661 aatgatttat tttgctagaa ttaaagcaaa gatttaaagg aagcatagat gaaaaaaatt
     6721 actattgcac attctcctga tgctgatgat atttttatgt atatggcaat taaatttggg
     6781 tggataggga atgattttgc ttatgaaaat acagctttag atatacaaac tttaaatgaa
     6841 tttgccttga aaaatgaatt tgatgctacg gctatttctt ttgggcttta tcctttaatc
     6901 gcttctgagt atgcactttt acgcacagca gtgagttttg gtgaaggtta tgggccaaaa
     6961 ctcatcaaga aaaaagacac gcatttaaaa agaaatttta aagtcgcttt gagtggagca
     7021 aataccacca atgctttgat ttttcgcatg aaatatcctg aagcaagaat tatttataag
     7081 aattttttag acattgaaaa tgcggtttta agtggcgaag tagatgcggg ggttttgatc
     7141 catgaaagca ttttagattt tgatcaaagt ctttacgtgg aagcagaact ttgggatata
     7201 tggcttgaat ttgctaaaga aaatttgcct ttgcctttag gtggaatggc tttgcgtcgt
     7261 tctttacctt taagcgacgc gattaagatc gaaagagatt taaccaatgc tgtaaaaatt
     7321 gccgatgcaa atcgtaaaat tttagcccct atgcttatgg aaagaaaact tatccgtgtt
     7381 gatgaagaaa aacttgatac ttatcttaat ttatatgcca ataaaaactc tattagcatg
     7441 aatcaaactc aacttttagc tgtagatacg ctttttaaac taggatatga ttataaattt
     7501 tatgataaaa tcatacatgt aaatgatttt cttatcccta gcgaatacga agaagctaga
     7561 aattcttaaa aaggataaaa atggatgaaa gtaccttagt tgctcttgga gtgcaaacct
     7621 ttaaaatcac acttttactt tccttgccta tgcttttagc aggacttatt gcagggcttg
     7681 tgatcagtat ttttcaagca actacacaga ttaacgaaat gacactttct tttgttccta
     7741 aaatcatctt ggttgtagtt attttaatct ttttaatgcc ttggatgact acaactatga
     7801 ttgattttac tgagaatata ctaaatcaaa ttccaacttt tatcaaatga tcattgattt
     7861 taaaaaatac tcttctgtgc gtataggaaa tgaatttgaa gttttagttt tggatcaaat
     7921 ttgtgatttt gatggttttt taataggcgg tgcaaataac cttttagtta gcccaaaacc
     7981 taaaaatata ggaattttag gagatagttt tgattttata caaattttag atcaaaataa
     8041 agattttata catcttcgca taggctgcaa aacaaaatca agcaaaatat atcgctttgc
     8101 taaagaaaat aatcttaagg gttttgagta tttaagcaaa attcctggca cacttggtgg
     8161 gcttttgaaa atgaatgcag ggcttaaagg agagtgtatc agtcaaaatt taatcaaaat
     8221 tgctacttct caaggcgaaa ttctaagagc aaatataaat tttgattatc gtttttgtcc
     8281 tttaaatatg cctttttttt gggctgaatt taaactaaat tttggctttg atacccttaa
     8341 agatgaagct ttaaaaaatg caagaagcaa ccaacctagt ggagcaagct ttggctctat
     8401 ctttaaaaat ccaaaaaacg actttgcagg acgtttaatc gaagctgtag gacttaaagg
     8461 atttagcaag ggagatgcta tgttaagcga taaacacgca aattttttaa ttaataaaaa
     8521 aaatgcaagt tttgaagatg cgttttttct tatcgaattg gctagaaaaa aagtctttga
     8581 agaatttggc acaaacttag aaaatgaagt gattataatc taaacacaca aaacaataaa
     8641 agtctaaaaa atttactctt aatctaactt taaataaaat acaaattc
//
LOCUS       DBBXPZ010000069         8503 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.071, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000069 DBBXPZ010000000
VERSION     DBBXPZ010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8503)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8503)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8503
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.071"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            284..4198
                     /locus_tag="ACJFD7_001369"
     CDS             284..4198
                     /locus_tag="ACJFD7_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860165.1"
                     /translation="MFISSKTELIQTIKNLTINNKEVKQIDFIYPNFSILHAILKNID
                     FHQRKMLSKNQILTMEILEILKQTCDNHNNIEINIHTLNELDAGQNVNLKDLSSSEIC
                     TKVYLEDLEEEIQDKKQGKDLNLFYHTDKNNLCIEFINTLKELAKDSEDITTLDELIE
                     NIDPDNISSEKFDDFKKKVLEKIGNVIESDFFKNSISPTLKNTYEKFINELLEHIKKL
                     AEEKEYEKIKIILSAIAGVAIATVVAVLTGGAGLAILAAGLFSLMGSASEYYEFAQRD
                     YGTLLTPLAAFLATRCAMFIHYINSRLLSCVLIIDKKEIIDLSGFGLYLGSDESNIAS
                     NLAYKITLSEEIKSIENIFSEIFLNSEQKDKGYKNTPNDSKSSNLPAFISTQKLSNLY
                     LKNNAILKNLQEDIKQFIYFSYIESPNFNSSKLAEFFAQKNQNAQIDLNTTKMSKNYL
                     IISNIPNKYNAGLSESLTQEIANYNIQDKYRRIKKNIDTSKKTYDSTRDYSEYSIEMP
                     QDENEPYILQLSPFVKISKEAYENSKKAYEDMQKVYKYLTNFVATPQKLPEFAKTAKE
                     KLAISENEPMIEIVKKTENLRHCERINILAYIDYNKKINDKKWLPYFYIKKFFKQNEA
                     KESIIEKEKKIAHQYLTFLKKEFFEKSDKSSFGNYSLMECLFISFVLYQAKLIFPNIN
                     LDLKKYGGSNFVYIKYLDKTYVLWTDECPIYVNNEPTNITAYEVVSQLLKILDKKDYS
                     FVENDNSITIDDFFNELSKDLDTTNTLDKKIIKLKQMYHLDEQKCIKEFMNLDEETQR
                     AFVAWMDIEKQISDLSKLLEQMYGKEYLNKAKEQKTSEIFTYAMLKILLSASPFISFT
                     AQMLWDFNFLKTIEYVIRACIKINKEGFKEFFKEQLGIFAPPKKNSIYHIHIKSNLII
                     KAHLQQIEKELIHTKIQMILTQEIKSNLIIQKNTSGLNLFITKIKEYFNEKQIKIYWS
                     DKYMKQLFIYSNQESNISKIALMHSIDIQTQKYTIYTYAKLNKLDLASIVAGEFVGIF
                     LNYLFPTNFKALQEQYESIVYQLYTFKDDSPLAVIRDHFITYPFAINSKFISFDLKKI
                     FYGIDLCTGVFDTHFSFHYEIDQKLEENKEFLLKRLLSYLIIDEKRSALRITKDENET
                     IQERDDYTFFNQSLNSIELIKSEIYILKNTALEKYYKEVNDEINLTAIQAYNEALQIL
                     QDFANGLYNTSKDKTGRYIEDKNKTRRLLEKLNIIGQNNLKAMYMGINGNEESLKAIG
                     KRENNTSKASANADITSETKTPPNFIGRLATTIIIEDGLYMG"
     gene            4217..5503
                     /locus_tag="ACJFD7_001370"
     CDS             4217..5503
                     /locus_tag="ACJFD7_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860166.1"
                     /translation="MSETYEIYTPNGLTLDVEKDTNKILFKENVKPTGNYTEEYSKAV
                     FKSYHIMKNSPYKDYKPQYLDPNFYTGQKSTLVEFKDWQSIYLKDPIKGAIAPWTKAE
                     KAYYKSLKTKKERYKYLVIRSGLRSVVIDIPYDAYANVDEKGYLINEEYAYIYDEVNN
                     NKETLKSSLFRQEWGIAAGILGKPEYFVRSKNHGFNARMIQCFILYIQLTGGGYEELG
                     IKRGIYNYADNLLEIGIGMAGIHKNPLRAKLVKDLAKTIQPDEFGMLPFIDEIMGVDW
                     VIDLNKYDFVYDEEGRIIWALYNDIEKSKLKDPRDIDSTPESRNKFDDAMDGYENGMV
                     TRFDVDIRNERDERSAKLTMDTLVLSAKLAALTPPQGYPNAPYYFTPERLEWIYKRGY
                     LDKLLDPRIPAIYRYNFPQELRAKIRAYAKEHNIKE"
     gene            complement(5507..6406)
                     /locus_tag="ACJFD7_001371"
     CDS             complement(5507..6406)
                     /locus_tag="ACJFD7_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HGG0860167.1"
                     /translation="MIEKEEIGIAIENYDECISGSKTFVFNTKGGAIGSGDDCTFRIQ
                     DKLEQIKNTHAIVSYEEGSFTIAAFEDSDIYYNKSFSRMPSGYEIIISIGDIFKIGNL
                     EFRFVDAKSIEASIKENKKYLEDIEKRNHFDEIEIKPRGKTSINFDKNKELKEILENN
                     DYKFIEEEKADDSFLKEIIQKNPNSLEYENVLKSLVKNLKDIKTKQQNSKLNNDYSSI
                     SIKDFESIINNIPLIKSTRLINILALSLIAKELYTPIFEEMEENMFIKYIEAAIQNNI
                     KEDKILFENLTIKALEKYIKDFE"
     gene            complement(6403..>8503)
                     /locus_tag="ACJFD7_001372"
     CDS             complement(6403..>8503)
                     /locus_tag="ACJFD7_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ImcF-related family protein"
                     /protein_id="HGG0860168.1"
                     /translation="NNKEFEKSQNTLRSLQLLLKDQDYQNLNIKQKADFLIELRNILN
                     TYPELWQDNNIFQYLNLNLSYKGFKEAKQLYYKLNEDVLKNTLLKEMEYTLLTDTNKE
                     NLIKTLYMYRSLFEQKYFNKEILKIWINENWNTLSKYSISKDDFLEGVDELKQFNLKS
                     FTEDENSIHTGKRKLESISRTQRIYILLNFLNSDKPKEKYLIKEDLGFAANSVFSNNS
                     QITSIDKIYTKVGMMDFLNDLNQQVDTAINIESWMLDNNFKENKNTLTMGILKLYLSE
                     YQNAWQNLLASLQPVRYNTKEAMLNELNILSKKENPLYSLLKIVSSNTNLNDAVLLTQ
                     AYNLGLNAGEIRSNFIGVSNAFTQYHKLVNKNTLLSVGNIEVGKGTDDEKILDILNTN
                     ITNMSNKIIDFSSNNNQSAEEKISYALGGNKDANDPFAVFQMNIKKLPNDLERYYSQL
                     SNYSWNFIENHGISLFNTAWINEVYNPFVNDIAPYYPFNDESVADLSMDSFKTFFGRN
                     GTLNSFYKKYLNNVLVKRKNNYSINSQFASKLNFSKEFLDFITNAGNLSSLILNGNDN
                     IKVNFTIQSLDLSADFSFIKLGYDNKNIQYDHTLNQTLQIVAEKFNNGTSLNFTAYNY
                     SNPNLNYTKSYKGEWAWYKFIKDNKSNSIYSIIFNNNKNLYFDFEIINGASELNNIVY
                     ILNNLKIVENITGVNKQ"
BASE COUNT         3304 a         1087 c         1146 g         2966 t
ORIGIN      
        1 aattatgtga aaaatagacg caacaaaggc agcaagcaac aacaaatacc tagaatatgt
       61 aaaaagttaa aaagatacaa taagaattac aagaagtttt taaagttata aaaatcctaa
      121 ttaatgaaat cttagctcct aaattttaca acaaatacaa agatttagaa gtagagattg
      181 atgataaggg caatgtgctt agatggatag gagagattaa tagagacaaa aaatattagc
      241 aaataaaaaa tgatataata atgctttata taaggaatct tttatgttta taagttctaa
      301 aacagagtta attcaaacta ttaaaaattt aacaatcaac aataaagaag ttaaacagat
      361 tgattttatt tatcctaatt tttctatttt acacgctata ttaaaaaata ttgattttca
      421 tcaaagaaaa atgctatcta aaaatcaaat attgactatg gaaatactag aaattttaaa
      481 acaaacttgt gataatcaca ataatataga aataaatatc cataccctta atgagcttga
      541 tgctggacaa aatgtaaatt taaaagattt atcaagcagt gaaatttgca ctaaagttta
      601 tttagaagac ttagaagaag aaattcaaga caagaaacaa ggtaaagatt tgaatctttt
      661 ttatcataca gataaaaata atctttgtat cgaatttatc aatactttaa aagaactagc
      721 taaagattct gaagatataa caaccttaga cgagttaatc gaaaacattg atcctgataa
      781 tataagcagt gagaaatttg atgattttaa gaaaaaagtt ttagaaaaga ttggaaatgt
      841 catagaatcg gattttttca aaaatagcat aagtcccact ttaaaaaata cttatgaaaa
      901 atttatcaat gagttgttag aacacattaa aaaacttgcc gaagaaaaag aatatgaaaa
      961 aattaaaatc atactaagtg ctatagcggg tgttgcaata gccacagtgg tagctgttct
     1021 tacaggtggg gcaggattag ctattttggc tgctggttta ttttctttaa tgggttctgc
     1081 aagcgagtat tatgaatttg ctcaaagaga ttatggcaca cttttaacgc ctttagccgc
     1141 atttttagcc actagatgtg ctatgtttat tcattatatt aattctcgct tgttatcttg
     1201 tgttttaatt attgataaaa aagaaattat tgatttaagt ggttttggat tatatcttgg
     1261 aagtgatgaa agcaatatcg cttcgaattt ggcttataaa atcactttaa gcgaagaaat
     1321 aaaaagcatt gaaaatattt ttagtgaaat ctttttaaac tcagaacaaa aagacaaggg
     1381 gtataaaaat acacccaatg attcaaaatc gagcaattta cccgctttca tttcaacgca
     1441 aaaattatct aatttgtatt taaaaaacaa tgctatttta aagaatttgc aagaagatat
     1501 taaacaattt atttattttt cctatataga aagtccaaat tttaactcaa gtaaactagc
     1561 tgaatttttc gcacaaaaaa atcaaaatgc acaaatagat ttaaatacaa ctaaaatgag
     1621 taaaaattat ttgattattt caaatatccc caataaatac aatgcaggac ttagtgaaag
     1681 tttaactcaa gaaatcgcca attataatat acaagataaa tacagaagaa ttaaaaaaaa
     1741 tattgatact tcaaaaaaaa cttatgacag cacaagagat tatagcgaat atagcataga
     1801 aatgccacaa gatgaaaatg aaccttatat tttacaatta agcccttttg tgaaaatatc
     1861 caaagaagct tatgagaata gtaaaaaagc ttatgaagat atgcaaaagg tttataaata
     1921 tttaacaaat tttgttgcta caccgcagaa gctaccagaa ttcgcaaaaa cagctaaaga
     1981 aaaattagca atatcagaaa atgagccaat gatagaaata gtaaaaaaga cggaaaattt
     2041 acgacattgc gaacgaataa acattttagc ttatattgac tacaataaaa aaataaatga
     2101 taaaaaatgg cttccttatt tttatatcaa aaaattcttt aaacaaaacg aagccaaaga
     2161 atccatcata gaaaaagaaa aaaagatagc tcatcaatat ttaacttttt tgaaaaaaga
     2221 gttttttgaa aaatcggata aatcttcatt tgggaactat tctttaatgg aatgtttatt
     2281 catttcattt gtcttgtatc aagctaagct tatttttcca aatatcaatt tggatttgaa
     2341 aaaatatgga ggcagtaatt ttgtatatat aaaatactta gataaaactt atgttttatg
     2401 gacagatgaa tgtccaatat atgtaaataa tgagccaaca aatattacag catatgaagt
     2461 tgtatcgcaa ttattaaaaa tacttgacaa aaaagattat tcttttgtgg aaaatgataa
     2521 ttcgataact atagatgatt tttttaatga attatcaaaa gatttagata caacaaatac
     2581 attagataaa aaaataatca aattaaagca aatgtatcat ttagatgaac aaaaatgcat
     2641 taaagaattt atgaatttag acgaagaaac gcaacgagct tttgttgcat ggatggatat
     2701 agagaaacaa atatcagatt tatcaaagct tttggaacag atgtatggaa aagaatattt
     2761 aaataaggca aaagaacaaa aaacaagtga aatatttact tatgcaatgt taaaaatttt
     2821 attaagcgct agtcctttta tcagctttac agctcaaatg ttgtgggatt ttaatttttt
     2881 aaaaacaata gaatatgtta ttcgagcttg tattaaaata aacaaagaag gatttaaaga
     2941 attttttaaa gaacagcttg gtatttttgc acctccaaaa aagaatagta tatatcatat
     3001 acacataaaa tctaatttaa taataaaagc acacttgcaa caaatagaaa aagaattaat
     3061 tcatactaaa atccaaatga ttttaacaca agagataaaa tccaatttaa taatacaaaa
     3121 aaatacatcc ggtttaaatc tatttatcac aaagataaaa gaatacttta atgaaaaaca
     3181 aattaagatt tattggagtg ataaatatat gaaacaatta tttatatact ctaatcaaga
     3241 aagcaatata tctaaaattg ctcttatgca tagcatagat atacaaactc aaaaatatac
     3301 tatttatact tatgctaagc taaataaact tgaccttgct tctattgtgg ctggagaatt
     3361 tgtgggtatt tttttaaatt atctctttcc aacaaatttt aaagccctac aagaacaata
     3421 tgaaagcatt gtttatcagc tttacacctt taaagatgat tctcctttag cagttataag
     3481 agatcatttt ataacttatc cttttgcaat caattcaaaa ttcattagct ttgatttaaa
     3541 gaaaattttt tatggcatag atctttgcac aggagttttt gacactcatt tttcctttca
     3601 ttatgaaata gatcaaaagc ttgaagaaaa taaagaattt cttttaaaaa gacttttatc
     3661 ttatttgatt attgatgaga aaagatccgc tttaaggata acaaaagatg aaaatgaaac
     3721 tatacaagaa agagatgatt atactttttt taatcaaagt ttaaatagta tagaactcat
     3781 taaatctgaa atttatatcc taaaaaatac tgcattagaa aagtattata aagaagttaa
     3841 tgatgaaatc aatttaacag ccattcaagc ttacaatgaa gctttacaaa ttttacaaga
     3901 ttttgctaat ggactttaca atacaagtaa agataaaaca ggaagatata tagaagataa
     3961 aaataaaacc agaagattac tagaaaaact caatatcata ggacaaaaca atcttaaggc
     4021 tatgtatatg gggataaatg gaaatgaaga aagcttgaaa gctataggca aaagagaaaa
     4081 taacactagc aaagcaagcg caaatgctga tatcacatca gaaacaaaaa ctccgcctaa
     4141 tttcataggc agactagcca ctactataat catagaagat ggtttatata tgggttaaat
     4201 taagaaagga tagataatga gtgaaactta tgagatttat acacctaatg gattaacatt
     4261 agatgtggaa aaagatacca ataaaatact ctttaaagaa aatgttaagc ccacaggcaa
     4321 ctataccgaa gaatattcca aagcggtttt taaatcttat catattatga aaaactcccc
     4381 ctacaaagac tataaacccc aatacctaga tcctaacttt tatacaggac aaaaatccac
     4441 tctagttgaa tttaaagatt ggcaaagtat atatttaaaa gatcctatca aaggagctat
     4501 agctccttgg actaaagcag aaaaagctta ttataaatct ttaaaaacta aaaaagaaag
     4561 atataaatat ttagttataa gaagtggatt aagatctgtg gttatagata taccctatga
     4621 tgcttatgcc aatgtagatg aaaaaggata tttaatcaat gaagaatacg cctatattta
     4681 tgatgaagtt aacaataata aagaaacctt aaaatcttct ctttttagac aagaatgggg
     4741 tatagcagca ggaatactag gaaaacctga atattttgtg cgttctaaaa atcatggctt
     4801 taatgccaga atgatacaat gttttatttt atatattcaa ctcacaggtg gaggatatga
     4861 agaattaggt ataaaaaggg gaatttataa ttatgccgat aatcttttag aaataggtat
     4921 aggtatggca gggatacata aaaatccttt aagggctaaa ttagtaaaag atttagctaa
     4981 aactatacag cctgatgaat ttggtatgct tccttttata gatgagatta tgggagtaga
     5041 ttgggtgatt gatttaaata aatatgattt tgtctatgat gaagaaggca ggatcatttg
     5101 ggctttatat aatgatattg aaaaaagcaa attaaaagat ccaagagata tagattctac
     5161 tccagaaagt agaaataaat ttgatgatgc tatggatgga tacgaaaatg gaatggtaac
     5221 aagatttgat gtagatatta gaaacgaaag agatgaaaga tctgctaaac tgactatgga
     5281 taccctagta ttaagcgcta aactagcagc cttaactcct cctcaaggct atcctaatgc
     5341 cccttattat tttacccctg aaagattgga atggatttat aaaagaggat atttagacaa
     5401 actccttgat ccaagaattc ctgctattta tagatataat tttccgcaag aacttcgagc
     5461 taagataaga gcttatgcta aagagcataa tataaaagag taaaaatcac tcaaaatctt
     5521 taatatactt ttccaatgct ttgatggtaa gattttcaaa aagaatctta tcttctttga
     5581 tattgttttg tatggcagct tcaatatatt taataaacat attttcttcc atttcttcaa
     5641 atattggagt atataattct tttgcgatta ggctaagggc taaaatattg atcaatcttg
     5701 tggatttgat taagggtata ttattaataa tactttcaaa atctttgata ctaatagaag
     5761 aataatcatt atttaattta gagttttgtt gttttgtttt aatatctttt aaatttttta
     5821 ccaaactttt taaaacattt tcatattcta atgaatttgg atttttttga attatttctt
     5881 ttaaaaagct atcatctgcc ttttcttctt cgataaattt ataatcatta ttttctaaaa
     5941 tctcttttaa ctctttgttt ttgtcaaaat ttatacttgt ttttcctcta ggtttaattt
     6001 caatttcatc aaaatgattg cgtttttcaa tatcttctaa gtatttttta ttttctttaa
     6061 tgcttgcttc aatgcttttt gcatccacaa atctaaattc taaattaccg attttaaaaa
     6121 tatcgcctat gctgattatt atttcatagc cacttggcat tctagaaaag gacttattat
     6181 aataaatgtc agaatcttca aaagccgcaa ttgtaaaaga tccttcttca taagatacta
     6241 tggcatgggt atttttgatt tgttctagtt tatcttgaat acgaaaagtg caatcatcac
     6301 cgcttcctat agctccaccc tttgtgttaa atacaaatgt tttagaacca ctaatacatt
     6361 cgtcataatt ctcaatagca attcctattt cttctttttc tatcattgtt tatttacccc
     6421 tgtaatattt tctactattt taagattgtt taaaatataa actatattat ttaattcact
     6481 agcaccgtta ataatttcaa agtcaaaata taagttttta ttattgttaa atataatgct
     6541 gtatatagaa ttacttttat tatcttttat aaacttatac catgcccatt ctcctttata
     6601 tgattttgta taatttaaat taggattaga gtagttatag gctgtaaaat ttaaacttgt
     6661 tccattattg aatttttctg ctacaatttg tagggtttga ttaagagtat gatcgtattg
     6721 gatattttta ttatcatagc caagctttat aaaggaaaaa tccgcactta aatcaaggct
     6781 ttgaatagta aaattaactt ttatattatc attaccattt agtatgagac tagagagatt
     6841 gcctgcattg gtgataaaat ctaaaaattc tttagagaaa tttaattttg aagcaaattg
     6901 agaattgata gaatagttat tttttctttt tactaaaaca ttgttcaagt attttttata
     6961 aaaactattt aatgtcccat ttcttccaaa aaatgtttta aaactatcca tactaagatc
     7021 tgctacactc tcatcattaa aaggataata tggtgcaata tcattaacaa atggattata
     7081 cacttcatta atccaagcag tattaaataa agaaatacca tgattttcta taaaattcca
     7141 cgaataatta gaaagctgac tataatatct ctctaaatca ttaggtaatt tttttatgtt
     7201 catttgaaat acagcaaaag gatcattggc atctttattg cctccaagag catatgaaat
     7261 tttttcttca gcactttggt tattattaga actaaaatct ataattttat tggacatatt
     7321 tgtaatattt gtattaagaa tatctaatat tttttcatca tcagtgcctt tgcccacttc
     7381 tatattacca acactcaaaa gtgtattttt gtttactagc ttatgatatt gtgtgaaagc
     7441 attgcttacc ccaataaaat ttgatctaat ttccccagca tttaacccta aattgtaggc
     7501 ttgagttagt aaaactgcat catttaaatt tgtattagaa ctaacaattt ttaacaaaga
     7561 atataaaggg ttttcttttt ttgataagat attaagctca ttaagcattg cctctttggt
     7621 attataccta acaggttgca atgaagcgag tagattttgc caagcatttt ggtattcact
     7681 taagtataat tttaaaatac ccatagtcaa agtgttttta ttttctttaa aattgttatc
     7741 tagcatccaa gattcaatat tgattgcggt gtcaacttgt tgatttaaat catttaaaaa
     7801 gtccatcata ccaacttttg tatatatttt atctatagaa gttatttgag aattatttga
     7861 aaatacacta tttgcagcaa aacctaaatc ctcttttata agatattttt ctttaggttt
     7921 atcgctattt aaaaaattaa gaagaatgta aattctttga gttctactta tactctcaag
     7981 ttttcttttt cctgtatgta tactgttttc atcttctgta aaagatttaa gattaaattg
     8041 tttaagctca tccacccctt ctagaaagtc atctttagag attgaatact tacttaaagt
     8101 attccaattc tcgttaatcc aaatttttag tatttcttta ttaaaatatt tttgttcaaa
     8161 caaagatcta tacatatata atgttttgat taaattttct ttatttgtat cggtaagtaa
     8221 agtatattcc atttctttta ataaagtatt ttttaacaca tcttcattca gtttataata
     8281 aagttgttta gcttctttaa atcctttgta tgagagattt agatttaaat attgaaatat
     8341 attattatct tgccaaagtt caggataagt atttaaaata tttctcaatt caattaagaa
     8401 gtcagctttt tgtttaatat ttaaattttg ataatcttga tctttaagaa gcaattgtaa
     8461 agatcttaag gtgttttggc ttttttcgaa ttctttatta ttt
//
LOCUS       DBBXPZ010000070         8020 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.072, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000070 DBBXPZ010000000
VERSION     DBBXPZ010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8020)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8020)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8020
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.072"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            8..1258
                     /gene="sdaC"
                     /locus_tag="ACJFD7_001373"
     CDS             8..1258
                     /gene="sdaC"
                     /locus_tag="ACJFD7_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HGG0860169.1"
                     /translation="MNTPKWTSHDTRWVLSLFGTAIGAGVLLLPISAGLGGLIPLLVI
                     LVLAFPMTYLAHRNLCRFVLSSSNPKDDITFVAESYFGKGGGFLITLLYFFAILPILL
                     VYSANLTTTLLEFLINQFNFNADLTHAARWWVSFLIVGVLVLISILGENVVTKAMSFL
                     VFPFIIFLFIFSLLLIPQWNLSLFVNVDFSVISTSNFWVTLWLVIPVMVFSFNHSPII
                     SSLACYCKKEYGGYAEPRARKIISLAIILMVFVVMFFVFSCALTFTPEDFASAKDQNI
                     NILTFIANKFPEVSLLAYVGPIVALVAISKSFLGHYLGSQEGLNGILYKASNGRIQGK
                     FAQTLTAIITFAIAWLVAYKNPSVIGIIEAIGGPVLAILLFLMPLYCIYRFDILARFR
                     NKFLDLFVLVMGIVAISAAIHDLL"
     gene            1273..2637
                     /gene="sdaA"
                     /locus_tag="ACJFD7_001374"
     CDS             1273..2637
                     /gene="sdaA"
                     /locus_tag="ACJFD7_001374"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003941 - L-serine ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HGG0860170.1"
                     /translation="MSNLSIFKIGVGPSSSHTLGPMLAGNLFCKKVAKKLDEIDRVEV
                     TLYGSLSLTGKGHLSDKAVIWGLNGLEAKNLSAAIQDEVNKNAIENAQIDFCGEKKLC
                     FNYEKDLIFSKDFLPLHENGMKIKAYDCKGGLVDEETYYSVGGGFVLTAAELEKKGKN
                     SNQNKKKKLDIELNNAKEALELCDKRDWDLAELSYRYELQFHTKEEIRAYCLEIWEVM
                     QEVYYNGTHPNEDYLPGKLHLKRRAKGLKERVAMTADPMGIIDFISLYAIAIAEENAS
                     GAKVVTAPTNGACAVIPAVMLYLKNHTIGFSDEKAIEFLLTAMLIGSFYKKNASISGA
                     EAGCQAEIGSASSMAAAAMATVLGVNAFKACNAAEMAMEHHLGLTCDPVAGLVQIPCI
                     ERNAFGAIKAISAARMAMTRKSTPMVSLDEVIETMYETGKDMNYKYKETSLGGLATNL
                     KTVC"
     gene            complement(2645..3166)
                     /locus_tag="ACJFD7_001375"
     CDS             complement(2645..3166)
                     /locus_tag="ACJFD7_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860171.1"
                     /translation="MAFMNFSGFFYARNDLRLFKIEKKNELKSFFYKDYTLSSYKDAL
                     NLNNEIFFYQSLKEGLFKENDEILVSNLGKKIILFRNFTQNCDNFNEAKLKQILLLFF
                     LLLASVFFASLAMINEFGAIDLVFLMICLLLLVMGAINLGLLFKQIRILKSFSKEEMK
                     EFLSLRMKKYTKV"
     gene            complement(3147..4157)
                     /gene="ribD"
                     /locus_tag="ACJFD7_001376"
     CDS             complement(3147..4157)
                     /gene="ribD"
                     /locus_tag="ACJFD7_001376"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA];
                     GO_function: GO:0008835 -
                     diaminohydroxyphosphoribosylaminopyrimidine deaminase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HGG0860172.1"
                     /translation="MSNFKIQGRQMKEFYMNLALNEAWKYQFLTYPNPAVGCVILDKN
                     EKILAIKAHEKAGLAHAELNAIAHAFKSLRPEISLPKEANALHEFICKNHQGVFKDSI
                     AFVTLEPCSHQGKTPPCAKLFSELGFKKIFISVKDGNKIASGGAEFLKKQGIEVEFDI
                     LKEEGKKLLKPFLKWQKGQFKLFKLALSMNGSPFGKIVSNELSRTYAHKIRAVIDLLV
                     VGGETIRKDHPILDARLCKAKAPNLCILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEA
                     KFLMYEGGENFLKTFKDEIDMFLIFQSSSLNDEKNVTIPLNFKPLYRNFLGSDTYGIY
                     EL"
     gene            complement(4363..4450)
                     /locus_tag="ACJFD7_001377"
     tRNA            complement(4363..4450)
                     /locus_tag="ACJFD7_001377"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4414..4416),aa:Ser,seq:tga)
     gene            complement(4472..4545)
                     /locus_tag="ACJFD7_001378"
     tRNA            complement(4472..4545)
                     /locus_tag="ACJFD7_001378"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4511..4513),aa:Cys,seq:gca)
     gene            complement(4564..4652)
                     /locus_tag="ACJFD7_001379"
     tRNA            complement(4564..4652)
                     /locus_tag="ACJFD7_001379"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4616..4618),aa:Leu,seq:taa)
     gene            complement(4662..4736)
                     /locus_tag="ACJFD7_001380"
     tRNA            complement(4662..4736)
                     /locus_tag="ACJFD7_001380"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4702..4704),aa:Gly,seq:gcc)
     gene            complement(4808..5560)
                     /locus_tag="ACJFD7_001381"
     CDS             complement(4808..5560)
                     /locus_tag="ACJFD7_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860173.1"
                     /translation="MLAFFKGLGVGFLCLLLFVAGVVFNVEFLGKKDSNHDLYFSRNI
                     EVSNTLKPDILYANINFWANENLSSKITLDNSEKAEITNTFNQILERSKKENFCSGGS
                     FSLEPNFSYKDGIQTPKGQRFDANLECEFKENQLADFNNLLNDINSIIAKNNFISVST
                     PAIQTKFSKDTLNNNKENLYKELLKTSYEYEKTYSLDLNKTCVLKNLQVNANTNIAPR
                     MLNAKSDNIELSSPIISEKEQILNAKALFICK"
     gene            5633..6652
                     /gene="mutY"
                     /locus_tag="ACJFD7_001382"
     CDS             5633..6652
                     /gene="mutY"
                     /locus_tag="ACJFD7_001382"
                     /EC_number="3.2.2.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HGG0860174.1"
                     /translation="MQKKELEKLQENLLLWYEKNGRKTLPWRNLQSQNCDESLKHIDR
                     AYGVYISEIMLQQTQVKSVLERFYFPFLQKFPTLESLANANEDELLKAWQGLGYYTRA
                     RNLKKAALECVDKFGAKLPKEVEDLKKLSGIGAYTAGAIACFGYDQKVSFVDGNIRRV
                     LSRLFALENPSMKELEKRAKELLNLNHAFDHNQALLDIGALVCVGKNAKCGICPLYDF
                     CQGKFNTEFYPRAKKILYESLNLNLFLFEFNKKFAIQKSQDKLYKGMYNFPFFKEGEY
                     KLSKDMSFVGEFKHSYTKYKLNIKVYHQILNNENKNYEFQTLKELESTALSALSLKAL
                     KLIKL"
     gene            complement(6638..7897)
                     /gene="kgtP"
                     /locus_tag="ACJFD7_001383"
     CDS             complement(6638..7897)
                     /gene="kgtP"
                     /locus_tag="ACJFD7_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0860175.1"
                     /translation="MQELTRTKKIRSIIAASSGNLVEWFDFYIYAFTATYFAHTFSTS
                     DNPVIQQINAFGVFAAGFFMRPIGSWLFGSLADKVGRKKSMVISVVLMALGSFMIAAL
                     PSKDTVSDLAIILLLIARLIQGLSVGGEYGIAATYLSELATEGKRGFYSSFQYVTLIG
                     GQLLAVASISIMFLFFSIDDMKDYAWRILFVIGGILALGSLFVRKMMNESATKLHQHE
                     DRGTLKALCKSWKPFLMVLGVTSGGSLAFYTITTYTKTFMENTGMDKMLVNNLFLGAL
                     FILMIIQPLFGYIGDKIGHKRSLIVFCILALVGIYPIFSLIANNAQNNPSLTFMLVVL
                     LFVILSFYTSVAGIFKAKLFPEHVRALGTGLGYAISNAVFGGSAPWVALQFKNAGIEN
                     GFFIYIAIFTIIMLIATLCLPKKSELN"
BASE COUNT         2639 a         1198 c         1359 g         2824 t
ORIGIN      
        1 aagaataatg aatactccta aatggactag tcacgataca aggtgggttt tatctctttt
       61 tggaacagct attggagccg gcgtactttt gttgcctatt agtgctgggc ttggtggatt
      121 gatacctttg ttagttatac ttgttttagc ttttcctatg acttacttag ctcatagaaa
      181 tttatgtcgc tttgtgcttt caagttctaa tccaaaagat gatattactt ttgttgcaga
      241 aagttatttt ggcaagggcg gtggattttt aattacactt ttgtattttt ttgctatttt
      301 gcctatttta ttggtttata gtgctaatct tacaacaact ttgcttgagt tcttaatcaa
      361 tcagttcaat ttcaatgcag atcttactca tgctgctcgt tggtgggtga gttttttgat
      421 tgttggagtt ttggttttga tttctattct tggtgaaaat gttgtaacaa aagcaatgag
      481 ttttcttgtt tttcctttta ttatattttt atttattttt tcattgcttt taattccaca
      541 atggaattta tcgttatttg taaatgttga tttttccgta atttcaacaa gtaatttttg
      601 ggttacttta tggcttgtta ttcctgtgat ggtatttagt tttaatcact ctcctatcat
      661 ttcttcactt gcttgttatt gtaaaaaaga atatggtggt tatgctgaac ctcgcgctag
      721 aaaaattatt tctttggcaa ttattcttat ggtttttgtt gtaatgtttt ttgttttttc
      781 ttgtgcttta acctttacac cagaagattt tgcatcagca aaagatcaaa atatcaatat
      841 tcttactttt atagcaaata aatttcctga agtttcttta ctagcttatg ttggacctat
      901 tgttgcactt gtggctatta gcaaaagttt cttagggcat tatcttggtt ctcaagaagg
      961 cttaaatggt attttatata aagcaagtaa tggtagaatt caaggtaaat tcgctcaaac
     1021 tttaacagcg atcattacct ttgctatcgc gtggcttgtt gcgtataaaa atccaagtgt
     1081 tataggaatt atcgaggcta ttggtggtcc tgttttggct attttgcttt tcttaatgcc
     1141 gctttattgt atttatcgtt ttgatatttt ggcaaggttt cgtaataaat ttttagatct
     1201 ttttgttttg gtaatgggga tagttgcaat ttctgctgca attcatgatc ttttataaat
     1261 taaggataaa aaatgagtaa tttaagcatt tttaaaatag gtgttggccc ttcttcttct
     1321 catactttag ggcctatgct tgctggaaat ttattttgta aaaaagttgc taaaaagctt
     1381 gatgaaattg atagagttga ggttactctt tatggttctt tgtcgttaac aggcaaagga
     1441 cacttgagtg ataaggctgt gatttggggg ttaaatggct tagaagctaa aaatttaagt
     1501 gcggcaatac aagatgaagt aaataaaaat gctattgaaa atgctcaaat tgatttttgt
     1561 ggcgagaaaa aactttgttt taattatgaa aaagatttga tattttccaa agatttttta
     1621 cctttacatg agaatggtat gaaaattaaa gcttatgatt gtaaaggtgg gttagttgat
     1681 gaggaaactt attattctgt aggtggaggc tttgttttaa cagctgcgga attagaaaaa
     1741 aaaggtaaaa attctaacca aaataaaaag aaaaaactag atatagagct taataacgct
     1801 aaagaagctt tagagctttg cgataaaaga gattgggatt tagcagagct ttcctatcgt
     1861 tatgaattgc aatttcacac taaagaggaa attcgtgctt attgtcttga aatttgggaa
     1921 gtgatgcaag aagtgtatta taatggtacg catccaaatg aagattattt gcccggaaaa
     1981 cttcatttaa aacgtagagc taaagggctt aaagaaagag tggcgatgac agctgatcct
     2041 atgggcatta tagattttat ttctttatat gctattgcga ttgctgaaga aaatgctagc
     2101 ggagcaaaag ttgtaaccgc gccaacaaat ggagcatgtg ccgttatccc tgctgttatg
     2161 ctttatctta aaaatcatac tataggtttt agtgatgaaa aagctataga gtttttatta
     2221 acagcaatgc ttataggttc tttttataag aaaaatgcaa gtattagcgg agcagaagca
     2281 ggctgtcaag cagaaattgg tagtgctagt tctatggcag ctgcggctat ggcaacagtt
     2341 ttaggggtta atgcttttaa agcatgcaac gctgctgaaa tggcaatgga acatcatcta
     2401 ggtttaactt gcgatccagt tgcaggactt gtgcaaattc cttgcataga aagaaatgcc
     2461 tttggagcta ttaaggctat aagtgctgct agaatggcaa tgacacgcaa atccactcct
     2521 atggtaagcc ttgatgaggt tatagaaacc atgtatgaaa caggaaaaga tatgaattat
     2581 aaatacaaag aaacttcttt aggtggtctt gctacaaatt taaaaacagt atgctaaagt
     2641 gtttttacac tttggtgtat tttttcattc ttagacttaa aaattctttc atttcttctt
     2701 tggaaaaact tttaagaata cgaatttgct taaaaagcaa gccaagattg attgctccca
     2761 ttactaaaag caataagcaa atcattaaaa aaacaagatc tatggctcca aattcattaa
     2821 tcatagccaa acttgcaaaa aatacgctcg ctaataacaa aaaaaataaa agcaatattt
     2881 gttttaattt tgcctcatta aaattatcgc aattttgagt gaaatttcta aaaagtatga
     2941 tctttttacc caaatttgaa actaaaattt catcattttc tttaaataag ccttctttta
     3001 aactttgata aaaaaagatt tcattattta aatttaaagc atctttgtag cttgataagg
     3061 tgtagtcttt gtaaaaaaag gattttaatt catttttctt ttctatttta aataatctta
     3121 aatcatttct cgcataaaaa aatccactaa agttcataaa tgccataagt atcactccct
     3181 aaaaaattcc tataaagtgg cttgaaattt aaaggtattg taacattttt ttcatcattt
     3241 aaacttgaac tttggaaaat caaaaacata tctatttcat ctttaaaggt tttgagaaaa
     3301 ttttctccac cctcatacat taaaaattta gcttcacttg gaatttgggt ataaatttgg
     3361 cggtttggaa ctttaaataa agggatattt ttatcaaaat tatctatatt ttgacggctt
     3421 aagatacaaa gattaggcgc ttttgctttg caaagcctag catctagtat agggtgatct
     3481 tttcttatgg tttctccacc gactacaagc aaatcaatca ccgctctaat tttatgtgca
     3541 taagtgcgac ttagctcatt gcttacgatt ttgccaaaag gcgagccatt catagaaagg
     3601 gctaatttaa aaagtttaaa ttgccctttt tgccatttta aaaaaggttt taaaagtttt
     3661 tttccttctt ctttaagtat gtcaaattca acctctatgc cttgtttttt taaaaattca
     3721 gccccaccac ttgcgatttt atttccatct ttaacgctga tgaaaatttt tttaaaacct
     3781 agctcgctaa agagttttgc acaaggaggc gtttttcctt gatgagagca aggctcaagt
     3841 gtgacaaaag ctatgctatc tttaaataca ccttgatggt ttttgcaaat aaactcatgc
     3901 aaggcgtttg cttctttagg caatgaaatt tcaggtctta agcttttaaa agcatgagct
     3961 atggcattaa gttccgcatg agctaatcca gctttttcat gagcttttat ggctaaaatt
     4021 ttttcatttt tatctaagat tacacagcct acagccggat ttggataggt taaaaactga
     4081 tatttccaag cctcatttaa agctaaattc atataaaatt ctttcatttg cctaccttgt
     4141 attttaaaat ttgacatatt tttaaaattt tatatttttg ttttaagata acaaattcta
     4201 aattttccat ttgtatttct tatttttaat tatattagcc atagtttttc taagtttttt
     4261 taggatataa caaaaatagt aagaccgaag tattattttt catttgtagt atcctttata
     4321 atttcaggaa tgatataagc ttgataaact agaaagtctt ggtggccggg agaaagggat
     4381 tcgaacccct ggaggtgtga ccctcaacgg ttttcaagac cgccgctttc gaccactcag
     4441 ccatctcccg ataaagtaaa gttttgcctt ttggaggcga catccggatt cgaaccggag
     4501 atcaaggctt tgcaggccca tgccttaccg cttggctatg tcgccctgat aatgttgaaa
     4561 aagtggtgcc cgaggccgga cttgaaccgg cacggaagaa aaattccgag ggattttaag
     4621 tcccttgtgt ctaccaattc caccacccgg gcgggtgatt atggagcggg aaacgagatt
     4681 cgaactcgcg accccaacct tggcaaggtt gtgctctacc cctgagctat tcccgcataa
     4741 atttctgaaa gaattgaaga taaaattata gcaaaataaa cttaaaagga gtttattttg
     4801 ccttaagtta tttgcaaata aataaagctt tcgcgtttaa aatttgttct ttttcgctga
     4861 taattggaga tgaaagttct atattatcag attttgcatt tagcattcta ggtgcgatat
     4921 tggtattggc atttacttgt aaatttttca atacacaagt tttattaaga tctaaagagt
     4981 aagttttttc atattcgtat gatgttttta aaagctcttt gtagagattt tctttgttgt
     5041 tgtttagtgt atcttttgaa aattttgttt gtatggctgg tgttgaaacg ctgatgaaat
     5101 tatttttagc tatgatagaa ttgatgtcat ttaaaagatt gttaaaatct gcaagttggt
     5161 tttctttaaa ttcacattct aaattcgcat caaatctttg accttttgga gtttgtatac
     5221 catctttata ggaaaaatta ggttctaaag aaaaacttcc tccgctacaa aaattttctt
     5281 tttttgagcg ttctaaaatt tgattgaaag tatttgtgat ttcagctttt tcactattgt
     5341 ctaatgtaat ttttgaactt aaattttcat ttgcccaaaa attaatattt gcatataaaa
     5401 tatcgggttt tagtgtattg cttacttcta tatttcttga aaaatataaa tcatgattag
     5461 agtctttttt gcctaaaaat tctacattaa aaactactcc tgcaacaaaa agtaataaac
     5521 ataaaaaacc tacacctaaa cctttaaaaa aagctaacat ggatatcctt aataatttaa
     5581 tttgagctaa ttttagcaaa aaattttaaa attttttgtt atactctcat ttatgcaaaa
     5641 aaaagagctt gaaaaactac aagaaaattt acttctttgg tatgaaaaaa atggacgcaa
     5701 aactttgcct tggcgtaatt tacaaagtca aaattgtgat gaaagtttaa agcatattga
     5761 tagagcttat ggagtttata tcagcgaaat tatgcttcag caaactcaag ttaaatcagt
     5821 tttagaaagg ttttatttcc cctttttgca aaaatttcct actttagaaa gtttggctaa
     5881 tgctaatgaa gacgagcttt taaaggcttg gcaaggactt ggttattaca ctcgtgctag
     5941 aaatttaaaa aaggcagctt tagaatgcgt ggataagttt ggggctaaat tacctaaaga
     6001 agttgaggat ctaaaaaaat taagtggtat aggagcttat acagcaggcg ctatagcttg
     6061 ttttggctac gatcaaaagg tttcttttgt tgatggcaat atacgccgtg tgctttctcg
     6121 tctttttgct ttggaaaatc ctagcatgaa agaacttgaa aaaagagcta aagagctttt
     6181 aaatttaaat catgcctttg atcacaacca agctttgctt gatatagggg ctttggtttg
     6241 tgtgggtaaa aatgcaaagt gtgggatttg tcctttgtat gatttttgtc aaggcaaatt
     6301 taatacagag ttttatccaa gagctaaaaa aatactttat gagagtttaa atttaaatct
     6361 ttttttgttt gaatttaata aaaaatttgc gatacagaaa agccaagata agctttataa
     6421 gggtatgtat aattttcctt tttttaaaga aggagaatat aaactttcta aagatatgag
     6481 ttttgtaggg gagtttaagc acagctatac taagtataaa cttaatatca aggtttatca
     6541 tcaaatttta aacaatgaaa ataaaaatta tgaatttcaa accttaaaag agttagaaag
     6601 taccgcactt tcggcacttt ctttaaaagc gttaaaatta attaagctct gattttttag
     6661 gcaaacacaa agtagctata agcatgatga ttgtaaaaat agctatatag ataaaaaagc
     6721 cattttctat acctgcattt ttaaattgta aagcaaccca aggagcagat cctccaaaaa
     6781 cagcatttga aatagcataa cccaaacctg tccctaaagc tcttacatgt tcaggaaaaa
     6841 gttttgcttt aaaaatccca gcaactgaag tataaaaact taaaataaca aacaataata
     6901 ccaccaacat aaatgtcaaa gaaggattat tttgtgcgtt attggctata agtgaaaaaa
     6961 taggataaat tcctaccaat gccaaaatac aaaatacaat taaagatcgt ttgtgaccta
     7021 ttttatctcc tatatatcca aaaagaggtt gaatgatcat tagtataaat aaagcaccta
     7081 agaaaagatt attaacaagc attttatcca tacccgtatt ttccataaaa gttttagtat
     7141 aagttgtaat ggtgtaaaaa gctaaagaac ctccagaggt aaccccaagt accattaaaa
     7201 aaggtttcca agatttgcat aatgctttta aagtaccacg atcttcatgc tggtgaagtt
     7261 ttgtagcact ttcattcatc atttttctta caaaaagcga gcctagtgct aaaattccgc
     7321 ctattacaaa aagtattctc caagcataat ctttcatatc atcaatgcta aaaaataaaa
     7381 acattatact aatgcttgca acggccaaaa gttgaccacc tattagggtt acatactgaa
     7441 aagatgagta aaaaccgcgt tttccttccg tagcaagttc tgaaagataa gtagctgcta
     7501 tgccatactc cccgcctaca ctaagacctt gaataagtct tgctattaaa agcaagataa
     7561 tagcaagatc gctcactgta tctttgcttg gtaaggctgc tatcataaaa gagcctaaag
     7621 ccattaaaac cactgatata accatagatt ttttacgacc tactttatca gctaaagagc
     7681 caaaaagcca agagcctata ggacgcataa aaaatcctgc tgcaaaaacc ccaaaggcat
     7741 tgatttgctg gataacagga ttatctgaag ttgaaaaagt atgagcaaaa taagttgctg
     7801 taaaagcata gatataaaaa tcaaaccact ctactaaatt tccgctactt gcagcaataa
     7861 tagagcgaat ttttttcgtg cgagtaagct cttgcataaa cccttcctta attttagatt
     7921 tttatttaag tatagtgtga tttttgttta atatatttaa aaataaagaa gagaaataaa
     7981 aaagataaaa atatcgataa aaatgttaca tattttaata
//
LOCUS       DBBXPZ010000071         7811 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.073, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000071 DBBXPZ010000000
VERSION     DBBXPZ010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7811)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7811)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7811
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.073"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            69..491
                     /gene="cgb"
                     /locus_tag="ACJFD7_001384"
     CDS             69..491
                     /gene="cgb"
                     /locus_tag="ACJFD7_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-domain globin Cgb"
                     /protein_id="HGG0860176.1"
                     /translation="MTKEQIQIIKDCVPILQKNGEDLTNEFYKIMFNDYPEVKPMFNM
                     EKQISGEQPKALAMAILMAAKNIENLENMRNFVDKVAITHVNLGVKEEHYPIVGACLL
                     KAIKNLLNPDEATLKAWEVAYGKIAEFYINIEKKLYDK"
     gene            complement(511..2142)
                     /locus_tag="ACJFD7_001385"
     CDS             complement(511..2142)
                     /locus_tag="ACJFD7_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_function: GO:1904680 - peptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HGG0860177.1"
                     /translation="MPFIMELLKQNKLKLISFLLFSFITSAVGVLTLVFINDYLLKNA
                     QNIPIFYFIVLLLIFFISSTIVELGLSIFGQNFIFKMQRRVVKQILDTPLLRVAKVGK
                     ARILASLGSDVRNISFGLLRLPDFLQSSILILCTSVYLCYLSPQIFALCVVWIMVIFI
                     TNNFLMMKVYQYFRKARENDDALQNNYQNILDGHKELLINRDRAKLYYEDEFENNARL
                     KKKNSTLGNLFNNLSNNWTNVILLALVGVEFYLALKFEWASVADATTIALSILFLRTP
                     LVSMIGSFPTLLLAKIALDKIAKLELDDYIEGFKKTHYISEWKKISFRNTQFAYEENF
                     HLNPVNIELKKGELVFLIGKNGSGKSTFCMLLTGLFKPSKGGIYVDDTLIDDKNLDEY
                     RSLISAVFSDFHLFTKTLNKENFASEEKIAFWLEFLELKDKTSVKDNELTLTKLSTGQ
                     KKRLAMLIALLEERDILVLDEWAADQDPVFRRFFYKKLLPLLKEQGKTIFAITHDDAY
                     FDSADRIFLAQNGEISELKGENIKELAKNLVEKFD"
     gene            complement(2179..3486)
                     /locus_tag="ACJFD7_001386"
     CDS             complement(2179..3486)
                     /locus_tag="ACJFD7_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0860178.1"
                     /translation="MRKSKFGTKEIKILGLSSLGGTLEFYDFIIFVFFAEYIANVFFP
                     KDMSEFWALLNTYGVFAAGYLARPLGGIVMAHFGDKFGRKNMFMLSILLMVLPTFVLA
                     FIPGYETLGFLAPILLILIRIFQGIAIGGELPGAWVFVREHCQEKQKAFFLSCLNSAM
                     ALGILLGSIVFLIINAFFSIEEIATYAWRIAFFVGGIFGIISIYLRRFLQETPVFKQM
                     KKESSLSSFPLKDLFKEKDIVKNLFSSMMMTWVLTGCVIVLVLLMPKFMPSILNLSGV
                     EGSYLQILGILGIALGGAFMGYLVDKFGLFKICIFFSLTFVFFSFLYFYALYELKNLV
                     LVCILYSIVCFLGGINVFAPILMSEVFRAKIRFSGISFSYNIAYAISGGITPQLVFWL
                     NTLASKNENPFLYGMSIYMIFLALLAICAVFIVKDKIKFDNHS"
     gene            3574..4370
                     /locus_tag="ACJFD7_001387"
                     /pseudo
     CDS             3574..4370
                     /locus_tag="ACJFD7_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344958.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
     gene            4458..4676
                     /gene="infA"
                     /locus_tag="ACJFD7_001388"
     CDS             4458..4676
                     /gene="infA"
                     /locus_tag="ACJFD7_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HGG0860179.1"
                     /translation="MAKDDVIEIDGTVLEALPNANFKVELDNKHVILCHIAGKMRMHY
                     IRIMPGDKVKVELTPYSLDKGRITFRYK"
     gene            4848..4961
                     /gene="rpmJ"
                     /locus_tag="ACJFD7_001389"
     CDS             4848..4961
                     /gene="rpmJ"
                     /locus_tag="ACJFD7_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HGG0860180.1"
                     /translation="MKVRPSVKKMCDKCKVVRRKGVVRIICENPKHKQRQG"
     gene            4964..5329
                     /gene="rpsM"
                     /locus_tag="ACJFD7_001390"
     CDS             4964..5329
                     /gene="rpsM"
                     /locus_tag="ACJFD7_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HGG0860181.1"
                     /translation="MARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKR
                     VHELSEDEAAAIRKEIQENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQK
                     TKTNARTRKGKRKTVGAKS"
     gene            5339..5731
                     /gene="rpsK"
                     /locus_tag="ACJFD7_001391"
     CDS             5339..5731
                     /gene="rpsK"
                     /locus_tag="ACJFD7_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HGG0860182.1"
                     /translation="MAKRKIVKKKVVKKNIAKGIVYISATFNNTMVTVTDEMGNAIAW
                     SSAGGLGFKGSKKSTPYAAQQAVEDALNKAKEHGIKEVGIKVQGPGSGRETAVKSVGA
                     MEGIKVTFLKDITPLAHNGCRPPKRRRV"
     gene            5759..6385
                     /gene="rpsD"
                     /locus_tag="ACJFD7_001392"
     CDS             5759..6385
                     /gene="rpsD"
                     /locus_tag="ACJFD7_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HGG0860183.1"
                     /translation="MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHG
                     ARKGKISEYGLQLREKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDN
                     VVYRMGFATTRRFARQLVTHGHILVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRA
                     IELTAQTGIVAWVDVEKDKRFGIFTRKPEREEVVIPVEERFIVELYSK"
     gene            6398..7411
                     /locus_tag="ACJFD7_001393"
     CDS             6398..7411
                     /locus_tag="ACJFD7_001393"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HGG0860184.1"
                     /translation="MRNITTSAYTPTEFTIENISDTVAKISAWPFEIGYGITLAHPLR
                     RLLYTSTIGYAPTAIHIDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGESNKEIVE
                     FSFKGSKEIYGKDLNNDQVEVVNKDAYLATINEDAELKFTLIVEKGIGYVPSEEIKEL
                     INDPKFIALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALE
                     AMYKQLSVFDKITNVRSVIKNQATSNELENTKLLQNITDLNLSARSYNCLEKAGVVYI
                     GELALMSVSELAGLKNLGKKSLDEIKNIMESIGFPVGTSKLSDNKEILKNKIAELKAQ
                     NEG"
     gene            7415..7768
                     /gene="rplQ"
                     /locus_tag="ACJFD7_001394"
     CDS             7415..7768
                     /gene="rplQ"
                     /locus_tag="ACJFD7_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HGG0860185.1"
                     /translation="MRHKHGYRKLGRTSSHRAALLKNLTIALVNSGKIETTLPKAKEL
                     RGYVERLITRARLGDFNAHRAVFASLQDKNATNKLVTEIAPKFKDRNGGYTRIIKTRI
                     RRGDAAEMAFIEFVA"
BASE COUNT         3133 a         1197 c         1163 g         2318 t
ORIGIN      
        1 aacacaagtc aatttttttc tcctttttaa gatataaaat atctctttta caacaaaaag
       61 gagaaattat gacaaaagaa caaattcaaa tcatcaaaga ttgtgtgcct attttgcaaa
      121 aaaatggaga agatttaacc aatgagtttt ataaaataat gtttaatgat tatcctgagg
      181 taaaacctat gtttaatatg gaaaaacaaa tttcaggaga acaaccaaaa gctttagcga
      241 tggcgatttt aatggcagct aaaaatatag aaaatttaga aaatatgaga aactttgttg
      301 ataaagttgc cataactcat gttaatttag gggttaaaga agagcattat cctatagttg
      361 gagcttgcct tttaaaagct attaaaaatc ttttaaatcc tgacgaagct actcttaaag
      421 cttgggaagt tgcttatgga aaaattgctg aattttatat caatatagaa aaaaagctct
      481 atgataaata atataagccc attttgggct ttaatcaaat ttttctacta aatttttagc
      541 taattccttt atattctcac cctttaattc gctgatttca ccattttgag ccaagaaaat
      601 tctatcagca ctatcaaaat atgcatcatc atgtgtgata gcaaagattg ttttaccttg
      661 ctcttttagc aaaggtaaaa gttttttata aaaaaatctt ctaaaaacag gatcttgatc
      721 agccgcccat tcatcaagca ctaaaatatc cctttcttca agcaaggcta taagcatagc
      781 taaacgcttt ttttgccctg tagaaagttt ggttaaggtc agttcattat ctttgacact
      841 tgttttatct ttaagttcta aaaactccaa ccaaaaagca attttttctt cgcttgcaaa
      901 attttcttta tttaaggttt tagtaaaaag atgaaaatcg ctaaaaacag cagaaataag
      961 agatctatac tcatctaaat ttttatcatc tataagcgta tcatcaacat aaattccgcc
     1021 tttgcttggc ttaaaaagtc ctgtcaaaag catacaaaaa gtggatttac cacttccatt
     1081 tttacctatt aaaaatacca attcaccttt tttaagttct atatttacag gatttaaatg
     1141 aaaattttct tcataagcaa attgagtatt tctaaaagaa atttttttcc attcactgat
     1201 ataatgtgtt tttttaaaac cttctatata atcatctaat tccaattttg cgatcttatc
     1261 caaagcgatt tttgccaaaa gcaaagtagg aaaagatcct atcatggata ctaaaggggt
     1321 tcgtaaaaac aaaatagaaa gagctatagt tgtagcatct gcaacacttg cccattcaaa
     1381 ttttaaagct aagtaaaact ctacacccac taaagccaaa agaattacat ttgtccagtt
     1441 gtttgagaga ttgttaaaaa gattacctaa agtactattt ttctttttca atcttgcatt
     1501 attttcaaat tcatcttcat aataaagctt ggctctatca cgattgatca aaagttcttt
     1561 atgtccatct agtatatttt ggtaattatt ttgcaaagca tcatcatttt cccttgcctt
     1621 tcgaaaatac tgatatactt tcatcatcaa aaaattatta gtaataaaaa taaccataat
     1681 ccataccaca cacaaagcaa aaatttgtgg tgaaagataa cataaataaa cactagtgca
     1741 taaaatcaat atacttgatt gtaaaaaatc aggcaatctt aaaagcccaa aagatatatt
     1801 tctcacatca cttcctaaag aagctaaaat tctagcctta cctactttag cgactcttaa
     1861 caaaggggtg tctaagatct gctttactac gcgcctttgc attttaaaaa taaaattttg
     1921 tccaaaaata ctaagtccaa gttcaactat ggtagaactt ataaaaaaaa tcaaaagcaa
     1981 aacaataaaa taaaaaatag gaatgttttg tgcattttta agcaaataat cattgataaa
     2041 aacaagagtt aaaactccaa cagcgcttgt aataaaagaa aaaagcaaaa aagaaatcaa
     2101 ctttaattta ttttgcttaa gtaattccat aataaaaggc atttataaac tccaaaatat
     2161 aattttaatt ataacatttt aagagtgatt atcaaatttt attttatctt ttactataaa
     2221 aacagcacaa atagccaata acgctaaaaa aatcatatat atactcatac catataaaaa
     2281 tggattttca tttttgctcg caagtgtatt aagccaaaaa acgagttgcg gagtaatacc
     2341 gcctgaaatt gcataagcaa tattataaga aaaagaaatt cctgaaaatc ttattttagc
     2401 tctaaaaact tcactcatta aaataggtgc gaacacatta atcccaccta aaaaacaaac
     2461 aatcgaatac aaaatacaca ccaaaaccaa atttttaagc tcatataaag cataaaaata
     2521 taaaaaagaa aaaaatacaa aagttaaaga aaagaaaatg caaattttaa ataaaccaaa
     2581 tttatctaca agataaccca taaaagcccc gcctaaagct attcccaaaa ttcctaatat
     2641 ctgtaaataa cttccttcaa ccccacttaa atttaaaata ctaggcataa atttaggcat
     2701 taataaaaca agcacaataa cacaacctgt taaaacccaa gtcatcatca ttgatgaaaa
     2761 taaatttttt acaatatcct tttctttaaa taaatcttta agcggaaaag aactaagcga
     2821 tgattctttt ttcatttgtt taaaaacagg agtttcttgc aaaaatctac gcaaataaat
     2881 agaaataatc ccaaaaattc cacctacaaa aaaagcaata cgccatgcat aagtagcaat
     2941 ttcttctata ctaaaaaaag cattaatgat taaaaatact atacttccta acaaaattcc
     3001 taaagccata gctgaattta aacagcttaa aaagaaagct ttttgttttt cttgacaatg
     3061 ttctcttaca aaaacccaag ctccaggcaa ttctccacct atagctatgc cttgaaaaat
     3121 tcttataagt atcaataaaa taggagctaa aaacccaaga gtttcataac ctggaataaa
     3181 agctaagaca aaggtgggaa gaaccattag taaaatactt agcataaaca tatttttacg
     3241 cccaaattta tctccaaaat gtgccataac tataccacct aaaggacgtg ctaaatatcc
     3301 agctgcaaat actccataag tatttaataa agcccaaaat tcactcatat ctttaggaaa
     3361 aaatacattg gctatatatt cagcaaaaaa tacaaaaata ataaaatcat aaaattctaa
     3421 agttcctcct agtgaagaaa gtcctaagat cttaatttcc tttgttccaa attttgattt
     3481 tctcattgat taattacctt aaattttaaa aacattgttt ttattatact ataatcattt
     3541 ccaaaatatt atctaaaaaa tttaaggata aatatgttta attttataac caccctttta
     3601 aaaaccaatc tttatttttt agaagaaaaa accacaagca aaagttcaaa tcaaacccat
     3661 ataatctcgc ttaaacaatc tgatgatgaa tttttaaatt tattattttc ttttttagtg
     3721 ccacaaaacg atgaagataa gaattttata gaaaaaactc gcacaaaaat caaaagaaat
     3781 gagcataata ttactctgat aaaaaatcca aattttaatg ctttaataga cacagggttt
     3841 ttagatacta ttgatacatt aaagaaaaat tacatatcca caaaaccgat tttaaagata
     3901 tcactcatat tatcttaaca catgcacatc ctgatcatat agaagcttta atgagcgaag
     3961 aaaatctttt tccaaaagct caaattttaa tcgataaaaa agaatatgat ttttggatca
     4021 aaagtgatag acaagaaatt aaaaacacct tgcttaaact taaaaatata gaatttatta
     4081 accactctaa agatttgatc tttcaaaatt caggcattaa agccatacct gcttacgggc
     4141 ataccccagg tcaaaatgct atcataattg atgataaaat agtcttttgg ggagatttac
     4201 ttcatcttta tgatatacaa atcccaaaac ctaaaatcgc tataaaattt gatatagatc
     4261 aaaatgaggc tatacaaaca agggaaaaac tacttaaaga atttaaagaa agaaaactca
     4321 aagttatagg gactcatgca tcttttatcg aacctgaatt tttagattaa ttacttaaaa
     4381 attactaaaa attaagtaaa aattttaata atttttgcta aaattatagc ctttttattt
     4441 catgaaagga gaaaattttg gcaaaagatg atgtaattga aattgatggc accgtacttg
     4501 aagcattgcc taatgcaaat ttcaaggttg aacttgacaa caaacatgta attttatgtc
     4561 atattgcagg aaaaatgcgt atgcattata taagaataat gccaggtgat aaagtaaaag
     4621 tagaacttac accttatagc cttgataaag ggcgtataac ttttagatat aaataatcta
     4681 agttatttaa aagctaattt tagataaaat tagagttttt gcgacaaatt acatcgaact
     4741 atatgaagaa gtatttttaa aatccaccac ttattttgaa aatagttggt tattcataaa
     4801 acctgatgta gtcgtaaatc aagtggaatt cattcaagga gacgctcatg aaagtgagac
     4861 catcggttaa aaagatgtgc gacaagtgca aagtagttcg ccgtaaaggc gtggttcgca
     4921 ttatttgcga aaatccaaaa cataaacaaa gacaaggata aacatggctc gtattgcagg
     4981 tgtggattta ccaaagaaaa aaagaattga gtatggacta acctatattt atggtatagg
     5041 acttttcact tcaagaaaaa ttctagataa agtaggaatt tcttatgata aaagagttca
     5101 tgagttaagt gaagatgaag cagcagctat ccgtaaagaa attcaagaaa actatatggt
     5161 tgaaggggat ttgagaaaac aagttgctat ggatattaaa gcacttatgg atttaggaag
     5221 ctttagaggc ttaagacaca gaaaaggctt accagttcgc ggacaaaaaa caaaaacaaa
     5281 cgcaagaact agaaaaggta agagaaaaac tgttggtgca aaatcataag gataaatcat
     5341 ggcaaaaaga aaaatcgtaa agaaaaaagt agttaaaaaa aatatagcaa aaggtattgt
     5401 ttatatcagt gcgactttta acaatactat ggttacagtg actgatgaaa tgggaaatgc
     5461 tatcgcttgg agtagtgcag gtggtttagg atttaaaggt tctaaaaaat caactcctta
     5521 tgcagcacaa caagcagtag aagacgcttt aaataaagca aaagaacacg gaattaaaga
     5581 agtaggcatt aaagtacaag gaccaggaag cggtagagaa actgctgtta agagtgtagg
     5641 tgctatggaa ggaatcaaag taactttctt aaaagatatc actccattag ctcacaatgg
     5701 ttgcagaccg cctaagcgtc gtcgtgtcta agatataaga aaaatttagg agaatattat
     5761 ggcaagatat agaggaccag tagaaaaatt agaaagacgc tttggtgtta gcttagcatt
     5821 aaaaggagaa agaagactag ctggcaaaag tgcactagac aaacgccctt atgcgccagg
     5881 acaacacgga gcaagaaaag gtaaaattag tgagtatgga cttcaattaa gagaaaaaca
     5941 aaaagctaaa tttatgtatg gagtaagcga aaagcaattc cgtcgtttat ttgctgaagc
     6001 agcaagaaga gaaggaaata caggggtatt acttatccag cttttagaac aaagattaga
     6061 caatgtggta tatagaatgg gttttgctac aacacgtcgt tttgcaagac aacttgtaac
     6121 acatggacat attttagtaa atggtaaaag agtggatatt cctagcttta gagtagaagc
     6181 aggtgctaaa atcgaaatca tcgaaaaaag caaaaacaat cctcaaataa caagagctat
     6241 cgaacttaca gcacaaactg gaatcgttgc ttgggttgat gttgaaaaag ataagagatt
     6301 tggaattttc acaagaaaac ctgaaagaga agaagttgtc attccggttg aggaaagatt
     6361 tatcgttgag ctttactcta agtaataggg gctaaatatg agaaatatta caacatctgc
     6421 ttatacgcca acagaattta caatagaaaa cattagtgat actgtggcta aaatcagtgc
     6481 ttggcctttt gagatcggct atggaatcac cctagcccat cctttacgcc gtttgcttta
     6541 cactagcacc ataggatatg ctccaactgc gatccatatt gatggcgtag ctcatgaatt
     6601 tgatagcatg cgtggtatgc ttgaagatgt agcacttttt atcattaatc taaaaaaact
     6661 acgctttaaa attaaaggcg aatcaaataa agaaatagta gaatttagct ttaaaggctc
     6721 aaaagaaatt tacggcaaag atctaaataa tgatcaagta gaagtagtaa ataaagacgc
     6781 ctatctagca acaattaacg aagatgctga actcaaattc acattgatcg ttgaaaaagg
     6841 tattggctat gtaccaagcg aagaaattaa agagcttata aatgatccta aatttatagc
     6901 tttagatgct ttctttacac ctgtaagaga agcaacctat gatattgaaa aagttttatt
     6961 tgaagataat cctgattatg aaaaagtggt tttaaccgta acaactgatg gacaaatcac
     7021 tccaaatgaa gcttttcaaa atgctctaga agctatgtat aaacaattat cagtatttga
     7081 taaaattacc aatgttagaa gtgtaattaa aaatcaagca acaagcaatg aactagaaaa
     7141 tactaaatta ttgcaaaaca ttacagattt aaatttaagt gctagaagtt ataattgtct
     7201 tgaaaaagca ggagtagttt acataggcga gcttgctttg atgagtgtaa gtgaacttgc
     7261 agggcttaaa aatttaggta aaaaatctct tgatgaaatt aaaaacatca tggaaagcat
     7321 aggttttcct gtgggaactt ctaagcttag cgataataaa gaaatactta aaaataaaat
     7381 cgcagaatta aaagcacaaa acgaaggata aagaatgaga cataaacatg gatatagaaa
     7441 acttggcaga acttcatctc atcgtgctgc cttattaaaa aatttaacta tagctttagt
     7501 aaatagcgga aaaatcgaaa ctactctacc aaaagctaaa gaattaagag gttatgtaga
     7561 aagattgatt actagagcaa gacttggaga ttttaacgct catagagcag tttttgcttc
     7621 attgcaagat aaaaacgcta ctaataaatt agtgactgaa attgctccaa aattcaaaga
     7681 tcgcaatggt ggatatacaa gaatcatcaa aacaagaatt cgccgtggtg atgctgctga
     7741 aatggctttc atcgaatttg tagcttaatc aaatcctagc ttttgctagg attaatactt
     7801 caattaaata c
//
LOCUS       DBBXPZ010000072         7768 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.074, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000072 DBBXPZ010000000
VERSION     DBBXPZ010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7768)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7768)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7768
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.074"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(18..1268)
                     /gene="rpoN"
                     /locus_tag="ACJFD7_001395"
     CDS             complement(18..1268)
                     /gene="rpoN"
                     /locus_tag="ACJFD7_001395"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HGG0860186.1"
                     /translation="MLKQKITQAPKTKISQTLRSWLPILQANIEDLKENLDKFAEDNP
                     FLNVQDSIQTHDKGKNYFDSFYKHNVNSAFVDSKGLAKKSVYELLNEQILPPLFPTNK
                     SQELAKKIIECLNEEGYFEYDEEFLKEYSLEEIERVRARFKFLDPVGVGAKDYKEAFL
                     FALENMELDEDIDEFCRMLIMDFENIQNYTKEPLYKEALAVLKRFSTPPFLEYFEDSR
                     IIVPDIFVYKENGEIKVKINDDYYPEISIQTDGLEHDFLSHYIKEAKNLVDALAMRKA
                     TLYKIGLMIVEYQYDFFMGKEIKPMTFKDLALDLERNASTISRAVANKYLSCERGLIP
                     LRDFFAFALDEEGETSNVGVKEFVANLVKNEDRNKPLSDSKILELIKEEFKVDIGRRT
                     ITKYRKHLNIASSTDRKKLYELEG"
     gene            complement(1268..1996)
                     /gene="lptB"
                     /locus_tag="ACJFD7_001396"
     CDS             complement(1268..1996)
                     /gene="lptB"
                     /locus_tag="ACJFD7_001396"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HGG0860187.1"
                     /translation="MSKLEIVNLEKIIKKTKIIHGISLEVNSGEVVGLLGPNGAGKTT
                     TFYMICGLISPSSGKVLLDGLDVTKDPLNKRARSGIGYLPQESSIFKDLSVEDNLLLA
                     AQIFYKDKKILHDKVEQMLELLSIEPIRLRKGLSLSGGERRRCEIARSLMCEPKFLLL
                     DEPFAGVDPIAVAEIQTLIKELKRLGIGVLITDHNVRETLAICDRAYVIRSGSLLASG
                     NADEIATNKDVKKYYLGAEFKLLD"
     gene            complement(1989..2396)
                     /gene="tsaE"
                     /locus_tag="ACJFD7_001397"
     CDS             complement(1989..2396)
                     /gene="tsaE"
                     /locus_tag="ACJFD7_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HGG0860188.1"
                     /translation="MKEFILAKNEIKTMLQIMPKEGVVLLQGDLASGKTSLVQAWVKF
                     LGLDARVDSPTFSIMQRYENHDICIYHYDIYQEGLEGLLANGLFENFFEKGLHLVEWG
                     GENLKKTLMKFGISTIQIKISIKDDKRKYEIYE"
     gene            complement(2393..2638)
                     /locus_tag="ACJFD7_001398"
     CDS             complement(2393..2638)
                     /locus_tag="ACJFD7_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HGG0860189.1"
                     /translation="MRVDKFLNVVNITKRRAISEDMCKSGVVGINGVIVKASKEVKVG
                     DIITLHFTEYTQKYKVLALPSTKSIPKNAQNEYVVKL"
     gene            2794..4014
                     /gene="argG"
                     /locus_tag="ACJFD7_001399"
     CDS             2794..4014
                     /gene="argG"
                     /locus_tag="ACJFD7_001399"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HGG0860190.1"
                     /translation="MKNEVKKVVLAYSGGLDTSIILKWLQDEYNCEVVTFTADIGQGE
                     ELEPARKKALSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLI
                     AKTQAQIALQTGADAVSHGATGKGNDQVRFELGYLAFNPDLKIIAPWREWDLNSREKL
                     LAYAQKHGIDISKKKGKSPYSMDANLLHISYEGLVLEDPAHAPEEDMWRWSKSPKDAP
                     NESEIIELDFQKGDLVAINGEKLSPAGLLTKLNELGCKHGIGRLDIVENRYVGMKSRG
                     CYETPGGTILLKAHRALESITLDREAAHLKDELMPKYASLIYNGYWFSPERMMLQALI
                     DESQIHANGRVKLELYKGNVIVIGRESSNDSLFNAAYCTFEEDEVYNQKDAAGFIKLN
                     ALRFIIAGKNGRKF"
     gene            4027..4470
                     /gene="rplI"
                     /locus_tag="ACJFD7_001400"
     CDS             4027..4470
                     /gene="rplI"
                     /locus_tag="ACJFD7_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HGG0860191.1"
                     /translation="MKVLLIKDVKALGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVL
                     RKYESDKKKEAENLRFEIVNLEKLKEELSKITLEISKPVGANGSLFGGVTKDEIAHAL
                     KEQSHIEIDKKSLECDILKSLGIHEVSVKLGHAIHAKFNINIKAE"
     gene            4470..5012
                     /gene="hslV"
                     /locus_tag="ACJFD7_001401"
     CDS             4470..5012
                     /gene="hslV"
                     /locus_tag="ACJFD7_001401"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009376 - HslUV protease complex
                     [Evidence IEA];
                     GO_function: GO:0004298 - threonine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0051603 - proteolysis involved in protein
                     catabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HGG0860192.1"
                     /translation="MFHATTILAYKGKNKSVIGGDGQVSFGNTVLKGNAVKIRKLNNG
                     KVLAGFAGSTADAFNLFDMFENLLQSSKGDLLKAAIDFSKEWRKDKYLRKLEAMMLVL
                     DRNHIFLLSGTGDVVEPEDGQIAAIGSGGNYALSAARALAKHTDLDEEELVKSSLQIA
                     GEICIYTNTNIKTYVIEDEK"
     gene            5009..6328
                     /gene="hslU"
                     /locus_tag="ACJFD7_001402"
     CDS             5009..6328
                     /gene="hslU"
                     /locus_tag="ACJFD7_001402"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009376 - HslUV protease complex
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HGG0860193.1"
                     /translation="MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQ
                     DDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDL
                     ANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTK
                     LRNGDLDESTIEIEISQNMFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKN
                     ALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRD
                     LLPIVEGSNVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDK
                     ALYEILTRPKNSLLKQYSQLLKTENLELDFNDEAIKEIAKIASRANEEMQDIGARRLH
                     TVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL"
     gene            6325..7200
                     /gene="era"
                     /locus_tag="ACJFD7_001403"
     CDS             6325..7200
                     /gene="era"
                     /locus_tag="ACJFD7_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HGG0860194.1"
                     /translation="MKSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKA
                     IVMHEKNQIIFIDTPGLHESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYENF
                     LSLNPQVPHIITLNKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDE
                     IVKYLDEHEYFYDPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLINRTKDTPN
                     LLILEANIITDTNSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNW
                     QKDEEFLKKLLNDEN"
     gene            7187..>7768
                     /locus_tag="ACJFD7_001404"
     CDS             7187..>7768
                     /locus_tag="ACJFD7_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860195.1"
                     /translation="MMKINSLNKINFIKSTDLLYAQRTGISKEDELFNNLTADFKLSK
                     PFDYQIAFFKHNEIYHCFLAPVYKLKKSRFCFPEPLIFQALFDERFIEESDYCVLNLY
                     DQTLYLYFYQEGKFINLKKIENFNPSNMDLFFKQNRFIELLKHYESKLLLYQDLDTIK
                     HYFSSQIKCLNLNDILDKNSLLKLSSYSIKNLDQ"
BASE COUNT         2870 a         1274 c         1215 g         2409 t
ORIGIN      
        1 gatagattga tagaatttta tccttcaagt tcatataatt tttttctatc tgtagagctt
       61 gctatattaa gatgtttgcg atattttgta atagttcttc gccctatatc gactttaaat
      121 tcttctttga ttaattctaa aattttacta tcacttaaag gtttatttcg atcttcattc
      181 tttaccaaat ttgctacaaa ttctttaaca cctacatttg aagtctctcc ctcttcatca
      241 agagcaaaag caaaaaaatc acgcaaaggg ataagtcctc tttcacaact taaatattta
      301 tttgccacag ctcttgatat agtcgaagca ttgcgttcta aatcaagtgc taaatcctta
      361 aaagtcatag gttttatctc ttttcccata aaaaaatcat attgatattc tactatcata
      421 agccctattt tataaagagt agcttttctc atcgctagag catcgactaa attttttgct
      481 tctttgatgt aatgacttaa aaaatcatgc tctaaaccat cagtttggat tgaaatttca
      541 ggataataat catcattgat ttttacttta atttcaccat tttctttata aacaaaaata
      601 tcaggaacaa ttatacgaga atcttcaaaa tattccaaaa aaggaggagt gctaaagcgc
      661 ttaagtacag ctaatgcttc tttatataaa ggctctttgg tatagttttg tatattttca
      721 aaatccataa tcaacattct acaaaactca tcaatatctt catctaattc catattttca
      781 agagcaaata aaaatgcttc tttataatct ttagctccca ctcctacagg atctaaaaat
      841 ttaaatcttg ctcttactcg ctcaatttct tccaaagaat actcttttaa aaattcttca
      901 tcgtattcaa aatatccttc ctcatttaag cattctataa ttttttttgc aagttcttga
      961 gatttgtttg taggaaacaa aggaggaaga atctgttcat ttaaaagctc ataaacactt
     1021 tttttggcaa gtcctttact atccacaaaa gccgaattta cattatgttt ataaaatgaa
     1081 tcaaaataat tcttaccctt atcatgagtt tgtatcgaat cttgaacatt taagaaagga
     1141 ttatcctcag caaatttatc taaattttct tttaaatcct ctatatttgc ttgtaaaatc
     1201 ggcaaccaag agcgtaaagt ttgagaaatt ttagtcttgg gtgcttgggt gattttttgc
     1261 tttaacatca atcaaggagt ttaaactccg ctcctaaata atactttttc acgtctttat
     1321 tggttgcaat ttcatcagca ttcccactag caagcaaaga gcccgatctt ataacataag
     1381 ctctatcaca aatagccaaa gtctcacgca cattatgatc ggtaattaaa accccaatcc
     1441 ccaatctttt aagctcttta attaaagttt gaatttcagc cactgctata ggatcaacac
     1501 ctgcaaaagg ctcatcaaga agcaaaaact taggttcaca catcaagctt ctagcgatct
     1561 cacaacgcct tctttcacct ccacttaaac ttaaaccttt ccttaaacga ataggctcta
     1621 tacttaagag ttcaagcatt tgctcaactt tatcatgtaa aattttttta tctttataaa
     1681 aaatctgagc cgctaaaagc aggttatctt ctacacttaa atccttaaaa atactacttt
     1741 cttgaggtaa ataacctatc cctgatctag ctcttttgtt taaaggatct tttgtcacat
     1801 ctaaaccgtc taaaagaact tttccactac ttggggaaat aagtccacat atcatataaa
     1861 aagttgtcgt ttttcctgca ccatttggcc ctaaaagtcc tacaacttct ccgctattaa
     1921 cctctaaaga aattccatgt ataatcttag tttttttaat aattttttct aaatttacaa
     1981 tttctaattt actcataaat ttcatacttt cttttgtcat ctttaatgct aattttaatc
     2041 tggatagtag aaattccaaa tttcattaaa gtttttttca aattttcacc gccccattca
     2101 accaaatgca aacctttttc aaaaaaattt tcaaataaac cattcgctaa aagtccttct
     2161 aaaccttctt gataaatatc ataatgataa atgcaaatat catgattttc atatctttgc
     2221 ataatggaaa aagttggaga atccaccctt gcatcaagac caagaaattt aacccaagct
     2281 tgcactaagc ttgtttttcc gctagccaaa tctccttgaa gcaaaacaac accttcttta
     2341 ggcattattt gaagcatcgt tttgatctca ttttttgcta aaataaattc tttcataatt
     2401 ttaccacata ttcattttgt gcgtttttag gaatgctttt cgtactaggt agagctagca
     2461 ctttatattt ttgagtgtat tcagtaaaat gtaaagtgat aatatcacct accttaacct
     2521 ctttactcgc cttaacaata acgccattaa tccccactac accactttta cacatatctt
     2581 cagaaatagc tcttcttttc gtgatattaa ctacatttaa aaatttatct actctcataa
     2641 aagcaatttt agcaaaaaaa atcaattttt ggaacaaaat ttgcttacgc ctttgcttta
     2701 tttttttaag aaaatagcaa gtaaaaactt ttctttaatg aaatttggat acaattttac
     2761 aattttcaaa tctattttaa caaaggatat cttatgaaaa atgaagtaaa aaaagtagtt
     2821 ttagcgtatt ctggggggct tgatacgagc attattttaa aatggcttca agatgagtat
     2881 aattgtgaag ttgtaacttt tacagcagat attggtcaag gtgaagaact cgaacctgca
     2941 agaaaaaaag ccctttcttt aggcataaaa gaagaaaata ttttcattaa agatttaaga
     3001 gatgaatttg ttaaagatta tgtatttcct atgtttagag ccaatgcgat ttatgaagga
     3061 gaatatcttt taggaacaag tatagcaaga ccacttatag caaaaactca agcacaaatc
     3121 gccctgcaaa caggtgctga tgcagtaagt catggtgcca caggtaaagg aaatgatcaa
     3181 gtgcgttttg aacttggtta tcttgctttt aatcccgatt taaaaatcat cgctccatgg
     3241 cgtgagtggg atttaaacag tcgtgaaaaa ctccttgctt atgcacaaaa acacggtatt
     3301 gatatttcta agaaaaaagg aaaatctcct tattctatgg acgcaaattt acttcatatt
     3361 tcttacgaag gacttgtctt agaagatcct gcacacgcac ctgaagaaga tatgtggaga
     3421 tggagtaaaa gcccaaaaga tgctccaaat gaaagtgaaa ttatagaact tgatttccaa
     3481 aaaggagatt tagtagcgat aaatggagaa aaactaagtc ctgcaggact tttaaccaaa
     3541 cttaacgaac taggctgcaa acacggtata ggacgccttg atatagtaga aaatcgctat
     3601 gtaggtatga aaagccgtgg ttgttacgaa acaccaggtg gtaccatact tttaaaagca
     3661 cacagagcgc ttgaaagcat cacgcttgat agagaagcag cacacttaaa agatgaactc
     3721 atgccaaaat acgcgagttt aatttataat ggctattggt tctcgcctga aagaatgatg
     3781 cttcaagcct taatcgatga gtctcaaatt cacgccaatg gcagagtaaa actcgagctt
     3841 tataaaggca atgtgatagt tataggacgc gaaagttcga acgatagctt gtttaacgca
     3901 gcttattgta cttttgaaga agatgaagtg tataatcaaa aagacgcagc aggctttatc
     3961 aagcttaatg ctttgcgttt tatcatcgca ggaaaaaatg gaagaaaatt ttaataaagg
     4021 aataaaatga aagtattatt aatcaaagat gtaaaagcac ttggaaaagc aggagaaata
     4081 aaagaagtaa aagacggcta cggacaaaat ttcttaatcg ctaaaggctt tgctaaagca
     4141 gctactaatg aagttttaag aaaatatgaa agcgacaaga aaaaagaggc tgaaaattta
     4201 cgctttgaaa tcgtaaattt agaaaaactc aaagaagaac ttagcaaaat cactcttgaa
     4261 atttcaaaac ccgtaggtgc aaatggaagt ttgtttggtg gcgtaaccaa agatgaaatc
     4321 gctcacgccc taaaagaaca aagccatata gaaatcgata aaaaaagttt ggaatgcgat
     4381 atcttaaaaa gcttaggaat ccacgaagta agcgtaaaac ttggacacgc aatccatgct
     4441 aaatttaaca taaatataaa ggcagaataa tgtttcacgc aacaacgatt ttagcttaca
     4501 aaggtaaaaa taaatccgta attggcggag atggacaagt aagctttgga aatacggtgc
     4561 taaaaggcaa tgctgtaaag attagaaaac tcaacaatgg caaagtttta gcaggttttg
     4621 caggatcaac agctgatgct tttaatcttt ttgatatgtt tgaaaatctc cttcaaagtt
     4681 ctaaaggcga tcttttaaaa gcagcgattg acttttctaa agaatggaga aaagacaaat
     4741 acctaagaaa acttgaagcc atgatgctcg tacttgatag aaatcacatt tttctacttt
     4801 ctggtacagg cgatgtggtc gaacctgaag atgggcaaat cgcagctata ggaagtggtg
     4861 gaaactatgc gctttcagct gctagagcct tagcaaaaca taccgattta gatgaagaag
     4921 aacttgtaaa atcaagtctt caaatcgcag gtgaaatttg catttatacc aataccaata
     4981 tcaaaactta tgtaatcgag gatgagaaat gaatctaact ccaaaagaaa tcgttaaatt
     5041 tttagatgat tatgttatag gacaaaaaaa agctaaaaaa atcatagcta tagctttaag
     5101 aaatcgctac cgcagaatgc aacttagccc tgagttgcaa gatgatatag tgccaaaaaa
     5161 tatcttgatg ataggttcta caggtgtagg aaaaacagaa atcgctaggc gtttagctaa
     5221 aatgatgggc tttcctttca tcaaaatcga ggcgagtaaa tatactgaag taggttttgt
     5281 aggtcgtgat gtagaaagca tggtaagaga tcttgccaat gcagctttaa atttggtaaa
     5341 aaatgagcaa agagaaaaaa acaaagataa aatcgatgaa tttatagaaa ataaaatttt
     5401 agaaaaactt ttgccacctt taccaaaggg tatcagcgat gaaaaacaag aagaatataa
     5461 aaacagtctt gaaaaaatga gaactaaact aagaaatggc gatcttgatg aaagcactat
     5521 agagatagaa atttcacaaa atatgttcga taccaatcct aacctacctc ctgaaatggg
     5581 tgcaatgcaa gatatagtta aggttatagg tgttggcagt aaaaaagtca aaaaagaaat
     5641 gaaaatcaaa gacgctaaaa atgctttaaa aaacgaagca ggagaaaaaa tcctagatca
     5701 agaaagtatc aaaagcgaag ccttaaaaag agcggaaaat gaagggatta tttttattga
     5761 tgaaatcgat aaaatcgctg tttcaagcgg aaattcaaac cgccaagatc caagtaaaga
     5821 aggggtgcaa agagacttac ttcctatagt cgagggatca aatgtacaaa caaaaatagg
     5881 tactttaaaa accgatcata ttctttttat cgctgcagga gcttttcatc ttagcaaacc
     5941 aagcgatctt atccctgaat tgcaaggacg ctttccttta agagtggaat tagatagtct
     6001 tgatgataaa gctctttatg aaattttaac acgccctaaa aattcactct taaaacaata
     6061 ctctcagctt ttaaaaactg aaaatttaga acttgatttt aatgatgagg caattaaaga
     6121 aatagcaaaa atagcttcaa gagccaatga agaaatgcaa gatataggtg ctagacgctt
     6181 acatactgtg atagaaaaat tacttgaaga tttaagcttt gaagctgatg agtatgcggg
     6241 taaaaaattc gtagtggata aaaaaatggt agaagaaaaa ctcggagata tcatagaaaa
     6301 taaagatctt gcaaggtata ttttgtgaaa agtggctttg ttagcatcat agggcgtact
     6361 aatgcaggaa aaagtacttt aatcaattcc ttattagaag aaaaaatcgc cctagtttct
     6421 cacaaacaaa atgccacaag gcgtaaaatc aaagccatag tgatgcatga aaaaaatcaa
     6481 atcattttta tcgatacccc aggacttcac gaaagtggtg ctacgcttaa tcaactgctt
     6541 gtccaaagtg ctattaaatc catgggagat tgtgatgtga ttttatttgt ggcaagtgtt
     6601 tttgatagta caaaagacta tgaaaatttc cttagtctaa acccacaagt accacatatc
     6661 atcactttaa ataaagtaga tttaaccgac aatgctacgc ttttaaaaaa acttagcgaa
     6721 tatgcaaaat ttagccaaca ttttaaggct atcattcctt attcttctaa gaaaaaaagc
     6781 tataaaaaag gcttgttaga tgagatagta aaataccttg atgaacatga gtatttttat
     6841 gatcctgaat ttttaagtgc gagtagcgaa aaagaacttt atagagattt catacttgaa
     6901 agtatttatg aaaatttaag cgatgagctt ccttatagta gcgaagtgct tatcaatcgg
     6961 accaaagaca cacctaatct tttaatccta gaagccaata tcatcacaga tacaaactct
     7021 cacaagggta tgcttatagg aaaagaaggg gcaactttaa aaagaatagg caaagatgca
     7081 cgctttaaaa tttcaaaact tgcacaaaaa aaagtacttt taaagctttt cgtaacagtg
     7141 aaaaaaaact ggcaaaaaga tgaagaattt ttaaaaaaac ttttaaatga tgaaaattaa
     7201 ttcattaaat aaaataaatt ttataaaatc tacagatttg ctttatgctc aaagaacagg
     7261 aatatccaaa gaagacgaac tttttaacaa tttaaccgca gattttaagc taagcaaacc
     7321 ctttgactat caaatagctt tttttaaaca taatgaaatt tatcattgtt ttttagcgcc
     7381 tgtttacaaa ttgaaaaaaa gtcgtttttg ctttcctgag cctttaattt ttcaagcttt
     7441 gtttgatgaa agatttattg aggaaagtga ttattgtgtt ttaaatttat atgatcaaac
     7501 tttatattta tatttttacc aagagggaaa atttatcaat cttaaaaaaa tcgaaaattt
     7561 caacccaagc aatatggatt tattttttaa acaaaatcga tttatagaac ttttaaaaca
     7621 ctatgaaagc aaattgctac tttatcagga tttggataca atcaaacatt acttctcatc
     7681 tcaaataaaa tgtttaaatc taaatgatat tcttgataaa aatagtttat tgaaattaag
     7741 ttcatatagt ataaaaaatc tagatcaa
//
LOCUS       DBBXPZ010000073         7500 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.075, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000073 DBBXPZ010000000
VERSION     DBBXPZ010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7500
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.075"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..569
                     /locus_tag="ACJFD7_001405"
     CDS             <1..569
                     /locus_tag="ACJFD7_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860196.1"
                     /translation="KILVSVLSSCLLASALSAVSFKEDSLKVSFEGYKTKDMIGTKGE
                     FKNVEYKFSKSIKDLASYLKGAKATIKPSNAFMGEGNDIITNNITKVFFPALLGDTDI
                     KVVFQDVIAGENKGVISAKITMDKKSTIVPLTYTIKDNKFEAKGQLDLHTFKNGSKAL
                     KALSDVAAGHGGISWPLVDISFNADLAE"
     gene            complement(585..1151)
                     /gene="rsmG"
                     /locus_tag="ACJFD7_001406"
     CDS             complement(585..1151)
                     /gene="rsmG"
                     /locus_tag="ACJFD7_001406"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA];
                     GO_process: GO:0046118 - 7-methylguanosine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HGG0860197.1"
                     /translation="MIFKDYDFLQNYDLKNFEEKVKIYKELLSKFNRIHNLTHLKNID
                     ENIFDSIKILDFYDFSKAKNIADMGSGAGFPAVFLAFLLQSNFHLFEPNPKKAAFLRT
                     LKIECELPNLHIYKEKVQEYKNTFKADIITSRALMDVKPLLEICKNLKDENTVFILWK
                     GSEIYQELENIKDYEIFENNLRRYCILK"
     gene            complement(1152..1712)
                     /gene="ribA"
                     /locus_tag="ACJFD7_001407"
     CDS             complement(1152..1712)
                     /gene="ribA"
                     /locus_tag="ACJFD7_001407"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HGG0860198.1"
                     /translation="MEIKISEIANLPSKWGNFQMQSFKENDKEHLCIFKNTPKDTLNL
                     RIHSECLTGDALGSLKCDCGEQLEFSLKYIEKNGGMVIYLRQEGRGIGLFNKVNAYAL
                     QDKGFDTIKANHQLGFKADERTYEIVEFILKHYEISKVNLLTNNPEKLDSIKEKIITR
                     IPILIEPNRFNVEYLNIKQTQMGHLK"
     gene            1770..2753
                     /gene="hemB"
                     /locus_tag="ACJFD7_001408"
     CDS             1770..2753
                     /gene="hemB"
                     /locus_tag="ACJFD7_001408"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HGG0860199.1"
                     /translation="MFKRFRRLRLNENLRSMVRENSLSVNDLIYPLFVVNGTGIKKEI
                     SSMPDVFQMSLDEILKECQNVVNLGIKAIILFGVLENEKKDSCGSDALDDEGLVARSI
                     REIKKNFPDLFIISDLCFCEYADHGHCGIINPKTKSVDNDATLEISAKQALVHAKAGV
                     DMIAPSGMMDGIITTLRKALDKEGFENLPIMAYSTKFASSYYGPFRDVAESAPSYGDR
                     KSYQMDFANGKEALEESLEDEAQGADILMVKPALAYLDVVKEISLHSNLPLCVYNVSG
                     EYAMLKAAKNAGVIDYEKVLYETIIAFKRAGAKLIITYHAKELAKMLKGEK"
     gene            2750..3670
                     /gene="argF"
                     /locus_tag="ACJFD7_001409"
     CDS             2750..3670
                     /gene="argF"
                     /locus_tag="ACJFD7_001409"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HGG0860200.1"
                     /translation="MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEK
                     NSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVVGAMVDFVMMRVNKHE
                     TLLEFARYSKAPVINALSELYHPTQVLGDLLTIKEWNKMENGIAKVAFIGDSNNMCNS
                     WLIAAAILGFEFSIAIPKNYKISPEIWEFAMKQALISGAKISLSHDKFEALKDKDVVI
                     TDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEK
                     HADVIFEEARNRLYVVKALLCFLDNQRGRE"
     gene            3667..4158
                     /locus_tag="ACJFD7_001410"
     CDS             3667..4158
                     /locus_tag="ACJFD7_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2603 domain-containing protein"
                     /protein_id="HGG0860201.1"
                     /translation="MKELEKYSTCLKRIDEFSQNLGIKKKDRTIFKMKQSENENEKCL
                     VLENGSFDSPEPWFVIDENDEIHTLLSLQSLKNILESLKQSQKENFELRLEKAIYQQI
                     PVDFNDVWTVAMDEIKQKAQNGTMEVSIDLEKLISKIKQEHPNLFVDMQAMIERVNQN
                     ERL"
     gene            4145..5500
                     /gene="hemN"
                     /locus_tag="ACJFD7_001411"
     CDS             4145..5500
                     /gene="hemN"
                     /locus_tag="ACJFD7_001411"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004109 - coproporphyrinogen oxidase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HGG0860202.1"
                     /translation="MRDYKAFVKYSKAGPRYTSYPTAVEFNANFKYEEYIEILKKQDR
                     SLSLYFHLPFCRSACYFCGCNVIYTAKEESKERYLTYIFKELDILSTILDTKREVVQM
                     HFGGGTPTFFSAKQLQNLILKIRSVFGNFSKDAEISCEIDPRFLNEKQAIVLTQNSFN
                     RISFGVQDFDEKVQKEIHRIQSFELTQNALNLVRSKGIKSVNMDLIYGLPYQNLQSFT
                     QTLEKVMLLNPDRLAIFNYAHVPWLKKNMRKFDENTLPSPDVKLEILEFCEKFLSKNG
                     YKMIGMDHFAKENDELFKALENGTLHRNFQGYTTKGGADLVGIGLTSIGEGQRHYAQN
                     FKDMSSYEAALDRGVLPFERGVALSDDDELRKAVIMELMANFKLDIKSIEKEFCIDFQ
                     EYFKEDLKALEEYKDFINFDENFIKVNETGVLLIRNIAMCFDAYMKNISEDKKVFSKT
                     V"
     gene            5502..6767
                     /locus_tag="ACJFD7_001412"
     CDS             5502..6767
                     /locus_tag="ACJFD7_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HGG0860203.1"
                     /translation="MKFSQISDACVKCGKCIPVCTIHEENRDEITSPRGFLDLLAAYK
                     EGSLELDKEAKKVFESCFLCTNCVEVCPSKLRVDNAIEEVRYDIAKKFGIAWYKKLIF
                     FFLRRRKILDLVAKLGYVFQSCAFKIQNENENTGMKARFSMPFVKKGRLLTSFNKKSF
                     LNSNPKFINNDGEKTIGFFVGCLANYFYIDTANAVLKITKELKINVDLMKEQVCCGAP
                     QFFTGDFKSVEVLAKKNIEYFEKKLEKLDAIIVPEATCSAMLKIDYEHFFIMQNDLDW
                     AKRAKCVSSKIYMASEYFYKFTSLEEILKTKNKINYSITYHDPCHARKMQGVFKEPRE
                     LLKTNYHFVEMSNSNTCCGFGGVGMQTDYYDRALSVGLKKAQMIDESKASVVSAECSA
                     CRMQISNALEQNSSKVVFASPLELIAKAL"
     gene            6764..>7500
                     /locus_tag="ACJFD7_001413"
     CDS             6764..>7500
                     /locus_tag="ACJFD7_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5416 family protein"
                     /protein_id="HGG0860204.1"
                     /translation="MMMKIVFKGKSSEYEIQRSCFCVDAFVIKDKIEERDGVDFITSN
                     VDLLEFSDDSFTFEEIVKHFNICDSEDMIIVEDFDMKSNKDNQNQEDDIEHNILKSEK
                     IIHENTKQTSMQFKNLKFFSRIFKNENFLSDFKESKQEVVTIKKHEKLEIFKNLSQED
                     QEISFVKIEILNYDSNEDSLSFNLDIFPSGMSYKYGILKGSMHIILQGKTSSTMLFPF
                     LKSMIYKNKSENSSEKIFTLMINQKKH"
BASE COUNT         2700 a          890 c         1390 g         2520 t
ORIGIN      
        1 aaaaaattct tgtaagtgtt ttaagttctt gcttgttagc ttcggcttta agtgctgtat
       61 cttttaaaga agatagttta aaggtttctt ttgaaggata taaaactaaa gatatgatag
      121 gaacaaaagg tgaatttaaa aatgtagaat ataaattttc taaaagtata aaggatttgg
      181 caagttatct taaaggcgct aaagctacca taaagccaag caatgctttt atgggtgaag
      241 gcaatgatat tataaccaat aatatcacaa aagtattttt ccctgcttta ttgggagata
      301 cggatattaa agttgttttt caagatgtga ttgcgggtga aaataaaggc gttatttcag
      361 caaaaattac tatggataaa aaaagtacta ttgtaccttt aacttatacc atcaaagata
      421 ataaatttga agctaaagga caacttgatt tgcatacttt taaaaatggt tctaaagcat
      481 taaaagcatt aagcgatgtt gctgcaggac atggtggaat ttcttggcct ttagtggata
      541 tcagttttaa tgctgattta gcagaataaa aagtagcctt agggctactt taaaatacaa
      601 tatcttctta aattattttc aaaaatttca taatctttta tattttcaag ttcttgataa
      661 atttcactac ctttccataa aataaaaact gtattttcat cttttagatt tttgcaaatt
      721 tcaagcaaag gcttgacatc cattaaggct cttgaagtga tgatatcagc tttaaaggta
      781 ttcttgtatt cttgaacttt ttctttgtaa atatgtaaat ttggaagttc acattctatt
      841 tttaatgtcc gcaaaaaggc agcttttttg ggattgggtt cgaaaagatg aaaattgctt
      901 tgcagtaaaa aagctaaaaa tacagctgga aatcctgcgc cacttcccat atcggcaata
      961 ttttttgctt tagaaaaatc ataaaaatct aaaattttaa tactatcaaa gatattttca
     1021 tctatatttt ttaaatgagt aagattgtga atgcggttaa atttagataa taattcttta
     1081 taaattttta ccttttcttc aaagtttttt aaatcgtagt tttgcaaaaa atcataatct
     1141 ttaaaaatca tttatttaag atgtcccatt tgagtttgtt ttatgtttaa atactctaca
     1201 ttaaaacgat taggttctat taaaatcggt atgcgtgtga tgattttttc tttgatagaa
     1261 tctagctttt cagggttatt tgtgagtaaa ttaaccttag aaatttcata gtgtttgagt
     1321 ataaattcta caatttcata agttctctca tcggctttaa agccaagctg atgatttgct
     1381 ttaatcgtat caaaaccttt atcttgtaaa gcataagcat taaccttgtt aaaaagccct
     1441 ataccccttc cttcttgtct aagataaatc accattccgc cattcttttc tatatatttt
     1501 agcgaaaatt caagctgttc tccgcagtcg cattttaaac ttcctaaagc atctcctgtt
     1561 aagcactctg aatgaattct tagattgagt gtatcttttg gagtgttttt aaatatgcat
     1621 aaatgttctt tatcgttttc tttgaaactt tgcatttgga aatttcccca tttgctaggt
     1681 aaattcgcaa tttctgaaat ttttatttcc atttactact ctctataatc aaatttatgt
     1741 taagatttta gcaaaaaaag gacaaaaaaa tgtttaaaag atttagaaga ttaaggctta
     1801 atgaaaactt aagatctatg gtaagggaaa attctttaag tgtaaatgat ttgatttatc
     1861 cgctttttgt ggttaatgga acggggataa aaaaagaaat ttcttctatg cctgatgtgt
     1921 ttcaaatgag tttagatgaa attttaaaag agtgtcaaaa tgtagttaat ttaggcatta
     1981 aagccattat actttttggt gttttagaaa atgagaaaaa agacagttgt ggaagcgatg
     2041 ctttagatga tgaagggctt gttgcaagaa gtataagaga gattaagaaa aattttccag
     2101 atctttttat aatcagtgat ctttgttttt gcgaatacgc agatcacggg cattgtggga
     2161 ttatcaatcc aaaaacaaaa agcgtagata atgatgcaac tttagaaatt tcagccaagc
     2221 aagccttagt tcatgcaaaa gcaggggtag atatgatagc acctagtgga atgatggatg
     2281 gtattatcac tactttgcgc aaagctttag ataaggaagg ttttgaaaat ttgcctataa
     2341 tggcgtattc tactaaattt gcatcaagtt attatgggcc atttcgagat gtagcagagt
     2401 cagctccaag ttatggagat agaaaaagct atcaaatgga ttttgctaat ggtaaagaag
     2461 ctttagaaga aagcttggag gatgaagcac aaggagctga tattttaatg gtaaaacctg
     2521 ctcttgctta tcttgatgtg gttaaagaaa tatcccttca ttctaacttg cctttgtgtg
     2581 tttataatgt aagcggagag tatgctatgt taaaggcagc taaaaatgca ggagtgattg
     2641 attatgaaaa agttttgtat gaaactataa tagcttttaa aagagcaggg gcaaagctta
     2701 tcatcactta tcatgctaaa gaattagcta aaatgttaaa aggagaaaaa tgaaacattt
     2761 tttaacttta agagattttt ctaaggagga aattttaagc cttgtaaatc atgctagcga
     2821 gcttaaaaaa gagcctaaaa aacttttaca agataaaact ttagcaatga tttttgagaa
     2881 aaactctaca agaacaagaa tggcatttga attagccata acagagcttg gcggaaaggc
     2941 tttgttttta agcagtaatg atttacaact tagtcgtggt gagcctgtaa aggatacagc
     3001 tagggtggta ggggcgatgg ttgattttgt gatgatgaga gtcaataaac atgaaacttt
     3061 actcgaattt gcaagatatt ctaaagcccc tgtgatcaat gctttaagcg agctttatca
     3121 ccctactcag gttttaggag atttgcttac tatcaaagaa tggaataaga tggaaaatgg
     3181 tatagcaaaa gttgctttta tcggagatag taacaatatg tgcaattctt ggcttattgc
     3241 ggctgcgatt ttgggctttg aatttagtat agctatacca aaaaactata aaattagccc
     3301 tgaaatttgg gaatttgcta tgaaacaggc tttgatttca ggagctaaaa tttccttaag
     3361 tcatgataaa tttgaagcct taaaggataa agatgtagtc attaccgata cttgggtttc
     3421 tatgggtgaa gagaatgaaa aagaacgcaa gattaaagaa tttgaaggat ttatgattga
     3481 tgaaaaggct atgagcgttg ccaataaaga cgcgatattg cttcattgtt tgcctgctta
     3541 taggggttat gaagtgagtg aagaaatttt tgaaaaacat gcagatgtga tttttgaaga
     3601 agcaagaaat cgcctttatg tggtaaaagc cttgctttgc tttttggata atcagagagg
     3661 aagagaatga aagagctaga aaagtatagc acttgcttaa aacgcattga tgaatttagt
     3721 caaaatctag gaataaagaa aaaagataga acgattttta aaatgaagca aagcgagaat
     3781 gaaaacgaaa aatgtttagt tcttgaaaat ggaagttttg attctcctga gccttggttt
     3841 gtgatcgatg aaaacgatga aattcacact ttgctttctt tgcaaagtct taagaatata
     3901 cttgaaagtt taaaacaaag tcaaaaagag aattttgaat tgcgtttaga aaaggcgatt
     3961 tatcaacaaa ttcctgtaga ttttaacgat gtttggacgg ttgctatgga tgagatcaag
     4021 caaaaggcgc aaaatggcac catggaagtt agtattgatc ttgaaaaatt aatttctaaa
     4081 atcaaacaag agcatccaaa tttatttgta gatatgcaag cgatgataga aagggtaaac
     4141 caaaatgaga gattataaag cttttgtaaa atactctaaa gcaggaccac gctacacttc
     4201 ttatcctaca gcagtagagt ttaatgcaaa tttcaaatac gaagaatata tagaaatttt
     4261 aaaaaagcaa gatagatctt tatcgcttta ttttcattta ccattttgta ggagtgcctg
     4321 ttatttttgt ggttgcaatg ttatttatac tgcaaaagaa gagagtaaag aaaggtattt
     4381 aacttatatt tttaaagagc ttgatatttt aagtactatt ttagatacta aaagagaagt
     4441 ggtgcaaatg cactttgggg gcggaactcc aacttttttt agtgctaaac aacttcaaaa
     4501 tttgatttta aaaatcagat ctgtttttgg aaatttttct aaagatgcag agattagctg
     4561 tgagatcgat ccgcgttttt taaatgagaa acaagccata gttttaacgc aaaatagctt
     4621 taatcgtatc agctttggag tgcaggattt tgatgaaaaa gttcaaaaag aaattcatcg
     4681 catccagtct tttgaattaa cacaaaatgc tttaaatctt gtaagaagca aagggataaa
     4741 gtctgtaaat atggatttaa tttatggttt gccttatcaa aatttacaaa gctttacaca
     4801 aactttagaa aaagttatgc ttttaaaccc tgatcgtttg gcgattttta attacgctca
     4861 tgtgccttgg cttaagaaaa atatgagaaa atttgatgaa aataccttgc caagtcctga
     4921 tgttaagctt gaaattttag aattttgtga gaaattttta agcaaaaatg gttataaaat
     4981 gataggaatg gatcattttg caaaagaaaa tgatgagctt tttaaagctt tagaaaatgg
     5041 aactttgcat agaaatttcc aaggttatac taccaaaggc ggtgctgatt tagtcggtat
     5101 tgggcttaca agtataggcg aagggcaaag acattatgcg caaaatttta aagatatgtc
     5161 aagttatgaa gctgcattag atagaggagt tttgcctttt gaaagaggcg tagctttaag
     5221 cgatgatgat gagcttagaa aagcagtgat tatggagtta atggcaaatt ttaagcttga
     5281 tatcaagtca atagaaaaag aattttgcat tgattttcag gagtatttta aagaggattt
     5341 aaaagcttta gaagaataca aagattttat taattttgat gaaaatttta tcaaagtcaa
     5401 tgaaacaggc gttttgctta taagaaatat tgccatgtgt tttgatgctt atatgaaaaa
     5461 cattagtgaa gataaaaaag tattctcaaa aacggtgtaa gatgaaattt agtcaaataa
     5521 gtgatgcttg tgttaaatgt ggcaaatgta tacctgtttg tactatacat gaagaaaatc
     5581 gcgatgaaat tactagtcca agaggatttt tagatctttt agctgcttat aaagagggaa
     5641 gtttagaact tgataaagaa gctaagaaag tttttgaatc ttgtttttta tgcaccaatt
     5701 gtgttgaagt atgtccaagt aaattaagag tagataatgc catagaagaa gttcgttatg
     5761 atatagctaa aaaatttggt atagcttggt ataaaaaact tatttttttc tttttaagaa
     5821 gacgcaaaat tttagatttg gtagctaagc ttggctatgt gtttcaaagt tgtgcgttta
     5881 aaattcaaaa tgagaatgaa aatacaggta tgaaggcaag attttccatg ccttttgtta
     5941 aaaagggaag attgcttaca agttttaata aaaaaagttt cttaaattct aatccaaaat
     6001 ttatcaataa tgatggagaa aaaacaatag gtttttttgt aggttgtttg gcgaattatt
     6061 tttacataga tacggctaat gcagtgctta aaatcaccaa ggaattaaaa atcaatgtgg
     6121 atttgatgaa agaacaagtg tgttgtggag cgccgcaatt ttttacgggt gattttaaaa
     6181 gtgttgaagt tttggctaaa aaaaatattg agtattttga aaaaaaatta gaaaaattag
     6241 atgctattat agttcctgag gccacttgtt cggctatgtt aaagatagat tatgaacatt
     6301 tttttataat gcaaaatgat ttagactggg caaaacgcgc aaaatgtgtg tcatctaaga
     6361 tatatatggc tagcgagtat ttttataaat ttacttcttt agaagaaatt ttaaaaacaa
     6421 aaaataaaat taattatagc attacttatc acgatccttg ccatgcaaga aaaatgcaag
     6481 gggtttttaa agagccaaga gaacttttaa aaacaaatta tcattttgta gaaatgagta
     6541 attctaatac ttgttgcggt tttggcgggg tgggtatgca aacggattat tatgatagag
     6601 ccttaagtgt agggcttaaa aaagcacaaa tgatcgatga aagtaaggct agtgtggtaa
     6661 gtgccgagtg ttcagcttgc agaatgcaaa tttcaaatgc attagaacaa aattcaagca
     6721 aggttgtttt tgctagtcct ttagaactta tagcaaaagc tttgtgatga tgaagatagt
     6781 atttaaaggc aaaagttctg aatatgaaat tcaaagatcg tgcttttgtg ttgatgcttt
     6841 tgtgattaaa gataagattg aagaacgaga tggtgttgat tttatcactt caaatgtaga
     6901 tcttttggaa tttagtgatg acagttttac ttttgaagaa attgtaaaac attttaatat
     6961 ttgtgatagt gaagatatga ttatcgttga agattttgac atgaaatcaa acaaagataa
     7021 tcaaaaccaa gaagatgata tagaacacaa catcttaaaa tccgaaaaaa taatacatga
     7081 aaacacaaaa caaacaagta tgcaatttaa aaatttaaaa tttttttcaa gaatttttaa
     7141 aaatgaaaat tttctttctg attttaaaga aagtaagcaa gaagttgtta ctatcaaaaa
     7201 acatgaaaaa cttgaaattt ttaaaaattt atctcaagaa gatcaagaaa ttagctttgt
     7261 taaaattgaa attttaaatt atgatagtaa tgaagatagt ttaagtttta atcttgatat
     7321 atttccaagc ggtatgagct ataagtacgg aattttaaaa ggctctatgc atattatttt
     7381 acaaggtaaa acttctagta cgatgctttt tccgttttta aaaagtatga tttataaaaa
     7441 taaaagcgaa aattcaagtg aaaaaatttt tactttaatg ataaatcaga aaaaacacta
//
LOCUS       DBBXPZ010000074         7434 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.076, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000074 DBBXPZ010000000
VERSION     DBBXPZ010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7434
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.076"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..592)
                     /locus_tag="ACJFD7_001414"
     CDS             complement(<1..592)
                     /locus_tag="ACJFD7_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HGG0860205.1"
                     /translation="MLKVCNLSKFYELKKHWYLKKERHIIFDNVNFSLNENDNLIILG
                     KSGAGKSTLARILCFLEDPSEGEVWYENLNLHKLDKNKQRLLRKQIQYCFQDQKMALN
                     PYKKIRNLIQDGLENFNLQKNDNLILEFFDFFSLKKQILEQKPYELSGGEATRVGLIR
                     ALVLNPKLLILDEITSALDIKTSKEILTFLYDYQQKN"
     gene            complement(585..1295)
                     /locus_tag="ACJFD7_001415"
     CDS             complement(585..1295)
                     /locus_tag="ACJFD7_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HGG0860206.1"
                     /translation="MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGK
                     ALVRLLDSNFTISFDELSFHNSCIFNFNKEELRNFRSKVALVLQDAELSLYPYLDIGN
                     LCHLVLKTHTKLKQKERKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
                     LNQPQILICDEITASLDKENASKIISILEELKNTAALVCITHDLNLVNSLADEILMLE
                     KNSSNLYSLDEFLRYYNA"
     gene            complement(1292..2086)
                     /locus_tag="ACJFD7_001416"
     CDS             complement(1292..2086)
                     /locus_tag="ACJFD7_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0860207.1"
                     /translation="MILFKFLIILAPLIFLFLCALSAPFLAPFDILSTHLENLHQAPN
                     FTYILGTDFLGRDLFSRLLFALRNSLIIGVGGSLLSIIFALCYLFLARCFFYVFWMRI
                     LEFFLALPAFLLMMFFQSMITSDVFLMIFLIALIHWCFIARIIESELKRLENLDFYKA
                     NIVLGRTKFRAFFKDLIPALKTLIFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGT
                     LLSESSKAVFIGAWWMILFPLLSLLLLFLPLLWLGNFLQKIWGIRS"
     gene            complement(2073..3017)
                     /locus_tag="ACJFD7_001417"
     CDS             complement(2073..3017)
                     /locus_tag="ACJFD7_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0860208.1"
                     /translation="MLKRLVFSIFIAFFSTFLCFVLLYFSKGSIAYANGVNSQSKEFV
                     QRIEQNLGLDKPLLEQYKIWLFKALKGDLGVSFLSGESVLKLIKERIFNTFILGFSAL
                     MLLFLLSVFLALLGYYYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPV
                     MGSSDIGFEDDFLNRLEHLIFPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARA
                     LREKDIYFLVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYEGLGSLLFKSIIFKDY
                     PVVLALIFFSVLLAAFFTFLSDIVARILNPRLRRLDFV"
     gene            complement(3017..4552)
                     /locus_tag="ACJFD7_001418"
     CDS             complement(3017..4552)
                     /locus_tag="ACJFD7_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HGG0860209.1"
                     /translation="MLRWFILLFLLFFNVEAKIPKDTLIVAVENEISRINPAYSEDHD
                     AVINLVFSGLTRFDENMSLKPDLAKSWDVSKDGLVYDIFLRDDVLWHDGVKFSADDVK
                     FSMEAFKNPKNNSSVYVNFEDIKSVEILNPSHVKITLFKPYPAFLDALSIGMLPRHLL
                     ENENLNTSSFNQNPIGTGPYKFVKWKKGEYVEFKANEHFYLDKVKTPRLIVKHVFDPS
                     IASAQLKNGKIDAALIDVSLLNIFKNDENFGILREKSADYRALMFNLDNEFLKDLKVR
                     QALNYAVDKESIVKNLLHDYAFVANHPLELSWVNSKNFKIYKYDPKKAEDLLVSAGFK
                     KNKDGNFEKDGKILEFEIWAMSNDPLRVSLAGILQSEFRKIGVVSKVVAKPAGSFDYS
                     KVDSFLIGWGSPLDPDFHTFRVFESSQDSALNDEGWNFGHYHDKKVDIALQKARNTSN
                     LEERKKYYKDFIDALYENPPFIFLAYLDFALVYNKDLKGIKTRTLGHHGVGFTWNVYE
                     WSK"
     gene            complement(4656..7433)
                     /locus_tag="ACJFD7_001419"
     CDS             complement(4656..7433)
                     /locus_tag="ACJFD7_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding and (Fe-S)-binding domain-containing
                     protein"
                     /protein_id="HGG0860210.1"
                     /translation="MANFKAFYNEAKYIFKDRIFNDYARCYAYGIDASCYFYIPKIVI
                     IAKNEDEIKQIIQLANTYKTPITFRAAGTSLSGQSSCDGVLVVIKFAFKKIKINKDAN
                     EITLGCGVVGIHANESLAFLKKKIGPDPATINSALIGGIINNNSSGMCCGTKDNSYKT
                     LRSIRVILANGSMLDTSDALSVARFKDENKKLINELREIKEEINANKELKDLIIKKFK
                     IKNTTGYSLNAFVDYDDEIDILAHLLVGSEGTLGFVSEVKLAVLDDLEFKACALLFFD
                     NINNAANTIKEFAKVDFISSAEIMDYASLKAASTYDELRDILADIKEGNTCVLIQSEH
                     SNELKLDENINKIKEISKLAYKSYFSKNKAEYDLWWKIRKALLPIAASLRKAGSTVIT
                     EDVCFNIEDLADGIKSIQELFYKYGFSDNGIIFGHALAGNIHFIITPDLNNKLEFDNF
                     SNLVKEMSNIVASYGGSIKAEHGTGRMVAPFVEVEWGKQAYLINKKIKSIFDKDNLFN
                     PDVIISDDKDIYKKNIKQASWIDEKLNTCMECGFCERFCPSNEYTITPRQRIAILREI
                     KRLESLNDDESKAKLKDIKKYYNHLVDSSCAACGVCSFSCPLGINFADFSLKYRKNNI
                     GFISKILGNLAYKNHEKTLKIAKFSLSIANKFDNLSLDNKLEKASNFLSIIPRTRAYL
                     PKVNDYELKSRKRACNVVYFTSCLNKSFKPNEKMHDKRSLQEVFESLCKKANIGIIYA
                     PNDLCCGKAYENFQDIQDKNIQKINDFLSNIDSPIVLDHSACSAKLISDHSKYEIYDL
                     SEYLLKFIAPKLRIDKINENVGLYIMCAARKLGLNENIIKLAKLCTNGKVLIDNDTYC
                     CGFAGYKGFFKPQLNISATKGFKKFYAKTNIKRGFSTSSTCEIGLSDATGISWQHIAY
                     LLDECSEKQFN"
BASE COUNT         2746 a         1350 c          826 g         2512 t
ORIGIN      
        1 tatttttttg ctgatagtca tataaaaaag ttaaaatttc tttagaagtt ttaatatcaa
       61 gcgctgaagt aatttcatct aaaatcaaca atttaggatt taaaaccaaa gcacggataa
      121 gacctacacg tgtggcttct cctccgctta actcataggg cttttgttct aaaatttgtt
      181 tttttagact aaaaaaatca aaaaattcta aaatcaagtt atcattcttt tgtaaattaa
      241 aattttccaa accatcttgt ataagatttc tgattttttt ataagggttt aaagccattt
      301 tttgatcttg aaagcaatac tgaatttgct ttcttaaaag tctttgtttg tttttatcaa
      361 gcttgtgcaa gttaagattt tcataccata cctcaccttc acttggatct tctaaaaaac
      421 aaagaattct agctaatgtg cttttacctg caccactttt acctaaaatt attaaattgt
      481 cattttcatt taaagaaaaa ttgacattat caaaaataat atgtctttct ttttttaaat
      541 accaatgctt tttaagctca taaaacttac ttaaattaca aactttaagc attataatac
      601 cttaaaaact catctaagct atataaattt gaactatttt tttctagcat aagaatttca
      661 tctgctaaag aatttaccaa atttaaatca tgagtgatac aaactaaggc tgcagtattt
      721 tttaattctt ctaaaatcga tatgatcttt gaagcgtttt ctttatccaa agaagctgtg
      781 atttcatcac aaattaaaat ttggggttga tttaataatg ccaaagctag gctcaccctt
      841 cttgccatac ccaaacttaa ttcattagca taagaatgcc acaaacgatc aagattttca
      901 aatcctaatt tttgaaaata agaaaaagcg taatcttttc tttctttttg ttttaatttt
      961 gtatgagttt ttaaaacaag atgacataaa tttccaatat ccaaataagg ataaagacta
     1021 agctctgcat cttgcaaaac aagtgccacc ttagaacgaa aatttctaag ctcttctttg
     1081 ttaaaattaa aaatacaaga attatgaaaa cttaattcat caaaacttat tgtgaaatta
     1141 gaatctaaaa gtcttaccaa agcttttccc aacaaacttt tacccactcc actttgtcct
     1201 agtatcatta aagttttgcc tgtttttata tctaaattaa tatccttaag caataaatta
     1261 ttcttcaaac tgatatttaa atttcttacc ttcaagatct tataccccaa attttttgta
     1321 aaaaattacc caaccataaa agaggtaaaa acaacaaaag caagcttaaa agtggaaaaa
     1381 gtatcatcca ccaagcgcct ataaaaactg cttttgaaga ctcactcaaa agagtaccta
     1441 aagttggaat ttcaaatcct aaacccagtc caaaaaaact caaagtagct tctgtggcta
     1501 tagcatgaac gatattaaat ataaaaagtg taaaaatcag tgtttttaaa gcaggtatta
     1561 aatctttaaa aaaagctcta aatttagttc ttccaagcac tatatttgct ttgtaaaaat
     1621 ctaaattttc aagtcttttt aattcacttt ctataattct tgctatgaaa caccaatgaa
     1681 ttaaagcgat taaaaaaatc atcaaaaaca catcagaagt tatcatactt tgaaaaaaca
     1741 tcataagtaa aaaagcaggc aaggctaaaa aaaactctaa aatacgcatc caaaaaacat
     1801 aaaaaaaaca tcgcgctaaa aacaaatagc acaaagcaaa gataatagac aataaagatc
     1861 caccaacacc tataatcaaa gaatttctca aagcaaaaag caaacgagaa aacaaatctc
     1921 tgcctaaaaa atcagtccct aaaatataag taaaattagg agcttgatgc aaattttcta
     1981 aatgagtgct taaaatatca aaaggagcca aaaaaggtgc agacaaggcg cataaaaaca
     2041 aaaaaattaa aggcgcaaga atgataagaa atttaaacaa aatcaagcct tcttaatcta
     2101 ggatttaaaa tcctagctac aatatcactt aaaaatgtaa aaaatgctgc aagcaaaacg
     2161 ctaaaaaata taagtgcaag tacaacagga taatctttaa aaataatact tttaaaaagt
     2221 aaagacccaa gtccctcgta agcaaagaca ctttctacca cataagttcc catcataaaa
     2281 cttaaagcac ttcccccaaa ataagctaca ataggactta aagaatattt caaaactaaa
     2341 aaataaatat ctttctccct taaagcccta gcgtataaat tttgaataaa aatttgagaa
     2401 aaactttcat tgataaaatt tctagcaatc cttaaaaata acgccaaatg tgataaaacg
     2461 agcaccaaaa caggaaaaat caaatgctct aaacgattta aaaaatcatc ttcaaagcct
     2521 atatcactac ttcccataac aggcaaaatt ttccaaaaaa ttccaaaaat caaaacaaac
     2581 aataaagcca aaacaaaagg aggtaaagca aaaaaattaa aagctaaaaa agtgatgatt
     2641 ttatctataa aactttcttt ataataatat cccaaaagtg ccaaaaaaac actgagtaaa
     2701 aataaaagca ttaaggcgct aaaacccaaa ataaaagtat taaaaattct ttcttttata
     2761 agctttaaaa cactttctcc gcttaaaaaa gaaactccca aatctccttt taaagcctta
     2821 aaaagccaaa ttttatactg ctctagcaaa ggcttatcaa gccctaaatt ttgttctatt
     2881 ctttgaacaa attctttact ttgtgaatta actccattag cataagctat actgccttta
     2941 ctaaaataaa gtaaaacaaa acacaaaaaa gtgctaaaaa atgctatgaa aatactaaaa
     3001 actaagcgtt ttagcactat ttactccact cataaacatt ccaagtaaaa cccactccgt
     3061 gatgacctaa agtccttgtt ttgatacctt ttaaatcttt attataaacc aaagcaaaat
     3121 caagataggc caagaaaata aaaggaggat tttcatacaa agcatctata aaatctttat
     3181 aatatttttt tctctcttct aaatttgaag tatttcttgc tttttgcaag gctatatcca
     3241 cttttttatc atgataatgt ccaaaattcc aaccctcatc atttaaagca ctatcttgcg
     3301 aactttcaaa taccctaaaa gtgtgaaaat caggatctaa aggacttccc cagcctatta
     3361 aaaaactatc tactttagaa taatcaaaac ttccagcagg tttagccacc accttgctta
     3421 caactcctat ttttctaaat tcgctttgca aaattccagc taaacttacc cttaaaggat
     3481 cattgctcat cgcccaaatt tcaaattcta aaattttccc atctttttca aaatttccat
     3541 ctttattttt cttaaaacct gcactcacaa gcaaatcctc ggctttttta ggatcatatt
     3601 tgtaaatttt aaaattctta gaatttaccc aagaaagctc taaagggtga ttagctacaa
     3661 aagcataatc atgtaaaaga ttttttacta tactttcttt atcaactgcg taatttaaag
     3721 cttgtcttac ttttagatct tttaaaaatt cattatctaa attaaacatt aaagcccgat
     3781 aatcagccga tttttcacgc aaaattccaa aattttcatc atttttaaaa atatttagca
     3841 aagaaacatc gattaaagct gcgtctatct tgccattttt aagctgggca ctagctatag
     3901 aaggatcaaa aacgtgtttt acaataagtc ttggagtttt taccttatca agataaaaat
     3961 gttcattggc tttaaattca acatattcac cttttttcca ttttacaaat ttataaggac
     4021 ctgtacctat aggattttga ttaaaagagc ttgtgtttaa attctcattt tcaagcaaat
     4081 gtctaggaag cattcctatg cttaaagcat ctaaaaatgc aggataaggt ttaaaaagtg
     4141 tgatttttac atgagaagga tttaaaattt ccacactttt aatgtcttca aaattgacat
     4201 aaacagaaga attgttttta ggatttttaa aggcttccat actaaatttc acatcatcag
     4261 cactaaattt gactccatca tgccataaaa catcatctct taaaaaaata tcataaacaa
     4321 gcccgtcttt actaacatcc caagacttag ccaaatcagg ttttaaactc atattttcat
     4381 caaaacgcgt aagccctgaa aatacaagat taatcaccgc atcatgatct tcgctatatg
     4441 caggatttat ccttgaaatt tcattttcca cagctacgat taaagtatct tttggaattt
     4501 tagcctcaac attgaaaaac aataaaaata gtaaaataaa ccatctaagc acttgtaact
     4561 cctcaaattt aaaattaaaa aaattataaa ataaaaaata agaagccaca agccctatag
     4621 ggggataatt tgctttaaat tatggatttt atttatcaat taaattgctt ctcactgcat
     4681 tcatccaata aatacgctat atgctgccaa gatatacccg tagcatcgct taatcctatc
     4741 tcgcaagtgc ttgatgtact aaacccgcgc ttaatatttg ttttggcata aaatttttta
     4801 aagccttttg tagcactaat atttaattga ggcttgaaaa agcccttgta tccagcaaac
     4861 ccacaacaat aggtatcatt atctattaat acttttccat tcgtgcatag ctttgcaagc
     4921 ttgattatat tttcatttaa accaagcttt ctagcagcac acatgatata taatcctaca
     4981 ttctcattga ttttatcaat gcgtaactta ggagcaataa attttaataa atactcgctt
     5041 aaatcataaa tttcatactt tgaatgatcg ctaattaact tagcactaca agcactatga
     5101 tctaacacta tgggcgagtc tatattgctt aaaaaatcat tgattttttg tatattttta
     5161 tcttggatat cttgaaaatt ctcataagcc ttaccacaac ataaatcatt gggtgcataa
     5221 ataatgccta tatttgcttt tttacacaag ctctcaaata cttcttgcaa acttctttta
     5281 tcatgcattt tttcatttgg tttaaagctt ttattaagac agcttgtaaa ataaaccaca
     5341 ttgcaagctc ttttacgact ttttaactca taatcattca ccttaggcaa atacgcccta
     5401 gttcttggta taatgctaag aaaattgctt gctttttcga gcttattatc aagacttaaa
     5461 ttatcaaatt tatttgcgat acttaatgaa aatttagcaa tttttagagt tttttcatga
     5521 tttttatatg ctagatttcc taaaatttta gatataaatc ctatattatt ttttctatat
     5581 tttaatgaaa aatcagcaaa attaatcccc aaaggacatg aaaaagagca caccccacaa
     5641 gcagcacaag agctgtctac taaatgattg taatattttt taatatcctt taattttgct
     5701 tttgactcat catcatttaa gctttcaagg cgtttgatct ctcgtaagat cgcaattctt
     5761 tgtcttggag taattgtata ttcatttgat ggacaaaatc tttcgcaaaa tccacattcc
     5821 atacaggtat ttaatttctc atcaatccaa ctggcttgtt tgatattttt cttataaata
     5881 tctttatcat cgctaatgat tacatcggga ttaaataaat tatccttatc aaagatactt
     5941 ttgatttttt tattaatcaa ataagcttgc ttaccccatt ctacctccac aaaaggtgcc
     6001 accatacgcc ctgtgccgtg ttcagctttt atacttccac cataagaagc tactatatta
     6061 gacatttctt taactagatt tgaaaaatta tcaaattcaa gcttattgtt taaatccggt
     6121 gtgataataa aatggatatt gcctgctaat gcatggccaa aaatgattcc attatcacta
     6181 aaaccatatt tataaaacaa ttcttgaatg cttttaattc catcagctaa atcctcgata
     6241 ttaaaacaca catcttcagt aattaccgtt gagcctgcct ttctaagact agctgctata
     6301 ggcaagagtg cttttctaat cttccaccat aaatcatatt cggccttatt cttactaaaa
     6361 tatgacttat aagctagttt ggaaatttct tttattttat ttatattttc atcaagctta
     6421 agctcattac tatgctcact ttggatcaat acacaagtat taccctcttt aatatcagct
     6481 aaaatatctc ttaactcatc ataagttgat gcagctttta aacttgcata gtccattatt
     6541 tcagcagaac ttataaaatc aactttagca aattctttta tagtgtttgc agcattattg
     6601 atattatcaa aaaacaataa agcacaggcc ttaaattcca aatcatccaa aacagcaagc
     6661 ttaacttcgc ttacaaatcc caaagtccct tcagagccaa caagtaagtg tgctaaaatg
     6721 tctatttcat catcataatc aacaaaggca ttaaggctat aacctgtggt gtttttgatt
     6781 ttaaattttt tgattattaa atcttttaat tctttattgg cattaatctc ttctttgatc
     6841 tctctaagtt cattaattaa ttttttattt tcatctttaa atcgagccac gcttaaagca
     6901 tcgctggtat caagcatact accatttgcc aaaatcaccc taatacttct taaggtttta
     6961 tagctattat ccttagttcc acagcacatt ccgcttgaat tgttatttat aatccctcca
     7021 attaaagctg aatttatagt agctggatca ggtcctattt ttttcttcaa aaaagcaaga
     7081 ctttcattag catgaatgcc tactacaccg catcctaaag taatttcgtt agcgtctttg
     7141 ttaattttta tttttttaaa ggcaaattta atcactacaa gtactccatc acaagagctt
     7201 tgtccactta aacttgtacc tgctgctcta aatgttatag gagttttata agtatttgct
     7261 aattgaataa tttgcttaat ttcatcttca tttttagcaa taatcactat ttttggaata
     7321 taaaaataac acgacgcatc aatgccataa gcatagcatc tagcataatc attaaaaatt
     7381 ctatccttaa aaatatactt agcctcatta taaaaagctt taaaatttgc cata
//
LOCUS       DBBXPZ010000075         7409 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.077, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000075 DBBXPZ010000000
VERSION     DBBXPZ010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7409
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.077"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            118..1608
                     /locus_tag="ACJFD7_001420"
     CDS             118..1608
                     /locus_tag="ACJFD7_001420"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HGG0860211.1"
                     /translation="MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYDFNLNRSSSV
                     ATVGNEKIGFSEFDTRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLN
                     FAKDLGIGVNENEILQKLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEV
                     ITDKLNQIFNIPSKDEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHK
                     EDYKTKKIYEISTYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEV
                     AKDYALMQLKNVANTKFLDLKNGKDNFQKDQNISESDVYYPIDLLNKAKNGDVLRPAP
                     YNNGYIIVKLNKVDPIRNKTFEEAREEVLLMYLSEQTRKNLEEKAKNSLVNFKGDDIG
                     FVSRDSSRESVKVSDKILNDSEFAYFLMNVFNTDQNSSYVVINDNKAILYKINKQKLD
                     MNSDKFEQYKTMLEQNLQNLKANELKQELVDELKKIYPIKIYYKGN"
     gene            1605..2993
                     /gene="ftsA"
                     /locus_tag="ACJFD7_001421"
     CDS             1605..2993
                     /gene="ftsA"
                     /locus_tag="ACJFD7_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HGG0860212.1"
                     /translation="MILNILGIDLGSTQTCAIIAQKDEDGLKIIGFSKSKTNGVKKGA
                     ITNIELASKSIEEAVRSAEMMSGVHYDRVVVSISGAYTKSVDSIGVVNIPNHEIGIKE
                     IHRAVSTAKHTANLPSGYEIIHVLPYNFKVNDLEHVDDPLGMSGNRLEVSTHIVISQE
                     SHIKNLKKAVELADLRVDNIVLSGYASAIACLDDSEKELGAVLIDMGGAICDMVVHTG
                     NSIRYNDCLQIGSINITQDLSMALHTPLKEAEKIKLNYAALSQQPNTLIQIPSMGDER
                     KVNEVSLDIISNVIYARAEETLMILAKILSDNRYANAIGGGVVLTGGMTKLAGIDELA
                     PATFDNRSVRLATARKDLITGFSEIFNDPENTCAIGLCLYGAGYFTPYELDSNEKLRY
                     KGEIENFNRQIKQDIVLQKDTESEIKSDFFDENLQENDTIAIQEQLDFKEPKEKKPSV
                     FSNIWHKIMNQF"
     gene            3009..4121
                     /gene="ftsZ"
                     /locus_tag="ACJFD7_001422"
     CDS             3009..4121
                     /gene="ftsZ"
                     /locus_tag="ACJFD7_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HGG0860213.1"
                     /translation="MSEFLVEEMQHNKGAKIKVIGCGGGGGNMINHMVKMGLNDLDLI
                     AANTDAQAISISLAKTKIQLGEKKTKGLGAGMLPEVGAESARESFEEIKASLSQSDIV
                     FIASGFGGGTGTGATPVIAQAAKEIGALTVSVVTMPFAFEGKQRKKLAESGLLELKKE
                     SDSILVIQNEKLLSIIDKKAGIKDAFRLVDDILARAVKGMVSILLDNGDINVDFADVR
                     TIMSHRGLALMGVGSASGENAIEEALSNAIESPLLDGMDIKGAKGVILHFKTSSNCSL
                     FEISAAANSIQEIVDENAKIIFGSTTDDSMEDRVEVTIIATGFEDKDTVAKKSTEEAQ
                     ASKKNPYLSLKKVSGGYDEEIMAQIETPTFLRRQMD"
     gene            4277..5089
                     /locus_tag="ACJFD7_001423"
     CDS             4277..5089
                     /locus_tag="ACJFD7_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body protein"
                     /protein_id="HGG0860214.1"
                     /translation="MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADF
                     KRIFKETQDELPIENHTRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMT
                     REDAFYLVQTKDGEVRLTKDGNFQLDDEGYLVNKQGYKVLSSDYFNNPQNAGIRIPNS
                     AVQISVDKNGSIEVDGAQNARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLKNSNAI
                     RQGFSQGSNVNPVTEMVGLIEANRMVEMYQKVMTAHMDDLNQEAINKLAAVK"
     gene            5118..5909
                     /gene="flgG"
                     /locus_tag="ACJFD7_001424"
     CDS             5118..5909
                     /gene="flgG"
                     /locus_tag="ACJFD7_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009426 - bacterial-type flagellum basal
                     body, distal rod [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HGG0860215.1"
                     /translation="MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADL
                     MYQVMKYAGTSTSATTLSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNG
                     FFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSV
                     MLPGEQQETQIGQVELVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHG
                     FIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR"
     gene            complement(5975..7405)
                     /gene="glnA"
                     /locus_tag="ACJFD7_001425"
     CDS             complement(5975..7405)
                     /gene="glnA"
                     /locus_tag="ACJFD7_001425"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HGG0860216.1"
                     /translation="MGKFVNNIDDFFKFCKQNEVLFVDFRFTDMIGTWHHITYNLHAI
                     NEETFQTGIPFDGSSIHGWQPIEKSDMILKPDAQSAFLDPFTADPTIIVFCDVYDIYK
                     GQMYEKCPRSIAKKAMEHLKNSGIADTAYFGPENEFFVFDSVKIVDTAHCSKYEVDTE
                     EGEWNDDREFTDSYNTGHRPRNKGGYFPVQPIDSLVDIRSEMVQTLEKVGLKTFVHHH
                     EVAQGQAEIGVNFGTLVEAADNVQIYKYVVKMVAHLNGKTATFMPKPLYGDNGNGMHV
                     HMSLWKNGVNLFYDKDGYSGLSQTAINYIGGILKNARSVAAFTNPSSNSYKRIVPGFE
                     APCILTYSCQNRSASCRVPYGIGKNSARIEIRFPDSTANPYLAFVSLLMAGLDGIKNK
                     TIPVGPMDENLFDLTLDEIREKGIEQLPHTLRGSLEALIRHNSYLKPVMSDIFIDDYQ
                     HLKFETQVWPVEARPTAYEFKTCYSC"
BASE COUNT         2656 a         1009 c         1362 g         2382 t
ORIGIN      
        1 attgtaaaaa tcataaaatt taaagaacaa atattttttg gtaaaaattt tataattaaa
       61 ctccacttaa acacttctac gatacaatat ctagtttaaa tttaatcaag gaatgatatg
      121 cttacttgga tgcaacatca caaaaaatat cttgttgtta ctatatgggt tagtactata
      181 gcttttgttg gcgctggctt tttaggttgg ggtgcttatg attttaatct caatagaagt
      241 tcgagtgttg caactgtagg aaatgaaaag ataggtttta gtgaatttga tactagatat
      301 agacaaattt taagttatta taatcaaatt agcaatggtg ctttaactcc agaaaatgct
      361 gagcaactag gcattaaaaa tatagcttta agctctcttg ttgaagataa gcttttgtta
      421 aattttgcca aagatttggg tattggcgta aacgagaatg aaattttaca aaaacttgca
      481 aatactagag aatttcaaga tcctacaggg gattttaaca aaacaattta ttatgaactt
      541 ttaaatgcca ataatttaac tccaaaagat tatgaaacac aacttgcaaa tgaagtaatt
      601 accgataaac ttaatcaaat ttttaatatt cctagcaaag atgaggaatt aaaaatgtta
      661 gcttctagtt atttcatgca agatgcttta agtattgcaa aaattgatta tgacaaaaaa
      721 aatattaaga ttaacgaaga ggatttaaaa aagctttgga atgaacataa agaagattat
      781 aaaactaaaa aaatatatga aatttcaact tattttttgc cagttagcaa tgagaaaatt
      841 gacgacaaag aattagaaaa attttataat caagatgaaa ataaactaaa atataaagat
      901 tttgcaggta aagtgatgga ttttcagtct gctaaaaatg aagttgctaa agattacgcc
      961 ttaatgcaac taaagaatgt ggctaatact aaatttttag atttaaaaaa tgggaaagat
     1021 aattttcaaa aagatcaaaa tattagtgaa tctgatgttt attatccaat tgatcttttg
     1081 aataaagcta aaaatggaga tgttttacgg ccagcacctt ataataacgg atatatcata
     1141 gttaaactaa ataaagtaga tcctataaga aataaaactt ttgaagaagc tagagaagaa
     1201 gttttactta tgtatttaag cgaacaaact agaaaaaatt tagaagaaaa agctaaaaat
     1261 agtttagtaa attttaaagg cgatgatata ggctttgtaa gtcgagatag ttctcgcgag
     1321 agtgtaaagg ttagcgataa aatattaaac gattctgaat ttgcttattt tttaatgaat
     1381 gtatttaata ctgatcaaaa tagttcttat gtggtcatta atgacaataa agcaatatta
     1441 tataaaataa ataaacaaaa attagatatg aactccgata aatttgaaca atacaaaact
     1501 atgcttgaac aaaatttgca aaatttaaaa gcaaatgagc ttaagcaaga acttgttgat
     1561 gaacttaaaa agatatatcc gataaaaatt tattataaag ggaattgatt ttgaatatat
     1621 taggaattga cttaggctca acccagactt gtgccattat tgctcaaaaa gatgaagatg
     1681 gattaaaaat tattggtttt tccaagtcga aaaccaacgg ggttaaaaaa ggtgccatta
     1741 ccaatataga gcttgcttct aaatctattg aagaggctgt tagaagtgct gagatgatga
     1801 gcggagttca ttatgatagg gttgtggtgt ctatatcagg tgcttatact aaaagcgttg
     1861 atagcatagg tgttgttaat attccaaatc atgaaatagg cattaaagaa attcatcgtg
     1921 ctgtaagtac agctaagcat actgccaatc taccaagtgg ttatgaaatt atccatgttt
     1981 tgccttataa ttttaaggtt aatgatcttg aacatgttga tgatcctttg ggaatgagtg
     2041 gtaatcgttt agaagtttca acccatatag tgatttcaca agaatctcat attaaaaatc
     2101 ttaagaaagc agttgaatta gctgatttaa gagtggataa tatagttctt tcaggatatg
     2161 cttcagctat agcttgttta gatgatagcg aaaaggaatt aggtgctgtt ttgattgata
     2221 tgggtggagc gatttgtgat atggttgttc atactggaaa ttcaattaga tataatgatt
     2281 gtttgcaaat tggctcgatt aatatcactc aagatttatc aatggcattg catacacctt
     2341 taaaagaagc agaaaaaatc aagcttaatt atgcagctct ttcacaacag cctaataccc
     2401 ttatacaaat tccttcaatg ggtgatgaaa gaaaggttaa tgaagtttct ttggatatta
     2461 tttcaaacgt aatttatgca agagcggaag aaactttgat gattttggca aaaatcttaa
     2521 gtgataatcg ttatgccaat gctataggcg gtggagttgt tttaacaggt ggaatgacta
     2581 aattagcagg tattgatgag ctagctcctg caacatttga taatcgctca gttagactgg
     2641 ctactgcaag aaaagatttg attactggtt ttagtgaaat ttttaatgat cctgaaaata
     2701 cttgtgctat aggactttgt ttatatggag cgggatattt tacgccttat gaacttgatt
     2761 ctaatgaaaa attaagatat aaaggggaaa ttgaaaattt taatcgtcaa attaaacaag
     2821 atattgtttt gcaaaaagat acagaaagtg aaataaaatc tgattttttt gatgaaaatt
     2881 tgcaagaaaa tgatacaatt gcaatacaag aacaattaga ttttaaagag ccaaaagaaa
     2941 aaaaacctag tgttttttca aatatctggc ataaaattat gaatcaattt taacaaggag
     3001 aaatttttat gagtgaattt ttagtagaag aaatgcaaca taataaaggt gcaaaaatta
     3061 aggttatagg ctgcggtggc ggtggcggta atatgattaa ccatatggtt aaaatgggat
     3121 taaatgatct tgatttaatt gcagcgaata ctgatgcaca agctatttca atttcattag
     3181 caaaaactaa aattcaactt ggcgagaaaa aaactaaagg tttgggcgct ggtatgcttc
     3241 ctgaagtagg tgcagaaagt gctagagaaa gttttgaaga aataaaagca agtcttagtc
     3301 aaagtgatat tgtatttatt gcttcaggtt ttggtggagg tactggaacg ggtgccactc
     3361 cagttattgc acaagcagct aaagagattg gagctttaac tgtttctgtt gtaactatgc
     3421 cttttgcatt cgaaggaaaa caaagaaaaa aacttgctga aagcggtctc cttgagctta
     3481 aaaaagaaag tgattctatt cttgtaattc aaaatgaaaa attattgagc attattgata
     3541 aaaaagcagg cattaaagat gcttttaggt tggttgatga tattttagct cgtgctgtaa
     3601 aaggtatggt gtctatctta cttgataatg gagatattaa tgttgacttt gcggatgtaa
     3661 gaaccatcat gagtcatcgc ggactcgcgc ttatgggtgt tggtagtgct agcggtgaaa
     3721 atgctataga agaggctctt tcaaacgcta tagaatctcc tttgcttgat ggaatggata
     3781 ttaaaggtgc caagggagtt attttacatt ttaaaacaag ttctaattgc tctttgtttg
     3841 aaatttcggc agcagcaaat agtatacaag aaattgttga tgaaaatgct aagattattt
     3901 ttggttctac cacagatgat agcatggaag atagagttga agtaactatt attgcgacag
     3961 ggtttgaaga taaagataca gtagctaaaa aatctaccga agaagctcaa gcttctaaga
     4021 aaaatcctta tttaagtctt aaaaaggtaa gcggtggtta cgatgaagag ataatggcgc
     4081 aaattgaaac accaactttc ttgcgtcgtc aaatggatta aaattgattt ttaaagcaag
     4141 attgagtcaa atcttgcttt ttatagttta aaattctctc ctaataatct ttcaaatatt
     4201 tatttttctt tgtttttaaa agttggaaca ctctttgctt ttatagttat aaaatcttaa
     4261 atttataggt gaaaatatgc aaaatggata ttatcaagca actggcggaa tggtaactca
     4321 gtttaataaa cttgatgtga ttactaataa tcttgccaat atcaatacaa gtggatataa
     4381 aagagatgat gtggttattg cagattttaa aaggattttt aaagaaactc aggatgagtt
     4441 gcctatagaa aatcacacaa gagatgcatc tcgttttgta aatactacaa tagatggaat
     4501 cccacaagtt tctcaagaat atacggattt tagcctaggt tctttaaagg ccacaaacaa
     4561 tcctttggat ttggcaatga ctagagaaga tgctttttat ttggttcaga ccaaagatgg
     4621 agaagtaaga ttaaccaaag atggaaattt tcaacttgat gatgagggtt atttggtaaa
     4681 taagcaagga tacaaggtat taagtagtga ttattttaat aatcctcaga atgctggcat
     4741 acgcattcct aatagtgctg ttcaaattag cgttgataaa aacggaagca ttgaagttga
     4801 tggagctcaa aatgcaagat tatttgtagc acaagtagat gatataagag ctttgcaaaa
     4861 agatggggat aatgtctata aaatagatga tctaacccgt attagagatt tgaaaaactc
     4921 caatgctatt cgccaaggtt tttctcaggg atcaaatgtt aatccagtta ctgaaatggt
     4981 aggactgatt gaagcaaaca gaatggtaga aatgtatcaa aaagttatga cagctcatat
     5041 ggatgactta aatcaagaag ctatcaataa gcttgcagct gttaaataat ttaaaataaa
     5101 ataaaaaagg attcaagatg atgagatcac ttcatactgc tgctacagga atggtagcgc
     5161 agcaaacaca aattgatgtt acttcaaata acatcgccaa tgttaataca gcaggtttta
     5221 agaaaagtcg tgcagaattt gctgatctta tgtatcaagt tatgaagtat gcaggaactt
     5281 caacttcagc tactactctt tctccttcgg gtatagaagt gggtgtgggt gttcgtccaa
     5341 cagcggtaac taaagttttt actgaaggaa atttaaaatc aacaagtact gatggtcttg
     5401 atatggctat tgcaggtaat gggttttttc aaatacaact tcctgatggc actataggat
     5461 atactagaaa tgggcaattt acaaaagata atgaaggtaa tattgtaaat tcagatggct
     5521 atagactttt acctgaaatg acaatacctg aaggcgcaac agcaattaat gttgctacag
     5581 atggaaccgt ttctgtaatg ctaccagggg agcaacaaga aactcaaatt ggccaagtgg
     5641 agctagttca gtttataaat ccagcgggtc ttcattctat gggtgataat ctttatctcg
     5701 aaacaggagc aagtggtgca cctgttgcgg gtatagcagg acaagatggg cttggaacaa
     5761 taagacatgg atttatagaa cttagtaatg ttcagcttgt tgaagaaatg acagatctta
     5821 tcacaggaca aagagcttat gaagcgggtt ctaaggccat tacaacaagt gatgatatgc
     5881 taggaattgt aaatcagctt aagcgatagt tgatataaaa taaataattt ttaattcttt
     5941 tttgtttaat ggcgtgttaa acgccattaa atttttagca agagtagcaa gttttaaatt
     6001 cataagcagt tggacgagct tctactggcc aaacttgtgt ttcaaatttt aaatgctgat
     6061 agtcatcgat aaaaatatcg ctcattacag gttttaaata agaattatgt cggattaaag
     6121 cttctaaact tcctcttaga gtatgtggta attgctctat ccctttttca cgtatttcat
     6181 ccaaagtaag atcaaataaa ttttcatcca taggacccac aggaatggtt ttatttttga
     6241 ttccatcaag acctgccatt aaaagactaa caaaagctaa ataaggatta gcagtgctat
     6301 cagggaagcg aatttctata cgagctgaat ttttacctat gccataagga acgcgacaac
     6361 ttgctgatct gttttgacaa gaataagtta aaatacaagg agcttcaaag ccaggaacta
     6421 ttcttttgta agagttggaa cttggatttg taaaagctgc aacacttcta gcatttttta
     6481 aaattccacc tatataattt atagcagttt gactaagtcc actgtatcca tctttatcgt
     6541 aaaataaatt tactccattt ttccataagc tcatatgaac atgcatacca ttgccattat
     6601 ctccgtataa aggttttggc ataaaagtgg cagttttgcc atttaaatga gctaccattt
     6661 ttacaacata tttataaatt tgaacattgt cagctgcttc tacaagcgtg ccaaaattta
     6721 ctcctatttc agcttgtcct tgtgcaactt catgatgatg aacaaaagtt ttaagaccta
     6781 ctttttcaag ggtttgaacc atttcagaac gaatatctac taaagaatca attggctgaa
     6841 ctggaaaata tccacctttg tttcttggcc tgtgtccagt attgtagcta tcggtaaatt
     6901 ctctatcatc attccactct ccttcttcgg tatcaacttc atacttagaa caatgagcag
     6961 tatcaactat ttttacacta tcaaaaacaa agaattcatt ttctggtcca aagtaagcag
     7021 tatcagctat gccactattt ttaaggtgtt ccattgcttt ttttgctatg cttcttggac
     7081 atttttcata catttgtcct ttgtaaatat catacacatc acaaaatact atgatagtag
     7141 gatcagccgt aaaaggatct aaaaaagcac tttgagcatc aggttttaaa atcatatctg
     7201 atttttctat aggttgccat ccatgaattg agcttccatc aaatggaatg ccagtttgaa
     7261 atgtttcttc attgattgca tgaagattat aggtaatatg atgccaagtt cctatcatat
     7321 ctgtaaaacg aaaatcaaca aaaagcactt cattttgttt gcaaaatttg aaaaaatcat
     7381 ctatattatt aacaaatttt cccatattt
//
LOCUS       DBBXPZ010000076         7389 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.078, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000076 DBBXPZ010000000
VERSION     DBBXPZ010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7389)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7389)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7389
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.078"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..587)
                     /locus_tag="ACJFD7_001426"
     CDS             complement(<1..587)
                     /locus_tag="ACJFD7_001426"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860217.1"
                     /translation="MNQENINELKNLKQQFFLIMDFLKKYLGVISTSIIFVSFALGAW
                     ILTEYYIFNAHFIPDFNKDLIFSNIFSIAWIGFIFVSFFLILYLTPLILFNHFLKNTH
                     AKFKTIGFCFLTPIALANILLIFLFYKFLNAMLGSIIIFIAIPLLSSLLFYIKFKNQA
                     YNKKEFLANAIEFFLTSFTYIYGFFSIYQFLSTNI"
     gene            complement(697..1482)
                     /locus_tag="ACJFD7_001427"
     CDS             complement(697..1482)
                     /locus_tag="ACJFD7_001427"
                     /inference="COORDINATES: protein motif:HMM:NF012993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HGG0860218.1"
                     /translation="MKIALAQIKTSPKWQENLEKILKLLNETKKQEAHLVVFPETCMA
                     FVPSDGSVNFQDIAQDIQDEFVQTILKESEKLKLAVVFGFFEKGAIKVKNCVLFVNSE
                     KILHKYHKTHLYNAFSYNESKDIEEGQNPIKAFDTPWGKMGMMVCYELRFPEIARSLA
                     LQGAKLILVPTAWVDGKLKKEHFSLLSRARALENTVFLCACSQTKNIYTGESALISPL
                     GIELIKMGEEEALAFVQINLEEIAQLRKTLPCLEQRRKELYEL"
     gene            complement(1489..1800)
                     /locus_tag="ACJFD7_001428"
     CDS             complement(1489..1800)
                     /locus_tag="ACJFD7_001428"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HGG0860219.1"
                     /translation="MQAWASFAEGHNNLFNNITLQQIGAKHGKSVAQVVLRWLIEREI
                     AVIPKTLSKDRMKQNFNVFDFSLDTQDKEKIASLASNAYQISNHHDTERVSFLSRLNK
                     Y"
     gene            complement(1840..2352)
                     /locus_tag="ACJFD7_001429"
                     /pseudo
     CDS             complement(1840..2352)
                     /locus_tag="ACJFD7_001429"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
     gene            complement(2408..2989)
                     /locus_tag="ACJFD7_001430"
     CDS             complement(2408..2989)
                     /locus_tag="ACJFD7_001430"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008753 - NADPH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HGG0860220.1"
                     /translation="MKNILLLNGAKEFGNSKGQLNLTLHNHALEILKTLGYEVDQTHI
                     DQGYDPKEEMQKFIKADAVIYQMPAWWMGEPWIVKKYIDEVFGLGAGVLFKNDGRTHE
                     NPSKNYGKGGLDHGKKCMFSLTWNAPLEAFNDKNEFFEGKGVDMVYWHLHKAHEFIGM
                     KALPTFMCNDVVKNPQVEKYLNEYELHLKKIFA"
     gene            3089..3436
                     /locus_tag="ACJFD7_001431"
     CDS             3089..3436
                     /locus_tag="ACJFD7_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HGG0860221.1"
                     /translation="MTKENSPCNFEECGFNYTLALINRKYKMSILYCLFRYEIVRYNE
                     LKRFLSSISFKTLTNTLRELENDGLIIRKEYAQIPPKVEYSLSKRGQSLIPILQAMSK
                     WGKKDKKGKKCLN"
     gene            3424..3873
                     /locus_tag="ACJFD7_001432"
     CDS             3424..3873
                     /locus_tag="ACJFD7_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HGG0860222.1"
                     /translation="MLELIGELSLQNYMGEWLEIARKPAFFQKSCLNSKAKYELKYKN
                     GIPYVEIENFCSKKNEISSIKGKAKIVSNRQLAVRFNIFMNLFNKVNYEIIFVDSEYK
                     VAIVGSPDKKYLWILARNIIDEKNIKELLNIAKQRGFDISDVVFDKY"
     gene            complement(3875..4951)
                     /locus_tag="ACJFD7_001433"
     CDS             complement(3875..4951)
                     /locus_tag="ACJFD7_001433"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HGG0860223.1"
                     /translation="MQYKILENNRIASKGYAMLSKDAKFTPFEFSRHAIGDNDILIKI
                     LYAGICHSDIHTARSEWGEATYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVNS
                     CGECDACKRSQEQFCENGKTIFTYNSCDVFHGNENTYGGYSNNIVVSEKFAICVPKNA
                     PMDKVAPLLCAGITTYSPLRFSKIKEGSSVAIAGFGGLGMMAVKYAVKMGAKVSVFAR
                     NENKKADALAMGVSSFYASCDKNAVKERFDLIISTIPTPYNPAVYLDLLKFGGEMAIV
                     GLPPVEDKVNIGINELVHKAGKKVYGSLIGGIAETQEMLDFSLKHEIYPETELITPQE
                     IDKAYENLTSGKAKFRYVIDMTKE"
     gene            5082..>7389
                     /gene="hsdR"
                     /locus_tag="ACJFD7_001434"
     CDS             5082..>7389
                     /gene="hsdR"
                     /locus_tag="ACJFD7_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0015666 - restriction
                     endodeoxyribonuclease activity [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EcoAI/FtnUII family type I restriction enzme
                     subunit R"
                     /protein_id="HGG0860224.1"
                     /translation="MQNLYSEDDTRVKFIDAKLYDSSWNEENIQRNYYFTDGRKLLGG
                     KRAQRKFADYLLRYEGNNLAIIEAKKFSKDPLDGLSQGIEYAKILNVPFVYSSNGEKI
                     YEYDIRNHSGKYIDKFPSPKELFDRIYGNVKEWQYRLLTQNVMYIPQKELRYYQKIAI
                     DKVIEAIINNKNRILLTLATGTGKTTIAFNLCYRLLEARWNKENKDQKPKILFLCDRV
                     SLRDQALGEFNPIESDCKAISAEEIKKNDGKIITNANIFFGIYQSLAANSKEQENIQE
                     EQESKFYLQYPKDFFDLIIIDECHRGGANEEGSWRAVLEYFSYATQLGLTATPKKEEN
                     IDTYEYFGESVYDYSLKSGIEDGFLTPYKVKLIKTTLSDGYTYNPDDLIQGELEKGFY
                     KQSEFERNIFLPNYNDFIAKKILELINPMDKTIIFCVNQAHANEVKRAIDKYKSVKRD
                     DYCVRVTSDEGKIGLDYLKLFQDNDKSYPVILTSSKMLTTGVDAKNVRNIVLLANIGS
                     MVEFKQIIGRGTRVYEGKDFFTILDFVGATKLFYDPKWDGEKIEELKEQDEKEKITKE
                     HIKQTKEENKEKKSVTIHLKGTKLKILDITTTYVGAQGKPLSTKEFLEFLIGKLGEYY
                     DDEAKLREIWSDQKNRERFLKALANDGVDEDALKDLREIFQKDCDIYDVLAHLSFNAE
                     IKTRQERVLQVENGEFLKRFQKEKAIKFIEFLLNRYQEYGIKDFDDGLKPLIELSSLG
                     NVRELADEFGSLEILKQSFDDLQREIYAI"
BASE COUNT         2646 a         1121 c         1185 g         2437 t
ORIGIN      
        1 atgatatttg tacttaaaaa ttgatagatt gaaaaaaatc cataaatata tgtaaatgaa
       61 gttagaaaaa attctatagc attagctaaa aattcttttt tattgtaagc ttggttttta
      121 aattttatat aaaaaagtaa ggatgaaagt agaggtattg caataaaaat tataatgctt
      181 cctaacatag cattaaggaa tttgtaaaat agaaatatta ataaaatatt ggctaaggct
      241 attggagtta agaaacaaaa gcctattgtt ttaaatttag catgggtatt ttttaaaaaa
      301 tgattaaaaa gtattaaagg agtgagatac aaaataagaa aaaatgaaac aaatataaat
      361 ccaatccatg ctattgaaaa aatattagaa aaaatcaaat ccttgttgaa atcaggaata
      421 aaatgggcat tgaaaatata atactcagtt aaaatccaag ctcccaaagc aaaacttaca
      481 aaaataatac tagtgcttat cacccctaaa tattttttta aaaagtccat tatcaaaaaa
      541 aattgttgct taaggttttt taattcattg atgttttctt gattcataat ctgccttata
      601 aaaaatgatt ttacacaaaa atactttttc aatcctttaa aaaatgcttt aatattaaaa
      661 attttaaaag attttcaagg ctaaaaagcc ttgagtttat aattcataaa gttctttgcg
      721 tctttgctct aagcaaggca aagtttttct tagttgagcg atttcttcta aattaatttg
      781 aacaaaggct agagcttctt cttcacccat tttgataagt tctatgccca aaggacttat
      841 gagtgctgat tctcctgtgt agatattttt tgtttgagaa caagcgcata agaatacagt
      901 attttccaaa gctctagcgc gagaaagtaa agaaaaatgc tcttttttaa gctttccatc
      961 tacccaagct gtaggcacta agatgagttt tgcaccttgt aaggctaagc ttctagcgat
     1021 ttctggaaaa cgtagctcat aacaaaccat catgcccatt ttaccccaag gcgtatcaaa
     1081 agctttgatg ggattttgtc cttcttctat atccttgctt tcattataag aaaaggcatt
     1141 gtaaagatgg gttttatgat atttgtgaag aattttttct gaattgacaa aaagcacaca
     1201 atttttaacc ttgattgcgc ctttttcaaa aaaaccaaaa accacagcaa gttttaattt
     1261 ttcactctct tttagtatgg tttgaacgaa ttcatcttgt atatcttgag ctatatcttg
     1321 aaaattcaca ctcccatcac ttggcacaaa ggccatgcaa gtttctggaa aaactaccaa
     1381 atgagcctct tgttttttgg tctcatttaa aagttttaaa attttttcta aattttcttg
     1441 ccatttaggg cttgttttaa tttgtgctag tgcgattttc atcatatctt aatatttgtt
     1501 taatcttgat aaaaagctta ctctttcagt atcatgatgg tttgaaattt gatacgcatt
     1561 tgaagctaaa gaagcgattt tttctttatc ttgcgtgtct aaactaaaat caaaaacatt
     1621 aaaattttgt ttcattctgt ctttacttag agtttttggt atcacggcga tttctctttc
     1681 tatgagccat ctaagaacga cttgagctac gctttttcca tgctttgcac caatttgctg
     1741 caaagtgata ttattaaaaa gattattatg cccttcagca aaagaagccc aagcttgcat
     1801 gataatacct agcttattca tagtattttg agccgagttt tattgatgaa aagggtggca
     1861 ttctacttga tttaacatgg gtttgatttc attgtgtaag caaaaatcaa caagacgatc
     1921 agggtaaaaa ttgctcacac ctatggcttt actaagtcct tctttataaa tttcactcat
     1981 cacacgctat gctccataag tatcattaaa aggttggtgt atgagataaa gatcaatata
     2041 atcaagccct aattttttaa ggctttcttc aaaggccttt tttgctagct tttcgtttgt
     2101 tttatccacc caaagtttag tggtgataaa aagttcttcg cgttttatcc cgcttgcttt
     2161 gattgcagat cctacggcct cttcattatt ataaattgaa gctgtgtcga taagacgata
     2221 tccaacgctt aaagcatctt ctacgcaagc ttgggttttt ttaggatcga tttgaaatac
     2281 tccataaccc aaaataggca ttttattacc atttgctaaa gttaaatatt gcatattatc
     2341 tcctttaatc ataattgttt atattatact atgcaaggct aataaatttt aaaaagttca
     2401 ttatttctca agcaaaaatt tttttcaagt gtagttcata ctcgtttaga tatttttcca
     2461 cttgaggatt ttttaccaca tcattacaca taaaagttgg taaagctttc atacctataa
     2521 attcatgagc cttatgcaaa tgccaataca ccatatctac accctttcct tcaaaaaatt
     2581 catttttatc attaaaggct tcaagaggtg cattccaagt gagagaaaac atgcattttt
     2641 taccatgatc taaaccacct tttccgtagt ttttactagg attttcatga gttcttccat
     2701 catttttaaa aagcactcca gcacccaaac caaacacttc atcgatatat tttttaacta
     2761 tccaaggctc ccccatccac caagctggca tttgatagat cacagcatca gcttttataa
     2821 atttttgcat ctcttcttta ggatcatatc cttgatctat gtgagtttga tctacctcgt
     2881 atcctagtgt ttttaaaatt tctaaagcat gattatgcaa tgtcaaatta agttgtcctt
     2941 ttgaatttcc aaattcttta gcaccattaa gcaagagtat atttttcatt tttatccttt
     3001 tttaaatttt atgatacaat tataacttag cataatatca ttttcaatac agaaaataaa
     3061 gtaatatact atactaaagg aatgttaaat gactaaagag aattctccgt gcaatttcga
     3121 agaatgtgga tttaactata ctctagcatt aattaataga aaatataaaa tgagtatttt
     3181 atactgctta tttcgctatg aaatcgtgcg ttataatgaa ctcaaacgct ttttaagctc
     3241 catatctttt aaaactttaa ccaatacctt aagagaacta gaaaacgatg gtttaattat
     3301 cagaaaagaa tacgctcaaa ttccacccaa ggtagaatat agcttatcca aacgtggaca
     3361 aagtttaatt cccattttac aagctatgag caaatggggc aagaaagaca aaaaagggaa
     3421 aaaatgcttg aattaattgg cgaactttct ttgcaaaatt atatgggaga atggcttgaa
     3481 atagctagaa aaccggcctt ttttcaaaaa tcttgcctaa attcaaaggc aaaatacgag
     3541 cttaaataca aaaatggcat tccttatgta gaaattgaga atttttgcag taaaaaaaat
     3601 gaaatttcaa gtataaaggg taaggcaaaa atcgtttcaa ataggcaatt agcagtgaga
     3661 tttaacatct ttatgaacct ttttaataaa gtaaattatg aaatcatttt tgttgatagc
     3721 gagtataaag ttgccattgt gggtagtcct gataaaaaat atctttggat tttagcaaga
     3781 aatataatag atgaaaaaaa tataaaagag cttttaaaca tcgctaagca aaggggattt
     3841 gacattagcg atgtggtttt tgataagtat taaattattc ttttgtcata tcaatgacat
     3901 agcgaaattt agcctttcct gaggttagat tttcataagc tttatcgatt tcttgtgggg
     3961 tgataagctc ggtttctgga taaatttcat gttttaaaga aaaatcaagc atttcttgag
     4021 tttcagcaat accaccaatt aacgagccat aaaccttttt acctgcctta tgtacaagct
     4081 cgtttatacc tatatttacc ttatcttcca caggaggtaa gccaactata gccatttcgc
     4141 caccaaattt aagtaaatcc aaataaacag caggattata aggcgttgga atggttgaga
     4201 tgattaaatc aaaacgttct tttacggcgt ttttatcgca gcttgcgtaa aatgagctta
     4261 cacccatagc caaagcatcg gcttttttgt tttcatttct agcaaaaacg ctaacctttg
     4321 cacccatttt aacagcgtat tttacagcca tcataccaag tccgccaaag cctgctatag
     4381 caacgcttga accttctttt atcttagaaa atcttaaagg cgagtaagtg gtaatgcccg
     4441 cacaaagcaa aggcgcaacc ttatccatcg gtgcattttt tggcacacaa atggcaaatt
     4501 tttcacttac aactatgttg tttgagtagc ccccataagt gttttcattg ccatgaaata
     4561 catcacaact attgtaagta aagatggttt tgccattttc gcaaaactgc tcttgtgagc
     4621 gtttgcaagc atcgcactca ccgcatgaat ttaccataca accaacccct gcgtaatctc
     4681 ctactttaaa tttactcaca tttttaccca cagcgataac ttctcctgct atctcatgcc
     4741 caggcacgca aggataagta gcttctcccc actcgcttct tgcggtgtga atatcgctat
     4801 gacaaatgcc tgcatatagg attttaatca aaatatcatt atcgccaata gcatggcggc
     4861 taaattcaaa gggtgtaaat ttcgcatcct tgctaagcat tgcatagcct ttacttgcga
     4921 tgcgattgtt ttctaaaatt ttgtattgca tttttgctcc ttttttgatt tttttataat
     4981 tataaaacat tagagtagct ataagtcaag agtgaaaata attttttaaa aattagtata
     5041 aatgctataa ttataaaatt taatttcact ttggggtaaa aatgcaaaat ttgtattcag
     5101 aagatgatac tagagtaaaa tttatagatg caaagcttta tgatagctct tggaatgaag
     5161 aaaatataca aagaaattat tattttacag atggtagaaa gcttttaggt ggtaaaagag
     5221 cacaaagaaa atttgcagat tatttgctta gatatgaagg aaacaacctt gctataatag
     5281 aagctaaaaa atttagtaaa gatcctttag atggtttatc tcaaggcata gaatatgcaa
     5341 aaattttaaa tgtgcctttt gtatatagta gcaatggaga aaaaatttat gaatacgata
     5401 taagaaatca tagtggtaaa tatatagata aattcccaag tcctaaagag ctttttgata
     5461 ggatttatgg caatgtcaaa gaatggcaat acaggctttt aacccaaaat gttatgtata
     5521 taccgcaaaa agaattaaga tattatcaaa aaatagcaat agataaagtc atagaagcca
     5581 ttataaataa caaaaataga attttactca ctcttgctac aggcacagga aaaacaacca
     5641 tagcttttaa tttgtgctat cgtttgttag aggcaagatg gaataaagaa aacaaagatc
     5701 aaaagcctaa aatactattt ttatgtgata gagtgagctt aagagatcaa gccttaggag
     5761 aatttaatcc tatagaaagt gattgtaagg caattagtgc tgaagaaata aagaaaaatg
     5821 atggaaaaat cataacaaat gcaaatattt tctttggaat ttatcaaagc ttagccgcaa
     5881 attcaaaaga acaagaaaac atccaagaag aacaagagag caaattttat cttcaatacc
     5941 caaaagattt ttttgatctt atcatcatag atgagtgcca cagaggtgga gcaaacgaag
     6001 aaggaagctg gagagctgtg cttgagtatt tttcttatgc gactcagctt ggtttaaccg
     6061 ctactccaaa aaaagaagaa aatatagaca cttatgagta ttttggtgag agtgtttatg
     6121 attatagtct taaaagtggt attgaagatg gatttttaac cccttataaa gtcaaactca
     6181 taaaaacaac tttgagtgat ggttatactt acaatcctga tgatttgata caaggtgagc
     6241 ttgaaaaagg cttttataaa caaagtgagt ttgaaagaaa tatcttttta ccaaactata
     6301 atgactttat cgctaagaaa attttagagc ttataaatcc tatggataaa accataattt
     6361 tttgtgtaaa tcaagctcat gcaaatgaag taaaaagagc tatagataaa tataaaagtg
     6421 ttaaaagaga tgattattgt gtaagagtta cgagtgatga aggtaaaata gggcttgatt
     6481 atctaaaatt gtttcaagat aatgataaaa gctatcctgt catacttact agctctaaaa
     6541 tgctcacaac tggagtggat gcaaaaaatg tgcgaaatat agtattgcta gcaaatatag
     6601 gttctatggt tgaatttaag caaattatcg ggcgtggcac tagggtttat gaaggtaaag
     6661 acttttttac tatacttgat tttgtcggtg cgactaaact tttttatgat ccaaaatggg
     6721 atggtgaaaa aatagaagaa ttaaaagagc aagatgaaaa agaaaaaatc actaaagagc
     6781 atataaaaca aacaaaagaa gaaaacaaag aaaaaaagag cgtaaccata cacttaaaag
     6841 gcacaaaact taagatttta gatatcacaa ctacttatgt aggagcacaa ggtaagccac
     6901 ttagcactaa agaattttta gaatttttga taggaaagct tggtgagtat tatgatgatg
     6961 aagcaaaatt gcgtgaaatt tggagtgatc aaaaaaatag agaaagattt ttaaaagccc
     7021 ttgcaaatga tggagtagat gaagatgctt taaaagatct aagagaaatt tttcaaaaag
     7081 attgtgatat atacgatgtt ttagcgcatt taagctttaa tgccgagata aaaacaaggc
     7141 aagagcgtgt tttacaagta gaaaatggtg agtttttgaa acgctttcaa aaagaaaaag
     7201 ctataaaatt tatagaattt ttactaaata gatatcaaga atacggcata aaagattttg
     7261 atgatggttt aaaaccactt atagagctta gttctttagg caatgtaaga gaattggctg
     7321 atgaatttgg tagcttagaa attctaaaac aaagttttga tgatttacaa agggagattt
     7381 atgctatat
//
LOCUS       DBBXPZ010000077         7316 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.079, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000077 DBBXPZ010000000
VERSION     DBBXPZ010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7316
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.079"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            3..3701
                     /locus_tag="ACJFD7_001435"
     CDS             3..3701
                     /locus_tag="ACJFD7_001435"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HGG0860225.1"
                     /translation="MYNVEKYLRECLDSVVNQTYKNLQVVLVNDGSTDENSLNIAKEY
                     TLKDERFILFDKENGGQSTARNVGIEYFSGDFCFNIINEELQVDKHQLVEFSIKNNNS
                     RAIRKIYKSSNYFANKKEAINFKNPNIDFIVFLDPDDYWTLDCIEECIKRSDNMDIVW
                     FDYQMFYDNIEEKHYKHKTNLTKSQMQIYEYYKPEKITSMQWLERCLKIQADLPFWCV
                     CGGIYSFAYLQKIKLKFLDGLIHEDVHFGMLLFAQAKHIYVFPKVLYYYRIRSASTAS
                     YDKITTKANITPYIEHLCDVFDGDVKAAKEYHAKSSIFLNAWHIREFIAKEYDKEKGK
                     LLEEAFFMFLYFWYFDFVELKHDPRRIKELFREHKPIYECNHKRYPEFDFFCKYGLVR
                     YRIQKQLSYRIGYVLTRVKIYNFYLIPFRLILEFIKFKMEKNKKKLPKLDEYPDFNDV
                     NRVKNHLSYLIGEALIKSIKQWYLGKPLILPFAWYAIYKKKKTKKPDYKKQVAHKPYF
                     ILPDHTLLNISKYKKAMQSSLSIYSKFNDASRAINTDIICDYAFCTSKDRWSWWIVDL
                     FDTYFLEKIRILNVKNTFLRSSMRDIKIYVSIDNTQWTLIPQNFYIWKYNNFECDVVI
                     SNRVEARYIKILLERKVLSLSKVEVFKKRKKGYIISSKPDGLGMRIASILVGMYLAKK
                     MNFEFGFLWHNSIDLAFMGITQSCKDEKLNYLGNCMDEVDIVFGESFIEQYFLPSEGL
                     EYSHGNAIRKDKRTFEYLTDQENFEKEWGWYSTDILPNLWIEDCKESECLHEIQQIYT
                     TINFSKQYQDILIKVQDDIAKLQAKFIALHIRGGDIIFSNIRKAPSFTPVIERLFPYE
                     IALEIAIKELDKNNNIVVFGQDLNANKELVDYLKSFKQYNHLKILDISSFIDPNYTEM
                     QRAFFEINFMSKAEKIYSAKESVFSKLAMMISGSNKLISFHDIFSKDEQLKLIIQNMN
                     KLSLHFLQKAMSSFRLFQLSRELNLPLENQIKYLDEALKLDNDNDGYRIYKMQCLFMQ
                     QDYNQINENIKIILENRYESFFQTLLSHSLGAFNDCYQDYINFNDEKYPYIFIVGFKI
                     SSFLGDLKRAQYLKLILLKNKNNTEKDLLLRYLTNDCFSAVGYVKSDIRYQLGNALIK
                     MEIIKTFQILYREKKQNKLLREHPIGNLDLKSCSDYYESLECKKHLSYQLGDLILKAH
                     QNRYKGAYFILPYKIYMLYKNFKYKKGK"
     gene            3701..4246
                     /locus_tag="ACJFD7_001436"
     CDS             3701..4246
                     /locus_tag="ACJFD7_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HGG0860226.1"
                     /translation="MAIEFDIQESKILKGVYIITPNKFRDLRGEIWTAFTSEAIDKLL
                     PNGLKFIHDKFIHSKHNVIRGIHGDVKTYKLATCVYGEVHQVVVDCRKDSPTYLKHER
                     FIINQDNQQIILVPAGFGNAHYVSSESAVYYYKCAYLGEYMDAHDQFTYAWNDERIGI
                     DWPTNSPILSERDILAMSKDK"
     gene            4246..5286
                     /locus_tag="ACJFD7_001437"
     CDS             4246..5286
                     /locus_tag="ACJFD7_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002923011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HGG0860227.1"
                     /translation="MQKDSKIYIAGHGGTLGKTLYNTLIDEGFNNIIVKTRKELDLVD
                     QKAVTDFFAKEKPEYVFLCAAKLDTLGLFTPADVIYENSVLQANIIHSSYQNNVKKLI
                     FYGSAWAYPQKAINPIKEENLLDGKLDLKAVAYGLPKIIGTKMCESYNLQYGTNFITL
                     YLANLYGETTEFDLQKAKVLPALLRKFHLAKLLDENKIDEVLKDLQMNFFEQAMEYLQ
                     KFGVSKDSVEIWGSGSVIREFIHAKDLVNASIYVMKNIDFKDIVSSNEPHLNVGSGEF
                     LSIKELACLIKNIVGFKGEIMFNNSKPDSTMDRMLDSSRLQNLGWKAKIKLEDGIKMM
                     YEWYLKEQNIRQ"
     gene            5295..6329
                     /locus_tag="ACJFD7_001438"
     CDS             5295..6329
                     /locus_tag="ACJFD7_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HGG0860228.1"
                     /translation="MKKTALITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIY
                     HLSDRINKKDRISIFYADLNDYSSLQKLFESQRPDVIFHLAAQSYPKTSFDIPIETLQ
                     TNIIGTANILENIRILKAKDGYDPVVHICSSSEVYGKAKTGVKLNEETAFHGASPYSI
                     SKIGTDYLGRFYGEAYNIRTFVTRMGTHSGPRRSDVFFESTVAKQIALIEAGYQEPVI
                     KVGNLSSVRTFQDCRDAIRAYYLLSLESQKGNIPCGEAFNIAGEEAFKLPEVIDILLN
                     FSDMGGGIEVRQVEDRMRPIDADYQMFDNSKIKSFIDWKAEIPVRQMLKDLLNHWRNE
                     IKRGRIPLNR"
     gene            6353..7291
                     /locus_tag="ACJFD7_001439"
     CDS             6353..7291
                     /locus_tag="ACJFD7_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HGG0860229.1"
                     /translation="MSKKVLITGGAGYIGSVLTPILLEKGYEVCVIDNLMFDQISLLS
                     CSHNKNFTFINGDAMDENLIKQEVAKADIIIPLAALVGAPLCKRNPKLAKMINYEAVK
                     MISDFASPSQIFIYPNTNSGYGIGEKDAMCTEESPLRPISEYGIDKVHAEQYLLDKGN
                     CVTFRLATVFGISPRMRLDLLVNDFTYRAYKDKFIVLFEEHFRRNYIHVRDVVKGFIH
                     GIENYDKMKGQAYNMGLSSANLTKRQLAETIKKYIPDFYIHSASIGEDPDKRDYLVSN
                     AKLEATGWKPDNTLEDGIEELLRAFKMMKVNRFANV"
BASE COUNT         2692 a          852 c         1269 g         2503 t
ORIGIN      
        1 caatctataa tgtagaaaaa tatttaagag aatgtttaga tagtgttgtc aatcaaactt
       61 ataaaaattt acaagttgta cttgtaaatg atggaagtac tgatgaaaac tcactcaata
      121 ttgcaaaaga atatacttta aaagatgaaa gatttatact ttttgataag gagaatggtg
      181 gacaaagtac cgcaagaaat gtaggtatag aatatttttc tggtgatttt tgttttaata
      241 tcattaacga agaactgcaa gttgacaagc atcagttggt agaattttct ataaaaaata
      301 ataattctcg tgctattcgc aaaatttaca aaagttctaa ttattttgca aataagaaag
      361 aagcgatcaa ttttaaaaat ccaaacattg attttattgt atttttagat cctgatgatt
      421 attggacatt agattgcatt gaagaatgta ttaaaagatc agataatatg gatatagttt
      481 ggtttgacta tcagatgttt tatgataata ttgaagaaaa acattataaa cataaaacaa
      541 atttaacaaa atctcaaatg caaatttatg aatattataa accagagaaa attacatcca
      601 tgcaatggct tgagagatgt ttaaaaattc aagccgacct tcctttttgg tgtgtgtgtg
      661 ggggtatata ttcttttgct tatttgcaga aaataaaatt aaaattttta gatggcttaa
      721 ttcatgagga tgtacatttt gggatgttgc tttttgctca agctaagcat atatatgtat
      781 ttccaaaagt tttatattat tatcgtatac gttcagcttc tactgcttct tatgataaaa
      841 taactactaa ggctaatatt accccctata ttgaacattt gtgtgatgtt tttgatggtg
      901 atgttaaagc agctaaagaa tatcatgcaa aaagcagtat ttttttaaat gcttggcata
      961 ttagggaatt tattgccaag gagtatgata aagaaaaagg gaaattgcta gaagaggcgt
     1021 tttttatgtt tttatatttt tggtattttg attttgtgga gttaaaacat gatcctagaa
     1081 gaatcaaaga gctttttaga gagcataagc ccatttacga atgcaatcat aaacgctatc
     1141 ccgaatttga ctttttttgt aaatatggtt tagtaagata tagaatccaa aaacaacttt
     1201 cttatagaat aggttatgtt cttactcgtg ttaaaattta taatttttat ttaattcctt
     1261 ttagattaat tttagaattt attaaattta aaatggaaaa aaataaaaaa aagctaccta
     1321 aattagatga atatcctgat tttaatgatg tgaatcgggt taaaaatcat ctttcttatc
     1381 ttattggcga agctttaatt aagtctataa aacaatggta tttaggcaaa cctttgattt
     1441 taccttttgc ttggtatgcg atatacaaaa aaaagaaaac aaagaagccc gactataaaa
     1501 aacaagttgc tcataaacct tattttattc ttcctgatca tactttgctt aatatttcta
     1561 aatataaaaa agctatgcaa agttctttaa gtatttattc caaatttaat gatgcttcta
     1621 gagctataaa cactgatata atttgtgatt atgctttttg cacttctaaa gatcgatggt
     1681 cttggtggat tgttgattta tttgatactt attttttgga gaaaattagg attttaaatg
     1741 ttaagaatac ttttttaaga tctagtatgc gtgatatcaa aatttatgtt tcaatcgata
     1801 atacacaatg gacacttatt cctcaaaatt tttatatatg gaaatataat aattttgaat
     1861 gtgatgttgt tatatctaat agagttgaag caagatatat aaaaatactt ttagaaagaa
     1921 aggttcttag tttgagtaaa gttgaagtat ttaaaaaaag aaaaaaaggt tatattatat
     1981 cttctaaacc agatggatta ggtatgagaa tagctagcat tttagtaggt atgtatttag
     2041 ctaaaaaaat gaatttcgaa ttcggatttt tgtggcataa ctctatagat ttggctttca
     2101 tggggattac acaatcttgc aaagatgaaa aattgaatta cttaggcaat tgtatggatg
     2161 aggttgatat tgtatttggt gaaagtttta ttgagcaata ttttttacca tcagaaggac
     2221 tagaatatag ccatggtaat gctataagaa aagataaaag aacttttgag tatctgacag
     2281 atcaagaaaa ttttgaaaag gaatgggggt ggtattctac agatattttg ccaaacttat
     2341 ggatcgaaga ttgtaaagag agtgagtgct tacatgaaat acaacagatt tatactacaa
     2401 ttaatttttc aaaacaatat caagatattt taattaaggt tcaagatgat attgcgaaat
     2461 tacaagctaa atttattgct ttgcatatta gaggcgggga tattattttt tcaaacataa
     2521 gaaaagctcc tagttttact cctgttatag aaaggctttt tccttatgag attgctttag
     2581 agattgctat aaaagaattg gataaaaata ataatattgt agtctttggg caagatttaa
     2641 atgctaataa agaattggtt gattatctaa agtcttttaa acaatataat catttaaaaa
     2701 ttcttgatat cagttcattt atagatccta attatactga aatgcaaaga gccttttttg
     2761 aaattaattt tatgtccaaa gccgaaaaaa tttattcagc caaagaatca gttttctcaa
     2821 aattagcaat gatgatttct ggaagcaata agttaatatc ttttcatgat attttttcaa
     2881 aagatgagca attgaaattg ataattcaaa atatgaataa attgtcttta cattttttgc
     2941 aaaaagctat gtcttcattt cgattatttc aactttcaag agaattaaat ttgccattag
     3001 aaaatcaaat taaatatctt gatgaggctt taaaattaga caatgataat gatggatata
     3061 gaatttataa aatgcaatgt ttatttatgc aacaagatta taatcagatt aatgaaaata
     3121 ttaaaataat tttggaaaac cgttatgagt ctttttttca aaccttatta tcacattctt
     3181 taggagcttt taatgactgt tatcaagatt atattaattt caatgatgaa aaatatccat
     3241 atatttttat cgtaggattt aaaatttcta gttttttagg cgacctcaaa agggctcaat
     3301 atttaaaatt gatcttgcta aaaaataaaa acaatactga aaaagactta ttattgagat
     3361 atttaactaa tgattgtttt agtgctgtag gctatgttaa atcagatatc agatatcaat
     3421 tagggaatgc tttgattaaa atggaaatta taaaaacatt tcagatttta tatagagaaa
     3481 aaaaacaaaa taaacttctt agagaacatc ctattggaaa tttagactta aaatcttgct
     3541 cagattatta tgaatctcta gaatgtaaaa aacatctttc ttatcaatta ggagatttga
     3601 tacttaaagc tcatcaaaac agatataaag gagcttattt tattttgcct tataaaatat
     3661 acatgcttta taagaatttt aaatacaaaa aaggaaaata atggcaatag aatttgatat
     3721 acaagaatca aaaattttaa aaggagtgta tattataact cctaacaaat ttagagattt
     3781 aaggggtgaa atttggacag cttttacaag tgaagccata gataaactct tgccaaatgg
     3841 attaaaattt atacacgata aattcataca ttctaaacat aatgttatcc gcggtatcca
     3901 tggcgatgta aaaacttata agcttgccac ttgtgtttat ggagaagtgc atcaagttgt
     3961 ggttgattgc agaaaagatt caccaactta tttgaagcat gaaagattca tcataaatca
     4021 agataatcag caaatcattt tagttccagc aggttttgga aatgctcatt atgttagcag
     4081 tgaaagtgca gtgtattact ataaatgtgc ttatttagga gaatatatgg atgcacatga
     4141 tcaatttact tatgcatgga atgatgaaag aattggtata gattggccaa caaattctcc
     4201 tatcctttca gagcgtgata ttttagcgat gagtaaggat aaatgatgca aaaagattct
     4261 aaaatttata tagcagggca tggcggcact ttgggaaaaa ctctttataa tacacttata
     4321 gatgagggtt ttaataatat tatcgtaaaa acaagaaaag aattagattt agtagatcaa
     4381 aaagctgtga ctgatttttt cgcaaaagaa aaaccagaat atgttttttt atgtgctgcc
     4441 aagcttgata ccttagggct ttttactcca gccgatgtaa tttatgaaaa tagcgtactt
     4501 caagcaaata ttattcattc atcttatcaa aataatgtta aaaagctaat tttttacggt
     4561 tctgcttggg cttaccctca aaaagctata aatcccatta aagaagagaa tttattagat
     4621 ggaaagctag atttaaaagc cgttgcatat ggtttaccaa aaattatagg aacaaaaatg
     4681 tgcgaaagtt ataatttgca atatggaaca aattttatca ctttgtatct tgcaaatttg
     4741 tatggagaaa caaccgagtt tgatttacaa aaagcaaaag ttttaccggc tttgcttcgc
     4801 aaatttcatt tagcaaagct tttagatgaa aataaaattg atgaggtttt aaaggatttg
     4861 caaatgaatt tcttcgagca agcaatggaa tatttacaaa aatttggtgt aagtaaagat
     4921 agcgtagaaa tttggggtag tggtagtgta attagggaat ttattcatgc aaaagattta
     4981 gtcaatgctt ctatttatgt gatgaaaaat atagatttta aagatattgt ttcatctaat
     5041 gaaccgcatc ttaatgtagg aagtggggaa tttttaagca taaaagaact tgcttgtttg
     5101 attaaaaata ttgttggatt taagggtgaa attatgttta acaattcaaa accagattct
     5161 acaatggata gaatgttaga tagttcaaga ttgcaaaatt taggctggaa ggcaaaaatc
     5221 aagcttgaag acggcattaa aatgatgtat gaatggtatt taaaagagca aaatataaga
     5281 caataggata aatcatgaaa aaaacagcat taattacagg atttacaggg caagttggct
     5341 cacaaatggc agatttcttg ctagaaaaca cagactatga tgttataggt atgatgcgtt
     5401 ggcaagaacc tatggataat atctatcatt taagcgatag gattaataaa aaagatagaa
     5461 tcagtatttt ttatgcagat ttaaatgatt actctagtct tcaaaaactt ttcgagagtc
     5521 aaaggcctga tgtgattttt cacctagcag ctcaatctta tccaaaaact tcttttgata
     5581 tacctataga aacattacaa acaaatatca taggaacagc aaatattttg gaaaacatta
     5641 gaattttaaa ggcaaaagat ggatatgacc ctgtagtaca tatctgctct tcaagtgaag
     5701 tttatggtaa agcaaaaaca ggtgttaaac ttaatgaaga aacagctttt cacggtgcaa
     5761 gtccttatag cataagcaaa attggcactg attatttggg aagattttat ggcgaagctt
     5821 ataacattcg cacttttgtt acaagaatgg gaacgcatag tggcccaaga agaagcgatg
     5881 tgttttttga aagcacagtt gcaaaacaaa ttgctttaat tgaagcgggt tatcaagagc
     5941 ctgttatcaa ggttggaaat ctttcgagtg taagaacctt tcaagattgt cgcgatgcta
     6001 taagggctta ttatctactt tctcttgaga gtcaaaaggg taatattcct tgcggagaag
     6061 cttttaatat agcaggagaa gaggctttta aacttcctga agttatagat atattgctaa
     6121 attttagtga tatggggggg ggtattgagg taagacaagt tgaagatagg atgcgtccta
     6181 ttgatgctga ctatcaaatg tttgataata gtaaaataaa gagttttatc gattggaaag
     6241 ctgaaattcc tgttagacaa atgcttaaag atttgctaaa tcattggaga aatgaaatta
     6301 agagaggcag aattccttta aatcgataaa accatcgatt taaaggaaaa atatgtcaaa
     6361 aaaagtttta attacaggtg gtgcaggtta tataggttcg gttttaacac cgattttact
     6421 cgaaaaaggt tatgaagttt gtgtgattga taatttgatg tttgatcaaa tctctctttt
     6481 atcttgttct cataataaaa attttacttt tataaatggt gacgctatgg atgaaaatct
     6541 cattaagcaa gaggtagcaa aagctgatat tattattccc ctagctgctt tggttggagc
     6601 tccactttgt aaaagaaatc caaaattagc taaaatgatc aattatgaag ctgtaaaaat
     6661 gataagtgat tttgcaagtc cttctcaaat atttatttat cccaatacaa atagcggtta
     6721 tggtatagga gaaaaagatg caatgtgcac tgaagaatct cccttgcgtc ctatctcaga
     6781 atatgggatc gataaagtgc acgcggagca atatttgctt gataaaggaa attgtgtaac
     6841 ttttcgtttg gctactgttt ttggaatttc acctagaatg agacttgatt tacttgttaa
     6901 tgattttacc tatcgtgcat ataaagataa atttatagtg ctttttgaag agcattttag
     6961 acgcaattat attcatgttc gcgatgtggt taaaggattt attcatggaa ttgagaatta
     7021 tgataagatg aagggtcagg cttataatat gggattaagt tctgcaaatt tgactaaaag
     7081 acagcttgct gaaacgatta aaaagtatat tcctgatttt tatatccatt cagccagcat
     7141 aggcgaagat ccggataaaa gagattattt ggtttcaaat gctaaattag aggctacagg
     7201 ttggaaacca gataatactt tagaagatgg cattgaagaa cttttaagag cgtttaaaat
     7261 gatgaaagtt aatcgctttg caaatgttta aataatatta tatagaagtt aagtat
//
LOCUS       DBBXPZ010000078         7229 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.080, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000078 DBBXPZ010000000
VERSION     DBBXPZ010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7229)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7229)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7229
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.080"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            84..368
                     /locus_tag="ACJFD7_001440"
     CDS             84..368
                     /locus_tag="ACJFD7_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF362 domain-containing protein"
                     /protein_id="HGG0860230.1"
                     /translation="MAVKITDICIACGSCIDECPVSAIVDDANNPEGEDRYYVYANKC
                     VECVGHNDQPACASACPTDGCIVWSAVESGQPSRDNIGADMRSGDTPVFA"
     gene            482..895
                     /gene="ndk"
                     /locus_tag="ACJFD7_001441"
     CDS             482..895
                     /gene="ndk"
                     /locus_tag="ACJFD7_001441"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HGG0860231.1"
                     /translation="MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQ
                     AENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIR
                     ADFAESIDANAVHGSDSLENAKIEIDFFFKPNEIC"
     gene            896..1249
                     /locus_tag="ACJFD7_001442"
     CDS             896..1249
                     /locus_tag="ACJFD7_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860232.1"
                     /translation="MKIPFSKINTKEYPFKLNLENMIFEGNLVKINPKLVKINAIMQG
                     FIYRPCDSCGTELELEIKENLELFASDGIFKDEANELSDTIEFFDGHIDLIEVAISEL
                     EAYLSDYFYCINCNN"
     gene            1273..1419
                     /gene="rpmF"
                     /locus_tag="ACJFD7_001443"
     CDS             1273..1419
                     /gene="rpmF"
                     /locus_tag="ACJFD7_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HGG0860233.1"
                     /translation="MAVPKRRVSKTRAAKRRTHYKVSLPMPIKDKDGSYKMPHRANPT
                     TKEY"
     gene            1425..2411
                     /gene="plsX"
                     /locus_tag="ACJFD7_001444"
     CDS             1425..2411
                     /gene="plsX"
                     /locus_tag="ACJFD7_001444"
                     /EC_number="2.3.1.274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043811 - phosphate:acyl-[acyl carrier
                     protein] acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HGG0860234.1"
                     /translation="MINIAIDAMGGDFGEKPIIEGVLKALEAKPFNAILVGNSKILKP
                     LIPKKLEQYIQYEEASEIFSMNGNATDALKNKETTIYKAINLLKEKKVDAVVSAGHSG
                     ASMSLATLRLGRLKGISRPAIATLMPNIVNRTLLLDVGANTDCKAENLFQFAIMGEVY
                     AREIMQIQKPRLALLSNGEEECKGNELTKESHQLMKKIPNFIGNAEGRDIFNGEIDVL
                     VCDGFDGNVILKACEGVATAIFQLLKNEVKQSFISKIGALLMKSSFKKLKKHTDWQEY
                     GGAPLLGVNGCVIISHGKSDSRAIKNAIFQAINFSQSHINELIENELGKYNA"
     gene            2404..3378
                     /locus_tag="ACJFD7_001445"
     CDS             2404..3378
                     /locus_tag="ACJFD7_001445"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0033818 -
                     beta-ketoacyl-acyl-carrier-protein synthase III activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HGG0860235.1"
                     /translation="MLKAGLKSIASYIPEKILSNADLEKIVDTTDEWITRRTGIKERR
                     IASENENSSDLGTKAALKAIERANLKPEDIDAILVATLSPDYFTMPSTACKIASNLGL
                     VNISAFDISAACSGFIYLLEQAKALVESGLKKNVLIVGAEKTSSIMDYNDRSICILFG
                     DGAGAGVVSLDNENHILDVHTASNGNYGDLLMTQRSQKSSLCQTLSMQMKGNEVFKIA
                     VNTLSNDVVEILAKNNILAQEIDLFIPHQANLRIIKAVQEKLNLSDEKCVITVQKYGN
                     TSAASIPMAMNDAYEEGRLKKGNLILLDAFGGGFTWGSALLKFGGENF"
     gene            complement(3375..3725)
                     /locus_tag="ACJFD7_001446"
     CDS             complement(3375..3725)
                     /locus_tag="ACJFD7_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HGG0860236.1"
                     /translation="MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALA
                     ELDALFEKIGASKGDLIQIQIWLANMQDFDAMNEIYDAWIKNYPKPVRACVGSALAEG
                     YLVEIQAFGKLREN"
     gene            complement(3722..4798)
                     /gene="serC"
                     /locus_tag="ACJFD7_001447"
     CDS             complement(3722..4798)
                     /gene="serC"
                     /locus_tag="ACJFD7_001447"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004648 -
                     O-phospho-L-serine:2-oxoglutarate aminotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HGG0860237.1"
                     /translation="MRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKV
                     FEEVHFGAQEKAKKLYGLNDDYEVLFLQGGASLQFAMIPMNLALNGVCEYANTGVWTK
                     KAIKEAQILGVNVKTVASSEESNFNHIPRVEFRDNADYAYICSNNTIYGTQYQNYPKT
                     KTPLIVDASSDFFSRKVDFSHIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPS
                     MLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKAAMLYECIDL
                     SNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASI
                     YNALNLDQVKTLCEFMKEFQGKYA"
     gene            complement(4808..5971)
                     /gene="xseA"
                     /locus_tag="ACJFD7_001448"
     CDS             complement(4808..5971)
                     /gene="xseA"
                     /locus_tag="ACJFD7_001448"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HGG0860238.1"
                     /translation="MTPTELNLKAKALLETHFDDIVLSGEISKITLHGSGHWYFDLKD
                     ERSSIACAMFKGANLKVGFKPAVGNFLELCGSVSLYPESGRYQFIATSMKKAGFGDLE
                     AQFLALKERLQKEGLFDPRFKKSLPKFPKKVGIITSKTSAALQDMLKLIHQKEYFLAK
                     IYIFDALTQGNNAPFSLIQALKKADDMDLDVLIIARGGGSREDLFCFNDENLAREIFK
                     AKTPIISAIGHEIDYVISDFVADFRAPTPSAAIDTLFYSKLDIEQSLDLMEEKLMQLW
                     NYKIQNYENLLLNLSKFFKFNSLPKIIDEKIKQSHNIEKQLNHLLANQMRYNELKLDK
                     LQNAYLQHENFFNKSKKFICIRKNGKIANLEDLKSDDIVILSSQTSQKEAKIL"
     gene            complement(5968..6675)
                     /gene="ubiE"
                     /locus_tag="ACJFD7_001449"
     CDS             complement(5968..6675)
                     /gene="ubiE"
                     /locus_tag="ACJFD7_001449"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052624 - 2-phytyl-1,4-naphthoquinone
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0042372 - phylloquinone biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HGG0860239.1"
                     /translation="MQKQEKIIEMFNQIAPTYDKANRILSFGADVAWRKKACQRVMSL
                     YLKKDLKIADIACGTGGMIEIWQESALKMEKHILNIKGIDPSSGMLNVAKEKFPNVEF
                     IEAGAQNLPLESQSLDILSISYGIRNVVERQKALSEFARVLQKDGILVVLEFTKREKG
                     GFIAACRDFYLKNILPSIGGIISKNKSAYEYLPNSIEGFLSKEEFILELKNAGFEILD
                     YKSFSFGVSSMFIAKKL"
     gene            complement(6678..>7229)
                     /locus_tag="ACJFD7_001450"
     CDS             complement(6678..>7229)
                     /locus_tag="ACJFD7_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860240.1"
                     /translation="SLCEFLFYSRSLYIVLSSMNTILDKNLSNILALKFKDITKKTQD
                     ILASENSNQDLLLFLSDEKIQDLFNDFDFFIKENSFYEGDCKDRFFKQLVALELRKKI
                     ILFRKNILKNFDLELFENSFFELAIFLEYFYRFLEIKNLNKLYEKYYKDRDKNIFSKI
                     INNKNKFCKLLKKSSKNLKIYKG"
BASE COUNT         2536 a         1150 c         1039 g         2504 t
ORIGIN      
        1 taaaattttg attatcaaaa tttacattat ttaagaattt tatgctaaaa tcttttaaat
       61 cttaatatta aaaaggagaa aaaatggctg taaaaattac agatatatgt attgcttgtg
      121 gttcttgtat tgatgagtgt ccagtgagtg ctatcgttga tgatgctaac aatccagaag
      181 gtgaagatag atattatgtt tatgcaaaca aatgcgttga atgcgtagga cataatgatc
      241 aaccagcttg tgccagtgct tgcccaacag atggatgtat agtttggagt gctgtagaat
      301 caggacaacc aagtcgtgat aatattggcg ctgatatgag aagtggggac actccagttt
      361 ttgcataatt ttaaaaaatt aaaaagctag agattcctag ctttttcttt taatttaact
      421 ttctttaaac aaattcaagt ataattttaa gctttattaa aatcaaggag ttattacaaa
      481 gatggaaaaa actttatcta taattaaacc tgatgctgtt aaaaaaggtg ttataggaaa
      541 aattttagat cgttttgaaa gcaatggatt aagaatcgct gcaatgaaaa aagttcaact
      601 tagtaaagaa caagctgaaa atttttatgc tgttcataaa gaaagacctt tttttaaaga
      661 cttggttgaa tttatgatta gcggtcctgt tgttgtttct gtactagaag gagaaggtgc
      721 tgtattaaaa aatagagatt taatgggagc gacaaatcct aaagaagcta aagcaggaac
      781 aattagagcc gattttgctg agagtattga tgctaatgct gttcatggaa gtgacagctt
      841 ggaaaatgca aaaatagaaa ttgatttttt ctttaaacca aatgaaattt gctaaatgaa
      901 aatccctttt tctaagatta atacaaagga atatcctttt aaacttaatc ttgaaaatat
      961 gatttttgag ggaaatttag taaaaataaa tcctaagctt gttaaaataa atgctattat
     1021 gcaaggtttt atctatagac cttgtgatag ttgtggaact gagttagaac ttgaaattaa
     1081 agaaaattta gaactttttg caagtgatgg tatttttaaa gatgaagcaa acgaattgag
     1141 cgatactata gaattttttg atggacatat tgatttaata gaagttgcta ttagtgagct
     1201 tgaagcttat ttgagtgatt atttttattg cataaattgc aataattaat taaattttat
     1261 aaaggagaaa aaatggcagt accaaagaga agagtgagca aaactcgtgc agctaaacgc
     1321 agaactcact ataaagttag tcttcctatg cctataaaag acaaagatgg aagctacaaa
     1381 atgcctcacc gtgcgaatcc aacaactaag gaatattaaa atcaatgatt aacattgcca
     1441 ttgatgcaat gggtggtgat tttggagaaa aacccattat agaaggcgtt ttaaaggcac
     1501 tagaagcaaa accttttaac gctatcttag tgggaaattc taaaattcta aaacctttaa
     1561 taccaaaaaa attagaacaa tatatacaat acgaagaagc tagtgaaatt ttttcgatga
     1621 atggaaatgc cacagatgct ttaaaaaata aagaaacaac catatacaaa gctattaatt
     1681 tattaaaaga aaaaaaagta gatgctgtag tttcagcggg tcatagtgga gcaagtatgt
     1741 ctttggctac cttaaggctt ggaagactta aaggtatttc aagacctgct attgccactt
     1801 taatgccaaa tatcgttaac agaactttac ttttggatgt tggagctaat acagattgta
     1861 aagctgaaaa tttatttcaa tttgccataa tgggtgaagt ttatgctaga gaaattatgc
     1921 aaattcaaaa accacgcctt gctttacttt ctaatggtga agaagaatgc aaaggcaatg
     1981 aacttaccaa agaaagtcat cagcttatga aaaaaattcc aaattttata ggtaatgctg
     2041 aaggtagaga tattttcaat ggtgaaatag atgttttagt ctgcgatggt tttgatggaa
     2101 acgttatctt aaaggcttgt gaaggtgtag caacagctat ttttcagctt ctaaaaaacg
     2161 aagtaaagca atcttttatt tctaaaatag gtgctttact tatgaagtca tcttttaaaa
     2221 aattaaaaaa acacacagat tggcaagaat atggcggagc accccttctt ggagttaatg
     2281 gctgcgtgat cataagtcat ggaaaaagtg attctagagc tattaaaaat gcaatttttc
     2341 aagctataaa ttttagccaa tctcatatca atgaacttat agaaaatgaa cttgggaaat
     2401 ataatgctta aagccggtct taaaagtata gcttcttata ttccagaaaa aattttaagc
     2461 aatgctgatc ttgaaaaaat agtagatacc accgatgaat ggatcactag acgcacaggt
     2521 attaaagaaa gacgcattgc tagtgaaaat gaaaattcta gcgatttggg cacaaaagct
     2581 gcattaaaag ccatagaaag agcaaattta aaacctgaag atattgatgc gattcttgta
     2641 gccactttaa gtcctgatta ttttactatg ccttcaacgg cttgtaaaat tgcttcaaat
     2701 ttaggacttg taaatattag tgcttttgat atttcagcag cttgttctgg ttttatctat
     2761 ttgcttgaac aagctaaagc cttagtagaa agtggtttga aaaaaaatgt tttaatcgta
     2821 ggagctgaaa aaacaagttc aattatggat tacaatgaca gaagcatttg catactcttt
     2881 ggagacggtg cgggtgctgg agttgtaagt ttggacaatg aaaatcatat ccttgatgta
     2941 catactgcaa gcaatggtaa ttatggagat cttttaatga ctcaaagatc gcaaaaatca
     3001 agtctatgtc aaacactttc tatgcaaatg aaaggcaatg aagtttttaa aatagcagta
     3061 aacacgctta gcaatgatgt tgtagaaatt ttagctaaaa ataacatttt agcacaagaa
     3121 attgatcttt ttattcctca tcaagctaat ctacgcatca ttaaagccgt ccaagaaaaa
     3181 ctcaatctaa gcgatgaaaa atgtgtgatt accgtacaaa aatatggcaa tacttcagct
     3241 gcttctatac ctatggcaat gaatgatgcc tatgaagaag gacgacttaa aaaaggaaat
     3301 ctgatcttac tagatgcttt tggcggtggt tttacttggg gatctgcgct tttaaaattt
     3361 ggaggagaga atttttaatt ctctcttagc tttccaaaag cttgaatttc taccaaataa
     3421 ccctctgcta aagcacttcc tacacaagct ctaacaggtt taggataatt tttaatccaa
     3481 gcatcataaa tttcattcat tgcatcaaaa tcttgcatat tagccaacca gatttgaatt
     3541 tgaatcaaat ctcctttgct tgcacctatt ttttcaaaca aagcatcaag ttctgcaagt
     3601 gcttctttgg tttgtttttt aatatctccg ctaggttcaa aagccacttg tcctgcagtc
     3661 ttaaaatatt tatcaaaaac aataatttgc gacattctat cgcactcatc aaaacgcttt
     3721 atcatgcata ttttccttga aattctttca taaattcaca caaggttttt acctgatcca
     3781 aattaagcgc attataaata cttgcacgaa ttcctcctaa aattctatgt cctttaagtc
     3841 ctatcattcc agcttcttcg gcttccttta caaaaagagg ctctaaatct ttatttttag
     3901 caatattaaa actcacattc attaaagatc tgtccttttt atctgcatgt cctttataaa
     3961 atccattact taaatcaata cactcataaa gcatagcagc tttttgagaa tttttctcat
     4021 gtactttatc aagtccgcct tgatttaaaa gccaatccat ttcaagatta aacatataaa
     4081 tggcaaaggt tggaggcgta ttaaacaagg actgattctc agcatgagtc aaataattta
     4141 acatactagg aatttgttta tttttagatc tttctaacat atctttacgg ataaaaatac
     4201 aacttaaacc cgaaattcca gcattttttt gcactccgcc ataaaaaaga gcaatatgtg
     4261 aaaaatctac ttttctagaa aaaaaatcac tcgatgcatc cacaatcaaa ggagttttag
     4321 ttttaggata attttgatat tgagtgccgt aaatagtatt gttagaacaa atataagcat
     4381 aatcagcatt atctctaaat tccactctag gaatatgatt aaaattactt tcctcgctac
     4441 ttgctacggt tttaacattg acacctaaaa tttgtgcttc tttaattgct ttttttgtcc
     4501 aaactcctgt atttgcatat tcacaaaccc catttaaagc caaattcata ggaatcatag
     4561 caaattgtaa acttgctcca ccttgtaaaa ataatacttc ataatcatca tttaacccgt
     4621 aaagtttttt agctttctct tgtgctccaa aatgcacttc ttcaaatact tttgtgcggt
     4681 gagaaatttc cattatagaa taacccctac cctgataatc acagagttct ttttgagctt
     4741 gctctaaaat ttctaaaggt aaagtcgatg gccctgcact gaaattgatt tttctcataa
     4801 tctatcctta taaaattttt gcttcttttt gagaagtttg agaacttaaa ataacgatat
     4861 catcactctt aagatcttct aaatttgcta ttttaccatt ttttctgata caaataaact
     4921 ttttgctttt attaaaaaaa ttctcatgtt gcaaataagc attttgcaat ttatctaatt
     4981 ttaattcatt ataacgcatt tgatttgcca atagatgatt taattgcttt tctatattat
     5041 ggctttgttt tattttttca tctattattt ttggcaaaga attaaatttg aaaaatttgc
     5101 ttaaatttaa aagcaaattt tcataatttt gtattttata attccaaagt tgcattaatt
     5161 tttcttccat taaatccaaa ctttgctcta tatccaactt agaataaaac aaagtatcta
     5221 tagcagctga aggcgttgga gctctaaaat ctgcaacaaa atcactaata acataatcaa
     5281 tctcatgtcc tatggctgaa ataataggag tttttgcttt aaaaatctct cttgctaaat
     5341 tttcatcatt aaaacaaaaa agatcttctc tgcttcctcc accacgtgct ataataagaa
     5401 catctaaatc catatcatcg gcttttttta aagcttgtat aagagaaaaa ggagcattat
     5461 ttccttgagt taaagcatca aaaatataaa tttttgccaa aaaatattct ttttggtgaa
     5521 taagttttaa catatcttgc aaagcagcag aagtttttga agtgataatg cctacttttt
     5581 taggaaattt tggcaaagat tttttaaagc gtggatcaaa aagtccttct ttttgcaaac
     5641 gctcttttaa agccaaaaac tgtgcttcca aatccccaaa acctgctttt ttcatactag
     5701 tagcgataaa ttgataacga ccactttcag gatataaact tacacttcca caaagctcta
     5761 aaaaattccc cacagctggt ttaaatccga cttttaaatt agctccttta aacatagcac
     5821 aagcaatgct tgatctttca tcttttaaat caaaatacca atgccctgaa ccatgcaaag
     5881 taatttttga aatttctcca cttaaaacta tatcatcaaa atgtgtttct aataaagcct
     5941 ttgctttaag atttaattct gttggtgtca tagttttttt gctataaaca ttgaactcac
     6001 gccaaagcta aaacttttat aatcaagtat ttcaaaacca gcatttttaa gttctaagat
     6061 gaactcttcc ttacttaaaa atccttcaat agagtttggc aaatactcat aagcactttt
     6121 atttttactg attatcccac ctatacttgg taaaatattt ttaagataaa aatctctaca
     6181 agctgctata aatccaccct tttctctttt tgtaaattcc aaaactacca aaataccatc
     6241 tttttgaagt actctagcaa attcacttaa ggctttttgt ctttctacaa cattgcgaat
     6301 gccataacta atgcttaaaa tatctaaact ttgactttct aaaggtaaat tttgcgcccc
     6361 tgcttctata aattcgacat ttggaaattt ttcttttgca acatttagca tgccactact
     6421 tggatcaata cctttaatat ttagaatatg tttttccatt tttaaagcac tctcttgcca
     6481 aatctctatc ataccccctg tgccacaggc aatatcagcg atttttaaat ctttttttaa
     6541 atacaaactc atcactcttt gacaagcttt tttgcgccac gctacatcag ctccaaagct
     6601 taaaattcta ttcgccttat cataagtagg tgcaatttga ttaaacattt ctataatttt
     6661 ttcttgtttt tgcattttta tcctttgtaa attttcaaat ttttacttga ttttttaagc
     6721 aatttgcaaa atttattttt attattgatt attttcgaaa aaatattttt atccctatct
     6781 ttgtaatatt tttcataaag tttgtttaaa ttttttatct ctaaaaaacg ataaaaatat
     6841 tctaaaaata ttgccaattc aaaaaaacta ttttcaaaaa gctctaaatc aaaatttttt
     6901 agtatatttt ttctaaataa aataattttt tttctaagtt ctaacgcaac aagttgttta
     6961 aaaaacctat ctttgcaatc gccttcataa aaagaatttt cctttatgaa aaaatcaaaa
     7021 tcattaaaca aatcttggat tttttcatcg cttaaaaata gcaataaatc ttgatttgaa
     7081 ttttcacttg ctaaaatatc ttgagttttt ttcgttatat ctttaaactt taaagccaaa
     7141 atattactca aatttttatc taaaatagta ttcatacttg ataaaactat atacaagctt
     7201 cttgaataaa ataaaaattc gcataaact
//
LOCUS       DBBXPZ010000079         7141 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.081, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000079 DBBXPZ010000000
VERSION     DBBXPZ010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7141)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7141)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7141
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.081"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            36..123
                     /locus_tag="ACJFD7_001451"
     tRNA            36..123
                     /locus_tag="ACJFD7_001451"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:70..72,aa:Ser,seq:gga)
     gene            170..245
                     /locus_tag="ACJFD7_001452"
     tRNA            170..245
                     /locus_tag="ACJFD7_001452"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:203..205,aa:Ala,seq:ggc)
     gene            249..324
                     /locus_tag="ACJFD7_001453"
     tRNA            249..324
                     /locus_tag="ACJFD7_001453"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:282..284,aa:Val,seq:gac)
     gene            352..882
                     /locus_tag="ACJFD7_001454"
     CDS             352..882
                     /locus_tag="ACJFD7_001454"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HGG0860241.1"
                     /translation="MQNTIIQKAIHKDLNSILEITKDALNAMKTMNFHQWDENYPNEI
                     VFQEDIQAQELYVFKENDEILGFICINEKFEPEFYKQVIFNKNYDDKAFYLHRLAVKQ
                     NAKGKGVAQKLLNFCENFALENHKVSLRADTHSKNFPMNSLFKKLDFNFCGNFDIPNY
                     QDPFLAYEKILNQKAF"
     gene            complement(862..1464)
                     /gene="leuD"
                     /locus_tag="ACJFD7_001455"
     CDS             complement(862..1464)
                     /gene="leuD"
                     /locus_tag="ACJFD7_001455"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HGG0860242.1"
                     /translation="MQKFIIHKGIACPLEYANIDTDQIIPKQFLLAVSKQGFGKHLFH
                     DLRYLDDKESVLNMDFNLNKKEYQNSSILVSFENFGNGSSREHAPWALVDYGIRAIIA
                     PSFADIFKNNALGNGLLTIELAKDEVLEIVDELKKSQDKNIEISLLEKRVFFKDKIFS
                     FDLDDFHRICLLEGLDNIALTLKHEAQIKAYEKNSKSFLV"
     gene            complement(1466..2878)
                     /gene="leuC"
                     /locus_tag="ACJFD7_001456"
     CDS             complement(1466..2878)
                     /gene="leuC"
                     /locus_tag="ACJFD7_001456"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HGG0860243.1"
                     /translation="MIMAKTLYEKVFDAHVVYEGKNELPILYIDRHLIHEVTSPQAFS
                     GLKMAKRRMARADLTLATIDHDVSTKSVDLNACSDMAKEQITTLMQNTKEFGVRLLGL
                     GDKNQGIVHIVGPELGFTLPGVTLVCGDSHTATHGAFGALAFGIGTSEVEHVMATQTL
                     KQAKLKTMKIECKGQFQKGVYAKDLILYLIAQYGTAKGTGYAIEFCGELIKNLSMEAR
                     MTLCNMAIEFGAKVGMIAPDEITFEYIKGKEFAPKGEEFQKYCEYWKSLRSDEGAKYD
                     ESITLDVSKIKPQISYGTNPSQVIGIDEKIPKISDFKNQSEQKSLLDALSYVNLEQDQ
                     VIEGVKIDIVFIGSCTNGRLEDLKIAADILKGRKIHKNVKALIVPGSMQVRKEAENLG
                     LDKIFIEAGCEWRYAGCSMCLGMNDDKANSGQRVASTSNRNFVGRQGKGSITHLMSPA
                     SAAACAIEGVICDNRKYLGV"
     gene            complement(2865..3941)
                     /gene="leuB"
                     /locus_tag="ACJFD7_001457"
     CDS             complement(2865..3941)
                     /gene="leuB"
                     /locus_tag="ACJFD7_001457"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HGG0860244.1"
                     /translation="MKTYKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFEFNEAKI
                     GGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFN
                     LFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDTEI
                     YTKKEIERIAHIAFESARIRKKKVHLIDKANVLASSILWREVVANVAKDYQDINLEYM
                     YVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEP
                     AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQGKMTKDLN
                     AKSYLNTDEMGDCILEILKENNNG"
     gene            complement(3928..5475)
                     /gene="leuA"
                     /locus_tag="ACJFD7_001458"
     CDS             complement(3928..5475)
                     /gene="leuA"
                     /locus_tag="ACJFD7_001458"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002886492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HGG0860245.1"
                     /translation="MKDNKIIIFDTTLRDGEQALGSSLGINQKLQIALALENLGVDVI
                     EAGFPVSSQGDFKAVQKIASKVKNSTICALSRALDKDIDMAYEALKVAKHFRIHTFIA
                     TSTLHMQDKLKKDFDEILSMAKRAIIRARSYTDDVEFSCEDAGRTPIDNLCFMVENAI
                     KAGAKTINIPDTVGYTLPSEFANIIKILFNKVPNIDKAIISVHCHNDLGVATGNSLSA
                     ILQGARQIECTINGLGERAGNCALEEVVMAIKTRKDYLKGFYTDIKCENIFKTSKLVS
                     AITNESIPSHKAIVGSNAFSHSSGIHQDGVLKNRQTYEIISPSAIGIHENRMLMTARS
                     GRAMIKTCLENLGYDENTYNLDDVYERFLRLADKKGQVYDYDLEALMFLSYENEEENE
                     FVIEKLSVISGNIPTACVCMRIKEELKTEACTGNGPVEAVFNCIARITNLKPVLKAYS
                     INAKSSGVDAQGQVDVDLEFKGRKFHGKGLSTDVIEASAQAFVSAYNAIYRSLKVEER
                     KMWHENL"
     gene            5795..6424
                     /locus_tag="ACJFD7_001459"
     CDS             5795..6424
                     /locus_tag="ACJFD7_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860246.1"
                     /translation="MLKELLEIKKEMEPVIHEANVKLNVLAREVIVRKKEYEIYGPMV
                     DRVYLDNAIYVKVMSSGRDVKTDNVTIKNGFYMVFVAPEKESTKDIKNKLKVAYEGLD
                     NKFIATLIRSCQRFKEIINKTQATLAKASKMNVVVKTNLGEASAALKFNITIEYTKEN
                     QKLTRENSKSAGSFRDTKTYINLVVEKNTDSQICEKLLDDVEKYFIGGG"
     gene            complement(6460..7104)
                     /locus_tag="ACJFD7_001460"
     CDS             complement(6460..7104)
                     /locus_tag="ACJFD7_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HGG0860247.1"
                     /translation="MNKKLLSIIASATLSSNLALADENSGFFIGADAAWMHAQVKSEL
                     KHKNTKQNFNGDISGNIPSFGLKLGYRLNENHRIYAGYNYSDEFSDFIKTPKIQIEGD
                     FTTHKFLTGYDFTPKLFEKTRAVLGVYGGYARTDLTLKTSFLSLSQNFDGYFYGAKIG
                     ALYDLTPHNEIELGFKAEQIHYNSRNFYQNKVGSNFYDPKQTNYGVYLGYNYKF"
BASE COUNT         2369 a         1381 c          976 g         2415 t
ORIGIN      
        1 aagcttttat agatataatg aacgctttat ttcatagaca ggtgtccgag cggttgaagg
       61 agcacgcctg gaacgcgtgt aaagtgcaag ctttcgaggg ttcgaatccc ttcctgtctg
      121 ccatcaaata aactttaagg caaactaagt tataatacaa acttcatttg gggcattagc
      181 tcagctggga gagcacaacg ctggcagcgt tggggtcagc ggttcgaacc cgctatgctc
      241 caccatatgg ttccgtagct cagctggtag agcactacct tgacatggta gtggccgttg
      301 gttcaagtcc aatcggagcc accatcaccc ttccttatac aaaggattat catgcaaaac
      361 actatcatac aaaaagccat ccataaagat ttaaattcta tacttgaaat cacaaaagat
      421 gctttaaatg ctatgaaaac tatgaatttt caccaatggg atgagaatta tcccaatgaa
      481 atagtttttc aagaagatat acaagcacaa gaactttatg tgtttaaaga aaatgatgaa
      541 attttaggct ttatctgtat caatgaaaaa tttgaacctg aattttacaa acaagttatt
      601 tttaacaaaa attatgatga taaagccttt tatctacacc gtttagctgt caaacaaaat
      661 gcaaaaggca aaggcgtagc acaaaaactt ttaaattttt gcgaaaattt tgccttggaa
      721 aatcacaagg taagtttaag agcagatact catagtaaaa attttcctat gaattcgctt
      781 tttaaaaagc ttgattttaa tttttgtgga aactttgaca tacctaatta ccaagatcct
      841 tttttagctt atgaaaaaat tctaaaccaa aaagcttttt gagttttttt cataggcttt
      901 gatttgtgct tcatgtttta aagttaaagc tatattatca agcccttcca aaagacaaat
      961 tctgtgaaaa tcatctaaat caaaagaaaa aatcttatct ttaaaaaata ctcttttttc
     1021 caacaaagaa atttctatat ttttatcttg ggattttttt aactcatcaa ctatttccaa
     1081 aacctcatct ttagcaagtt ctatagtgag caaaccgttt cctaaggcat tgtttttaaa
     1141 aatatccgca aaagaaggtg cgataatagc tctaatacca taatcaacca aagcccaagg
     1201 cgcatgctct cttgaagagc cattaccaaa attttcaaaa ctcaccaaaa tagagctatt
     1261 ttgatattct tttttattga gattaaaatc catatttaaa acactttctt tatcatctaa
     1321 ataacgcaaa tcatggaaca aatgcttgcc aaaaccttgc ttagacactg caagtaaaaa
     1381 ttgcttaggt ataatttgat ctgtgtctat attggcatat tctaaaggac aagctatacc
     1441 tttatgtata ataaattttt gcatattaaa ctcctaaata ctttctatta tcacaaataa
     1501 caccttctat ggcacaagct gccgcacttg caggactcat caaatgagtg atagaacctt
     1561 taccttgtct gcctacaaag ttacgatttg aagttgaagc aactctttga cctgaatttg
     1621 ctttgtcatc attcatacca agacacatag aacaccctgc atatctccac tcacaccctg
     1681 cctcgataaa aatcttatcg agtcctaaat tttcagcttc ttttcttact tgcattgaac
     1741 caggcacgat taaagcttta acatttttat gaattttgcg cccttttaag atatcagcgg
     1801 ctattttaag atcttctaaa cgcccatttg tgcaagatcc tataaataca atgtcgattt
     1861 ttaccccttc tataacttga tcttgctcta aatttacata agataaagca tcaagcaaag
     1921 atttttgctc actttgattt ttaaaatcac ttatttttgg aattttttca tctataccaa
     1981 tcacttgcga aggatttgtt ccatagctaa tttgtggttt tatcttgctt acatctagag
     2041 taatactctc atcatatttt gctccttcat cgcttcttaa actcttccaa tactcgcaat
     2101 acttttgaaa ttcttctcct ttaggtgcaa attcctttcc cttaatatac tcaaaagtga
     2161 tctcatcagg agctatcata cctactttag ctccaaattc tatagccata ttacaaagag
     2221 tcattctagc ttccatgctt aaatttttta taagttctcc acaaaattct atagcataac
     2281 ctgtgccttt tgctgtgccg tattgtgcga tcaaatacaa aatcaaatcc ttagcataaa
     2341 cgcctttttg aaactgccct ttacattcga ttttcatagt tttaagtttg gcttgtttta
     2401 aagtttgcgt tgccatgaca tgctctactt cactcgtgcc tataccaaag gctaaagctc
     2461 caaaagcccc atgtgttgcc gtatgagaat ccccacaaac taaagtaacc ccaggtaaag
     2521 taaagccaag ctcaggacct actatatgaa ctatgccttg atttttatct ccaagtccta
     2581 aaagccttac tccaaattcc ttagtatttt gcatcaaagt tgtaatttgc tcttttgcca
     2641 tatcagaaca agcatttaaa tccacacttt tagttgaaac atcatgatct atggtagcca
     2701 aagttaaatc cgctcttgcc attctacgct tagccatttt aagccctgaa aatgcttgag
     2761 ggcttgttac ttcatggatt aaatgtctat cgatataaag tataggaagt tcgtttttgc
     2821 cttcataaac cacatgagca tcaaagactt tctcatataa agttttagcc attattattc
     2881 tcctttaaaa tttctaaaat acaatccccc atttcatcgg tatttaaata cgacttagca
     2941 tttaaatcct tagtcatttt tccttgtgcc aatgccaaag atatagcatt ttctatatcc
     3001 tgtgcggctt gttcttcttt gaaactatac tttaacatca aagccgcact taaaatttga
     3061 gctatgggat tagctatatt taaatgagct atatcaggtg cacttccacc tgctggctca
     3121 taaagtccaa aacctttatc gtttaaactt gctgaactta acaaacccaa agatccatta
     3181 atggcagcta actcatcgct caaaatatca ccaaaaagat ttgaacaaag cataacatca
     3241 aaaatgctag gattttttac aatctgcatc gcagcattat ccacatacat gtactctaag
     3301 tttatatctt gataatcttt tgcaacattt gccaccactt ctcgccacaa aatagaactt
     3361 gctaaaacat tcgccttgtc gattaaatgc acttttttct ttcttattct tgcactttca
     3421 aaagcgatat gggctatcct ttctatctct tttttagtgt aaatttcagt atcatacgca
     3481 ctttccttgc ctaaatcttg cttgccaaaa taaatcccac ctgtaagctc tctaacacat
     3541 aaaatatcca ctcctttttg gataatctca ttttttaaag gtgaagcatg agttaaactt
     3601 tcataaattt tacaaggacg caaatttgca aacaaattaa aatgctttct taaaggcaaa
     3661 agcgaggctc tttcaggtct ttgatctatg ggcaaattat cccacttagg cccacccaca
     3721 gagccaaata aaatcgcatc actttgctca caaagcttta aagtttcatc acttaaagcc
     3781 actccataag catctatact tgcaccgcct attttagctt cattaaattc aaaactaaaa
     3841 ttgtattttt gcgcgataaa agttaaaatt tttaaagcct ctttcattac caaaggccct
     3901 ataccatctc ctgctaagac agctacttta taagttttca tgccacattt tcctttcttc
     3961 tacttttaaa gagcgataaa tcgcattgta agcactcaca aaagcttgtg ctgaagcttc
     4021 tataacatct gttgaaagtc cttttccatg gaattttctc cctttaaatt ccaaatccac
     4081 atccacttgc ccttgagcat ctactcctga actttttgca ttgatactat aagcttttaa
     4141 cacaggcttt aaatttgtta tcctagcaat gcagttaaaa actgcttcaa caggaccatt
     4201 tcctgtgcaa gcttcagttt ttagctcttc tttgatacgc atacaaacac aagcggttgg
     4261 gatattgcca ctaatcacgc ttaatttttc aatcacaaat tcattttctt cttcattttc
     4321 atagcttaaa aacatcaaag cttccaaatc ataatcatat acttgaccct ttttatccgc
     4381 aaggcgtaaa aaacgctcat aaacatcatc taaattataa gtattttcat catagcctaa
     4441 attttcaagg caagttttta tcatagccct tccacttctt gccgtcatta acatacgatt
     4501 ttcatgaatt cctatggcac tagggcttat gatctcgtaa gtttgcctat ttttaagcac
     4561 tccatcttga tgaatgcctg aactatgaga aaacgcattg ctacccacta tagctttatg
     4621 cgaaggtatg ctttcattag tgatagctga aactaatttt gaagttttaa agatattttc
     4681 acatttaata tcagtataaa aaccttttaa ataatctttc ctagttttta tcgccataac
     4741 cacttcttct aaagcacaat tgcccgccct ttcgccaagt ccatttatag tgcactctat
     4801 ctgtcttgca ccttgtaaaa tagcacttaa gctattgccc gttgccacac ctaagtcatt
     4861 gtgacaatgc acagaaatga tagctttgtc tatatttggc actttgttaa ataaaatttt
     4921 gatgatatta gcaaattcac ttggcaaggt atagcctact gtatctggga tatttatagt
     4981 tttagcgcct gcttttatcg cattttccac cataaaacaa aggttatcta tcggagttct
     5041 tcctgcatct tcgcatgaga attctacatc atcagtataa gatcttgctc ttataatcgc
     5101 tctttttgcc atagacaaaa tttcatcaaa atcttttttt aatttatctt gcatatgcaa
     5161 agtcgaagtg gctataaaag tatgaattct aaaatgcttt gccactttta aagcttcata
     5221 agccatatct atatctttat ccaatgctct agaaagtgca caaatagttg agtttttcac
     5281 cttagaagcg atcttttgca ccgctttaaa atccccttgt gaagataccg gaaaacctgc
     5341 ttctataacg tctacgccta aattttcaag cgctaaagcg atttgtaatt tttgattgat
     5401 acccaaagaa ctgcctaaag cttgttctcc atcacgcaaa gtggtatcaa agattatgat
     5461 tttattatct ttcatgattt aatcctttaa aaccaaacag actgaatgaa ttaaaaattc
     5521 aaaaacttaa caacaatgat aaaaaattaa aaatgtaaaa aatgattaaa aataaaattg
     5581 agttttagag tgagagttgc agtagcagat taaaagtatt gtctttactt ttttgttgga
     5641 ctgaatttga aatttcaaaa atttgtttca tcttttcctc ctttgttaaa attaatactt
     5701 aatgtatcat atttttagta aatgtgtttg taaaattctt aaattaagaa aattattgat
     5761 ataattgtaa ttttaagtaa caaaaaggaa gttgatgtta aaagaactct tagagattaa
     5821 aaaagaaatg gaacctgtta tccacgaagc caatgtgaaa ttaaatgtcc tagctcgtga
     5881 agtcatagtc cgaaaaaaag aatacgaaat ttatgggcct atggtagatc gtgtttatct
     5941 tgataatgcc atttatgtta aagttatgtc aagtggacgc gatgtaaaaa cagacaatgt
     6001 gactataaaa aatggttttt atatggtttt tgttgcccct gaaaaagaaa gtacaaaaga
     6061 tatcaaaaat aaactcaaag tagcttatga aggacttgat aacaaattta tcgctacact
     6121 tatacgatct tgccaacgct ttaaagagat cataaacaaa acccaagcta cacttgctaa
     6181 agcttctaaa atgaatgtgg tagtaaaaac gaatttaggt gaagcaagtg ctgctctaaa
     6241 atttaacatc actatagaat atactaaaga gaatcaaaaa ctcactcgtg aaaattcaaa
     6301 atcagcagga agtttcagag atactaaaac ttatatcaat cttgtagtag aaaaaaatac
     6361 agattctcaa atttgtgaaa aactacttga tgatgttgaa aaatacttta tcggtggagg
     6421 ttgatttcat taatgcaagt tataaaaact tgcattagat taaaatttat aattatatcc
     6481 taaatataca ccataatttg tttgtttagg atcgtaaaag tttgaaccca ctttattttg
     6541 ataaaaattt ctagaattat aatgaatttg ctctgcttta aagcctaatt ctatttcatt
     6601 atgtggtgtc aaatcatata aagcacctat tttcgctcca taaaaataac cgtcaaaatt
     6661 ttgcgacaaa gataaaaagc ttgtttttaa ggtaagatct gttcttgcat atcctccata
     6721 cacacctaaa acagctctgg ttttttcaaa aagcttagga gtaaaatcat aacctgttaa
     6781 aaatttatgt gtagtaaaat caccttcgat ttgaatttta ggagttttga taaaatcact
     6841 aaattcatca gaataattat aaccagcata aattctatga ttttcattta gacgatatcc
     6901 aagttttaga ccaaacgatg gtatattacc tgaaatatct ccattaaaat tttgctttgt
     6961 attcttatgt tttaactcac tttttacttg agcatgcatc caagctgcat cagcacctat
     7021 aaaaaaacca gaattctcat ctgctaaagc caaatttgaa gacaaagtag cacttgcgat
     7081 aatgcttaat aattttttat tcataaccta actccttata ataaaattcg atctaaaaaa
     7141 t
//
LOCUS       DBBXPZ010000080         7051 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.082, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000080 DBBXPZ010000000
VERSION     DBBXPZ010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7051)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7051)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7051
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.082"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(21..959)
                     /gene="accA"
                     /locus_tag="ACJFD7_001461"
     CDS             complement(21..959)
                     /gene="accA"
                     /locus_tag="ACJFD7_001461"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HGG0860248.1"
                     /translation="MASYLDFEKNIQQIDEDIINAQIKGDTEAVSILKKNLEKEISKT
                     YKNLSDFQRLQLARHPDRPYALDYIELILNDAHEIHGDRAFRDDPAIVCFMGYLGEKK
                     IIVIGEQKGRGTKDKIARNFGMPHPEGYRKALRVARLAEKFQIPILFLIDTPGAYPGI
                     GAEERGQSEAIARNLYELSDLKIPTIAIVIGEGGSGGALAIGVADKLAMMKNSVFSVI
                     SPEGCAAILWNDPAKSEAATKAMKVTADDLKSQGLIDDVIDEPTNGAHRNKEAAAVAI
                     ADYVKKSLNELENIDVRELSANRMQKILKLGAYQEA"
     gene            complement(961..2175)
                     /locus_tag="ACJFD7_001462"
     CDS             complement(961..2175)
                     /locus_tag="ACJFD7_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HGG0860249.1"
                     /translation="MKRVVVTGIGMINALGLDKESSFKAICNGESGVNKITLFDATDF
                     PVQIAAEVKNFDPLEVVDGKEVKKIDRFIQLGIKAAREAMQDAGFSEELDKEEFGIVS
                     ASGIGGLPNIEKNSIICSERGPRKISPFFIPSALVNMLGGLISIEHGLKGPNISCVTA
                     CAAGTHAIGEAYKSIALGNAKKMLVIGAEAAICPVGIGGFASMKALSTRNEDPQHASR
                     PFDKERDGFVMGEGAGALVFEEYEEAKKRGATIYAELIGFGESADAHHITSPTLDGPL
                     RAMKKALNMAGNPKVDYINAHGTSTPVNDKNETAAIKELFGNNIPLISSTKGQTGHCL
                     GAAGAIEAVVSVMALRDGVVPPTINQLVKDDECDLDYIPNISRKVDLKVVMSNSFGFG
                     GTNGCVVFKKVD"
     gene            complement(2202..2435)
                     /gene="acpP"
                     /locus_tag="ACJFD7_001463"
     CDS             complement(2202..2435)
                     /gene="acpP"
                     /locus_tag="ACJFD7_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000036 - acyl carrier activity [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HGG0860250.1"
                     /translation="MATFDDVKAVVVEQLSIDADAVKMESKIIEDLGADSLDVVELIM
                     ALEEKFEVEIPDSDAEKLIKIEDVVNYIDNLKK"
     gene            2545..3213
                     /gene="tenA"
                     /locus_tag="ACJFD7_001464"
     CDS             2545..3213
                     /gene="tenA"
                     /locus_tag="ACJFD7_001464"
                     /EC_number="3.5.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050334 - thiaminase activity [Evidence
                     IEA];
                     GO_process: GO:0006772 - thiamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HGG0860251.1"
                     /translation="MMLFSNLIKENQKIWDAYLHHDFVKKLEDKSLKQENFLFYLKQD
                     YIYLLNYAKCYARLALNSNTAKELRFAMKFQNYIVEGEMELHRAILSLGINADELDIK
                     DESLVNIAYSRYMLSVGENGDFLDMLVALSACAIGYAKIGAEIINRLKNENLKDHPYK
                     EWILTYGSENFQNEAKEFEDFVNSYTSSVSAQKFQKLSEIFHTVTRLEVAFWEHSLRM
                     ELNL"
     gene            complement(3237..4094)
                     /gene="sdhE"
                     /locus_tag="ACJFD7_001465"
     CDS             complement(3237..4094)
                     /gene="sdhE"
                     /locus_tag="ACJFD7_001465"
                     /EC_number="1.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="8-methylmenaquinol:fumarate reductase membrane
                     anchor subunit"
                     /protein_id="HGG0860252.1"
                     /translation="MQKEYAFFPGCVLSQAAKESKISLEAIAPILGWKLNEIKGWSCC
                     GASQAQCVDPIATLVANARNIALAEEMKMPMLTTCSTCMLTLAKAKNTLDKGAKERIN
                     TFLVKGGMKYQGSTPITSLLWELYEDLDNLKSKVKKPLSNLKVALFYGCHSLRPEDTF
                     GKKESSTNPKSFESVVEVLGAKIVPFEKRLDCCGFHASYPAEKSVKKMSSQIVNNASE
                     NQADCVVTPCPLCQMQLDIYQERFQDYTNSKARLPIIHLSQLVGLALGLSKETVGLDY
                     NIIDASKIA"
     gene            complement(4098..5063)
                     /gene="sdhB"
                     /locus_tag="ACJFD7_001466"
     CDS             complement(4098..5063)
                     /gene="sdhB"
                     /locus_tag="ACJFD7_001466"
                     /EC_number="1.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="8-methylmenaquinol:fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HGG0860253.1"
                     /translation="MKIIIDRFNGKEKYEQSYDIDDKDIQGKTLLSLLLFIKKTKDIT
                     LNFTASCQSAICGACAVRVNGHSYLACDTKMQDLLKEYDNPSSIRISPLGNFRVISDL
                     IVDWEPSIENLRKIRPAMVAKNEFSAEKGCKQSQEEFDRISKQWDCILCGSCASECNK
                     LEADSSDYMQPFVFTHAWRAAADSRGKDPMLHVKPSVMNGLWLCVHCQECADRYPKGI
                     SSVSDIANLRVMAIKKGLNEGLGPDHAEAFYKDLVEGSGRLNEIYLALRSEGVIGSMG
                     KTDIAFKLMRAGKMNPMHVFGEGEIEGHKDLVKMIKAAQEAAVKE"
     gene            complement(5060..6896)
                     /gene="sdhA"
                     /locus_tag="ACJFD7_001467"
                     /pseudo
     CDS             complement(5060..6896)
                     /gene="sdhA"
                     /locus_tag="ACJFD7_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343874.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="8-methylmenaquinol:fumarate reductase
                     flavoprotein subunit"
BASE COUNT         2277 a         1489 c          935 g         2350 t
ORIGIN      
        1 taaaaaagcg aagtaaaagc ctaagcctct tgataggctc caagctttaa aattttctgc
       61 atacgatttg cagaaagttc tcgtacatca atattttcaa gttcatttag agattttttt
      121 acataatcag caatagctac tgctgcagcc tctttattgc gatgtgcacc atttgtaggc
      181 tcatctataa catcatcaat taaaccttga gattttaaat catcagccgt taccttcata
      241 gccttggttg cagcttcact ttttgcagga tcattccaaa gtattgcagc acaaccttca
      301 ggagaaatta ctgaaaaaac agaatttttc atcattgcaa gtttatctgc aacccctata
      361 gctaacgccc cgccactacc gccttctccg ataactatag caatggtcgg tattttcaaa
      421 tcacttaatt catataaatt tctagcgata gcttcacttt gtcctctttc ttcagcacct
      481 attccaggat aagcacctgg agtatctatc aaaaataaaa taggaatttg aaatttctct
      541 gcaagtcttg ctactcttaa ggctttgcga tatccttcag gatgtggcat cccaaaattt
      601 ctagcgattt tatcttttgt tccacgtcct ttttgctcac caattacaat tatttttttc
      661 tctcctaaat aacccataaa acaaacaata gcaggatcat ctctaaaggc acgatcacca
      721 tgtatttcgt gagcgtcatt taaaataagt tcaatatagt caagagcata agggcgatct
      781 ggatgacgcg ctaattgcaa acgctgaaaa tcacttaaat tcttataagt tttagaaatt
      841 tctttttcaa gatttttctt taaaatcgat acagcttcag tatctccttt aatctgagca
      901 ttgataatgt cctcgtcaat ttgctgaata tttttttcaa aatctaaata agaagccata
      961 ttaatctact tttttaaata caacacagcc atttgtgcca ccaaaaccaa aagaattact
     1021 catcaccact tttaaatcta cttttcttga tatatttgga atataatcaa gatcacattc
     1081 atcatctttt acaagctgat tgattgtagg tggaactacc ccatctctta aagccataac
     1141 actaacaact gcttcaattg cacctgcagc acccaagcaa tgacctgttt gtcctttggt
     1201 ggaacttata agcgggatat tattgccaaa aagctcttta attgctgctg tttcattttt
     1261 gtcatttaca ggggttgaag ttccatgcgc attgatataa tctacctttg gattccctgc
     1321 catatttaaa gcttttttca tagctcttaa aggcccatct aaagttggtg aagtaatatg
     1381 atgcgcatct gcactttctc caaatccaat taattcagca taaatcgtag caccgcgttt
     1441 tttagcctct tcatattcct caaaaactaa agctccagca ccttctccca tgacaaaacc
     1501 atctctttct ttgtcaaatg gtcttgaagc atgctgtgga tcttcatttc tagttgataa
     1561 agctttcatt gaagcaaaac cacctatacc tacaggacaa atcgcagctt ctgcacctat
     1621 gactaacatc tttttagcat ttcccaaagc tatactttta taagcttctc ctatagcatg
     1681 agttcctgct gcacaagctg taacacaaga aatatttggc cctttaagtc catgctctat
     1741 agaaatcaaa cctcctaaca tatttacaag tgctgaaggt atgaaaaaag gggaaatttt
     1801 acgcggacct cgctcggaac aaataatgga atttttttct atgttaggca aacctccaat
     1861 accagaagcc gaaacaatgc caaattcttc tttatctaat tcttcactaa atccagcatc
     1921 ctgcattgct tctcttgctg ctttaattcc aagttgtatg aaacggtcaa ttttttttac
     1981 ttctttgcca tcaacaacct ctaatggatc aaaattttta acttcagctg caatttgaac
     2041 aggaaagtcc gtagcatcaa aaagagtaat tttatttact ccgctttctc cattgcaaat
     2101 tgctttaaat gaactttctt tatctaaacc aagggcattg atcataccaa tacctgtaac
     2161 tacaactctt ttcaagaata agctccttgc aagaaaaaaa attatttttt tagattgtca
     2221 atataattta caacatcttc aattttaatt aatttttcag catcactatc tggaatttct
     2281 acttcaaatt tttcttctaa agccataata agctctacaa catctaaaga atcagcacct
     2341 aaatcttcaa taatttttga ttccatttta actgcatctg catcaatact taattgctct
     2401 actactactg cttttacatc atcaaatgtt gccatttgtt ctccttcaaa aaattaaaat
     2461 aaagcgtatt ttactataaa aagcttaaaa tatttatagt ttttcattat acttgaaaat
     2521 aaaatattaa aacataaagg aaaaatgatg cttttctcta atttaatcaa agaaaatcaa
     2581 aaaatttggg atgcttatct acatcatgat tttgttaaaa aattagaaga taaaagccta
     2641 aagcaagaaa attttctttt ttatctcaag caagattata tttatttgct taattacgca
     2701 aaatgctacg caaggttagc actcaactca aataccgcaa aagaacttcg ttttgctatg
     2761 aaatttcaaa attatatagt tgaaggagaa atggaacttc atcgtgcaat tttatctctt
     2821 ggcattaatg cagatgaact cgatataaaa gatgaaagtt tagtcaatat agcctattcg
     2881 cgttatatgt taagcgtagg tgaaaatgga gattttttag atatgttagt tgctcttagt
     2941 gcttgcgcta taggctatgc aaaaataggt gctgaaatta taaatcgttt aaaaaatgaa
     3001 aatttaaaag atcatcctta caaggaatgg attttgacct atggaagtga aaattttcaa
     3061 aatgaagcta aagaatttga agattttgtt aattcttata cttcaagtgt tagtgcacaa
     3121 aaattccaaa aactcagcga aatttttcat actgtaacac gcttggaagt ggctttttgg
     3181 gagcattctt taagaatgga attaaatctt taaacatggg ctttttgccc atgtttttat
     3241 gcaattttac ttgcatcaat aatattataa tctaaaccaa ccgtttcttt agaaagtcct
     3301 aatgcaagtc ctactaattg tgataaatga ataataggca atcttgcttt agaattagta
     3361 taatcttgaa atctttcttg atagatatca agctgcattt gacaaagtgg acaaggtgtt
     3421 acaacacaat cagcttgatt ttcacttgca ttattgacaa tttgactaga catttttttc
     3481 acagattttt ctgcaggata agaagcatga aaaccacaac aatcaaggcg tttttcaaaa
     3541 ggaactattt tagcccctaa aacttctact acactttcaa aactttttgg attggttgaa
     3601 ctttcttttt taccgaaagt atcttcaggt cttaaactat ggcaaccata aaataaagct
     3661 acttttaaat ttgaaagcgg ctttttcacc ttgcttttta aattatccaa atcctcataa
     3721 agctcccaca aaagacttgt aataggcgtt gaaccttgat atttcattcc accttttact
     3781 aaaaaagtat tgatgcgttc ttttgcaccc ttatcaagag tattttttgc tttagctaaa
     3841 gttagcatac aagtactaca agttgtaagc attggcattt tcatctcttc tgctaaagca
     3901 atatttcttg cattagctac caaagtcgca ataggatcaa cacactgcgc ttgagaagcc
     3961 ccacaacaac tccacccctt aatttcattc aacttccaac ccaaaatagg tgcaatagct
     4021 tcaagtgaaa ttttagattc ttttgcagct tgagataaaa cacaacctgg aaaaaaagcg
     4081 tattcttttt gcatatttta ctccttaaca gcagcttctt gtgccgcctt tatcatttta
     4141 accaaatctt tatgcccttc tatttcaccc tcgccaaaaa catgcatagg attcattttt
     4201 cctgcacgca taagtttaaa agctatatct gttttaccca tagaacctat aacaccctca
     4261 gaacgcaaag caagataaat ttcattcaag cgtcctgaac cttcaactaa atctttataa
     4321 aaagcttcag catgatcagg ccctaagcct tcatttaaac cttttttaat cgccatcact
     4381 cttaaatttg ctatatcact tactgaactt ataccctttg gataacgatc agcgcactct
     4441 tgacaatgaa cacaaagcca aagtccattc attacgctgg gttttacatg caacatagga
     4501 tccttacctc gagagtccgc cgctgcacgc caagcatgag taaaaacaaa aggttgcata
     4561 taatcgctac tatctgcttc taatttatta cactctgaag cacagctacc acataaaata
     4621 caatcccatt gcttgctaat acgatcaaat tcttcttgac tttgtttaca gcccttttcc
     4681 gctgaaaatt cattttttgc caccatggca ggacgaattt ttcttaaatt ttctatagaa
     4741 ggttcccaat ccacaattaa atcagaaatt actctaaaat ttccaagcgg agaaatacgt
     4801 atacttgaag gattatcata ttcttttaac aaatcttgca ttttagtatc acaagcaaga
     4861 taagaatgcc cattcacacg aactgcacaa gccccacaaa ttgcagattg acaagaggcg
     4921 gtaaaattta aagtaatatc ttttgttttt ttgataaaaa gcaaaagaga gagcaaagtt
     4981 tttccttgta tatccttatc atcaatatca taactttgtt catatttttc cttgccatta
     5041 aaacgatcta tgataatttt cattgtactc tccttccatc aagtgaaaac tcagttacca
     5101 cgacatcttt ataactaagt tttaattcat cattttctaa atttacaatg ctatgtttta
     5161 agaaattttt atcatctcgc tttggataat cttctctagt atgagcccca cggctttcaa
     5221 gtctatttct agctgctaaa caagcacagc gagaaagtaa aatcaaatta ccaagctcta
     5281 cataatctgt aaaagcagta ttcatcactt cattaggatt tggaatacga attttttcat
     5341 atctcgcttg tatatcttct aatttttttt gctagaagat cgagtttttc ttgagttcta
     5401 aaaatcccca tattatccca attttgactt cctagctctt ctcgcaattc atacatttct
     5461 tgaccatttc cgccattatt tgtaatttct ttaaatctaa cctgccattt ttgagcaagt
     5521 tcatgagttt ttgccccttt tccaaaactt gcatctttag cataatttgt cgcaccaatg
     5581 cctgctaaat gccctgttac aactgcatcg gctaaagaat ttccccctag tctattagct
     5641 ccatgtatag aaatgcaaga agcttctcca cctacataaa ttccagcaat tttagtactc
     5701 atatcttcaa atttagccac ttcaattcca cccatagaat aatgtgccgt tggacggata
     5761 ggtacaggag tatctactaa atcaatattt tcaaaaagca ttgcagtgtg acgaattttt
     5821 ggtaaatctt ttaaaatttt ttcttttcct aagtggcgta catcgcacaa aacataagct
     5881 ccaagtccct cgccataacc tctaccttca cgaatttctg tttctatagc acgcgcaacc
     5941 acatctcgcg gtgcaagctc cattttttca tggtaatttt tcataaaacg ctcaccacga
     6001 ttatttaaaa gatatccccc ttcaccgcgc gccgcttctg taataagagt tccaccattt
     6061 gcaactcctg ttgggtgaaa ttgtatcatc tcaggatctt caaaaccaag tcctgctcta
     6121 agagcagctg ccacaccatc tcctgtggca ataaaaggag ttgaagttct attataaaat
     6181 atccttgtgt atccccctgt agcaatcacc aaagctttgc ataacacagg ataaattcca
     6241 ccgctttgta tatctcttaa aacgacaccc tcgcattttc catccacaac acctatatcc
     6301 aaaagttcat gatccattaa aaatttcaca ccactactaa tagcatcatc taaacaagaa
     6361 tgcattaaaa tatggcctgt tttatctgca gaatagttac agcgtttctt ggaagctcct
     6421 cccattaaac gctgagttac tccaccttgc tcatttcttg aaaacaaggt tcctataaaa
     6481 tccatattaa aaatagcctt tccagctaat tcgcaaaatt ttaaagccgc ctcttgatct
     6541 accaaataag ctccgccttt aatagtatca taagcatgta atttatagga atctccatta
     6601 gaaaaatcag taactccatt aattccaccc tctgccatac aagttgcgtt acgcgatggc
     6661 atcatctttg tagctactac aacgcttaat tttggatttt cttttctcac tgcggctgca
     6721 gcacgcaaac ctgctccacc tgatccaatt accaaaacat cgcaagaagg taaatttgta
     6781 tctttatcca tcttagatga atcatctaaa gcataaactc cacttgaact tgcaactaaa
     6841 gctcctacac taatacaggc tgtttttata aaatctcttc tagaaaattc acccatatca
     6901 ttctccttat ttaaaaaaat taataataat ttttaatgta agtcgatctt acataaccgc
     6961 atgccaaaaa tccaaaaaca aactctcctt tcaatataaa atggattaaa aacaaattta
     7021 taatttagta aatataaaaa agcataagat a
//
LOCUS       DBBXPZ010000081         6777 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.083, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000081 DBBXPZ010000000
VERSION     DBBXPZ010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6777)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6777)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6777
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.083"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..484
                     /gene="tssB"
                     /locus_tag="ACJFD7_001468"
     CDS             <1..484
                     /gene="tssB"
                     /locus_tag="ACJFD7_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="type VI secretion system contractile sheath
                     small subunit"
                     /protein_id="HGG0860254.1"
                     /translation="SDGSYAPKERINITYKAKTNGQNEDVELPLKLMVMANLKGKNET
                     PLEEREILQINKINFDQVMRKLNITTSFSVKNTLGTGAEELDVKLNIASMKDFSPDSL
                     AKQIPELNKLLQLREALMALKGPMGNIPDFRKAVLEALKNEKTKEKLLLEIKQEEQGN
                     "
     gene            486..1940
                     /gene="tssC"
                     /locus_tag="ACJFD7_001469"
     CDS             486..1940
                     /gene="tssC"
                     /locus_tag="ACJFD7_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033104 - type VI protein secretion
                     system complex [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system contractile sheath
                     large subunit"
                     /protein_id="HGG0860255.1"
                     /translation="MANTKAVDMPIIEQIMEKSKYSKTDESYSIAKRGVAEFISEIVK
                     SDNAEEKINKFALDEMIAHIDYLLSKQMDEVLHNEEFQKLESTWRGLRFLVERTDFNE
                     NIKIDLFDIRKEEALEDFENNPDITQSVVYKNIYSSEYGQFGGEPIGAIIGDYQLGSA
                     SPDMTFLNKMASIAAMSHSPFLTSFGPKFFGLDDYSELANIQDLQGLLEGPQYTRWRT
                     FRENEDSKYTGLLVTRFLARSPYDPEENPIKSFNYKENVHASHNHLLWANSSYTFCTR
                     LTESFAKYRWCGNIIGPKSGGTVKDLPTYLYENFGTIQSKIPTEVLITDRREYELAEA
                     GFITLTLRRDSNNAAFFSANSPLKPKLFQNTPEGKEAETNYRLGTQLPYIFLISRLAH
                     YLKVLQREEIGSWKERSDIENGLNEWIRQYISDQENPPSEVRSRRPFRAAQVKVSDIP
                     GEPGWYKIGLSVRPHFKYMGGNFELSLVGKLDKE"
     gene            1943..2335
                     /gene="tssE"
                     /locus_tag="ACJFD7_001470"
     CDS             1943..2335
                     /gene="tssE"
                     /locus_tag="ACJFD7_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssE"
                     /protein_id="HGG0860256.1"
                     /translation="MSLLDKLIHNLDEQNIHIPFYQNDFEDVKNNIKVLLNAKINDCY
                     AVKNLGMPNMADINLNSNELCVSMAKEIRKLIDNYEKRICVVSITYDNNLSPWQLSFI
                     VKCFFQDDRFKEFNIEIIFKNNRYCEVK"
     gene            2332..4053
                     /gene="tssF"
                     /locus_tag="ACJFD7_001471"
     CDS             2332..4053
                     /gene="tssF"
                     /locus_tag="ACJFD7_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssF"
                     /protein_id="HGG0860257.1"
                     /translation="MKDNIFYYQKELEYLYEKREYFIKNYPKLTPFLAYDSKDPDIER
                     IIENLAILSSKIHQELDENIPHIAESLINIVSPNYTNPLPSLCMQEFKFEQNSKENNL
                     IIPKGTLIKSKPIDKCVCEFKTVYDVYLYSISISEVFISSKNQDYTFNLTLQVNKAET
                     KICDLGLEKINLYLGNDTYMSSTLLLYMHSYLKELKIQSLDTDEEFFLNTYNIEKIGL
                     NPDESSLSYNDLGFEAFSLLREYFFMPHKFNFLRINGLDILNNCQGKTINIEFKFSKP
                     FPANCIFRKELLSLSMTPIINIFTKSAEPLINNHKKDSYRIFVDRSQPKAYEIIQTLQ
                     VKAHNSEGGKRLLKNYKSFERFEFLKDNQKDFYSVNTKKNSKGEVFSEISFFSSYIMD
                     ETISIDLLCSNGDLPSKLKIGDINTCDLKGVDTKNVEIPSETRRCSVDGNLLWKLVSV
                     LSFSYQTILSKKAFFGVLESYSFLDNQSNWKIYKLLQESIIDIQSKSTYLIDENITKK
                     GTLAIFSIKDSKFYTLGEVYLLGLIISKFLASFASINSFCELKIRCLDSKEILHYPAS
                     FGKKALI"
     gene            4050..4958
                     /gene="tssG"
                     /locus_tag="ACJFD7_001472"
     CDS             4050..4958
                     /gene="tssG"
                     /locus_tag="ACJFD7_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssG"
                     /protein_id="HGG0860258.1"
                     /translation="MNNLTSYSFFKLIKKLEKDYGRKNIFLRTNKSLKHPNKDIEKII
                     FSEHEQSVIELFINFMGLHGVSSQLPSFMLDKLSRNEDGDQGWTLFFDFFNHYLLWIF
                     FDVISLKNYPRSFNENFKDSISKILFSMLGIKEYDIAKKYLPFAPLLLSLRRPKTHIE
                     RVLQVNFKLKDKLSIIENLPHQILISNSQKNNLGIKNNILGNNFILGDKFISYQNKIA
                     IYIKDISYQEAVKFMPNGTKHDDLKNSIMFLTNNEFCVDLYLKINYSSEMKFVLGEEN
                     TAKLGWAKILGNTQKKYTIVYMKLCE"
     gene            5109..>6777
                     /locus_tag="ACJFD7_001473"
     CDS             5109..>6777
                     /locus_tag="ACJFD7_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="contractile injection system protein, VgrG/Pvc8
                     family"
                     /protein_id="HGG0860259.1"
                     /translation="MSLNSYMSLNISNSTSNPLPFKITKALIKESLEELFSIECEGFF
                     ESLEQDLFSLNTLTNASSHPSTPTTFNFHPNVLIDQEAILSIHNPYENNTLNFDNNEV
                     KNYKGIITYIKYLGINHESALNINDSTSNTKQIQYKHFFSFKLQSVLIRLSLNKANRI
                     YTHTNIIEVIKQTLGFYQDILHKEIDYSNIHFNYEEQELISQYNESDLDFITRLSHNN
                     GIFFYEDENTIYFCDVYKNVKNKEIEYNPNINNILNQACISSIYKEQSLRTNSFTHSS
                     INANTPLNLLSLHSSKVPYEQELNNKACYNEHFYESEYSFTKSIDLKTKPSLKEKRAL
                     VLNESLLAKSNIYHLSLGDFITLNYKEFNHQEEIKNQDEEKQDKASLLKDFIIIANTQ
                     ILIDDAILANSINTNDHLNLKDLNLNKSYSNTLTLLKKNIIFTPSFKAKPKAPNSTQG
                     IVIGESKDIESERNTIYTDEHGRVKVRINLYANQEELDNDTFIANDIDTNSSNLSSNT
                     YKSYHHTPFLRVASHIASNHSGFFHTPRIGDEVIISFLDDDIDKPYVS"
BASE COUNT         2655 a          885 c          980 g         2257 t
ORIGIN      
        1 gtcagatgga tcttatgctc caaaagagcg gattaatatt acatataaag ctaaaactaa
       61 tggacaaaat gaggatgtgg agttgccgtt aaaattaatg gtaatggcaa atttaaaagg
      121 aaaaaacgaa actcctttag aggaaagaga aattttgcaa attaataaga ttaattttga
      181 tcaagtcatg agaaaactca atataacaac aagttttagc gtaaaaaaca ctcttggaac
      241 aggagctgaa gagcttgatg ttaagctcaa tattgctagt atgaaggatt tttctccaga
      301 tagcttagct aaacaaatac ccgagctaaa caaattattg cagctaagag aagcattaat
      361 ggctttaaaa ggtcctatgg gtaatattcc tgattttaga aaagctgttt tagaagcgtt
      421 aaaaaatgaa aaaactaaag aaaaattact tttagaaatt aaacaagaag agcaaggaaa
      481 ttaagatggc aaatactaaa gcagttgata tgccaattat tgagcaaatt atggagaaaa
      541 gcaaatactc taaaaccgat gaaagttata gtattgctaa aagaggtgtt gctgaattta
      601 tttcagaaat tgtaaaaagc gacaatgctg aagaaaaaat caataaattt gcacttgatg
      661 aaatgatagc ccatattgat tatttactct caaaacaaat ggatgaagtt ttacataatg
      721 aagaatttca aaaacttgaa tctacttggc gtggacttag atttctagtt gaaagaactg
      781 attttaatga aaatataaaa attgacctat ttgatataag aaaagaagaa gctttagagg
      841 attttgaaaa caatccagat ataacacaaa gcgttgttta taaaaatata tattcttcag
      901 aatatggaca atttggagga gagcctatag gagcaatcat tggagattat caacttggat
      961 cagcaagtcc tgatatgact tttttaaata aaatggctag tattgcggct atgagtcatt
     1021 ctcccttttt aacatctttt ggaccaaaat tttttgggct tgatgattat tctgaacttg
     1081 cgaatattca agatttgcaa ggtttgctag aaggtcctca atatacaagg tggagaactt
     1141 ttagagaaaa tgaagactct aaatatacag gcttactagt gacaagattt ttagcaagaa
     1201 gcccttatga tcctgaagaa aaccctatta aaagctttaa ctataaagaa aatgttcatg
     1261 cttcgcataa tcatttattg tgggctaatt cttcgtatac tttttgtaca agattaacag
     1321 aaagctttgc taaatataga tggtgtggaa atattatagg accaaaaagt ggagggactg
     1381 ttaaggatct gcctacttat ctttatgaaa attttggaac tatacaatca aaaataccta
     1441 cagaagtttt gattacagat aggagagagt atgaacttgc tgaagcaggt tttataacct
     1501 taacattaag aagagatagt aataatgcag catttttttc agcaaattct ccgttaaaac
     1561 caaaattatt tcaaaatacc ccagaaggta aagaagctga aacaaattac agattaggaa
     1621 ctcaacttcc atatatcttt ttaatttcaa gattggcgca ctatttaaag gttttacaac
     1681 gagaagaaat agggagctgg aaagaaagaa gcgatattga aaatggactt aatgaatgga
     1741 ttagacaata tatttccgat caagaaaatc caccttctga agtaagaagt cgtcgtccat
     1801 ttagagcagc acaagtgaaa gttagtgata taccaggaga gccaggatgg tataaaatag
     1861 ggctaagtgt ccgacctcat tttaaatata tgggcggtaa ttttgaactt tctttagtag
     1921 gaaaattaga taaagaataa taatgtcctt gctagataaa ctgatccata atttagatga
     1981 gcaaaacatt catattccat tctatcaaaa tgattttgag gatgtaaaaa acaatataaa
     2041 ggttttgctc aatgcaaaaa ttaatgattg ttatgctgta aaaaatttag gaatgcctaa
     2101 tatggctgat attaatctta actctaatga attatgcgta tcaatggcca aggaaataag
     2161 aaaactaatt gataactatg aaaaaagaat atgtgtagtt tctatcactt atgataataa
     2221 tttaagtcct tggcaacttt cttttattgt aaaatgtttt tttcaggatg atcgttttaa
     2281 agaatttaat atagaaatca tctttaaaaa caatagatat tgcgaggtta aatgaaggat
     2341 aatatttttt attatcaaaa agagcttgaa tatctatatg aaaaaagaga gtattttata
     2401 aaaaattatc caaagttaac accatttttg gcatatgata gcaaagatcc tgatatagaa
     2461 agaattattg aaaatttagc tattttaagc tctaaaatcc atcaagagct tgatgaaaat
     2521 ataccacaca ttgcagaatc tttgattaat attgtttctc caaattatac aaatccttta
     2581 ccttctttat gcatgcaaga atttaaattt gaacaaaata gtaaagaaaa taacttaatt
     2641 attcccaaag gaactcttat taaatcaaaa ccaatagaca aatgtgtttg tgaatttaaa
     2701 acagtatatg atgtttatct ttattctatc tccatcagcg aagtttttat atctagtaaa
     2761 aatcaagatt atactttcaa tttaactttg caagtcaata aggcagaaac aaaaatatgt
     2821 gatttgggtt tggaaaaaat taatttatat ctaggcaatg atacctatat gtctagtact
     2881 ttattattat acatgcattc ttatttaaaa gaattaaaaa ttcaaagttt agatactgat
     2941 gaagaatttt ttcttaatac ctataatatt gaaaaaatag gattgaatcc agacgaaagt
     3001 agtttatctt ataatgattt aggttttgaa gcattttcct tactaagaga atattttttc
     3061 atgccacata aatttaattt tttaagaatc aatggtttgg atattttaaa taattgtcaa
     3121 ggaaagacaa ttaatattga atttaaattc tctaaaccat ttcctgcaaa ttgtattttt
     3181 agaaaagaat tactttcttt aagcatgaca cctattatca atatctttac aaaaagcgca
     3241 gaacctctta taaataatca caaaaaagat agttatagaa tttttgtgga tagaagccaa
     3301 cctaaagctt acgaaatcat acagacacta caggttaaag cacataatag tgaaggcggc
     3361 aaaaggttat taaaaaacta taaaagtttt gaacgctttg aatttttaaa agataatcaa
     3421 aaggattttt atagcgtaaa tactaaaaag aattccaaag gagaggtatt tagcgaaatt
     3481 tctttctttt cctcttatat aatggatgaa actataagta ttgatctttt gtgctccaat
     3541 ggagatttac cttcaaaatt aaaaataggt gatattaata cctgcgatct aaaaggtgtc
     3601 gataccaaaa atgtggaaat tccaagcgaa acaagaagat gtagtgttga tggtaattta
     3661 ttatggaagc ttgtttctgt gttatctttt tcatatcaaa caatattgag caaaaaagct
     3721 ttttttggtg tgttggaaag ctatagcttt ttagataatc aatcaaattg gaagatttat
     3781 aagcttttgc aagaatctat aatcgatatt caaagtaaaa gcacttattt aatagatgaa
     3841 aatatcacaa aaaaagggac cttagctatt tttagtatta aagattcgaa gttttacact
     3901 ttaggcgagg tatatttatt gggattgatt atatctaaat ttttagcttc ttttgctagt
     3961 attaactcct tttgtgagtt aaaaataaga tgccttgact caaaagaaat tttacattac
     4021 cctgcttctt ttggaaaaaa agctttaata tgaataatct tacttcatat agttttttta
     4081 aattaataaa aaaattagaa aaagactatg gaagaaagaa tatattttta agaacaaata
     4141 aaagtttaaa acatccaaat aaagatatag aaaaaatcat tttttcagaa cacgaacaat
     4201 cagttataga attgtttata aatttcatgg ggctacatgg agtctcttca caacttcctt
     4261 catttatgct agataaactg tcaagaaatg aagatggcga ccaaggttgg actctattct
     4321 ttgatttctt taatcattat ttgctttgga tattttttga tgtaataagc ttaaaaaatt
     4381 atccacgatc ttttaatgaa aattttaaag attctatttc aaaaatttta tttagcatgt
     4441 tgggaattaa agaatacgat attgcaaaaa aatatttacc atttgcacct ttactactaa
     4501 gtttaagacg acctaaaaca cacattgaaa gagttttaca agtcaatttt aaacttaagg
     4561 ataaattatc aattattgaa aatttacccc atcaaatttt aatttcaaat tcgcaaaaaa
     4621 ataacttagg aataaagaac aatattttag gaaataattt tatattgggc gataaattta
     4681 tctcttatca aaacaaaata gcgatctata taaaggatat ttcatatcaa gaagcggtta
     4741 aatttatgcc caatggaacc aaacacgatg atttaaaaaa tagcataatg tttttaacaa
     4801 ataatgaatt ttgtgttgat ttatatctta aaatcaacta ttcttcagaa atgaagtttg
     4861 tgttaggaga agaaaatact gccaaacttg gttgggcaaa aattttaggt aatacgcaaa
     4921 aaaaatatac aatagtatat atgaaactat gtgaataagc tgacacaaaa atatgtttaa
     4981 aaaaatcaca acctctcttc acccataaac cataccctaa aataaacttt attttaccca
     5041 ctttatgcta aaataaatca cataagctta taggctatta atcatcaaca accccaaaag
     5101 gatcatcaat gtcccttaat tcttacatga gtcttaatat atcaaattct acttcaaatc
     5161 ccctaccctt taaaatcact aaagccctca tcaaagaaag tcttgaagag cttttttcta
     5221 tagaatgcga aggctttttt gaaagtttag aacaagattt attttcttta aatactttaa
     5281 ccaatgcttc atctcatcca agcaccccta caacttttaa ttttcatcct aatgttttaa
     5341 tcgatcaaga agctatttta agtatccata atccttatga gaataatacc ttaaactttg
     5401 ataacaatga agtaaaaaac tataagggaa ttatcactta tataaaatat ctaggtatta
     5461 atcatgaaag tgctttaaat attaatgata gcacttcaaa tactaagcaa atacaataca
     5521 agcatttttt ttcttttaag cttcaatcag tcttgataag actttcttta aataaagcca
     5581 atcgtattta tactcatact aatattatag aagtgattaa acaaaccctt ggtttttatc
     5641 aagatatctt acataaagaa attgattatt ctaatataca ttttaattat gaagaacaag
     5701 aactcatctc tcaatacaat gaaagtgatt tagactttat tacaagatta agccataata
     5761 atggaatctt tttttatgaa gatgagaaca ctatttattt ttgtgatgtg tataaaaatg
     5821 taaaaaataa agaaattgag tataatccta atattaataa tattttaaat caagcttgta
     5881 tttcttctat ttataaagag caaagcttaa gaactaattc ttttacacat tctagtatta
     5941 atgccaatac tcctttaaat cttttatctt tacactctag taaagttcct tatgaacaag
     6001 aacttaataa caaagcttgt tataatgaac atttttatga gagtgaatat tcttttacaa
     6061 aaagcattga tttaaagact aagccttctc ttaaagaaaa aagagcctta gtattaaatg
     6121 aaagcttact agcaaaaagt aatatttatc atcttagctt aggagatttt atcactttaa
     6181 attataagga gtttaatcat caagaagaaa taaaaaatca agatgaagaa aaacaagata
     6241 aagcttcttt gcttaaagac tttattatta tcgctaatac tcaaatctta attgatgatg
     6301 ccatcttagc taattctatt aatactaatg atcatttaaa tttaaaagat ttaaatttaa
     6361 ataaatctta ttctaatact ttaactttac taaaaaagaa tattatcttt actccaagtt
     6421 ttaaagctaa acctaaagct cctaatagca ctcaaggtat tgttatagga gagagtaagg
     6481 atatagaaag tgagagaaat actatttata ctgatgagca tggaagggtt aaggtaagga
     6541 ttaatcttta tgccaatcaa gaagaattag ataatgatac ttttattgca aatgatatag
     6601 atacaaattc ttctaattta tcaagcaata cttataaatc ttatcatcac actccttttt
     6661 taagagtagc ttctcatata gcaagtaatc attcaggttt ttttcatact ccaagaatag
     6721 gagatgaagt gattatttct tttttagatg atgatataga taaaccttat gtaagcg
//
LOCUS       DBBXPZ010000082         6487 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.084, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000082 DBBXPZ010000000
VERSION     DBBXPZ010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6487)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6487)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6487
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.084"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(1..738)
                     /locus_tag="ACJFD7_001474"
     CDS             complement(1..738)
                     /locus_tag="ACJFD7_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HGG0860260.1"
                     /translation="MIKAFSLLEFVFIILILGIVFNLGSLYLKKDNLLEGAIQILNDI
                     QYTQSLAMMQEGIRVDELAIAKREWFKSRWQIYFIKSAATGYDQTYTIFLDKNGDGNA
                     NLGKTEINIDREIAVDVINHNKLMNSGQSGVISKDDEKTTQRFNLTKRFGIEKVEFKG
                     SCSGFTRLVFDEMGRVYSPLKNANYAYEKTLAKNNSDCIIRLLSKKHALCIVIDTLSG
                     YAYIPDFKTLKSQFVNIKNKNYECSKI"
     gene            complement(731..1957)
                     /locus_tag="ACJFD7_001475"
     CDS             complement(731..1957)
                     /locus_tag="ACJFD7_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860261.1"
                     /translation="MEKIKNYKLIIILLSLDLLALLYGISTLSISADEADIYFGEQGK
                     SLIFSHSLLYYISHFGTFIFGQNDFGLRLPFLFFHFLSCLLLYLLALKYTKTKIDAFF
                     ALLLFVLLPGTVASALLVNAASLVIFLTLAILCAYEYEKKWLFYILLIIVLFVDKSFN
                     ILFLTFFFFGIYKRNAILFTLSLVLFGASISFYGFDTGGRPRGYFLDTLGIFAACFSP
                     LVFVYFFYTIYRLTFQKYKNLLWFLMSVTFVFCLLLSLRQKLFLDDFLPFCVICTPLL
                     IKTLMQSYRVRLPVFRLRYKIFIECSIIFLIFCYFLIVANQLLYYFINNPNRHFANNY
                     HFAKELALALKKQDVLELATAPSLQKRLRFYGIKNSNKFYLKALKQADKYDMDKKIVK
                     VKLGKYEKVYQILNYD"
     gene            2084..2668
                     /locus_tag="ACJFD7_001476"
     CDS             2084..2668
                     /locus_tag="ACJFD7_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HGG0860262.1"
                     /translation="MQTIDQIFQTQIDIKKSTFLSFLCPFKDFKFLIETLKKEHPKAV
                     HFVYAYRVLNDFNQIAEDKSDDGEPKGTSGMPTLNVLRGYDLINAALITVRYFGGIKL
                     GTGGLVRAYSDAANAVINNSSLLSFELKKNITIAIDLKNLNRFEHFLKTYSFNFTKDF
                     KDCKAILHIKLNEKEEQEFEIFCKNFAPFEIEKL"
     gene            complement(2712..3095)
                     /locus_tag="ACJFD7_001477"
     CDS             complement(2712..3095)
                     /locus_tag="ACJFD7_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860263.1"
                     /translation="MQVNYRTISSYEYDAISGQYKQVDKQVEDYSSSGNSDFMDILNK
                     ADEKSSGDALNSSNSFQSNAQNSNSNLSNYAQMSNVYAYRFRQNEGELSMRAQSASVH
                     NDLAQQGANEQSKNNTLLNDLLNAI"
     gene            complement(3172..3507)
                     /locus_tag="ACJFD7_001478"
     CDS             complement(3172..3507)
                     /locus_tag="ACJFD7_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860264.1"
                     /translation="MMAKFRIQYSAGFGHYTQNHKGFGPTIYIEEVVEFDNGKDYFDY
                     IDFYKTYSKSDDTYFHISFLEDRPLSDKEITIRNEYRKMRDENCKKAKEEFIANNELD
                     VEHLPTHHD"
     gene            complement(3497..5074)
                     /locus_tag="ACJFD7_001479"
     CDS             complement(3497..5074)
                     /locus_tag="ACJFD7_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HGG0860265.1"
                     /translation="MVEVKNLTMRFANQLLFENVNLKLVRGQRYGLIGANGAGKSTFL
                     KILSGEIESSSGEIVFDEGLKIAVLGQDQFAFENYTIKDAVMCANKRLYEALKEKEKL
                     YMSEEFTDEINERLGELEIITAEEDPNYDCETRCEKILSSLKIKDFDALMSTLQSADK
                     FKVLLAQVLSLGADVLFLDEPTNNLDLEAIFWLENELLRHEGTLVVISHDRHFLNKIC
                     TRILDVDFKQIRDFAGNYDDWYMASTLLAKQAELKRDKTLKEREELENFIRRFSANAS
                     KAKQATSRAKALEKLELEEIKISSRRDPSIVFRTNREIGNEVLEFKGIGKAYDKQLFS
                     NLELKIEKNDKIALIGANGVGKSTLAKIIANAINPDSGSIHLGATIELGYFPQDASNL
                     ICENLKLYEWLMSEKFKDLDEIRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLML
                     ERPNFLLLDEPDNHLDLESIIALGEALYNFKGVVLCISHDRELVSAFANRIWHLENGK
                     LTDFRGTYQEFLGENDG"
     gene            complement(5197..5730)
                     /locus_tag="ACJFD7_001480"
     CDS             complement(5197..5730)
                     /locus_tag="ACJFD7_001480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860266.1"
                     /translation="MKNILLSLMFVFLFTGCFNNKPKCDDEDVKLTLKSILDNDEWVY
                     VEYGLNEQSLRALRINSNGMDIRDLEAALSTDTLGVLRAHFKPLLDLKDYANEVVYTS
                     FESFITKDSKDKKTSFCMGQLKFTYPQMPNEMREKYSRGALKGVLFDGGEYETQISYS
                     ARFSDDKKQVFVELLDY"
     gene            complement(5730..5990)
                     /locus_tag="ACJFD7_001481"
     CDS             complement(5730..5990)
                     /locus_tag="ACJFD7_001481"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860267.1"
                     /translation="MSEKYTPFEVEPTLLYEKDTYQIVTGKAYTNKDEQFCIGLKSNG
                     FPINSYLIFPPQLSSDLLKSLLGQDGAKNDEIIEFIKIIMEK"
     gene            complement(6033..6425)
                     /locus_tag="ACJFD7_001482"
     CDS             complement(6033..6425)
                     /locus_tag="ACJFD7_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860268.1"
                     /translation="MGDKLPRDGLAAITLKEKFERLSEERKKDVLNQLPMLKLKSPAL
                     VFWVGTFLFSPFGVGRFMIGDMVLGFVRLAFVIIPIIFNIVASESLQNIAYILVIVNW
                     TIWWIVDMFLVGKKLRKQNYEKIANIIQ"
BASE COUNT         2345 a         1150 c          757 g         2235 t
ORIGIN      
        1 ttatatttta gagcactcgt aatttttatt ttttatatta acaaattgac ttttaagtgt
       61 tttaaaatct ggaatataag cataaccact aagcgtatct ataacgatac aaagagcatg
      121 cttttttgat aacaaacgta taatgcaatc tgaattattc tttgctaaag ttttttcata
      181 ggcataattg gcatttttta acggagaata tactctgccc atttcatcaa atactaatct
      241 agtaaatcct gaacaagatc ctttgaattc aaccttctct attccgaatc tttttgtaag
      301 attaaatctt tgtgtagttt tttcatcatc tttactaata actccacttt gacctgaatt
      361 cattaatttg ttatgattga ttacatcaac agcaatttct ctatctatat tgatttcagt
      421 tttacctaaa ttagcatttc catcgccatt tttatccaag aaaatagtat atgtttgatc
      481 ataacctgtg gcagctgatt ttataaaata aatctgccac ctacttttaa accactctct
      541 ttttgcgata gccaactcat caactcttat accttcttgc atcatggcta aactttgggt
      601 atattggata tcattaagaa tttgtattgc gccttctagt aaattgtctt tttttaagta
      661 aagactgcct aaattaaaaa ctatacctaa aataagaatt ataaacacaa attctaacaa
      721 actgaaagct ttaatcatag tttaaaatct gatatacttt ttcatatttt ccaagtttta
      781 ctttaacaat ttttttgtcc atatcatact tatcggcttg ttttaaagct tttaaataaa
      841 acttattgct attttttatt ccataaaatc gcaatctttt ttgcaaactt ggggctgttg
      901 caagctctaa aacatcttgt ttttttaatg ctagcgccaa ttctttagca aaatgataat
      961 tattggcaaa atgacgattt ggattgttta taaaataata caataattga ttagcgacga
     1021 ttaaaaagta acaaaatatc aaaaaaatta tagaacattc tataaagatt ttatacctta
     1081 atcgaaaaac tggtaatctc accctataac tttgcattaa agtttttata agcaaaggag
     1141 tgcaaataac acaaaaaggc aaaaaatcat ctaaaaaaag tttttgtctt aaagaaagca
     1201 acaaacaaaa tacaaatgtt acgctcatta aaaaccataa taaattttta tatttctgaa
     1261 aagtcaaacg ataaatagta taaaaaaaat acacaaaaac caaaggagaa aaacatgcag
     1321 caaaaattcc taaagtatct aaaaaataac ctcttgggcg accacctgta tcaaaaccat
     1381 aaaaactgat actcgctcca aacaaaacaa gagataaggt aaataaaata gcatttcttt
     1441 tataaatccc aaaaaagaaa aaagttaaaa ataaaatatt aaaagattta tcaacaaata
     1501 atactataat caataatata taaaaaagcc attttttttc atattcgtaa gcacataata
     1561 tagcaagggt taaaaaaatc accaaagatg cggcattaac cagtaaagca cttgcaacag
     1621 tacccggcaa taaaacaaat aacaataaag caaaaaaagc atcaatttta gttttagtat
     1681 attttaaagc tagcaaatac aaaagcaaac aacttaaaaa atgaaaaaat aaaaaaggaa
     1741 gtcttaaacc aaaatcattt tgcccaaaaa taaaagttcc aaaatgagat atataataaa
     1801 gcaaactatg ggaaaaaata agtgatttac cctgctcacc aaaataaata tcagcttcat
     1861 cagcactaat actcagtgtt gaaattccat aaagcaaagc caacaaatca agactaagta
     1921 aaatgatgat aagtttataa tttttgattt tttccataat gaaaatttta caaaattaaa
     1981 cttaaaatat caatgcaaat catacaaata tcaaatatct taaaaattaa catcaaattg
     2041 attttagttt ttataagtat aattttaaac aaaaaaggca aaaatgcaaa ctattgatca
     2101 aatttttcaa acacaaatcg atattaaaaa atctactttc ttatcttttc tttgcccttt
     2161 taaagatttt aaatttttaa tagaaacact aaaaaaagaa catccaaaag ccgttcattt
     2221 tgtctatgct tatcgtgttt taaatgattt taatcaaatt gcagaagata aaagtgatga
     2281 tggagagcct aaaggaactt ctggaatgcc aactttaaat gttctaaggg gctatgatct
     2341 tatcaatgcg gctttaatca ctgtaagata ttttggtggt ataaaacttg gtacaggggg
     2401 acttgtaaga gcctatagtg atgcggcaaa tgccgtgatc aataattctt ctttactttc
     2461 atttgaattg aaaaaaaata taaccattgc tattgattta aaaaatttaa atcgttttga
     2521 acatttttta aaaacttatt cttttaattt cacaaaagat tttaaggatt gcaaagctat
     2581 attacatatc aaattaaatg aaaaagagga gcaagaattt gaaatttttt gtaaaaattt
     2641 tgcacctttt gaaatagaga aattataaat tcttgcaagt aaatacaaaa gctccaaaat
     2701 ggagcttttg attaaattgc gttcaataaa tcatttaaca aagtattatt cttactttgt
     2761 tcatttgcac cttgttgcgc aagatcattg tgaacgctag cactttgagc tctcatagac
     2821 aactcgcctt cattttgtct aaaacgataa gcgtaaacat ttgacatttg agcataatta
     2881 cttaaatttg aatttgagtt ttgcgcattg ctttgaaaac tattgctaga atttaaagca
     2941 tctccgcttg acttctcatc cgccttattt aatatatcca taaaatcaga atttccagat
     3001 gaagaataat cttcaacctg tttatccacc tgtttatact gaccactaat agcatcgtat
     3061 tcatacgagc tgatcgttct ataatttacc tgcatagttt tctcctttca aaatatgcaa
     3121 aaactataca agcaaaaagt attccttttt ttatgtaaaa attaatgttt ttcaatcatg
     3181 atgagtaggc aaatgctcca catcaagctc attattggct ataaattctt ccttggcttt
     3241 tttacagttt tcatcacgca ttttgcggta ttcattgcga atcgtgattt ctttatcgct
     3301 tagaggtcta tcttctaaaa aactgatatg aaaataagta tcatcgctct ttgaataagt
     3361 tttataaaaa tctatataat caaaataatc cttgccatta tcaaactcta cgacttcttc
     3421 tatataaatc gtaggcccaa aacccttgtg attttgcgta tagtgcccaa aacctgcgct
     3481 gtattgaatt ctaaatttag ccatcatttt ctcctaaaaa ttcttgataa gttccacgaa
     3541 aatctgtaag cttaccattt tctaaatgcc aaattctatt agcaaaagca gaaactaact
     3601 ccctatcgtg gctgatacaa agcactacac ctttgaaatt atacaaagct tcacctaatg
     3661 caataatact ttcaagatct aaatggttat caggttcgtc taaaagcaag aaattcggac
     3721 gctctagcat taaacgagaa agcattaaac gatgtttttc acccccactt aaacttgctg
     3781 ccattttttc ttgatcgctg ccactaaaaa gcattctacc taaacacttg cggatttcat
     3841 ctagatcttt aaatttttca ctcatcagcc attcataaag tttcaaattt tcacaaatta
     3901 aattacttgc atcttgagga aaatatccaa gctctatagt tgccccaaga tgtatagatc
     3961 cactatctgg atttatagca ttggcgatga tttttgccaa agtacttttg cccacaccat
     4021 ttgccccgat caaagcgatt ttatcatttt tttctatttt tagctccaaa tttgaaaaca
     4081 attgtttatc ataagccttg cctatacctt taaattctaa aacttcatta cctatttcac
     4141 gattggttct aaaaactatg ctaggatctc tacggcttga aattttaatc tcttcaagct
     4201 ctagtttttc aagtgcctta gcacggcttg tggcttgttt tgccttagaa gcatttgcgc
     4261 taaaacggcg aatgaaattt tctaattctt ctctttcttt taaggtttta tcacgtttaa
     4321 gctcagcttg ttttgccaaa agcgttgaag ccatatacca atcatcgtaa tttcccgcaa
     4381 aatcacgaat ttgtttaaaa tccacatcta aaatccttgt gcaaatttta tttaaaaaat
     4441 gtctatcatg agagataaca accaaagttc cttcatgtct taaaagctca ttttcaagcc
     4501 aaaaaatcgc ctctaaatca aggttatttg taggctcatc taaaaaaagc acatccgcac
     4561 ccaaagacaa aacttgagct agtaagactt taaatttatc cgcactttgc aaggtgctca
     4621 tcaaagcatc aaaatcttta atctttaaag aacttaaaat tttttcacaa cgcgtttcac
     4681 aatcataatt tggatcttct tcagccgtta ttatctcaag ctcacctaaa cgctcattga
     4741 tctcatctgt aaattcctcg ctcatataaa gcttttcttt ttcttttaag gcctcatata
     4801 aacgcttatt tgcacacatc actgcatctt tgatggtgta gttttcaaaa gcaaattgat
     4861 cctgtcctaa aactgcgatt tttaaacctt catcaaatac tatttcacca ctactcgact
     4921 caatttctcc tgaaagaatt ttcaaaaaag tcgattttcc cgcaccatta gcaccgataa
     4981 gtccgtatct ttgtcctcga acaagtttta aattaacatt ttcaaataaa agctgatttg
     5041 caaaacgcat agtaagattt tttacttcaa ccatgatttt ccttaaattt tttacttata
     5101 aaaattttta agaaattgta tcaaaaaaag acttgaaatt aattaagtat aaattttata
     5161 tagacaatga aaataaaatt tcattgtcaa aataaattaa taatctaaaa gttctacaaa
     5221 aacttgcttt ttatcatcac taaatctagc actataagaa atttgagttt cgtattcccc
     5281 tccatcaaat aaaactcctt ttaaagcacc tcttgaatat ttttctcgca tttcattagg
     5341 catttgtgga taagtaaatt ttaactgacc catacaaaaa ctagtttttt tatccttgct
     5401 atctttggtt ataaaacttt caaaagaagt ataaaccact tcattggcat aatctttcaa
     5461 atcaagcaaa ggtttaaaat gcgcccttaa aaccccaagc gtatctgtag ataatgcagc
     5521 ctctaaatcc cttatatcca taccattaga atttatcctt aacgccctta aggattgttc
     5581 atttaaaccg tattcaacat aaacccattc atcattatcc aaaatacttt ttagtgtaag
     5641 cttaacatct tcatcatcgc attttggctt attgttaaaa catcctgtaa ataaaaaaac
     5701 aaacatcaaa cttaataaaa tatttttcat tatttctcca ttattatttt aataaattct
     5761 atgatttcat catttttagc accatcttgc cccaaaagac tttttagtaa atctgagcta
     5821 agctgtggag gaaatataag ataagaattt attggaaaac catttgattt taagcctatg
     5881 caaaattgtt catctttatt tgtgtatgct tttcctgtaa caatttgata ggtatctttc
     5941 tcataaagta aggtaggctc tacttcaaaa ggtgtatatt tttcactcat tttcatctcc
     6001 attctttcat tggttttaaa ataaaataat catcactgta tgatatttgc aattttttca
     6061 taattttgtt tgcgaagttt tttacctact aaaaacatat ctacaatcca ccaaatagtc
     6121 caattgacta tcactaatat atatgctatg ttctgcaaag attcacttgc aacaatatta
     6181 aaaattattg gaataatcac aaatgctaaa cgcacaaaac ctaaaaccat atcacctatc
     6241 ataaaacgcc ctactccaaa agggctaaat aaaaaagttc ctacccaaaa caccaaagca
     6301 gggcttttta gtttaagcat aggaagttga tttaacacat ctttttttct ttcttcgctt
     6361 aagcgttcaa atttttcttt tagcgtaatt gccgctaaac catctcttgg taacttatcg
     6421 ccaatattag aaagaactga attaaaatca taacttctcc ttgaaaatta aaaaatatct
     6481 cgaatta
//
LOCUS       DBBXPZ010000083         6399 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.085, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000083 DBBXPZ010000000
VERSION     DBBXPZ010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6399)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6399)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6399
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.085"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..810
                     /locus_tag="ACJFD7_001483"
     CDS             <1..810
                     /locus_tag="ACJFD7_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF115 domain-containing protein"
                     /protein_id="HGG0860269.1"
                     /translation="DFGYIDTGTHVSHFSYTLALALGFKNIIMIGQDLAFDEEGNSHS
                     KGFDFGEKFSGEENIDKLKVPAYGGKGEVLTHITWNDYRIKLEYLFACNEQKAKFYNA
                     TEGGARINFTEELSFKECCEKLLTKEKPKFELPKSLTKNRSDKLLAKFKEKIQKDQEN
                     AKRFLDDALALKQILENILSKDFILPLEFLEKVYQNIENFNHSLDEDEFIQDEVLRGA
                     FAYRGKFIADVLKLHIQDKTHFITAYIKAYHEWLLYFIEKLEQKYKSLLKV"
     gene            907..2625
                     /locus_tag="ACJFD7_001484"
     CDS             907..2625
                     /locus_tag="ACJFD7_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HGG0860270.1"
                     /translation="MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADD
                     ASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTVKAT
                     IGATQSSKIGLTRFETGGRISSSGEVQFTLKNYNGIDDFQFQKVVISTSVGTGLGALA
                     DEINKNADKTGVRATFTVETRGIAAVRAGATSDDFAINGVKIGKVDYKDGDANGALVA
                     AINSVKDTTGVEASIDANGQLLLTSREGRGIKIDGNIGGGAFINADMKENYGRLSLVK
                     NDGKDILISGSNLSSAGFGATQFISQASVSLRESKGQIDANIADAMGFGSANKGVVLG
                     GYSSVSVYMSSTGSGFSSGSGYSVGSGKNYSTGFANAIAISAASQLSTVYNVSAGSGF
                     SSGSTLSQFATMKTTAFGVKDETAGVTTLKGAMAVMDIAETAITNLDQIRADIGSVQN
                     QVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANSVQQN
                     VLRLLQ"
     gene            2771..4489
                     /locus_tag="ACJFD7_001485"
     CDS             2771..4489
                     /locus_tag="ACJFD7_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin A"
                     /protein_id="HGG0860271.1"
                     /translation="MGFRINTNIGALNAHANSVVNARELDKSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTIKAT
                     IGATQSSKIGLTRFETGGRISSSGEVQFTLKNYNGIDDFQFQKVVISTSVGTGLGALA
                     EEINKSADKTGVRATFTVETRGIAAVRAGTTSDTFAINGVTIGQVAYEDGDGNGALVA
                     AINSVKDTTGVEASIDANGQLLLTSREGRGIKIDGNIGGGAFINADMKENYGRLSLVK
                     NDGKDILISGSNLSSAGFGATQFISQASVSLRESKGRFDANIADAMGFGSANKGVVLG
                     GYSSVSAYMSSTGSGFSSGSGYSVGSGKNYSTGFANAIAISAASQLSTVYNVSAGSGF
                     SSGSTLSQFATMKTTAFGVKDETAGVTTLKGAMAVMDIAETATTNLDQIRADIGSVQN
                     QLQVTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNILAQSGSYAMSQANAVQQN
                     VLKLLQ"
     gene            complement(4520..>6399)
                     /locus_tag="ACJFD7_001486"
     CDS             complement(4520..>6399)
                     /locus_tag="ACJFD7_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HGG0860272.1"
                     /translation="ENNFNKNLKALSGFEYNNLRKKLEDLKELREFTFTQGKDNLDIN
                     IIKKRNLKKMYQDPIKELEKNLEYFKDFTRYPVLFFYGFGNGILYKILLQNQALKRII
                     IFEKELELIFLALNFIDFSKDLSLGRLIILHHDDINLPKMDKVFRLIGDLFYRSYNLH
                     IANDFYEHYKEDILKLNKLNMQIIKNHNLMHGNDPKDALQGIEQFVYNLPQMITHPSY
                     KELLSKRKNLSDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDY
                     VCMLERDEIVAECFNNDFKDFDKDIIFLVASLVHKKTISYLKKNKRKYILIIKGQPFA
                     RCLGLDDYGYINAGMSVSHMAYELAENLGHNNIILIGQDLAYAKDGQTHSQGFIHANL
                     HNGDYERDLDRFSTTAYGGNGKVQSSEIWTLFRQIFENFIAFSKSKTYNCTEGGARIE
                     SAIEKPFKELCENLLENKKDKKFKKLQVLNTKEQVKLGLKIYQKIKKNMNLSLNFKKE
                     CKKVQKQIHNLTHGKNELSLEQINQNIDKIKEKLSNKKYLFLQEILGPTLHHEQSILT
                     PLYLKDIKDESDKQNKLFAWVYAHEALIENIIELLEVQDKRLKIAILPLLDFLEKKKA
                     L"
BASE COUNT         2160 a          954 c         1133 g         2152 t
ORIGIN      
        1 gactttggtt atattgatac aggtactcat gtaagtcatt tttcttatac tttagcttta
       61 gctttaggat ttaaaaatat tattatgata gggcaagatt tagcctttga tgaagaagga
      121 aattcacact caaaaggttt tgattttgga gagaaattta gcggtgaaga aaatatagat
      181 aaacttaaag tccctgccta tggaggcaaa ggagaagttt taactcatat aacctggaat
      241 gattatcgta taaaacttga atatcttttt gcttgcaacg aacaaaaagc aaagttttac
      301 aatgctactg aaggtggagc aaggattaat ttcactgaag aactttcttt taaagaatgt
      361 tgtgaaaaac tccttacaaa agaaaaacct aaatttgaac ttccaaaaag tttaactaaa
      421 aatagaagtg ataaactact agctaaattc aaagaaaaaa tacaaaaaga tcaagaaaat
      481 gctaaaagat ttttagacga tgctttagct ttaaaacaaa ttttagaaaa tatactcagt
      541 aaagatttta ttttaccttt agaattttta gaaaaagtct atcaaaacat agaaaatttt
      601 aatcactctt tagatgaaga tgagtttata caggatgaag ttttaagagg agcttttgct
      661 tatcgtggaa aatttatcgc tgatgtattg aaacttcata tacaagataa aacgcatttc
      721 atcacagctt atattaaagc ttaccatgaa tggttgcttt attttataga aaagttagaa
      781 caaaaataca agtctttgtt aaaagtatga aattttattg ctaaagtata aaatattttt
      841 ttgattgcac gatatagcat ttaacaagtt catggatgag cttgaatttt tttaaaagga
      901 tttaaaatgg gatttcgtat taacaccaat gttgcagctt taaatgctaa agcaaacgct
      961 gatttaaata gtaaaagttt agatgcttct ttaagcagac ttagttcagg tcttagaatc
     1021 aactccgcag cagatgatgc ttcagggatg gcgatagcag atagtttaag atctcaagct
     1081 aatactttag gtcaagctat atctaatggt aatgatgctt taggtatctt acaaactgct
     1141 gataaggcta tggatgagca acttaaaatc ttagatacaa tcaaaactaa ggcaactcaa
     1201 gcggctcaag atggacaaag tttaaaaaca agaaccatgc ttcaagcaga tatcaaccgt
     1261 ttaatggaag aacttgacaa tatcgcaaat actacttcat ttaacggtaa acaactttta
     1321 agtgggaatt ttatcaatca agaatttcaa atcggtgcaa gttcaaatca aactgtaaaa
     1381 gctactatag gagcaactca atcttctaag ataggtttaa cacgctttga aacaggagga
     1441 agaatttcat ctagtggtga agtacaattt actcttaaaa attacaatgg tatagatgat
     1501 tttcagtttc aaaaagttgt gatttcaact tcagttggaa caggacttgg agctttagca
     1561 gatgagatca ataaaaatgc tgataaaaca ggtgttagag ctacttttac agtagaaact
     1621 agaggtatag ctgcagttag agcaggagct acttcagatg actttgctat caatggggta
     1681 aaaatcggta aagtagatta caaagatggt gatgctaatg gagccttagt tgctgcaatc
     1741 aattcggtta aagataccac tggagttgaa gcttcgattg atgctaatgg acaactttta
     1801 cttacttcaa gagaaggtag agggattaaa atcgatggta atataggtgg aggtgccttt
     1861 atcaatgctg atatgaaaga aaactatggc cgcttgtctt tagttaaaaa tgatggtaaa
     1921 gatattttaa tcagcggtag caatctttct tctgcaggct ttggtgcaac tcaatttatc
     1981 tctcaagctt ctgtttcttt aagagagtca aaaggacaaa ttgatgctaa tatcgctgat
     2041 gctatgggat ttggttctgc aaacaaagga gttgtgttag gtggttattc ttctgttagt
     2101 gtctatatga gtagcacagg aagtggattt tcttcaggtt caggttattc tgtaggtagc
     2161 ggtaaaaatt attccacagg ttttgcaaac gctatagcta tttcagctgc ttcgcaactt
     2221 tctacggtat ataatgtttc tgcaggctca ggtttttcaa gtggttcaac actttctcag
     2281 tttgcaacta tgaaaacaac tgcttttgga gtaaaagatg aaacagcagg tgttaccaca
     2341 cttaaaggcg ctatggctgt gatggatata gctgaaacag ctataacaaa tcttgatcaa
     2401 atcagagccg acattggttc ggtacaaaat caagttacat caactataaa caacatcacc
     2461 gtaactcaag taaacgttaa agcagcagaa tcgcaaatcc gtgatgtaga ctttgcagcc
     2521 gagagtgcaa actactctaa agcaaatatc ttagctcaaa gcggctctta tgccatggca
     2581 caggctaatt ctgttcaaca aaatgtttta agattactac agtagtttac aaaagctgca
     2641 atatatacaa atccaagcct agtttagaac taggcttttt tattttaaac tctaaaattt
     2701 ttaattaaac taaaacttgg aacacttttt gctttaatct tttcgatgca atattttgaa
     2761 aggatttaaa atgggtttta ggataaacac caacatcggt gcattaaatg cacatgcaaa
     2821 ttcagttgtt aatgctagag aactggataa gtctttaagt agacttagtt caggtcttag
     2881 aatcaactcc gcagcagatg atgcttcagg gatggcgata gcagattctt tgcgttcaca
     2941 agcagccact ttaggtcaag ctatcaacaa tggtaatgat gctataggta tcttacaaac
     3001 tgctgataag gctatggatg agcaacttaa aatcttagat acaatcaaaa ctaaggcaac
     3061 tcaagcggct caagatggac aaagtttaaa aacaagaacc atgcttcaag cagatatcaa
     3121 ccgtttaatg gaagaacttg acaatatcgc aaatactact tcatttaacg gtaaacaact
     3181 tttaagtggg aattttatca atcaagaatt tcaaatcggt gcaagttcaa atcaaactat
     3241 aaaagctact ataggagcaa ctcaatcttc taagataggt ttaacacgct ttgaaacagg
     3301 aggaagaatt tcatctagtg gtgaagtaca atttactctt aaaaattaca atggtataga
     3361 tgattttcag tttcaaaaag ttgtgatttc aacttcagtt ggaacaggac ttggagcttt
     3421 agcagaagag atcaataaaa gtgctgataa aacaggtgtt agagctactt ttacagtaga
     3481 aactagaggt atagctgcag ttagagcagg aactacttca gatacttttg ctatcaatgg
     3541 agtaactata ggtcaagtag cctatgaaga tggtgatgga aacggtgctt tagttgctgc
     3601 aatcaattcg gttaaagata ccactggagt tgaagcttcg atcgatgcta atggacaact
     3661 tttacttact tcaagagaag gtagagggat taaaatcgat ggtaatatag gtggaggtgc
     3721 ctttatcaat gctgatatga aagaaaacta tggccgcttg tctttagtta aaaatgatgg
     3781 taaagatatt ttaatcagcg gtagcaatct ttcttctgca ggctttggtg caactcaatt
     3841 tatctctcaa gcttctgttt ctttaagaga gtcaaaagga agatttgatg ctaatatcgc
     3901 tgatgctatg ggatttggtt ctgcaaacaa aggagttgtg ttaggtggtt attcttctgt
     3961 tagtgcctat atgagtagca caggaagtgg attttcttca ggttcaggtt attctgtagg
     4021 tagcggtaaa aattattcca caggttttgc aaacgctata gctatttcag ctgcttcgca
     4081 actttctacg gtatataatg tttctgcagg ctcaggtttt tcaagtggtt caacactttc
     4141 tcagtttgca actatgaaaa caactgcttt tggagtaaaa gatgaaacag caggtgttac
     4201 cacacttaaa ggcgctatgg ctgtgatgga tatagctgaa acagccacaa caaatcttga
     4261 tcaaatcaga gcagacattg gttcggtgca aaatcaactt caagttacta taaacaacat
     4321 tactgttact caagtcaatg ttaaagcagc tgaatcaacc ataagagatg tagactttgc
     4381 agctgagagt gcaaattttt ctaaatataa catccttgcg caatcaggtt cttatgctat
     4441 gagtcaggct aatgcagtgc agcaaaatgt tttaaaactt cttcaataat ttcttagatg
     4501 cttttatgca tctaagcttt taaagtgctt ttttcttttc taagaagtct agcaaaggta
     4561 aaatagcgat tttaagtctt ttatcttgaa cttctaaaag ttctatgata ttttctatca
     4621 aagcttcgtg tgcataaacc caagcaaaaa gtttattttg tttatcagat tcatctttga
     4681 tatctttaag atataaaggc gttaatatac tttgttcatg atgtaaagta gggcctaaaa
     4741 tttcttgcaa aaagagatat tttttatttg aaagtttttc tttgattttg tctatatttt
     4801 ggtttatttg ttcgagagag agctcgtttt ttccatgggt aagattgtga atttgttttt
     4861 gaactttttt acactctttt ttaaaattta aggataaatt catatttttt ttaatttttt
     4921 gatagatttt taatccgagt tttacttgtt ctttagtatt taaaacttgt aattttttaa
     4981 attttttatc ttttttattt tcgagtaaat tttcgcaaag ttctttaaaa ggtttttcta
     5041 tagcgctttc tatcctagca cctccttcag tgcaattata agttttactt ttgctaaaag
     5101 caatgaaatt ttcaaaaatt tgtctaaaaa gtgtccaaat ttcagaactt tgaacttttc
     5161 catttcctcc ataagctgta gtgctaaatc tatctaagtc cctttcatag tctccattgt
     5221 gtaaattagc atggatgaaa ccttgagaat gtgtttgccc atctttggca taagctaaat
     5281 cctgacctat gagaatgatg ttgttatgtc ctaaattttc agccagttca taagccatat
     5341 gagatacact catgcctgcg ttaatatatc cataatcgtc tagccccaag catctcgcaa
     5401 aaggctggcc ttttatgatt aaaatgtatt ttcttttatt ttttttaaga taagaaatgg
     5461 tttttttatg caccaaagaa gctactagaa aaatgatgtc tttatcaaaa tctttaaaat
     5521 cattattaaa acattcagct actatttcat cgcgttccaa catacaaaca taatcaggtt
     5581 ttataccatg cttagctaaa ataggataag aagaatccgc acaaaaaatt gtagctttac
     5641 tagcatactt ttttaataaa ggaagttgtt tagtaagaga tggtcctgta gaaacaatga
     5701 tagctgtatc acttaaattt tttcttttag aaagtaattc tttataacta ggatgagtga
     5761 tcatttgagg taagttataa acaaattgct ctataccttg aagagcatct tttggatcat
     5821 taccatgcat aagattgtga tttttgatga tttgcatgtt gagtttatta agttttaaaa
     5881 tatcttcttt atagtgttca taaaaatcat tagcaatgtg tagattataa gaacgataaa
     5941 acaaatcccc tatcaaacga aaaactttat ccattttagg aagattaata tcatcatgat
     6001 gtaaaataat gagtcgccct aagcttaaat ctttgctaaa atctatgaaa tttaaggcca
     6061 aaaagataag ctctaattct ttttcaaaga tgattattct tttaagtgct tgattttgaa
     6121 gtagaatttt atataaaatt ccatttccaa aaccataaaa aaaaagcaca ggatagcgtg
     6181 taaaatcttt aaaatattct aaattttttt caagctcttt gatgggatct tgatacattt
     6241 tttttaaatt tctttttttt atgatattga tatcaagatt atcttttcct tgagtgaaag
     6301 taaattctct aagctctttt agatcctcaa gttttttgcg taagttgtta tactcaaaac
     6361 cgcttaaagc ttttaaattt ttgttaaaat tattttctt
//
LOCUS       DBBXPZ010000084         6372 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.086, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000084 DBBXPZ010000000
VERSION     DBBXPZ010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6372
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.086"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            25..327
                     /locus_tag="ACJFD7_001487"
     CDS             25..327
                     /locus_tag="ACJFD7_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HGG0860273.1"
                     /translation="MKKLLVVSALACLGVSAFAADGATLFKKCAVCHGANADKVYLNK
                     VPALKTLSSAERLQYMKEYSEGKRNAYGQGAIMKLNLKGLTEEDFKAIEAHIETLK"
     gene            complement(350..556)
                     /gene="ccoS"
                     /locus_tag="ACJFD7_001488"
     CDS             complement(350..556)
                     /gene="ccoS"
                     /locus_tag="ACJFD7_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HGG0860274.1"
                     /translation="MNSIIMMMIGVSILAFFIILATLLWGIKNKQFDDDYKFTTLNDD
                     EDSLRDAIELERRKKEALDKKRLS"
     gene            complement(553..2910)
                     /locus_tag="ACJFD7_001489"
     CDS             complement(553..2910)
                     /locus_tag="ACJFD7_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase
                     metal-binding domain-containing protein"
                     /protein_id="HGG0860275.1"
                     /translation="MIMKCEHCKLDYKQAQMIEYKGKFFCCKGCESVWEILHESGLDE
                     FYEKLGNQTLSPVNFQNEMKNYDEFIAKTKEGFSEIYLMIHGIECAACVWLNEKILTK
                     QEGILELDINHLNHKARIVFDEQSISLVQILRLIESIGYKASAYDASKASKKADLLKR
                     EFYSKLVVAIACVMNIMWIAVAKYAGFFSGMDKDTKDILNFAEFILCSPVLFYTGSHF
                     YKSAFKTLKMNSLNMDVLVISGASLAYVYSLWAMFFRVGEVYFDSVAMIICFVFIGKY
                     LEMFSKKRALDTIDGLNDFLQNEVLVFNGKEFVSKEVQKVCLGDRILLKTGDKILIDG
                     ICKSGEMSVDTSSLNGENTPKLIQKEDEIFSACIVLDGSVEYEATKLYKDSKLSQIIQ
                     LLELASSKKAKLESLVNSLLAYFSRTVLLIAFICFAFWFFYKEESFEISLVNAIAVLI
                     IACPCALALATPVSNLVALGRALKKHILFKSSSVIEDLSKCDCVVFDKTGILTKIELE
                     LKEVFLDKALDLNELYNFVKLSKHPISQNIASYLKQKGAKDLNLDFKKHSSIQAKGLS
                     AELNEELLLGGSSKFLQEKGIVAKEFDNTHFIFAKEGKILAFFEFDSVLREGAKELIA
                     YLKKEKKELMILSGDHQKAVEKIAKKLEIQNYQASCLPEDKMKTIENLSKNYKVLFVG
                     DGVNDALALKYASVSMTLREGSDLAIESSDVLLLKNDLLSLKKAIKLSKNTFKIIKQN
                     LAFSLFYNACTIPLAFLGMINPLFAAISMSFSSIIVVLNALRIKE"
     gene            3019..4317
                     /gene="rho"
                     /locus_tag="ACJFD7_001490"
     CDS             3019..4317
                     /gene="rho"
                     /locus_tag="ACJFD7_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HGG0860276.1"
                     /translation="MEKEKKQHQRTHVPVEGYKIEELKLLDLENLVKIANECEIENPR
                     EFRRQELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQ
                     IKKFALRVGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTE
                     KIKLEYDAMKLTGRVLDLFTPIGKGQRGLIVAPPRTGKTELMKELATAIAKNHPEMHL
                     IVLLVDERPEEVTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVII
                     LLDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATAL
                     IDTGSRMDDVIFEEFKGTGNSEIVLDRNIADRRIYPAINIIKSGTRKEELLQGVANLQ
                     KIWAIRSAISQMDDVEALKFLYSKMLKTKDNVELLSIMNE"
     gene            4321..5850
                     /locus_tag="ACJFD7_001491"
     CDS             4321..5850
                     /locus_tag="ACJFD7_001491"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HGG0860277.1"
                     /translation="MLQALAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSG
                     LRGSGKTSSARIFSRALVCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLED
                     IQALIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLK
                     LPATVLSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLT
                     LLDQAIIFCQNEISISKITDMLGFLDPQKIKAFYQAILTKDKEKVFVYLEELQDYEAS
                     SVIDEMLFYLKESFFAKSTEFSTLIYERFFRILSKAKNMLCDDDGFTLCVMAFMMMEA
                     SHLKEIDAQIQEIKQENTTNIIPRITPSPIIPHLEKKTEKNAYEILLDSIYDRDFDLA
                     ECFKQSTKFISFENNTLNISSNAQGQNRDTLNKGFKLIQELFKAKFGENAKINVQKAL
                     TIDENKLQSLTQELPNNENKNIDIQSSINMLKEGAKKFDPQEDLKEALKDCFGEPSIE
                     N"
     gene            complement(5847..6175)
                     /locus_tag="ACJFD7_001492"
                     /pseudo
     CDS             complement(5847..6175)
                     /locus_tag="ACJFD7_001492"
                     /inference="COORDINATES: protein motif:HMM:NF021453.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 family protein"
     gene            complement(6189..6338)
                     /locus_tag="ACJFD7_001493"
     CDS             complement(6189..6338)
                     /locus_tag="ACJFD7_001493"
                     /inference="COORDINATES: protein motif:HMM:NF021453.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 family protein"
                     /protein_id="HGG0860278.1"
                     /translation="MIRFSKIIILLTVASLAGIVVFGNVTDYNSNFQFVSHVMSMDTK
                     PDLFR"
BASE COUNT         2361 a         1143 c          886 g         1982 t
ORIGIN      
        1 taatttttac tgaggagaaa tcaaatgaaa aaattattag tagtttctgc tttggcatgt
       61 cttggtgttt ctgcttttgc tgcagatggt gctacacttt ttaaaaaatg cgcagtatgc
      121 catggtgcaa atgctgacaa agtttactta aacaaagttc cagctttaaa aactctttct
      181 tctgctgaaa gacttcaata catgaaagaa tattcagaag gtaaaagaaa tgcttatggt
      241 caaggtgcga tcatgaaact taaccttaaa ggtttaactg aagaagattt taaagctatc
      301 gaagctcata ttgaaacttt aaaataattt ctaaaaaagg cttttctttt taagaaagcc
      361 tttttttatc caaagcttct tttttacgtc tttctaattc tatagcatca cgtaaagaat
      421 cctcatcatc atttaaagta gtaaatttat aatcatcatc aaattgctta tttttaatcc
      481 cccaaagcaa agttgccaaa atgataaaaa acgctaagat agaaactcct atcatcatca
      541 tgattatact attcattctt taatccttaa agcatttaaa acgactatta tactactaaa
      601 agacatagaa atagcagcaa ataaaggatt tatcataccc aaaaaagcca aaggtatggt
      661 gcaagcatta taaaacaaag aaaaagcaag attttgcttg ataattttaa aggtgttttt
      721 agataatttg atggcttttt ttaaagaaag caagtcattt ttcaaaagca aaacatcact
      781 actttctata gctagatcac ttccttctct taaagtcatt gaaacacttg cgtattttaa
      841 agctagtgca tcatttaccc catcacctac aaataaaact ttgtaatttt tacttaaatt
      901 ttctatagtt ttcatcttat cttcaggcaa acaagaagct tgataatttt gaatttctaa
      961 ctttttagcg attttttcca ctgctttttg atgatcgcca ctgagtatca ttaattcttt
     1021 cttttctttt ttaagataag cgataagctc ttttgcacct tctcttaaaa cactatcaaa
     1081 ctcaaaaaaa gctaaaattt taccttcctt ggcaaaaata aaatgcgtat tatcaaattc
     1141 tttagccaca ataccctttt cttgcaaaaa tttagaactt ccgcctaaaa gcaactcttc
     1201 atttaactca gcacttaaac ctttagcttg aatactcgaa tgctttttaa aatccaaatt
     1261 taaatcctta gctccttttt gctttaaata cgacgcaata ttttgagata taggatgttt
     1321 agaaagtttt acaaaattat aaagctcatt taaatcaagc gctttatcta gaaaaacctc
     1381 tttaagttca agctctattt tggttaaaat acccgtttta tcaaacacca cacaatcaca
     1441 tttgcttaaa tcctctatca cgctagaact tttaaacaaa atatgttttt tcaaagctct
     1501 acctaaagct acaagattac tcacgggcgt tgctaaagcc aaagcacaag gacaagcgat
     1561 aatcaaaact gcaatcgcat taactaaaga aatttcaaaa ctctcttcct tataaaaaaa
     1621 ccaaaaagca aaacaaataa aagcaatcaa taaaaccgtt ctagaaaaat aagccaaaag
     1681 actattaacc aaactttcaa gttttgcttt tttagagctt gcaagttcta aaagctggat
     1741 aatttgactg agttttgaat ctttgtaaag ctttgttgct tcatactcca cacttccatc
     1801 aagcactata caagctgaaa aaatttcatc ttctttttgt atgagttttg gggtattttc
     1861 tccatttaaa gaagaagtat ccacgctcat ttcaccactt ttacaaatcc catcgattaa
     1921 aattttatct ccagttttaa gcaaaattct atcccccaaa caaacctttt gcacttcttt
     1981 agagacaaat tctttaccat tgaaaactaa aacttcattt tgcaaaaaat cattaagccc
     2041 atctatagta tctaaagcac gctttttgct aaacatctca agatatttac ctataaaaac
     2101 aaagcaaatt atcatcgcca cagagtcaaa atacacctcc cctaccctaa aaaacatggc
     2161 ccataaagaa taaacataag ccaaactcgc tccactaatc accaatacat ccatatttaa
     2221 actattcatt tttaaagttt taaaagcact tttataaaaa tgagatcccg tataaaaaag
     2281 cacaggagaa caaaggataa attcagcaaa atttaaaata tccttagtgt ccttatccat
     2341 accgctaaaa aatcctgcgt attttgccac tgctatccac atgatattca tcacacaagc
     2401 tatagccaca acaagcttag aataaaattc cctttttagt aaatccgctt tttttgaagc
     2461 cttgctcgca tcataagcac tcgctttata gcctatgctt tcaataagtc ttaaaatttg
     2521 caccaaagaa atgctttgct catcaaaaac aatgcgtgct ttatggttta aatgattaat
     2581 atcaagttct aaaattcctt cttgtttggt taaaattttc tcattaagcc acacacaagc
     2641 tgcacattct ataccgtgta tcatgagata aatttcacta aatccttctt tggttttagc
     2701 gataaactca tcataatttt tcatttcatt ttgaaaattt acagggctta aagtttgatt
     2761 tccaagcttt tcataaaact catctaatcc actttcatgc aaaatttccc aaacgctctc
     2821 acaaccttta caacaaaaaa atttaccctt atactctatc atttgggctt gtttataatc
     2881 aagtttgcaa tgttcacatt tcataatcat tctttaaaaa aatatttttt ataattataa
     2941 acaaatttga caaaaagtgc atttttttat taaaatcaca ttttacaaaa attattctgc
     3001 taaatcttac gaggacttat ggaaaaagaa aaaaaacaac atcaaagaac ccacgttcca
     3061 gtggaaggtt ataaaatcga agaattaaaa ttattagatt tagaaaatct agttaaaatc
     3121 gctaatgaat gtgaaatcga aaacccaaga gaatttcgcc gccaagaact tatttttgaa
     3181 attttaaaag cacaaacaaa aaaaggcggt tttatacttt ttacagggat tttagaaatt
     3241 tcttccgaag gttatggctt tttaagaggt atggactcta atcttagcga tagtgttaat
     3301 gacgcttatg tttcaaattc acaaattaaa aaatttgctc tgcgtgtagg cgatatcgtt
     3361 acaggacaag ttagagaacc aaaagatcaa gaaaaatact acgctctttt aaaaatcgaa
     3421 gcgatcaatt atctgccttt gcaagaagcc aaagaaagac ctttgtttga taacttaacc
     3481 cctatttttc caacagaaaa aatcaaactc gaatacgatg caatgaagct tacaggtcgt
     3541 gttttggatc tttttactcc tataggaaaa ggacaacgcg ggcttatcgt tgctccacca
     3601 cgcacaggta aaacagagct tatgaaagaa cttgctactg ctattgcaaa aaaccaccca
     3661 gaaatgcatt taatcgtact tttagtcgat gaaaggcctg aagaagttac cgatatgcaa
     3721 agatgtgtaa aaggcgaagt ttttagttct acttttgatt tacctgctta taatcatgtg
     3781 cgtgtagccg aactcgtgat agaaaaagcc aaaagaatgg tagaaacagg caaagatgtt
     3841 atcatcttac ttgatagtat cacaagactg gcacgtgctt ataacaccgc aactccaagc
     3901 agtggaaaag ttctaagcgg cggagtggat gctaatgccc tacacaagcc aaaacgcttc
     3961 tttggtgcag ctagaaatat agaaaatgga ggctctttaa ccatagttgc tacagcttta
     4021 attgatacag gttcaagaat ggatgatgtg atttttgaag aatttaaagg cacaggaaat
     4081 agcgaaatag ttcttgatag aaatatcgcc gatagaagaa tttatcctgc gattaatatc
     4141 atcaaatcag gaacaagaaa agaagaattg ctccaaggcg tagcaaatct tcaaaaaatt
     4201 tgggcaatcc gttcagcgat ttctcaaatg gatgatgttg aagcgttgaa atttttatat
     4261 tctaaaatgc ttaaaaccaa agacaatgta gaacttttat ctataatgaa cgagtagaaa
     4321 atgcttcaag ctttagcgat taaatacaga ccaaaaacct ttgatgaact cataggacaa
     4381 aagacagtta gcgtaagttt aaaatacgcc ctaaatcata atcgcttagc tcatgcttat
     4441 cttttttcag gacttagagg aagtggaaaa acttcaagtg ctagaatttt ttctcgtgct
     4501 ttagtttgcg aacaaggacc aagtgatact ccatgtggca cttgcaaaca ctgtcttgca
     4561 gcacttgaag gcaaacacat agacattata gaaatggatg ctgcaagcaa ccgtgggctt
     4621 gaagatatac aagccttaat tgaacaaacc aaatacaccc cttctatggc aagatttaaa
     4681 attttcatca ttgatgaagt acatatgctt accccacagg ctgcaaatgc acttttaaaa
     4741 accttagaag aacccccaag ttatgttaaa tttatacttg caaccactga tcctttaaaa
     4801 ctcccagcta ccgtgctttc aagaacgcaa cattttcgct ttaaacaaat tccccagagt
     4861 gaaattttaa atcatcttaa agaaatttta cttaaagaaa atgttaaatt tgaagaagaa
     4921 gctttaaaat ttatagcaag aagcggcaat ggatctttaa gagatacttt aaccttgctt
     4981 gaccaagcta ttattttttg tcaaaatgaa atcagtatta gtaaaattac agatatgtta
     5041 ggctttttag atcctcaaaa aatcaaagcc ttttatcagg ctatcttaac aaaagacaag
     5101 gaaaaagttt ttgtgtattt agaggaatta caagactatg aagcctcaag cgtgattgat
     5161 gaaatgcttt tttatttaaa agaaagtttt tttgcaaaaa gcacagaatt ttctacttta
     5221 atttatgaaa gatttttccg tattttatca aaagctaaga atatgctttg cgatgatgat
     5281 ggctttacgc tttgtgttat ggcttttatg atgatggaag caagtcattt aaaagaaatt
     5341 gacgcacaaa tccaagaaat caaacaagaa aatacaacaa atattatacc taggatcaca
     5401 ccttctccta tcatacctca tcttgagaaa aaaacagaaa aaaatgctta tgaaatcttg
     5461 cttgatagta tttatgatag ggattttgat cttgcagaat gctttaaaca aagcacaaaa
     5521 tttattagtt ttgaaaacaa taccttaaat ataagctcaa acgcacaagg acaaaatcgc
     5581 gatacactca ataaaggttt taaactcata caagaacttt ttaaagctaa atttggagaa
     5641 aatgctaaaa ttaatgtgca aaaagcacta acaattgatg aaaataagct tcaatcctta
     5701 actcaagaat taccaaacaa tgaaaataaa aacatagata ttcaaagttc tattaatatg
     5761 cttaaagaag gggccaaaaa atttgaccca caagaagatc ttaaagaggc tcttaaagat
     5821 tgttttggag agcctagtat agaaaattaa tcatcatttt taagagagat gaaaatcaaa
     5881 gctaaaaaca tataagttac caatcttgta gtatcaggta aaccgttcca aaccttactc
     5941 atccacattc caaaccattc tgcaacaact acttggaagg caaaaaacca taaaatacac
     6001 aagttaaaga aataatccca aaaatcttag cattatgaaa gctttgagca tctaaatttc
     6061 tagctttaaa catatcataa gcaccttttt ttagagctgt taaggcaata aaagtttcaa
     6121 aaagaataat tgctatatag cctatatgat aaatcacggg agaagtaata gccatataaa
     6181 ctacagcatt acctaaataa atcaggcttt gtatccatac tcatcacatg cgaaacaaat
     6241 tggaaattag aattgtaatc tgtcacattt ccaaaaacca ctatacctgc taacgatgca
     6301 acggtaagca aaataataat ttttgaaaat ctaatcattt tgcttatgca aaaacatttt
     6361 tgttgcattt at
//
LOCUS       DBBXPZ010000085         6365 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.087, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000085 DBBXPZ010000000
VERSION     DBBXPZ010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6365
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.087"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..751)
                     /locus_tag="ACJFD7_001494"
     CDS             complement(<1..751)
                     /locus_tag="ACJFD7_001494"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008441 - 3'(2'),5'-bisphosphate
                     nucleotidase activity [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HGG0860279.1"
                     /translation="MLNLDKFLEIAINASNQASKAILEERKNFKTWEKEDKSPLTSAD
                     LASNKILNDILGSTDIKILSEEKLLSKEECEELKTFWLIDPLDGTSGFLKGSDEFCVM
                     ISLVHDNRPVLSLIQNPSKGDIFYAHAKTKVYKNDKPLQIDQQEYEKNKYKALLSVNH
                     LSKEDEDFAKEHQLEAINIGSGLKFCAILEARAGVYKRFEKLNIWDIVAGDFLINQNG
                     GFMGDFSKKYILYSPLNYKSSPFICVSSRNFL"
     gene            complement(831..2099)
                     /locus_tag="ACJFD7_001495"
     CDS             complement(831..2099)
                     /locus_tag="ACJFD7_001495"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HGG0860280.1"
                     /translation="MSNSVTITDNRNGKSYEFPIYDGTTGPSVVDMSSFYKQTGMFSY
                     DEGLTSTATCKSKITYIDGENGILMHRGYPIEWLAENKLYLDVVHLLLYKELPDATRL
                     EAFRYEMKKRSFIHEGMHRLFDSFPDNAHPMAVLQGAVSSLSAFYPDHLNMNVKEEYM
                     EMAARIVAKIPTIVATAYRYKHGFPMAYPNLDRGFTENFLYMLRTYPYDHVELKPIEV
                     KALDTVFMLHADHEQNASTSTVRAVGSTHAHPYACIAAGIGALWGHAHGGANEGVIRM
                     LEQIGSVDRVDEFIKRAKDKNDPFRLMGFGHRVYKNFDPRAKVLKKLRDQLIDELGID
                     TNLIKVATRIEEIALSDDYFVQRGLYPNVDFHSGLILKALGIPNEMFATLFVIGRTPG
                     WIAQWIEQKEQESLKIVRPRQLYLGETSKI"
     gene            complement(2214..3389)
                     /locus_tag="ACJFD7_001496"
     CDS             complement(2214..3389)
                     /locus_tag="ACJFD7_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HGG0860281.1"
                     /translation="MHQSVIDPQGLIDLKILIVIALCLLFSPHIAKILRLPLSATEII
                     LGAIIAYFGFIGKSENFALLANVGFYYLMFIAGMEVNLRAFFNMGKEVAKKSFFYIFL
                     LYTLSSFIVWIFGLSLVFVIIIPVMSVGLLSLLFKDFGKECYWLNIAMIVATLAEVIS
                     IVLLTIAGAFLREGTGIIDVAQSILYLNIFLGLCLLGFKMLGVLFWWYPQLKVVLMPW
                     EDKNEKDIRFCMAIFILIIVAMVITKLEIVLGSFIAGSFIATFFDHKKDLEHKLSTFG
                     HGFLIPIFFIHIGSTFDLKMILDYKIVLQAFLLMFVMVGLRILCASVFLKRIGFKNMI
                     LFGLSHSMPLTLLIATATLGYSGKVIDEKLYSALILTALFEAIIVMSMIKFLSNSKK"
     gene            complement(3370..4206)
                     /locus_tag="ACJFD7_001497"
     CDS             complement(3370..4206)
                     /locus_tag="ACJFD7_001497"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HGG0860282.1"
                     /translation="MQIMLCAISNIASGNCSEDCKYCTQSAHVKTDIQKYRRKELSQI
                     VLEAKMAKKNEALGFCLVTAGLGLDDEKLEYVCEAAKAVQKEVPNLLLIACNGMASVE
                     QLKELKKAGIFSYNHNLESSKEFFPQICTTHTWESRFQTNLNAKEVGLMLCCGGIYGM
                     GESEEDRLSFRKSLQELQPFSTPINFFIANENLKLQVPRLNADEALKIVRDTKEALPQ
                     SVVMVAGGREVVLRERQYEIFQAGAGAIVIGDYLTTKGEEPSQDIIKLKEMGFTFASE
                     CH"
     gene            complement(4208..6310)
                     /gene="topA"
                     /locus_tag="ACJFD7_001498"
     CDS             complement(4208..6310)
                     /gene="topA"
                     /locus_tag="ACJFD7_001498"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HGG0860283.1"
                     /translation="MKKNLIIVESPAKAKTIGNFLGKDYEVIASKGHIRDLPKSSFGI
                     KIEDDEFIPEYRITSDHSALVKELKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKD
                     ENTLPRIVFHEITKSAIENALKNPRKLNMHSVNAQQTRRLLDRIVGYKLSPLLGQKIQ
                     RGLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLT
                     ITNKDRAKLILEACKNEVYSISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTM
                     MIAQKLYEGVNTHEGVMGVITYMRTDSLNLAKEAVENARKFIQANFGKDYLPSKANVY
                     TTKTKGAQEAHEAIRPTNLSFTPEISAKFLDKDELKLYTLIYNRFLACQMSPAISQTQ
                     NVFVKNDRAVFKISGRKILFDGYYKVYGDMDKDKILPNFKIGQNLKVQNLEMNSHFTE
                     PPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVTIDKKQLIPSDVAFNVTEVL
                     EKNFSDIVDSKFTSNLENTLDEIAEDKADWQETLKEFYYPFMRKIEEGKTKIASQKTV
                     TKLGESCPDCGGELAIRKGRFGEFVACLNFPKCKYSRNLKSESKNESENTAAKAKANG
                     TGITCPSCQKGEIVERFSKRGKFYGCSAYPKCNFISKYKPSEEKCEECGETLVIKELK
                     KGTFLECLKCKIKKEMKD"
BASE COUNT         2066 a         1183 c          893 g         2223 t
ORIGIN      
        1 gtaaaaaatt cctagatgaa acacaaataa aaggactgga tttataattt aaagggctat
       61 ataaaatgta ttttttagaa aaatctccca taaatcctcc attttgatta atcaaaaaat
      121 ctcctgctac aatatcccaa atattaagct tttcaaatct tttataaact cctgccctag
      181 cctctaaaat agcacaaaat ttcaatccag agcctatatt aatagcttct aattgatgct
      241 cttttgcaaa gtcttcatct tctttgctaa gatgattaac actcaataag gctttatatt
      301 tatttttctc gtattcttgc tggtcaattt gcaaaggttt atcgttttta taaaccttgg
      361 tttttgcatg agcatagaat atatcacctt ttgatggatt ttgtatgagt gataaaacag
      421 ggcgattgtc atgaaccaaa cttatcataa cgcaaaattc atcactgcct tttaaaaaac
      481 cacttgttcc atcaagagga tcgataagcc aaaaagtttt taattcttca cactcttctt
      541 tgctgagtaa tttttcttct gatagaattt taatatccgt agaacccaaa atatcattta
      601 gaattttatt agaagcaaga tctgctgatg taagcgggct tttatcttct ttttcccaag
      661 ttttgaaatt ttttctctct tctaaaatag ctttagaagc ttgattgcta gcatttatag
      721 caatttctaa aaatttatca agattaagca tgattataaa ctttctataa gattttttaa
      781 aattatacaa gaagattttg tggaattttt aatttccaca aaaattttaa ttaaatttta
      841 ctagtttcac ccaaataaag ttgtcttgga cggactattt taagactttc ttgctctttt
      901 tgttctatcc actgagctat ccatcctggg gtgcgcccta taacaaataa agtagcaaac
      961 atttcatttg gaatacctaa ggcttttaaa ataagtccac tatgaaaatc aacattcgga
     1021 tataaccctc tttgaacaaa ataatcatcg cttaaagcaa tctcttctat acgcgttgct
     1081 actttaataa gattggtatc aatacccaac tcatcaataa gttgatcacg aagctttttc
     1141 agtacttttg ctctaggatc aaaattttta taaaccctat gcccaaagcc catcaagcgg
     1201 aaaggatcgt ttttatcctt agctcttttg atgaattcat ctaccctatc aacactacct
     1261 atttgctcaa gcattctaat aacaccttca ttagctccac catgtgcatg accccaaagc
     1321 gcaccaatac ctgctgctat acaggcataa ggatgagcat gagttgaacc cacagcacga
     1381 actgttgaag ttgaagcatt ttgctcatga tctgcatgaa gcataaaaac tgtatcaagt
     1441 gcttttactt ctataggttt aagctctaca tgatcgtaag gataggttct taacatatat
     1501 aagaaatttt ctgtaaaacc acgatctaaa tttggataag ccataggaaa gccgtgttta
     1561 tatctataag cggtggccac tatagtaggg attttagcta ctattctagc tgccatttcc
     1621 atatattctt cttttacatt catgtttaaa tgatcaggat aaaaagcact aagcgatgaa
     1681 acagcacctt gtaaaactgc cataggatga gcattatcag ggaaagaatc aaaaagacgg
     1741 tgcatacctt catggataaa agaacgtttt ttcatttcat aacgaaatgc ttcaagacgc
     1801 gtagcatcag gtaattcttt ataaagtaaa agatgaacca catctaaata aagtttgttt
     1861 tcagcaagcc actctatagg atagccacgg tgcattaaaa ttccattttc tccatcaata
     1921 taagtgattt ttgatttaca agtagctgta gaagtcaagc cctcatcata agaaaacatt
     1981 cctgtttgtt tataaaaact tgacatatct acaacgcttg gcccagttgt accgtcatat
     2041 ataggaaatt catagctttt tccatttcta ttatcggtta tagtaacgga atttgacatt
     2101 ttcgctcctt ttattgttac ttttattaat tctaacaaaa aagggcgatt atgagttttt
     2161 ttattattaa atttttaaga ttttgtttgc ttttttgagt aaaaaagtaa ctttcatttt
     2221 ttagaattag aaagaaattt gatcatactc ataacaataa tagcctcaaa caacgctgtt
     2281 aaaataagtg ctgaataaag cttctcatca ataaccttgc ccgaataacc caaagtagct
     2341 gttgctataa gcaaggttaa aggcatagaa tgactaagac caaataaaat catattttta
     2401 aaaccaattc tttttaaaaa aacacttgca cataaaattc ttaaacccac cataacaaac
     2461 ataagtaaaa atgcttgtaa aacgatttta taatctaaaa tcattttaag atcaaaggtt
     2521 gaacctatat ggataaaaaa aatagggatc aaaaacccat gtccaaaagt agaaagctta
     2581 tgctcaagat cttttttatg atcaaaaaaa gtagctataa atgagcctgc tataaaagaa
     2641 ccaagaacga tttcaagttt tgtaataacc atagcaacaa tgatcagtat aaaaatggcc
     2701 atacaaaatc ttatatcttt ttcattttta tcttcccatg gcataagcac aactttaagc
     2761 tgaggatacc accaaaaaag cacaccaagc attttaaatc caagcaaaca aagccccaaa
     2821 aagatattaa gatataaaat actttgcgct acatcaataa tacctgttcc ttcgcgcaaa
     2881 aaagctcccg ctatagtcaa aagcacaata gaaatcacct cagctaaagt agctactatc
     2941 atagcaatat ttagccaata acactctttt ccaaaatcct taaaaagtaa agataaaagc
     3001 cctacactca tcacaggtat aatgataaca aatactaaag aaagtccaaa aatccatact
     3061 ataaaagaag ataaagtata aagtaaaaaa atataaaaaa aacttttttt ggcgacttct
     3121 ttacccatat taaaaaaggc tcttaaattt acctccatac ccgctataaa cattagataa
     3181 taaaaaccta catttgctaa aagtgcaaaa ttttcacttt ttcctatgaa accaaaatat
     3241 gctattattg cccctaaaat aatttcagta gctgaaagag gcaagcgtaa aatttttgca
     3301 atatgcggag aaaaaagtaa gcataaagct ataacaataa gaatttttag atcaattaaa
     3361 ccttgtggat caatgacact ctgatgcaaa agtaaatccc atttctttta attttattat
     3421 atcttgactt ggttcttcac ctttagtggt taaataatcc cctataacaa tagccccagc
     3481 acctgcttga aaaatttcat actgcctttc tcgcaacacc acttcacgcc cacctgctac
     3541 cattaccacg ctttgcggta aagcctcttt ggtatcacga acaattttta aggcttcatc
     3601 agcattaagt cttggaactt gtagttttaa attttcattt gctataaaaa aattaatagg
     3661 cgttgaaaaa ggctgtaatt cttgcaaaga ttttctaaaa cttagtctat cttcttcact
     3721 ctcacccata ccataaattc caccacaaca aagcataagt cctacttctt tagcgtttaa
     3781 attggtttga aatctacttt cccaagtatg agtggtgcaa atttgtggaa aaaattcctt
     3841 agaactttca agattgtgat tataagaaaa aattcctgct tttttaagtt ctttgagttg
     3901 ttccacgctt gccataccat tacaggcaat taaaagcaaa ttaggcactt ctttttgcac
     3961 agccttggca gcttcgcaaa catactcaag cttttcatca tcaagcccaa gtcctgccgt
     4021 aaccaaacaa aaacccaagg cttcattttt ctttgccatt tttgcttcta aaacgatttg
     4081 tgaaagttct ttacgacgat atttttgaat atctgttttt acatgagcgc tttgggtgca
     4141 gtatttacag tcttctgaac aatttccact cgctatattt gaaatagcac aaagcatgat
     4201 ttgcattcta atccttcatt tcttttttga ttttacactt taaacattct aagaatgtac
     4261 cttttttaag ctcttttatc actaaagttt cgccacactc ttcgcatttt tcttcacttg
     4321 gtttgtattt gcttataaaa ttgcattttg gataagcact acagccataa aatttaccac
     4381 gttttgaaaa gcgttctacg atttcacctt tttgacaact tggacaagta atgcctgtac
     4441 cattagcttt agcttttgcg gctgtatttt cgctttcgtt tttgctttca ctttttaaat
     4501 ttcttgaata cttgcatttt gggaaattta aacacgctac aaattctcca aaacgccctt
     4561 ttctaatagc aagctctccg ccacaatcag gacaactttc gcctagtttt gtgacagttt
     4621 tttgactagc tatttttgtt tttccttctt cgatttttct cataaaagga tagtaaaatt
     4681 cttttaaagt ttcttgccaa tctgccttat cttctgcaat ttcatctagg gtattttcaa
     4741 ggtttgaagt aaatttacta tctactatat cgctaaaatt tttctcaagc acttcggtta
     4801 cattaaaagc aacatcgcta ggaatgagtt gttttttatc tattgttaca taatcacggc
     4861 ttgtaagtat agaaatggtt ggtgcataag tagaaggacg acctatgcct aaactttcaa
     4921 gtttttttac aagtcctgct tctgaatacc ttgaaggtgg ttcggtaaaa tgtgagttca
     4981 tttctaaatt ttgcactttt aaattttggc ctattttaaa atttggcaaa attttatcct
     5041 tatccatatc accataaact ttataatatc catcaaaaag gatttttcta ccgcttattt
     5101 taaaaactgc tctatcattt tttacaaata cattttgagt ttgagagata gcaggactca
     5161 tctgacaggc taaaaagcga ttgtaaataa gtgtgtaaag ttttaactca tctttgtcta
     5221 aaaatttagc cgaaatttct ggagtaaaac ttaaatttgt agggcgtata gcttcatgag
     5281 cttcttgagc gcctttagtc tttgtagtat atacatttgc tttgcttgga agatagtctt
     5341 tgccaaaatt tgcttgtatg aattttcttg cattttctac tgcttctttg gctaaattta
     5401 aactatcggt tctcatataa gtaataaccc ccatcacgcc ttcatgggta tttactcctt
     5461 catagagctt ttgagctatc atcatggttt ttttagggtt aaaaccaagg cgattgctgg
     5521 cactttgttg taaagttgaa gtcataaaag gaggcggcgg agcgattttt ctttctttgc
     5581 tttcaatgtc acttatacta taaacttcat ttttacaagc ttctagtata agtttagcac
     5641 gatctttgtt ggtaatggta agtttttcta tcttggcttt atcaaactca actagttctg
     5701 catctaaatc tttttgaaaa atcatatcaa tactaaagta ttctaggggt acaaaggcac
     5761 gaatttcttt ttcacgatcg actatgatct ttaaagccgc actttgaaca cgcccagcac
     5821 taagtcctct ttgaattttt tgtcctaata aagggctgag cttataccct acaatgcgat
     5881 ctaaaagacg tctggtttgc tgagcattta cagagtgcat gtttaatttt cttggatttt
     5941 ttaaagcatt ttctatagcg cttttagtga tttcatgaaa aacaatgcgt ggtaaggtgt
     6001 tttcatcttt tcctatagct tttgcaatat gataggctat agcctctcct tctctatctt
     6061 catccgttgc aagatagact tctttggcat ctttggcttt gcttttaagt tctttaacta
     6121 aggcgctatg atcacttgtg attctatact cagggataaa ttcatcatct tctattttaa
     6181 tcccaaagct tgatttaggc aaatctctaa tatgtccttt agaagcgata acttcataat
     6241 cttttcccaa aaaatttcct atggttttag cttttgcagg agattctact atgattaaat
     6301 ttttcttcat tttgcaccct tgttaaataa aaagctgaat ttagctaaaa atatttaaaa
     6361 ttcta
//
LOCUS       DBBXPZ010000086         6354 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.088, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000086 DBBXPZ010000000
VERSION     DBBXPZ010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6354
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.088"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..958
                     /locus_tag="ACJFD7_001499"
     CDS             <1..958
                     /locus_tag="ACJFD7_001499"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860284.1"
                     /translation="TMPQYNYPRYKREIATNALSYLSVVPAMIDKGLDTLKLQENTDY
                     ELSSINNHYLTLANSTVGVDNTNARARNEITLKNDKDKEEIYILAQKDYKEEIGNNYE
                     QTIKNNKTSEVGALYTEFITLGHMQNIIGFKNVNVGAEYLENTLLSKDTNVGLSNTLN
                     VGISNEVNIGQNHEEKIGNDKRVIINNNLEQDIKNDFIQRIGHNKNETIKGSYVLQTN
                     QSIKFYSKQDLSIETNEYFKAEADDSISFKAKKNCSFTADNVNTMANQESVLTAQKQI
                     VSRVGNTTITQTKDKIILQVGTTQVIIDSKGLRVKGGDLRAD"
     gene            1024..1971
                     /locus_tag="ACJFD7_001500"
     CDS             1024..1971
                     /locus_tag="ACJFD7_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HGG0860285.1"
                     /translation="MKTLEDIKAMSYQEKDELEDLVLEIIDDNDLVKLKDILKDYPVK
                     ISCYELNIKDEDGDFPLFDPFNLIIRAAHACEDNNNDFSILDYLFDEYGLSLKDPKYN
                     FAFHDMKYIKEANEKYILMEEVEDDPCIYQNALIYDYILNADNPNSQIIKYLVNRGAK
                     FEVHDEGYSGRTPMHFWARRNNYELLELAIKGGANVDMQTLLDPKSEYNETLLFEAVK
                     EAETYRVTQLLIELGANVNFATPRTPLDDAKGSRNKKLLKDAGAMTSEQIRKKFNLPA
                     YDSSHCEIDGKDDMDLLGKYLDEYSKLLNDAIKKAKENG"
     gene            1964..3673
                     /locus_tag="ACJFD7_001501"
     CDS             1964..3673
                     /locus_tag="ACJFD7_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002903366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative toxin"
                     /protein_id="HGG0860286.1"
                     /translation="MGKGIKIDFAKVNFHIKEFQKVYILENCKLCFYSPFHLQTQNGK
                     EVKKIEKKGKSKIYLIDEDGKTVDIDKTSEQNKIKVREETRKKEEKSKNVLFSNDEKG
                     NDAINAYFGEKNIDTLNKAYEEREAKPLSRNTESFKDYDVFYDVYTSKDNKDNSVNKK
                     LGCGDGFEVNNGIAEVGAEFFDKCFEKGIYVLIPRLISLDKNEELHFDPVPLEDKGFV
                     VTDFRKGKKGEKNIDLSFQRSIAKIKNPNLTLQSPKEFLQALNENKEFTEDDKKEQAQ
                     AIKKACGKKADEITKILLKDDKSLKDIITDEKELKKKISDLQNNQNKSPKELSLLGRL
                     EFLQRNQDKAKDYKKTIKDLQNPQQASNDKQNDKTKSRTKNKQKQTTIPNQEEQKNKN
                     INSKDIGDAGEYAASMLFTKRSTRYLSNRRKIDANFNTHSFNHTIPDFLVTLNDYPTL
                     VEVKNVQDQALTEQISFELKLAREYELDYLFICNHYTKLIDNITNLEIFNKDNKNHKG
                     SRSGFIYHRHAHRSIKTIFKEMYLHHIKGAAPNKIIIKRLNLNNSANIEEELNKNKQI
                     QKN"
     gene            3684..4625
                     /locus_tag="ACJFD7_001502"
     CDS             3684..4625
                     /locus_tag="ACJFD7_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HGG0860287.1"
                     /translation="MKTLEDIKAMSYQEKDELEDLVLEIIDNNDLVKLKDILKDYPVK
                     ISCYELHFKNKDNEYPLFEPMNLILRAAFACEDNNNDFSILDYLFDEYGLSLKDPKYN
                     FYHSDMKYIKEANDKYILMEEVEDTIIYQNALIYDYILSADNPNSQIIKYLVNRGAKF
                     EVYNEDTNWTPMHFWVMQNNYELLELAIKGGANVDMQTRLIQESEYNETLLFEAVKEA
                     ETYRVTQLLIELGANVNFATPRTPLDDAKGSRNKKLLKDAGAMTSEQIRKKFNLPAYD
                     SSHCKIDGKDDMDLLGKYLDECSKLLNDAIKKAKESE"
     gene            4671..5135
                     /locus_tag="ACJFD7_001503"
     CDS             4671..5135
                     /locus_tag="ACJFD7_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860288.1"
                     /translation="MKNKKLLDDEYIQEVFKYYLKNDNYLKDALYGLKKYERRAFISS
                     ILSYEYKNLVENGNLKVDAKYKVTLPPNLIAVLEYDKSEFNGVNLRNFINDLEFELEH
                     IEMELYDDPADFEGGDYYNEDSDCDEDYTVEDWVEDQVSDIKDFLYALKDFK"
     gene            5132..>6354
                     /locus_tag="ACJFD7_001504"
     CDS             5132..>6354
                     /locus_tag="ACJFD7_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860289.1"
                     /translation="MKQTLSSNRVSFYLFSTKTFSDEKYLNAWSLKGERLNAKDWFEF
                     KQANKDKFYNKHLENTLKAMQEFKAYFSVDQFEGINLHGDDEWLDFLPSNYTQFYNRL
                     CRDKSKYILHRYYQKNDLAEIGMLKNLSPNFPFWDEKGENFSQNQIDIFIEKDNLAPC
                     FNKYDIYFNSSLELSFNFSDESLEYLINNYNHRINHTFTPKSQDEIQKELNLSKEDKI
                     ILELENMFLNLCKGISADYAFMDFSYFFVGYDHTLDSKNNTLKSYPINQDKLIHKRSF
                     KEYIEEYANTYFLNYYSKEFLNELDNQELNKDRLNYYLINYNKIPKNTEEENIQGILF
                     KQKDIDINFVNFIDYKDYVYKNKDDFWEFSAKENSILWEKFLSKNTLKPFPLNFDCSL
                     EEKLLYAKDEQLENIL"
BASE COUNT         2730 a          744 c          970 g         1910 t
ORIGIN      
        1 aacaatgccc caatataatt atccaagata taaaagagaa atcgctacaa atgcattgag
       61 ttatttaagc gtagttcctg ctatgattga taaaggttta gatacattaa aacttcaaga
      121 aaatactgat tatgaattaa gctctataaa caatcattat cttactttgg ctaattccac
      181 agtaggagtg gataacacca atgcaagagc aaggaatgaa attaccctaa aaaacgacaa
      241 agacaaagaa gaaatttata tcctagcaca aaaagattat aaagaagaaa taggtaataa
      301 ttatgagcaa accataaaaa ataataaaac ttcagaagtg ggagccttat ataccgaatt
      361 tattacttta ggacatatgc aaaatatcat aggttttaaa aatgtcaatg taggagctga
      421 atatttagaa aataccctac tttctaaaga tactaatgtg ggcttaagta atactttaaa
      481 tgtaggaatc agcaatgaag tcaatatcgg acaaaaccac gaagaaaaga taggaaacga
      541 caaaagagta ataatcaata acaatctaga gcaagatatc aaaaatgatt ttatccaaag
      601 aataggacat aacaaaaatg aaaccataaa aggttcttat gtgcttcaaa ccaatcaaag
      661 tataaaattt tattccaaac aagatctaag catagaaaca aatgagtatt tcaaagctga
      721 agctgatgat tctattagtt ttaaagccaa gaaaaattgc tcttttacag ctgataatgt
      781 aaatactatg gcaaatcaag aaagtgtttt aacagcacaa aaacaaatcg tttctagggt
      841 aggaaataca actattacac aaacaaaaga taaaattata ctacaagtag gaacaacaca
      901 agtgattata gatagcaaag gtttaagagt aaaaggaggt gatttaagag cggattaaaa
      961 gcaattttct taaaattaaa actaaaatca taaaaaaccc aatttacaaa gaaaggaaaa
     1021 acaatgaaaa ccttagaaga tatcaaagct atgagctatc aagaaaaaga tgaattagaa
     1081 gatttagttc ttgaaattat agatgataat gatttagtta agctaaaaga tattttaaag
     1141 gattatcctg taaaaatatc ttgttatgag cttaatatta aagatgagga tggagacttt
     1201 cctttatttg atccttttaa tctaataata agagctgcac atgcttgtga agataataat
     1261 aatgattttt ctattttaga ttatttattt gatgagtatg gtttaagttt aaaagatcct
     1321 aaatataact ttgcttttca tgatatgaaa tatatcaaag aagctaatga aaaatacatc
     1381 ttaatggaag aagtagaaga tgatccttgt atttatcaaa acgccctaat ctatgattat
     1441 atactcaatg ccgataatcc aaattctcaa atcattaagt atctagtcaa tcgtggagct
     1501 aaatttgaag tgcatgatga aggatattcc ggtaggactc ctatgcattt ttgggctaga
     1561 cgcaataatt atgaattatt agaactagcc attaaaggag gagctaatgt agatatgcaa
     1621 accttgcttg atccaaaaag cgaatacaat gaaacccttt tatttgaagc tgtaaaagaa
     1681 gcagaaacct atagggttac acagctttta attgaacttg gagctaatgt gaattttgct
     1741 accccaagaa ctcctttaga tgatgcaaaa ggatctagaa ataaaaagct tttaaaagat
     1801 gcaggagcaa tgacttcaga acaaatcaga aagaaattta atttaccagc atatgattct
     1861 tctcattgcg aaattgatgg aaaagatgat atggatttat taggtaaata tcttgatgaa
     1921 tattccaaac ttttaaacga tgctataaaa aaggctaagg aaaatgggta aagggataaa
     1981 aattgacttt gctaaagtca attttcatat caaagaattc caaaaagttt atatattaga
     2041 aaattgtaaa ttatgttttt acagtccttt tcatttgcaa acacaaaatg gaaaagaagt
     2101 gaaaaaaata gaaaaaaaag gcaaatctaa aatttatctt atagatgagg atggaaaaac
     2161 tgtagatatt gataaaactt cagagcaaaa caaaataaaa gtaagagaag aaacaagaaa
     2221 aaaagaagaa aaaagtaaaa atgtattatt tagcaatgat gaaaagggaa atgatgcaat
     2281 caatgcttat tttggtgaga agaatattga tacgctaaat aaagcctatg aagaaagaga
     2341 agccaagcct ttatcaagaa atacagaaag ttttaaagac tatgatgtat tttatgatgt
     2401 ttatacaagt aaagataaca aagataacag tgtaaataaa aaactaggat gcggtgatgg
     2461 ctttgaagta aataatggca tagctgaagt tggagcagaa ttttttgata aatgctttga
     2521 aaaaggaatt tatgttttaa taccaagatt aatatcttta gataaaaacg aagaattaca
     2581 ctttgatcct gtgcctttag aagataaggg ctttgtagtg actgatttta gaaaaggaaa
     2641 aaagggagag aaaaatatag atttaagctt tcaaagaagc atagctaaaa taaaaaatcc
     2701 taatttaact ttacaaagcc ctaaagaatt cctacaagcc ttaaatgaaa ataaagaatt
     2761 tacagaagat gataaaaaag agcaagcaca agctattaaa aaagcttgtg gaaaaaaagc
     2821 agatgaaata accaaaatct tgcttaaaga tgataaaagt ttaaaagata ttatcacaga
     2881 tgaaaaagaa ttaaagaaga aaataagtga cttacaaaat aatcaaaaca aatcacctaa
     2941 agaactaagc ctactaggca ggcttgaatt tttacaaaga aatcaagata aagctaaaga
     3001 ttataaaaaa acaatcaaag atcttcaaaa ccctcaacaa gctagcaatg ataagcaaaa
     3061 cgataagaca aagagtagaa caaaaaacaa acaaaaacaa accaccatcc caaaccaaga
     3121 agaacaaaaa aataaaaata tcaattctaa agacatagga gatgcaggtg aatatgctgc
     3181 ttctatgctt tttactaaaa gatcaactag gtatttatct aatagaagaa aaatagatgc
     3241 taattttaat acccatagtt ttaatcacac catacctgat tttttagtaa cgctaaatga
     3301 ttaccctacc ttagtagagg ttaaaaatgt ccaagatcaa gctttaacag aacaaataag
     3361 ctttgagtta aaactggcta gagaatatga gcttgattat ttatttatat gcaatcatta
     3421 cacaaaatta atagataata taactaatct agagatattt aataaagaca ataaaaacca
     3481 taaaggatca agaagtggtt ttatctacca cagacatgct cacagaagca taaaaacaat
     3541 atttaaagaa atgtatctac atcacataaa aggagcagca cctaataaaa ttatcataaa
     3601 aagattaaat ttaaataatt ctgctaatat agaagaagaa ttaaacaaaa acaaacaaat
     3661 acaaaaaaat taaaggaaaa acaatgaaaa ccttagaaga tatcaaagct atgagctatc
     3721 aagaaaaaga tgaattagaa gatttagttc ttgaaattat agataataat gatttagtta
     3781 agctaaaaga tattttaaag gattatcctg taaaaatatc ttgttatgag cttcatttta
     3841 aaaataaaga taatgaatac cctttatttg aacctatgaa tttaatatta agagctgcat
     3901 ttgcttgtga agataataat aatgattttt ctattttaga ttatttattt gatgagtatg
     3961 gtttaagttt aaaagatcct aaatataatt tttatcatag tgatatgaaa tatattaaag
     4021 aagctaatga taaatatatc ttaatggaag aagtagaaga taccattatt tatcaaaacg
     4081 ctctaattta tgattatata ttaagtgctg ataatccaaa ttctcaaatc attaagtatc
     4141 tagtcaatcg tggagctaaa tttgaagtgt ataatgaaga tacaaattgg actcctatgc
     4201 atttttgggt aatgcaaaat aattatgaat tattagaatt agccattaaa ggaggagcta
     4261 atgtagatat gcaaacccga cttattcaag agagtgaata caatgaaacc cttttatttg
     4321 aagctgtaaa agaagcagaa acctataggg ttacacagct tttaattgaa ctaggagcta
     4381 atgtgaattt tgctacccca agaactcctt tagatgatgc aaaaggatct agaaataaaa
     4441 agcttttaaa agatgcagga gcaatgactt cagaacaaat cagaaagaaa tttaatttac
     4501 cagcatatga ttcttctcat tgtaaaattg atggaaaaga tgatatggat ttattaggta
     4561 aatatcttga tgaatgctcc aaacttttaa acgatgctat aaaaaaggct aaagaaagtg
     4621 aatgagggaa tagaaattca ctttgctaaa ataaattata aggaaagata atgaaaaata
     4681 aaaaattatt ggatgatgaa tatatacaag aagtgtttaa atactatctt aaaaatgata
     4741 attatttaaa agatgcttta tatggtttaa aaaaatacga acgaagagct tttataagta
     4801 gcattttaag ctatgaatat aaaaatttag tagaaaatgg caatttaaaa gttgatgcaa
     4861 aatataaagt taccttgccg cctaatctta ttgctgtttt agaatatgat aaaagtgaat
     4921 ttaatggcgt aaatcttcga aattttataa atgatttgga atttgaatta gaacatatag
     4981 aaatggaact ttatgacgat cctgctgact ttgaaggggg agattattat aatgaagata
     5041 gcgattgtga tgaagattat acagtagaag attgggtaga agatcaagta agtgatatta
     5101 aagacttttt atatgctttg aaagatttta aatgaaacaa acattaagct ctaatcgagt
     5161 aagcttttat cttttttcta ctaaaacttt tagtgatgaa aaatatctta atgcttggag
     5221 cttaaaaggc gagcgtttaa atgccaaaga ttggtttgaa tttaaacaag ccaataaaga
     5281 caaattttat aataagcact tagaaaatac cttaaaagct atgcaagagt ttaaagctta
     5341 ttttagtgtt gatcaatttg aaggcataaa tctacatggt gatgatgaat ggcttgattt
     5401 tttgccttca aattatactc aattttataa tcgtttatgt agagataaaa gtaaatatat
     5461 tttacatcga tattatcaaa aaaatgattt ggcagagatt ggtatgctta aaaatctttc
     5521 tcctaatttt cctttttggg atgaaaaagg agaaaatttt tctcaaaatc aaattgatat
     5581 ttttatagaa aaagataatt tagcaccctg ctttaataaa tatgatattt attttaattc
     5641 ttcacttgag ctaagcttta attttagtga tgaaagctta gaatatttaa ttaacaatta
     5701 taatcacaga atcaatcata cttttactcc aaaaagtcaa gatgagatac aaaaagaatt
     5761 aaatttaagc aaagaagata aaatcatttt agaacttgaa aatatgtttt taaatctttg
     5821 taaaggcatc agtgctgatt atgcttttat ggatttttct tatttttttg taggatatga
     5881 tcatacttta gattctaaaa ataatacttt aaaatcttat cccattaatc aagataaatt
     5941 aattcataaa agaagtttta aagaatatat agaagaatac gcaaatactt actttttaaa
     6001 ttattattct aaagagtttt taaatgaact tgacaatcaa gaattaaaca aagatagact
     6061 taattattat cttattaatt acaacaaaat tccaaaaaac acagaagaag aaaacataca
     6121 aggcatactt tttaaacaaa aagatataga tatcaatttt gtaaatttta tagattataa
     6181 agactatgtt tataaaaata aagatgattt ttgggagttt tcagcaaaag aaaattctat
     6241 actttgggaa aaatttctaa gtaaaaatac cctaaaacct tttcctttaa attttgattg
     6301 ctctttagaa gaaaagcttc tttatgctaa agatgaacaa ctagaaaaca tact
//
LOCUS       DBBXPZ010000087         6314 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.089, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000087 DBBXPZ010000000
VERSION     DBBXPZ010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6314)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6314)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6314
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.089"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..934)
                     /gene="tupC"
                     /locus_tag="ACJFD7_001505"
     CDS             complement(<1..934)
                     /gene="tupC"
                     /locus_tag="ACJFD7_001505"
                     /EC_number="7.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:1901238 - ABC-type tungstate transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tungstate ABC transporter ATP-binding protein
                     TupC"
                     /protein_id="HGG0860290.1"
                     /translation="MIEISNLFFNYQNKEVLKIKNLKLDTSKISILMGANGSGKSTFL
                     RILKFLEGDFSKNISYFGNFKPNNKQKREIYLLFPEPILLNRSVRANFLFTLKTYGIK
                     EDIEERIKESLMFLNLDESLLSKHPNELSSGQSQKIAFAIALSVRAKYYLLDEPSAFL
                     DKNTTLLFKKAILKMHENFNTGFLIASHDKHFLDSLAQKKLYLHSGEILEFENTNVFE
                     LENQGVKFCNFIDFSNCKKYKDFKKPPSKIAIDPYKISFFNSKNIPKNNYDFILEKCY
                     IIALRSRKNDVFIRVSCMDKILEFALEKQEFLKFD"
     gene            complement(936..1622)
                     /gene="tupB"
                     /locus_tag="ACJFD7_001506"
     CDS             complement(936..1622)
                     /gene="tupB"
                     /locus_tag="ACJFD7_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1901238 - ABC-type tungstate transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tungstate ABC transporter permease TupB"
                     /protein_id="HGG0860291.1"
                     /translation="MDYIFDGFKQALFLLFNADESVISAIKTTLLSSSISIVLALLIG
                     FPLGFILGFFDFKFKCFIKLIIDTSLSFPTVAVGLILYALISSRGPLGEFGLLFTIKA
                     LILGQFILALPIVIALFSNLIENMNKKHFLLIKSFHLSPLKLVLTMIYELRFALISVV
                     ALAYGRIVAEVGVAMIVGGNIKYDTRTITTAISLETNKGEFASGIALALVLILIAFCL
                     NFITHKLKRT"
     gene            1701..2510
                     /gene="tupA"
                     /locus_tag="ACJFD7_001507"
     CDS             1701..2510
                     /gene="tupA"
                     /locus_tag="ACJFD7_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1901238 - ABC-type tungstate transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tungstate ABC transporter substrate-binding
                     protein TupA"
                     /protein_id="HGG0860292.1"
                     /translation="MKKIISLALALALSASAAELKMATTTSTDNTGLLDALKPLYEKE
                     SGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKEFMKKGFGVDRTPVMYNDFIII
                     ADKSLASKFKGKNLKESLELIKNEKLTFISRGDKSGTDNKEKSLWKNLGGVPEKQSWY
                     QQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGKPNLVIVNEGDDSLKNFYSVI
                     ATNPKHCKNVNYTEASKFIKWVTSDKTLNLIADFKLLNKPLFVIDAKTRKD"
     gene            2652..3419
                     /locus_tag="ACJFD7_001508"
     CDS             2652..3419
                     /locus_tag="ACJFD7_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HGG0860293.1"
                     /translation="MFKVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPC
                     VMDETLNLAKQNDVCIGAHPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAK
                     GMKIQHFKAHGALYNMAAIDENLALALCEAVASFDENIIFLGLSNSAMNEAAKKKGLR
                     YANEVFADRAYNDDGTLVSRKLEGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKA
                     DSICVHGDNAKALEFVKKIKENLKKEQIQICALENFI"
     gene            3429..4169
                     /gene="pxpB"
                     /locus_tag="ACJFD7_001509"
     CDS             3429..4169
                     /gene="pxpB"
                     /locus_tag="ACJFD7_001509"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing)
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HGG0860294.1"
                     /translation="MFSVHFSGSKALLLRFEQEISPQINAYVLSTEQRIQKALKKGEI
                     YGIDELVSTYASLLIYFNPCVLSLNSLLDFLEKIKKDIKLTEQNSSLCIEVPLCYDEE
                     FGLDLEFVCKHNQISKEELISLHTKPYYLVFMLGFMAGFPYLGGLDKRLFTPRLSSPR
                     AKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFDKEDEKNPTLLKAGMFLKFKA
                     ISKDEFFEIQEQVAKKVYQKEIYEYKNH"
     gene            4150..5115
                     /locus_tag="ACJFD7_001510"
     CDS             4150..5115
                     /locus_tag="ACJFD7_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HGG0860295.1"
                     /translation="MSIKIIEASINSSLQDFGRKKFAKFGIARSGAMDEDALRMANIL
                     LGNKQDEAGIELCLKGGKYEFLDENYFVLSGAEFEAKLDNQKIKTCKVYQANKGDILE
                     LDLAKIGFRGYLCVAGGFEVKSFLNSKSSDAKMGAGVFEGRALQKDDILNTHNTFIPF
                     NLEARECENPLFKSPKEPIIRVILGTNEDAFTQKGIETFLNTTYKVGLKSDRMAIYAE
                     SSESIEHKNSADIISDPAVFGSIQVPKSGIPIILMAGRQSTGGYTKIATVIENDLSLL
                     AQAKLGSSFKFQSISMQEALELYKQREMKFKAMDQKINLDFENLI"
     gene            complement(5112..6005)
                     /locus_tag="ACJFD7_001511"
     CDS             complement(5112..6005)
                     /locus_tag="ACJFD7_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HGG0860296.1"
                     /translation="MKESYLFILLFIAMFLWGSSWPTSKILANYTDTSIITFWRFFFV
                     VLGSFFVLNFLKIPLKIEKTALKWVLIAGVLNGLYAFVFFIAIKHGLAGKGGVLVTTM
                     IPIFSYLIFMIAIFFQKNKKSTHKITKSEILGLFLGLLSGFCLLNLGSLEDLFGKFNI
                     LFLTCSFIWALMAVFNHKAKGAHPLAINFYINLISILMFSWVLFDVKSYEIFHFEFKF
                     WISMFVVAFLSTIIGTSIYYYGIHILGSVKANSFVLITPASALICSYFILDEVPNALT
                     LLGCALAIGAIYFINIYGKKA"
     gene            complement(6023..>6314)
                     /locus_tag="ACJFD7_001512"
     CDS             complement(6023..>6314)
                     /locus_tag="ACJFD7_001512"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860297.1"
                     /translation="SFIPAFIFLLVLLNPYIIRISKIGNYNQSFALYNKTEVKELLNS
                     KHIPIFKENNATLFVKDLYIVSNLGEKYLIKNDQNETFTLNKQDIFSLLDKI"
BASE COUNT         2396 a          871 c          994 g         2053 t
ORIGIN      
        1 aatcgaattt taaaaattct tgtttttcta aggcaaattc taaaatttta tccatacaac
       61 ttacccttat aaaaacatca tttttcctac ttctaagtgc tataatataa catttttcta
      121 aaataaaatc ataattattt tttgggatat ttttagaatt aaaaaaagaa attttataag
      181 gatcaatcgc aattttactt ggaggttttt taaaatcttt atatttttta caattactaa
      241 aatctataaa attacaaaat ttcacacctt gattttctag ttcaaaaaca ttagtatttt
      301 caaattctaa aatttctcca ctgtgtaaat aaagcttttt ttgcgccaaa gaatctaaaa
      361 aatgtttatc atgacttgcg attaaaaaac ctgtattgaa attttcatgc attttaagaa
      421 tagctttttt aaataaaagt gtagtatttt tatccaaaaa agcacttggt tcatcaagta
      481 aataatactt cgctcttacg cttaaagcta tagcaaaagc tattttttga ctttgtcctg
      541 atgaaagttc attaggatgt ttacttaaaa gactttcatc taaatttaaa aacatcaaac
      601 tttcttttat gcgttcttca atatcttctt taatcccata agtttttaag gtaaataaaa
      661 aatttgccct tacactacga tttaacaaaa taggctctgg aaaaagcaaa taaatttcac
      721 gcttttgttt attattaggt ttaaaatttc caaaataaga aatatttttt gaaaaatctc
      781 cttctaaaaa ttttaatatt cttaaaaatg tagattttcc acttccattc gctcccatta
      841 agatgctaat tttacttgta tcaagtttta aatttttgat ttttaaaact tctttgtttt
      901 gatagttgaa aaaaagatta gaaatttcta tcattttatg ttcttttgag tttgtgcgtg
      961 atgaaattta aacaaaaggc aatgagaatt aaaaccaaag ccaaagctat accgctagca
     1021 aattcacctt tgtttgtttc aagagaaata gctgtggtta tggttctagt atcgtatttg
     1081 atatttccac ctactatcat cgctactcct acttctgcta caatgcgtcc ataagctagt
     1141 gcaacgacgc taatcaaagc aaagcgtaat tcataaatca tcgttaaaac aagttttaaa
     1201 ggacttaggt gaaaagattt tataagtaaa aaatgttttt tattcatatt ttctatcaaa
     1261 tttgaaaaaa gtgcgatcac tataggaagt gctaagataa actgccctaa aattaaagcc
     1321 tttatagtaa aaagcagtcc aaattctccc aaaggtcctc gacttgaaat cagtgcataa
     1381 agtataagtc ctactgcaac tgttggaaaa gaaaggctag tatctatgat aagttttata
     1441 aagcatttga atttaaaatc aaaaaaacct aagataaatc ccaaaggaaa acctataagc
     1501 aaagctaaaa ctatagaaat acttgagctt aaaagtgtag tttttatagc tgaaattacg
     1561 ctttcatcag cattgaaaag taaaaataaa gcctgtttaa aaccatcaaa aatataatcc
     1621 aaaaatatcc tttttaaaat aagtaatttt agcataatta tgctaaaata tttttttatg
     1681 taaatttata aggaaaaaaa atgaaaaaaa tcatttcttt agcccttgct ttagctttaa
     1741 gtgcaagtgc agcagaactt aaaatggcaa ctacaacaag cactgacaat acaggacttt
     1801 tagatgctct aaaacctctt tatgaaaaag aaagtggcaa taccttaaaa tgggttgccg
     1861 taggaacagg tgcggcttta aaaatgggtg aagattgcaa tgctgatgtg ctttttgtgc
     1921 attctccaaa ggctgaaaaa gaatttatga aaaaaggttt tggtgtagat agaactcctg
     1981 tgatgtataa tgattttatc atcatcgcag ataaatcttt agcttctaaa tttaaaggta
     2041 aaaatttaaa agaaagctta gaacttatca aaaatgaaaa gcttactttc atctcaagag
     2101 gcgataaatc aggcactgac aataaagaaa aaagcctttg gaaaaatctt ggcggtgttc
     2161 ctgaaaagca aagctggtat caacaaagcg gacaaggtat gttagcaagc attaaaatcg
     2221 ctgaagaaaa aaaaggtgtg attttaaccg atcgtggtac ttatatcaaa tatgaagcca
     2281 atgaaaaagg caaaccaaac ttagtcattg taaatgaagg cgatgatagt cttaaaaatt
     2341 tttattctgt tatagcgaca aatcctaagc attgtaaaaa tgtaaattat acagaagcta
     2401 gtaaatttat caaatgggta acaagtgata agactttaaa tctcattgct gattttaaac
     2461 ttcttaataa acctttattt gtaattgatg caaaaacaag aaaagactaa aaattaagca
     2521 ggttttaacc tgcttaaaat atcatttttt acttattgta acttttttat ttatttttca
     2581 aaacttttag cttatttaaa attcttcttt agatataata aaatcaataa ttaaatatac
     2641 aaggtcaaat aatgttcaaa gtggatttaa atagtgattt aggggaaagt tttggcgcct
     2701 ataaaatggg aatggatgaa gaaattttaa aatttgtaag ttcagtaaat gtcgcttgtg
     2761 gctttcatgc gggtgatcct tgtgtgatgg atgaaacctt aaatttagcc aagcaaaatg
     2821 atgtttgcat aggagcacat ccatcttatc ctgatctttt gggttttgga agacgcaata
     2881 tgcaaataag ctttgaagag gctaaaaact atgccttgta tcaactagga gctttatttg
     2941 gctttgctaa ggcaaaaggt atgaaaatac agcattttaa agcccatggg gcgctttata
     3001 atatggcagc cattgatgaa aatttagcct tagcactttg tgaggcagtg gcgagttttg
     3061 atgaaaatat tatttttcta gggcttagta attctgctat gaatgaagca gctaagaaaa
     3121 agggtttaag atatgctaat gaagtttttg cagatcgtgc ctataatgat gatggcactt
     3181 tagtttcaag aaaattagaa ggggcgttaa tacacgatga aaatttagct atcaaacgcg
     3241 tgataaaaat gataaaagaa agcaaagtta caagcataaa tggcaaagaa attgatttaa
     3301 aagccgatag tatttgtgtt catggggata atgcaaaagc tttagaattt gttaaaaaaa
     3361 tcaaagaaaa tttaaaaaaa gagcaaattc aaatttgtgc tttggaaaat tttatataag
     3421 ttttagcaat gtttagtgtg cattttagtg gaagtaaagc tttgcttttg cgttttgagc
     3481 aagaaatttc acctcaaatc aatgcctatg ttttaagtac agaacaaagg atacaaaaag
     3541 ccctaaaaaa aggtgaaatt tatggtattg atgagttggt aagtacttat gcaagtttgt
     3601 tgatatactt taatccttgc gtgctttctt taaattcttt gcttgatttt ttggaaaaaa
     3661 ttaaaaagga tatcaaactt acggagcaaa actcaagtct ttgtatagaa gttccacttt
     3721 gttatgatga agaatttggg ctggatttag aatttgtgtg caaacacaat caaatttcaa
     3781 aagaagagct tatatctctt cacactaaac cttattatct tgtttttatg ctaggtttta
     3841 tggcaggttt tccttatctt ggaggtttag ataaaagact ttttacccca cgcctttcaa
     3901 gccctagagc aaaaatagaa gctggaagtg taggtatagc cgataaacaa acaggagttt
     3961 atcccatatc aagtccaggg ggttggcaaa tcattgctag aacacctttg gaattttttg
     4021 ataaagaaga tgaaaaaaat cccactcttt taaaagcggg tatgttttta aaatttaaag
     4081 ccatttcaaa agatgaattt tttgagatcc aagagcaagt tgctaaaaaa gtctatcaaa
     4141 aggaaattta tgagtataaa aatcattgaa gcatctataa attcaagttt gcaagacttt
     4201 ggtagaaaaa aatttgctaa atttggcata gcaagaagtg gagctatgga tgaagatgct
     4261 ttaagaatgg caaatatctt gcttggaaac aaacaagatg aagcaggaat tgagctttgt
     4321 ttaaagggtg gaaaatacga atttttagat gagaattatt ttgttttaag tggagctgaa
     4381 tttgaggcaa agcttgataa tcaaaaaatc aaaacttgca aagtatatca agcaaataaa
     4441 ggcgatattt tagaacttga tttagcaaaa ataggttttc gtgggtattt atgcgtagcg
     4501 ggtggctttg aagtaaaaag ttttttaaac tctaaatcca gtgatgctaa aatgggagct
     4561 ggagtttttg aaggaagagc tttgcaaaaa gatgatattt taaatactca taatactttt
     4621 atacctttta atttagaagc tagagaatgt gaaaatcctc tttttaaaag ccctaaagag
     4681 cctattatac gcgttatttt aggaacaaat gaagatgctt ttacccaaaa aggcatagaa
     4741 acctttttaa atactactta taaagtaggt ttaaaaagcg atagaatggc aatttatgca
     4801 gaatctagtg aaagtataga gcataaaaac tcagcagata tcatctcaga tcctgcggtt
     4861 tttggaagta tacaagtgcc aaaaagtggt attcctatta ttttaatggc aggaagacaa
     4921 agcacaggag gctatacaaa aatagccacg gttatagaaa atgatctaag cttactcgca
     4981 caagctaagt taggttctag ctttaaattt caaagcatta gcatgcaaga agccttagaa
     5041 ctttataaac aaagagaaat gaaatttaaa gctatggatc aaaaaatcaa tcttgatttt
     5101 gaaaatttaa tctaagcttt tttaccataa atattgataa aatatatagc acctatagcc
     5161 aaggcacaac ctaacaaggt aagtgcattt ggcacctcgt ctagtataaa ataactgcaa
     5221 attaaagcac tagcaggagt gattaaaaca aaagaatttg ccttaacgct tcctaaaatg
     5281 tgaatcccat aataataaat actagttcct ataatagttg ataaaaaagc cacgacaaac
     5341 atactgatcc aaaatttaaa ttcaaaatga aaaatttcat aactttttac atcaaacaat
     5401 acccaagaaa acattaaaat agaaatgaga ttaatataaa agttaatcgc caaagggtga
     5461 gctcctttgg ctttatgatt aaacactgcc atcaaagccc aaataaaaga acaagttaaa
     5521 aataaaatat taaatttacc aaataaatct tctaaactcc ctaaatttag caaacaaaat
     5581 ccagataata aacctaaaaa taagcctaga atttcactct ttgtgatctt gtgagttgat
     5641 tttttgtttt tttgaaaaaa tatcgctatc ataaatatca aataagaaaa aataggaatc
     5701 atagtggtta ctaaaactcc tcctttgcct gccaagccgt gctttatagc gataaaaaat
     5761 acaaaggcat aaagcccatt taaaactcct gctatcaata cccattttaa ggcagttttt
     5821 tcgattttaa gaggaatttt taagaagttt aaaacaaaaa atgaacccaa tacaacaaag
     5881 aaaaaacgcc aaaaggtaat aatagaagta tccgtataat ttgctaaaat cttagatgtt
     5941 ggccaagatg agccccataa aaacatcgcg ataaaaagca agatgaacaa ataactctct
     6001 ttcatttttt ccttaacttt tattaaattt tatctaaaag actgaaaata tcttgtttat
     6061 ttagggtaaa agtttcattt tgatcgtttt taatcaaata cttttctcca agatttgaaa
     6121 ctatgtataa atcttttaca aataaagttg cattgttttc tttaaaaatg ggaatatgct
     6181 tggaatttaa taattcttta acttcggttt tattataaag tgcgaaactt tggttgtaat
     6241 tgcctatttt acttattcta ataatataag gatttaaaag cacaagtaaa aaaataaaag
     6301 ctggtataaa agat
//
LOCUS       DBBXPZ010000088         6311 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.090, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000088 DBBXPZ010000000
VERSION     DBBXPZ010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6311)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6311)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6311
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.090"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            108..1280
                     /locus_tag="ACJFD7_001513"
     CDS             108..1280
                     /locus_tag="ACJFD7_001513"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0860298.1"
                     /translation="MRNWSLSGVFIGYMGYYLVRNNITLSTPFIQNQLNLSKSDIGTI
                     TGSMLIAYGISKGAMSVISDKAGPKKYMALGLILCALVNVLLGFSNSFYAYVGFVIAL
                     GVFQGMGVGPSFITLANWYPKKERGIYTAVWNISHNIGGGIVAPIVSLSGFALAALLG
                     VSMANFNETYWHMNHFYTPAACAVIISLYALYAVKGNPKNEGLVDITEINEMRGIKTE
                     EIKAIETPNLSSFEIFYHYVLKNKNAWYVAWMDTFVYMVRFGLISWLPIYLLETKGFN
                     KEQIGIAFWLFEWAAIPSTLLAGYISDKIFKGYRMPPAIGAMVIIFFMIIGYFTSNNL
                     YMVIFFAAMAGCLVYIPQFLASMQTMEVVPAFAVGSCVGLHGFMSYVVGASLGTKA"
     gene            1544..2296
                     /gene="peb3"
                     /locus_tag="ACJFD7_001514"
     CDS             1544..2296
                     /gene="peb3"
                     /locus_tag="ACJFD7_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family glycoprotein adhesin PEB3"
                     /protein_id="HGG0860299.1"
                     /translation="MKKIITLFGACALAFSMANADVNLYGPGGPHTALKDIANKYSEK
                     TGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREA
                     IILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNF
                     RNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVV
                     AKEGASKETQDFIAYLSSKEAKEIFKKYGWRE"
     gene            2393..2618
                     /locus_tag="ACJFD7_001515"
                     /pseudo
     CDS             2393..2618
                     /locus_tag="ACJFD7_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343729.1"
                     /note="catalyzes the formation of lipid A disaccharide
                     from UDP-2,3-diacylglucosamine and
                     2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is
                     a precursor of lipid A that anchors LPS to the OM;
                     frameshifted; incomplete; partial in the middle of a
                     contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
     gene            2654..5116
                     /locus_tag="ACJFD7_001516"
     CDS             2654..5116
                     /locus_tag="ACJFD7_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HGG0860300.1"
                     /translation="MNYKKAFYSKLEDCYLGAKIKSSQNQAKNGFTNLLVIKEKYFQK
                     IKDYLDTQKLYTDTYNKLYNFFSTYLNETGTPFFYDTPMYKNIYARVYSNSKDTSLFY
                     KTQNLYYVKSDTIYNPLSLQSEDKKYTLNFLTDEYEQNADNNKSKINFYLQNIQDDNI
                     NIKVINSKNHDGTNVFKQNPSEFSDVFLKTLKNAQINIKEEELKKLFKTYKKQNEVDF
                     FIHKNAKEFLKEQFDLWLFSYVNDSITEWTKEKIDEINDLKQIAFDIIDLIADFENEL
                     KAIWLKPKFAKNVHYVFSLDTIKSYSNNADEILKSIYKDVNFNEQIAEWEELNFINDE
                     FDIKAINDEKYKFLPFDTKYLSEENYYKLLSAFDNLDEILNGELVKADNFQALNSLMP
                     KYQGKIDLIYIDPPFNTGSDFDYKDKFQDSTWLSLMHNRLELAKEFLSDKGNFYLHLD
                     ENADYFGRILLNEFFGEMECKKITFDTNATKDEEADLFGYKSFGNNFVLKSSTILFLK
                     KTNSIFNKLWKPNRNSSLLNLGQLDLIGISTIETPKKITDYEYYVQIWKNGKLCHEKI
                     DIKDEKIYPLGDIWNDLYSFTQSEMRVSENISFYSSQKPENMLRRIIQSSSDENSVVM
                     DFFVGSGTTLVVSHKLNRKYLGVEMGEHFYEKYLTFNKDTKQYEYRLGLLGRMKNVIA
                     GDIEFYAIDKKRRSSLSKMINFKGGGAFRYYELEGYEESLENCEYKLDENSLIDYRKS
                     RKLIKALKKGENICLDMNAYDKELDIFLTMSNLLGLKIKNIFIDNNGIKSCKFENDEV
                     INLENIDLIKYPKLKNLIWWEK"
     gene            5118..>6311
                     /locus_tag="ACJFD7_001517"
     CDS             5118..>6311
                     /locus_tag="ACJFD7_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="caspase domain-containing protein"
                     /protein_id="HGG0860301.1"
                     /translation="MKNIAILVGNSEYQNLNKLHFCRKDISSMQKILSLSKKFEIHIF
                     ENYQSEQLKSGLSKIIRELEKSKINELLFYYTGHGVFKEQFYYLPINFTDKQFETTSL
                     SNNELDDMLKSLDTEMVIKIIDACQSGQQYIKESDQMSVKKSLTQHSFKKCYFFFSSM
                     NNQSSMGDNKGSYFTNAIIESIVTHKTDSIRYADVQSYIADCFNGKNELQTPFFVHQS
                     NATEIFLSDLTSIQKFFENNDLMANNGEGIIQEIENDKIDIVEKLKTLSKKYIAKDVA
                     QKTIECIFDENNINNMFNDDIKLIYDIKIEKHNDYNIDNINKLYNEIEKNKKHFFINL
                     EYRQEAYTTTEWIPKKKNPYDITGRFSYDEFLGKNYEEKEVQKYRNIVNSIYLVDDIL
                     PIGIVI"
BASE COUNT         2403 a          761 c         1039 g         2108 t
ORIGIN      
        1 aaaaatataa agttagtaag gatggtttaa atatgtttga ttttttcaaa cctaaggcaa
       61 aagctattaa atttcctctt taggaaattt tacctagata ttacaaaatg agaaattgga
      121 gtttaagtgg ggtttttata ggatatatgg gatattatct tgtgcgaaat aatatcactc
      181 tttcaactcc atttatacaa aatcaactta atctcagtaa atcagacatc ggaacaatca
      241 caggctcaat gcttatagct tacgggatta gcaagggtgc aatgagcgtt ataagcgaca
      301 aagctggtcc taaaaaatac atggctttag gtcttatttt atgtgctctt gtaaatgttt
      361 tacttggttt ttcaaattct ttttacgctt atgtaggttt tgttatcgcg cttggggttt
      421 ttcaaggtat gggggtaggt ccttctttta tcactcttgc aaactggtat cctaaaaaag
      481 agcggggaat ttacacggcc gtttggaata tctcacataa tataggaggc gggatagttg
      541 ctcctatagt ttcgctttca ggttttgctt tagcagcatt attgggtgtg agtatggcaa
      601 attttaacga aacatattgg cacatgaatc atttttatac tcctgctgct tgtgcagtta
      661 tcattagtct ttatgcgctt tatgcagtta aaggaaatcc taaaaatgaa ggtttggttg
      721 atattactga aatcaatgaa atgcgaggga ttaaaacaga agaaatcaaa gctatagaaa
      781 ctccaaattt aagcagtttt gaaatttttt atcattatgt acttaaaaac aaaaatgctt
      841 ggtatgtggc ttggatggat acttttgttt atatggtgcg ttttgggctt atttcttggc
      901 ttcctattta cttgctagaa acaaaaggct ttaataaaga acaaataggt attgcctttt
      961 ggctttttga atgggctgct ataccttcta ctttacttgc aggatatatt tcagataaaa
     1021 tttttaaagg ctatagaatg cctcctgcta taggcgccat ggtgattatt ttctttatga
     1081 ttattggata ttttacttca aataatcttt atatggttat tttctttgca gctatggcgg
     1141 ggtgtttagt ctatatacca caatttttag caagtatgca aactatggaa gtcgttcctg
     1201 cttttgcagt aggatcttgt gtaggacttc atggctttat gagttatgta gtcggcgctt
     1261 cacttggaac aaaagcatag gttgggctgt ggattactat ggtagttgga atgctggtct
     1321 tatcatgctc cttagtgctt gtattctttg tatactttgt tctactttat gtcattttag
     1381 cgctaaaaag aagcatcaat aacaatttta acttttgctt gcaaaaatac caagcaaaag
     1441 ttagatttta ataatatttt tgttacatta taactattta ttaacatata atttctaaaa
     1501 tcttaccttc aatcaataaa aatttatcat aaaaggaaat actatgaaaa aaattattac
     1561 tttatttggt gcatgtgcct tagcttttag tatggcaaat gcagatgtaa acctttacgg
     1621 accaggtggc ccacacacgg ccttaaaaga tatagcaaac aaatatagcg aaaaaacagg
     1681 cgttaaagta aatgtaaatt ttggccctca agcgacttgg tttgaaaagg ctaaaaaaga
     1741 tgcagatatt ttatttggcg cttcagatca atcggcttta gctatagcga gtgattttgg
     1801 aaaagatttt aatgtgagta aaatcaagcc tttatatttt agagaagcca tcatacttac
     1861 tcaaaaaggc aatcctttaa aaatcaaagg tttaaaagat ttggctaata aaaaagtaag
     1921 aatcgttgtg cccgaaggtg ctggaaagag caatacttct ggaactggag tttgggaaga
     1981 tatgataggt agaactcaag atataaaaac catacaaaat tttagaaaca atatcgtagc
     2041 ttttgttcca aatagtggaa gtgcaagaaa gcttttcgca caagatcaag ccgatgcttg
     2101 gatcacttgg attgactggt caaaaagcaa tcctgacata ggaactgccg tagctataga
     2161 aaaagatttg gttgtttata gaacttttaa tgtggtagct aaagaaggtg cgagcaaaga
     2221 aacacaagat tttattgctt atttaagttc taaggaagct aaagaaattt ttaaaaaata
     2281 cggctggaga gaataaatct tcatacacgc tttttagcgt gtattcttcc ataacttctt
     2341 ttaattaagc taaaataaga taaaatgttt aaaatattga taaggaaatt ttttgaaaac
     2401 ctttctagtt tgtgctttag agccttcagc aaatttgcat ttaaaagaag ttttaaaagc
     2461 ttataaaaat ataagtataa agaaattgat ttagtgggaa tttatgatga gagtttatgc
     2521 aaaaatttga tttaaattct aaaccacttt atagctcaca tgagtttagt gctatgggtt
     2581 ttatagaagt tttacctttg atttttaagt caaaaaaaga tattatttta acttgcaaat
     2641 ataaaggtaa agtatgaatt ataaaaaagc attttattca aaattagagg attgttattt
     2701 aggtgcgaaa atcaaaagct cgcaaaatca agctaaaaat ggttttacaa atttacttgt
     2761 tataaaagaa aaatattttc aaaaaatcaa agactattta gatacacaaa agctttatac
     2821 agatacttat aataagcttt ataatttttt tagcacttat ttaaacgaaa caggaacgcc
     2881 gtttttttac gatacgccta tgtataaaaa tatctatgca agggtatatt caaactcaaa
     2941 agacacaagt cttttttata aaacacaaaa tttatactat gtaaaatcag atactattta
     3001 caatccttta agcttgcaaa gtgaagataa aaaatatact ttaaattttc ttaccgatga
     3061 gtatgagcaa aatgctgata ataataaaag taaaatcaat ttttatttgc aaaatataca
     3121 agatgataat ataaacataa aagtgataaa ttctaaaaat catgatggca caaatgtatt
     3181 taaacaaaac ccaagtgaat ttagcgatgt ttttttaaag actttaaaaa atgcacaaat
     3241 aaacataaaa gaagaagagc taaaaaagct ttttaaaact tataaaaaac aaaatgaagt
     3301 agattttttc atacataaaa atgcgaaaga atttttaaaa gaacaatttg atttgtggtt
     3361 gttttcttat gtgaatgata gcattactga atggactaaa gaaaagatag atgagatcaa
     3421 tgatctaaaa caaatcgctt ttgatatcat tgacttgata gctgactttg aaaatgagtt
     3481 aaaagctata tggctaaagc caaaatttgc taaaaatgtt cactatgtat ttagcttaga
     3541 tactattaaa tcatactcaa ataacgctga tgaaatttta aaatccatct acaaagatgt
     3601 aaattttaat gagcaaatcg cggaatggga agaattaaat ttcataaatg atgaatttga
     3661 tataaaagcc ataaacgatg aaaaatacaa attcttacca tttgatacaa agtatttaag
     3721 tgaagaaaac tactataaac ttttaagtgc atttgataat ttagatgaaa ttttaaacgg
     3781 agagcttgta aaagcagata attttcaagc acttaattct ttaatgccaa aatatcaagg
     3841 taaaatagat ctaatctaca tagatccgcc atttaacaca ggaagcgact ttgactacaa
     3901 agataaattt caagatagca cttggctttc tttaatgcac aatcgcttgg agttggcaaa
     3961 agaattttta agtgataaag gaaattttta tttgcatttg gatgaaaatg ctgattattt
     4021 tgggagaatt ttactgaacg aattttttgg agaaatggag tgtaaaaaaa ttacatttga
     4081 tacaaatgcc accaaagatg aagaagctga tttatttgga tataaaagct ttggtaataa
     4141 ttttgtttta aaaagctcaa ctattctttt tttgaaaaaa acaaatagca ttttcaataa
     4201 actgtggaag ccaaatagaa attcttcttt gttaaatttg gggcagcttg atttaatagg
     4261 aatttctaca attgaaacac ctaagaaaat aacagattat gaatattatg ttcaaatatg
     4321 gaaaaatggt aaattatgtc atgaaaagat tgatattaaa gatgaaaaaa tatatccatt
     4381 gggtgatatt tggaatgatt tgtattcttt tactcaatct gaaatgagag ttagtgaaaa
     4441 tatatctttt tatagctcac aaaaaccgga aaatatgtta agaagaataa tacagtctag
     4501 ttctgacgaa aatagtgttg taatggattt ttttgtaggt agtggaacta ctttggtggt
     4561 atctcataaa ttaaatagaa agtatttggg tgtggaaatg ggagagcatt tttatgaaaa
     4621 atatttgaca tttaataaag atactaaaca atacgaatat agactaggtt tgcttggaag
     4681 aatgaagaat gttatagctg gcgatattga attttacgct atagacaaaa aaagaagatc
     4741 atctctttct aaaatgataa attttaaagg tggtggtgct tttagatact atgagcttga
     4801 aggctatgaa gaaagtttag aaaattgtga atacaaactt gatgaaaatt cactcataga
     4861 ttatagaaaa tcacgcaaac tcataaaagc actcaaaaaa ggtgaaaata tatgccttga
     4921 tatgaatgct tacgataaag aattagatat atttttaacg atgtctaatc ttttaggact
     4981 taaaatcaaa aatattttta tagataacaa cggcataaaa tcttgcaaat ttgaaaacga
     5041 tgaggttata aatttagaaa atatagactt aattaaatat ccaaaattaa aaaatctaat
     5101 ttggtgggaa aaataaagtg aaaaatatag caattctagt gggaaattct gaatatcaaa
     5161 atttaaataa attacatttt tgtagaaaag atattagttc tatgcaaaaa atattaagct
     5221 tgagtaaaaa atttgaaatt catatttttg aaaattacca aagtgaacaa ttaaaaagtg
     5281 gactatcaaa aattattaga gaacttgaaa aatccaaaat caatgagttg ctattttatt
     5341 acactggaca cggagtattt aaagagcaat tttattattt accaattaat tttactgata
     5401 agcaatttga aacaacgagt ttatctaata atgaactgga tgatatgctt aaaagtttag
     5461 atacggaaat ggtaattaaa ataattgatg cttgtcaatc agggcaacaa tatatcaaag
     5521 aatctgacca aatgtctgtc aaaaaaagtt taactcaaca ttcttttaaa aaatgttatt
     5581 ttttcttttc ttctatgaat aatcaatctt cgatgggcga taataagggt agttatttta
     5641 caaatgctat tatagaatca atcgtaacac ataaaacaga ttctattcga tacgcagatg
     5701 ttcaatccta tattgccgat tgttttaatg gtaaaaatga acttcaaaca ccattttttg
     5761 tacatcaatc caatgcaact gaaatttttc tcagtgatct tacatccata caaaaatttt
     5821 ttgaaaacaa tgatctcatg gcaaataatg gcgaaggcat tatccaagaa atagaaaatg
     5881 ataaaatcga tatagtagaa aagcttaaaa ctttatctaa aaaatatata gctaaagatg
     5941 tagcgcaaaa aactattgaa tgcatttttg atgaaaataa tatcaataat atgtttaatg
     6001 atgacataaa gttaatttat gatataaaaa tcgaaaaaca caatgattat aatattgata
     6061 atatcaacaa gttgtataat gaaatagaaa aaaataaaaa acattttttt attaatcttg
     6121 aatatagaca agaggcttat actactacag agtggattcc aaaaaagaaa aatccatatg
     6181 atattacagg gcgtttttct tatgatgagt ttttgggtaa gaattatgaa gaaaaagaag
     6241 ttcaaaaata cagaaatata gttaattcta tttatttagt agatgatatt ttgccaatag
     6301 gtattgttat a
//
LOCUS       DBBXPZ010000089         6148 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.091, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000089 DBBXPZ010000000
VERSION     DBBXPZ010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6148)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6148)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6148
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.091"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..448
                     /locus_tag="ACJFD7_001518"
     CDS             <1..448
                     /locus_tag="ACJFD7_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HGG0860302.1"
                     /translation="SVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYE
                     EMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLL
                     AEFKKLNEAAEKESDTTTATFAQENIAKYEKSLWMIGATLQGACKM"
     gene            513..1550
                     /locus_tag="ACJFD7_001519"
     CDS             513..1550
                     /locus_tag="ACJFD7_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HGG0860303.1"
                     /translation="MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIF
                     NFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKIKI
                     PIILSTNIKDLNINGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKN
                     ILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKILKTSKDSVYQAIKKLENTYV
                     IYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEDFFYNKYFNF
                     YSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDSFFEQGVKFE
                     VISFDKFSLGF"
     gene            complement(1547..2278)
                     /locus_tag="ACJFD7_001520"
     CDS             complement(1547..2278)
                     /locus_tag="ACJFD7_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004040 - amidase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HGG0860304.1"
                     /translation="MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQIFFIKM
                     NEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQTNLEKLITIKNKYRIENLYDFVE
                     YKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHK
                     IKIFDSLQDSVYSYVLNLNRHFAYEKFRDARAKFASEGKEITGLEAIKTLDSYSERKG
                     YYINLITKIIKRYNLEKYDTNSNNT"
     gene            complement(2253..3002)
                     /gene="dapF"
                     /locus_tag="ACJFD7_001521"
     CDS             complement(2253..3002)
                     /gene="dapF"
                     /locus_tag="ACJFD7_001521"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HGG0860305.1"
                     /translation="MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGGDGFI
                     VILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGVGIIKAK
                     VNQDKVEVSLGKIKSVQNTFEELGKTWQLCDTGVPHLVHFCQNLDEFDTILCQKMRQK
                     YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPK
                     SGEEVGFTYKNEELFFEGKVKYCFEANYNFS"
     gene            complement(2999..3604)
                     /gene="coaE"
                     /locus_tag="ACJFD7_001522"
     CDS             complement(2999..3604)
                     /gene="coaE"
                     /locus_tag="ACJFD7_001522"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344902.1"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HGG0860306.1"
                     /translation="MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENA
                     LELEKIFSPFNLKNLLTKEKKIDRKILGEIVFNNKEAKKTLENFTHPKIRAKILEQMQ
                     ILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKVRLD
                     SQIDIEEKLKKADFIIKNTNSYVDFRQECVKVIQEISKGKM"
     gene            3665..4654
                     /gene="purM"
                     /locus_tag="ACJFD7_001523"
     CDS             3665..4654
                     /gene="purM"
                     /locus_tag="ACJFD7_001523"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004641 -
                     phosphoribosylformylglycinamidine cyclo-ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HGG0860307.1"
                     /translation="MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGA
                     FRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFL
                     DYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMA
                     EEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIGDKNLIDIL
                     LEPTRIYVCDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYT
                     IGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE"
     gene            4865..5488
                     /locus_tag="ACJFD7_001524"
     CDS             4865..5488
                     /locus_tag="ACJFD7_001524"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860308.1"
                     /translation="MHNLNEALFQKKIKEIRLKAIASIICGFLGIIPYLGVLFVLASW
                     ILFFIVLYDLKIYGGAKNLFKNFLISVGIGFFGILVNTSILFAMLKPRTGIFGGLYFN
                     QDNIFMAIAIFLVLHFAILALIFPFLKAFYYEIARTTKQKYFTYAFNTFYLGLLTLII
                     GIGLVFLLASLVFWILAWVKFKEFDEQELSNLEERLAKAQKRFLILI"
BASE COUNT         2049 a          801 c          943 g         2355 t
ORIGIN      
        1 gtcagttaca aaacaattat tacaaatgca agcagatgct catcatctat gggttaaatt
       61 tcataattat cactggaatg taaaaggttt gcaatttttt tctatacacg agtacacaga
      121 aaaagcttat gaagaaatgg cagaactttt tgatagttgt gctgaaagag ttttacaact
      181 tggcgaaaaa gctatcactt gccaaaaagt tttaatggaa aatgcaaaaa gtccaaaagt
      241 tgcaaaagat tgctttactc cgcttgaagt catagaactg atcaaacaag attatgaata
      301 tcttttagca gaatttaaaa aactcaatga agcagcagaa aaagaaagtg ataccacaac
      361 agctactttt gcgcaagaaa atatcgcaaa atatgaaaaa agtctttgga tgataggcgc
      421 tactttacaa ggtgcttgca aaatgtaatt taaggggctt tatgccccaa ttatacaaac
      481 taggttataa tatccttttt taaaggataa aattgaaagt acttaatttt ttttatgaaa
      541 accaccctaa atttgaagta agttatgaaa gaaaaaatca aatttcaaaa ccaaatatta
      601 tcataaaagg cccacgattt tgtggtaaaa aaacacttat ttttaatttt ttatctcaat
      661 ttaaagcaag tgaaattttg tttttagatt tatatgatac acgctttgaa aaacaaagtt
      721 tagaaagact tgctgatttt ttgaatgaaa atttacaaat taaaattctt tgcctttata
      781 atttggattt tatccctaat ttagaaaaaa ttaaaattcc catcatctta agtacaaata
      841 taaaagattt aaatataaat gggtttgaag aacttgaact tgattatttt gattttgaag
      901 aatttattag tgtaagtaag aaaaatttac ctataaataa tttagtaggt ctttttttgc
      961 aaagtggacg cagtaaattt ggagaaaaaa acatacttct aagacaaagc tttactcttt
     1021 tagaattaga aattttaaag tatttagctt taaatttggg tcagcaaatc agtatttcta
     1081 agatatttat agaacttaaa aaaatattaa aaacttcaaa agatagtgtt tatcaagcta
     1141 taaaaaaatt agaaaatact tatgtgatct atactttaaa acatgatgaa aaaaaacttc
     1201 aaaagattta ttttaaagat tttggcctaa gaaataatct ttgtatttca aaggattttt
     1261 cgcatttatt tgaaaattta gttttaagcg agttgtttaa atttaaagaa gatttttttt
     1321 ataacaaata ctttaacttt tatagccaaa tatctaaaat tgcttatatt tcaagtccaa
     1381 ctttagatat tgatttgatt aaattacgtg ctaagaaaat tttaccaaag gctttagaac
     1441 ttggaatttt tcatgtgatt tttatcactc tttcaagcga ggatagtttt tttgagcaag
     1501 gggttaaatt tgaagtcata tcttttgata aattttcact tggattttag gtgttgtttg
     1561 agtttgtatc gtatttttca aggttgtatc gtttgatgat ttttgtaata agattgatat
     1621 aatatccctt gcgttcagaa taagaatcta aagttttaat agcctctagt cctgttatct
     1681 ctttgccttc gcttgcaaat ttagctcttg catcgcgaaa cttttcataa gcaaaatgac
     1741 gatttaaatt taaaacataa gagtaaacac tatcttgcag actatcaaaa atcttaattt
     1801 tatgtttttt atctggatgt cttaaatcag gaattaaacc tttctcaccc caagtccatt
     1861 ctccaaaaag attatttgct tctcttgcga agcgacttgt acctgtagca ctttcaacta
     1921 aagcttgggc tatacccatg gattttggaa ttttttgaat acgtttttta tattctacaa
     1981 aatcataaag attttcaatg cgatatttgt tttttatcgt gataagtttt tcaagatttg
     2041 tttgatttga agtcctaaag cctgttttgt aagcatcttt aaaaaaggct tcgataaaag
     2101 ctctttcttg ttcaattttt ttaaagcttt gatcaaacat ttcattcatt tttataaaaa
     2161 aaatttgtct tttttgatct atatcaagtt tgtaatattc ctctccaaag ccatttttta
     2221 gatcatcagc aaaaagtggg attagaaaaa gactaagaaa aattataatt ggcttcaaaa
     2281 caatacttta cctttccttc aaaaaacaat tcttcatttt tatatgtaaa cccaacctct
     2341 tcaccacttt taggagttat tttaacttta ttttgtactt ttttatttaa aaatgccaga
     2401 taaaaacaag cccccattcc tgtgccacaa gctaaggttt catcttcaac tccgcgttca
     2461 taggtacgaa cttttaaatg attttcatct aaaattttta caaaattaac attggcatta
     2521 tatttttgtc tcattttttg acaaagtatt gtatcaaatt catctaaatt ttgacaaaaa
     2581 tgcactagat gtggaactcc agtgtcgcaa agttgccaag tttttcctaa ttcttcaaaa
     2641 gtattttgca cgctttttat tttgcctaaa gatacttcaa ctttatcttg atttaccttt
     2701 gcttttatta ttcctacacc ggttaaaaaa ctcatgttag gatttatttt gttaatatga
     2761 tgtgcaaaat gtgccgcagc ccttgagcca ttgccacaca tagcagccct tgagccatcg
     2821 ttattataaa attcccattc aaagtcgtat ttttcatgag gcaatatcac gataaagcca
     2881 tccccaccta tgccctcata acgattgcaa agttctttag ctaaagcact tctatcttct
     2941 tttctatcag catttgttat gacaaaatca ttcccacttg cacaatattt ataaaatttc
     3001 acatttttcc tttagaaatt tcttgtatta ctttaacaca ttcttgccta aaatcgacat
     3061 aagaattagt atttttaatg ataaaatctg cttttttaag tttttcttca atatctattt
     3121 gagaatcaag tctcactttt gcagcttcta agctgagctt atctctttgc atgattcttt
     3181 taaggcttaa ttctttaggt gtgtaaatta caatgacttt gcctaaattt tcataagcac
     3241 cgctttcaaa aaaaagagga atttctacaa aaaaagcttt attttcttta tctagaattt
     3301 gcatttgttc taaaatttta gctcgaattt taggatgagt gaaattttct aaggtttttt
     3361 tagcttcttt gttgttaaaa acaatttctc caaggatttt tctatcgatt ttcttttctt
     3421 ttgtgagtaa attttttaag ttaaagggag aaaaaatctt ttcaagttct aaagcatttt
     3481 catctaaaat tttatgagca attttatctg cactaatgct tttaaagcct aaagaattcg
     3541 ctatttctat aaaagtgctt ttaccacaag caattgaagc ggttacaaaa aaagcatttt
     3601 tcatcttatg ccttattaaa acttttttcg ttaaaatacc tttttagttc ttaaaggaaa
     3661 ataaatgaaa atttcatatg aagatgcagg cgtaagtata gataatggaa atgcctttgt
     3721 agaggctata aaacctttgg ttaaagaaac ttttaatgat aatgttgtag gcggaattgg
     3781 ttcttttgct ggtgctttta gaatgccaag tggttttaaa aagcctgtga ttttaggtgc
     3841 aacagatggt gttggtacca agcttcgctt ggcaattgat gctaaaaaat atgatactat
     3901 agggcaagat ttagtagcaa tgtgtgtgaa tgatttgatt tgtaattttg ctacgccttt
     3961 gtttttccta gattattatg ctacagccaa gctcgaagta gaagtagcaa aggctgttgt
     4021 atcaggcatt gccaagggat gtaagatggc aaattgtgca ttaatcggcg gagaaactgc
     4081 tgaaatgcct ggaatgtatg caaaagatga ttttgatctt gcgggttttg cagtgggtat
     4141 ggctgaagaa gatgagatcg atagaagtaa atttgttaaa aatggtgata ttttattggc
     4201 acttcctagt tcaggacttc attcaaatgg ttattcttta gctagaaaag tactttttga
     4261 aagtttaaaa ttaaaatttg atgacaagat aggggataaa aatttaattg atattttatt
     4321 agagcctaca aggatttatg tgtgtgattt tcttacatta aagccttata ttagtgctct
     4381 agctcatatt acagggggtg gtttagtaga aaatttacca cgcgttttgc ctcgtggtat
     4441 gggtgcaact atacgcaaac atcatcttaa aactcctgaa attttttata ctataggaca
     4501 ggctgtagaa gaaagcgaaa tgtatagaag ctttaacatg ggagtgggtt tagtaatggt
     4561 tgtagatcct tctaatgtaa gtaaggtttt agaaaattca gatgccttta ttatcggcga
     4621 aatttgcatt aatgaaggta ttgttttaga gtgaaaacaa attattatga ttatttatgt
     4681 gctaaaatgt atgtaatttt gcccataaaa gcccataaag acaaactaaa attttatctt
     4741 tcttatgtaa ataagaaaga taaaattttt agagttaatg tgtggaagtg ggcggttttg
     4801 ataaaaattg ccaaagatga taaaacgaaa tatttttgtt cgaatgtatt aaataaaggg
     4861 taaaatgcac aatttaaatg aagctttgtt tcaaaaaaag ataaaagaaa ttcgcttaaa
     4921 agcaatagcg agtattattt gtgggttttt aggtatcatt ccttatcttg gagttttatt
     4981 tgttcttgcg agttggattt tattttttat tgtgctttat gatttaaaaa tctatggtgg
     5041 tgctaaaaat ttgtttaaga atttccttat tagtgtaggg attggatttt ttggtattct
     5101 tgttaataca agtattttat ttgcaatgct aaagcctaga actggcattt ttggtgggct
     5161 ttattttaat caagataata tttttatggc tattgctata tttttagtat tacattttgc
     5221 tattttggct ttaatttttc cttttttgaa agctttttac tatgaaattg ctagaacaac
     5281 aaagcaaaag tatttcactt atgcttttaa taccttttat ttagggcttc ttactttgat
     5341 tatcggcata ggcttggtgt ttttgctagc aagtttggtt ttttggattt tagcgtgggt
     5401 caaatttaaa gaatttgatg agcaagaact ttcaaattta gaagaaagat tggcaaaagc
     5461 acaaaaaagg tttttgattt tgatttaaaa tggattaaaa tcacaatggc ttcatttata
     5521 attttaaact tgctcgtttt aacattttcg tttatattag aagttattag ctttgaagat
     5581 tttaggtttt actacacaaa aaaaaacttt attttacaca gccataatcc tagctttgct
     5641 tagtgtgttt ttgttttgta aaaagataaa aaattacaaa ctttttattt attttttcat
     5701 atggcaaggt ttaagtgttt ttggtagtca tcttcttttt attcctgatt ttatggtaga
     5761 tcaaccacca gaaattgtat atggaagttt aaacataata ttaagtctat gctatattat
     5821 ttttgctttt ttatttttta aaattttgat tcaaattaca aaggaaaaac ttttttatct
     5881 tatttttgca ttttatgttt gcataaaaat tttgataata ttaattttct ttatttttat
     5941 gatggttgat aactattata tatttacaaa aagtcctata aagatgctca tagataatta
     6001 taaattactt tttcaagttg tttatttcgt ttcattttta attgtttggc ttatgcttaa
     6061 aggacaaaaa aatgtaaaaa tatgttagaa tgatgaaaaa atactatttt acgtagatgt
     6121 ttattaggat atattcgtat gtcttaaa
//
LOCUS       DBBXPZ010000090         6135 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.092, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000090 DBBXPZ010000000
VERSION     DBBXPZ010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6135)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6135)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6135
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.092"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(8..577)
                     /gene="cdtC"
                     /locus_tag="ACJFD7_001525"
     CDS             complement(8..577)
                     /gene="cdtC"
                     /locus_tag="ACJFD7_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtC"
                     /protein_id="HGG0860309.1"
                     /translation="MKKIITLFFMFITLAFATPTGDLKDFTEMVSIRSLETGIFLSAF
                     RDTSKDPIDQNWNIKEIVLSDELKQKDKLADELPFGYVQFTNPKESDLCLAILEDGTF
                     GAKSCQDDLKDGKLETVFSIMPTTTSAVQIRSLVLESDECIVTFFNPNIPIQKRFGIA
                     PCTLDPIFFAEVNELMIITPPLTAATPLE"
     gene            complement(588..1385)
                     /gene="cdtB"
                     /locus_tag="ACJFD7_001526"
     CDS             complement(588..1385)
                     /gene="cdtB"
                     /locus_tag="ACJFD7_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin nuclease subunit
                     Cj-CdtB"
                     /protein_id="HGG0860310.1"
                     /translation="MKKIICLFLSFNLAFANLENFNVGTWNLQGSSAATESKWSVSVR
                     QLVSGANPLDILMIQEAGTLPRTATPTGRHVQQGGTPIDEYEWNLGTLSRPDRVFIYY
                     SRVDVGANRVNLAIVSRMQAEEVIVLPPPTTVSRPIIGIRNGNDAFFNIHALANGGTD
                     VGAIITAVDAHFANMPQVNWMIAGDFNRDPSTITSTVDRELANRIRVVFPTSATQASG
                     GTLDYAITGNSNRQQTYTPPLLAAILMLASLRSHIVSDHFPVNFRKF"
     gene            complement(1382..2188)
                     /gene="cdtA"
                     /locus_tag="ACJFD7_001527"
     CDS             complement(1382..2188)
                     /gene="cdtA"
                     /locus_tag="ACJFD7_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtA"
                     /protein_id="HGG0860311.1"
                     /translation="MQKIIVFILCCFMTFFLYACSSKFENVNPLGRSFGEFEDTDPLK
                     LGLEPTFPTNQEIPSLISGADLVPITPITPPLTRTSNSANNNAVNGINPRFKDEAFND
                     VLIFENRPAVSDFLTILGPSGAALTVWALAQGNWIWGYTLIDSKGFGDARVWQLLLYP
                     NDFAMIKNAKTNTCLNAYGNGIVHYPCDASNHAQMWKLIPMSNTAVQIKNLGNGKCIQ
                     APITNLYGDFHKVFKIFTVECAKKDNFDQQWFLTTPPFTAKPLYRQGEVR"
     gene            2301..2534
                     /locus_tag="ACJFD7_001528"
     CDS             2301..2534
                     /locus_tag="ACJFD7_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4492 domain-containing protein"
                     /protein_id="HGG0860312.1"
                     /translation="MYLKHLYFSISQIFNFYKEGFKNLTLGKTLWKIIFIKLFVMFVI
                     LKLFIFDVNFNSIFKSDKEKSTFVLKNLTLEGK"
     gene            2535..4097
                     /locus_tag="ACJFD7_001529"
     CDS             2535..4097
                     /locus_tag="ACJFD7_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0070069 - cytochrome complex [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019646 - aerobic electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HGG0860313.1"
                     /translation="MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVK
                     TKNERWKKITKFWLSLFAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEG
                     IMAFFLEATFFAVMFFGWDKVSKDFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMS
                     FNPDTARNEMQSFFEVALSPVAISKFLHTIGSGYVISALFVMGISAWFMLKGRHIIEA
                     KKSLVVGASFGLVCSIFLFFSGDESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGIL
                     NPKKTIDNNESVFLFDITIPYALSILGNRDPNSFVPGIEDLIYGNESKGIEPMQNRID
                     RGKIAIQALKDYKLAKENNDTIAMANHKSILETHFKDFGYGYLEKPSDTIPPVGLTFY
                     SFHIMVALGSFFFLLFIVTLYLTMANDIEKFRKVLWVCLLSIPLGYIAAEAGWIVAEV
                     GRQPWAIQDLLPVHIAATQLGKVNVQISFWIFAVLFTALLIAEVKIMLTQIKKGFDAH
                     AGHTPLMGKGEK"
     gene            4097..5221
                     /gene="cydB"
                     /locus_tag="ACJFD7_001530"
     CDS             4097..5221
                     /gene="cydB"
                     /locus_tag="ACJFD7_001530"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016682 - oxidoreductase activity, acting
                     on diphenols and related substances as donors, oxygen as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HGG0860314.1"
                     /translation="MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKD
                     ELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQ
                     AVAYEYRKKENNVYGSKTYEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQ
                     NPLHGLELLLNPFNYLLGLALVFLARLLGAAYFINNINDENIKIRAMKKLMINSILFL
                     PFFLGFLAWIFLKDGFSVDANGVVSMSANLYLYNFLNQMIFAVLLAIGVILVLLGMFQ
                     GAKGCSKAIFTLGLGTVLTVFALLSSIGLGQSAFYPSLSDLQSSLTLKNASSSYYTLS
                     VMAYVSLLVPFVLAYIIYVWNAMDKVKITREEIANDDHAY"
     gene            complement(5415..6110)
                     /locus_tag="ACJFD7_001531"
     CDS             complement(5415..6110)
                     /locus_tag="ACJFD7_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HGG0860315.1"
                     /translation="MKTIGIIGGMSFESTITYYKTINQAINDKLKSLNSAKILLYSVN
                     FEEIENLQSQDKWQEAAQILTQCAKKLELAGANFIIIATNTMHKVFDEIQQNINIPIL
                     HIAKSSAKALKQENIQKIGLLGTKYTMTQDFYKKMLIEENISVITPSDEDIKIVNDII
                     FNELCKGEIKQDSKEKYLNIIKKLQEKGAKGVLLACTEIGLLISKNDTNIKIFDTSLI
                     HALDAANEALKDL"
BASE COUNT         1925 a          920 c         1038 g         2252 t
ORIGIN      
        1 aaaaatctta ttctaaaggg gtagcagctg ttaaaggtgg ggttataatc attagttcat
       61 ttacttcagc aaaaaaaata ggatctaggg tgcaaggggc tattccaaag cgtttttgta
      121 taggaatatt tggattaaaa aaagttacta tacattcatc agattccaaa actaaagaac
      181 gaatttgcac agctgaagtt gttgttggca ttatagaaaa tacagtttct aatttaccat
      241 cttttagatc atcttgacaa gattttgctc caaaggttcc atcttctaag atggctaaac
      301 aaagatcgct ttcttttgga tttgtaaatt gcacataacc aaaaggaagt tcatcagcta
      361 atttatcttt ttgttttaac tcatcgctta aaacaatttc tttaatattc caattttgat
      421 caataggatc ttttgaggta tccctaaagg cgcttaaaaa aattcccgtt tctaagcttc
      481 ttatagaaac catttcggta aaatctttca aatctccagt aggagttgca aaggctaaag
      541 ttataaacat aaaaaacaaa gtaataattt ttttcatatt aaatgtccta aaattttcta
      601 aaatttactg gaaaatgatc tgaaactata tgagatctta aacttgcaag cattaaaatc
      661 gcagctaaaa gcggtggagt ataggtttgt tgtctatttg aatttcctgt aattgcataa
      721 tcaagagtcc ctccgcttgc ttgagttgcg ctagttggaa aaaccactct aattctattt
      781 gctaattctc tatccactgt acttgttata gtagaaggat cacggttaaa atcccctgct
      841 atcatccagt taacttgagg catatttgca aaatgtgcat ctacagctgt gataattgct
      901 cctacatctg ttcctccatt agctaaagca tggatattga aaaaagcatc atttccattg
      961 cgaattccta taatgggtct tgaaactgta gtaggtggag gtaaaacaat cacttcttca
     1021 gcttgcattc ttgaaactat agctaaattt acacgattag ctcctacatc aacgcgagaa
     1081 taataaataa aaaccctatc aggccttgaa agagttccta aattccactc atattcatca
     1141 ataggtgttc caccttgttg cacatggcgt cctgttggag tggctgttct tggtaaagtt
     1201 cctgcttctt gtatcattaa gatatctaag gggtttgctc cacttacaag ttgtcttacg
     1261 ctaacactcc atttgctttc tgtggctgcg gatgagcctt gcaaattcca agtgccaaca
     1321 ttaaaatttt ctaaatttgc aaaagcaagg ttaaaagata aaaataaaca tataattttt
     1381 ttcatcgtac ctctccttgg cgatataaag gttttgcggt aaaaggcgga gtagttaaaa
     1441 accattgttg atcaaaatta tctttttttg cacactctac ggtaaaaatt ttaaaaacct
     1501 tgtgaaaatc accataaaga tttgtaatag gtgcttgtat gcattttcca tttcctaaat
     1561 ttttaatttg aaccgctgta ttgctcatag ggataagttt ccacatttgt gcgtgattgc
     1621 ttgcatcgca aggataatgg acaattccat taccataagc attaagacaa gtattggttt
     1681 tggcattttt aatcattgca aaatcattag gataaagcaa aagttgccaa actctagcat
     1741 cgccaaatcc tttactatcg attaaagtat agccccaaat ccaatttcct tgtgctaaag
     1801 cccaaaccgt taaagctgct ccgctagggc ctaaaatggt taaaaaatca gaaaccgcag
     1861 ggcgattttc aaaaattaaa acatcattaa aagcttcgtc tttaaagcga ggattgatcc
     1921 catttactgc attattgttg gcactattgc ttgttctagt taaaggtggg gtaataggag
     1981 taataggtac taaatcagca ccgctaatta aacttggaat ttcttgattg gtaggaaaag
     2041 taggttcaag tcctagtttt aaaggatcag tatcttcaaa ttcgccaaat gaacgcccca
     2101 aaggatttac attttcaaat ttagaagaac atgcataaag aaaaaaagtc ataaaacaac
     2161 ataaaataaa aactataatt ttttgcatta aaaaccttga tatgtattta aatttttaag
     2221 aaaataataa cataaatttc attataattt tccgcttttt aaaaatgttt tattttgttg
     2281 tttttaaagg tagaatttac atgtatctta aacacttata ttttagcatc tctcaaattt
     2341 ttaattttta caaagaaggt tttaaaaatt taactcttgg aaagaccctt tggaaaatta
     2401 tttttatcaa actttttgtt atgtttgtga ttttaaaact ttttattttt gatgtaaatt
     2461 ttaattctat ttttaaaagc gacaaagaaa aaagcacttt tgtactcaaa aatcttacac
     2521 tcgaaggaaa ataaatgaac gaacttagta gcgttgattg gtcaagagcg cagtttgcct
     2581 taactgcact ttatcatttt ttgtttgtgc ctttaacctt aggcttgtct tttatgattg
     2641 ctatcatgga aaccatctat gtaaaaacta aaaatgaaag atggaaaaaa atcaccaaat
     2701 tttggctttc attatttgcc ataaattttg ctatcggtgt ggctacaggc attataatgg
     2761 aatttgaatt tggaacaaac tgggcaaatt atagctggtt tgtgggcgat atttttggcg
     2821 cacctttggc ggttgaaggt attatggcat ttttcttaga ggctactttt tttgcagtta
     2881 tgttttttgg ttgggataaa gtgagtaaag attttcactt actttcgact tggtgtgtgg
     2941 ctataggaag caatctttct gctttttgga ttttagtagc aaatggttgg atgcaatatc
     3001 ctgtaggaat gagctttaac cctgatacag caagaaatga aatgcaaagc ttttttgaag
     3061 tagcactttc tcctgtagct atttcaaaat ttttacatac cataggcagt ggttatgtga
     3121 tttcagcttt atttgtaatg ggaatttcag cttggtttat gttaaaggga cgccatatta
     3181 tcgaggctaa aaaaagctta gttgtaggag ctagttttgg tttggtttgt tcaatctttt
     3241 tatttttcag tggagatgaa agtgcttatc gtgtaactca aactcaacct atgaaacttg
     3301 cagctatgga aggagtttat caaggtgagc atcgtgcagg gcttgtgcct tttggaattt
     3361 taaaccctaa aaaaaccata gataataacg aaagtgtgtt tttatttgac attactatac
     3421 cttacgctct ttctatacta ggaaaccgtg atccaaattc ttttgttcca ggaattgaag
     3481 atttgatcta tggaaatgaa agcaaaggta tagaacctat gcaaaatcgt atcgatagag
     3541 gaaaaatcgc tatacaagct ctaaaagact ataaacttgc taaagaaaac aatgatacaa
     3601 tagctatggc aaatcacaaa tccattttag aaactcattt taaagatttt ggttatggat
     3661 atttagaaaa accaagcgat actattccac ctgtgggttt aactttttat agctttcata
     3721 tcatggttgc tttaggaagt tttttctttt tacttttcat cgttacgctt tatcttacca
     3781 tggcaaatga tattgagaaa tttagaaaag tactttgggt gtgtttgtta tccattccat
     3841 tgggttatat tgccgctgaa gcaggttgga ttgttgctga agtaggtaga caaccttggg
     3901 caattcaaga cttgcttcct gtacatatcg cagcaacaca acttggaaaa gtcaatgttc
     3961 aaatttcatt ttggattttt gcagtacttt ttacagcctt attgattgca gaagttaaaa
     4021 tcatgcttac tcagattaaa aaaggttttg acgcacatgc aggacatact ccacttatgg
     4081 gcaaaggaga aaaataatgt tttttggttt agaacttgaa ggtttgcaaa tttattggtg
     4141 gttgatttta agtttacttg gtggactttt agtttttatg ttttttgttc aaggtggaca
     4201 gactttaatc gatgagctta gcaaggatga gcttgaaaaa actatgctag ttaattcttt
     4261 agggcgtaaa tgggagcttg gttttacaac tctcgtactt tttggcggag cagcttttgc
     4321 agcttttcca cttttttata gtacaagttt tggcggagct tattgggctt ggctttgtat
     4381 tttattttgt tttattttac aggctgtggc ttatgaatat cgcaaaaaag aaaataatgt
     4441 ttatggctct aaaacctatg aaatttttct taaaattaat ggttatttag gtgtgttttt
     4501 aatcggagtt gcagtaagta gcttttttag cggttctgaa tttatcttaa atgagcataa
     4561 ttttgtttct tggcaaaatc ctttgcacgg cttagaactt ttacttaatc cttttaatta
     4621 tctcttaggc ttagctttag tatttttagc aaggctttta ggcgcagcgt attttataaa
     4681 caatatcaat gatgagaata tcaaaataag agctatgaaa aaacttatga tcaatagtat
     4741 tttattttta ccttttttct taggtttttt agcgtggatt ttcttaaaag atggttttag
     4801 tgtagatgca aatggagttg taagcatgag tgcgaattta tatttatata atttcttaaa
     4861 tcaaatgatt tttgctgttt tgcttgctat cggtgtgatt ttagtgcttt taggtatgtt
     4921 tcaaggagca aaaggttgct ctaaagctat ttttacccta ggacttggaa cggttttaac
     4981 agtttttgct ttattatcaa gcattggttt aggtcaaagt gctttttacc catctttaag
     5041 tgatttgcaa agttctttaa ctttaaaaaa tgcaagttca agctattata ctctaagcgt
     5101 catggcttat gtgtctttac ttgtaccttt tgttttagct tatattatct atgtttggaa
     5161 tgcaatggat aaagtaaaaa ttacacgcga agaaatcgca aatgatgatc acgcatatta
     5221 aggagaaaaa atgttacatg ctttgttttt attggcttgg cctttagtaa tttatctgag
     5281 ctataaattt ataatgctaa atatcaatca attagaaaaa gatagcaaac tataaagcaa
     5341 gataagattt aaaccgatat aagtataaat cttttcaaaa tattgcaatt tgcccatttt
     5401 tgggcatctt ttaatcataa atcttttaaa gcttcattag cagcatcaag ggcgtgaata
     5461 aggcttgtgt caaaaatttt gatatttgta tcatttttag atattaataa accaatttca
     5521 gtgcaagcta aaagcactcc ttttgcccct ttttcttgta gtttttttat aatatttaaa
     5581 tatttttctt tagaatcttg cttgatttca cctttgcaaa gctcattaaa aatgatatca
     5641 ttaacgattt ttatatcttc atcactagga gtaataacgc taatattttc ttcaatcagc
     5701 atttttttat aaaaatcctg cgtcattgtg tatttagtac ccaataaacc aattttttgt
     5761 atgttttctt gttttaaagc cttagcagaa ctttttgcaa tatgtaaaat agggatattt
     5821 atattttgtt gaatttcatc aaaaacctta tgcatagtat tagttgcaat tattataaaa
     5881 ttagcccctg caagttctaa ttttttagca cattgagtca aaatttgtgc agcttcttgc
     5941 catttatctt ggctttgtaa attttctatt tcttcaaaat taacactgta aagtaaaatt
     6001 tttgcagaat ttaaagattt taatttatca tttatagctt gatttattgt tttataataa
     6061 gtaatagtgc tttcaaaact cattccgcct ataataccaa tggttttcat ttttctcctt
     6121 aagaattaat ttttg
//
LOCUS       DBBXPZ010000091         6115 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.093, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000091 DBBXPZ010000000
VERSION     DBBXPZ010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6115)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6115)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6115
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.093"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            22..594
                     /gene="folE"
                     /locus_tag="ACJFD7_001532"
     CDS             22..594
                     /gene="folE"
                     /locus_tag="ACJFD7_001532"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HGG0860316.1"
                     /translation="MQKKFEDCVKTMLEIIGENPNREGLIKTPNRVFKAYEFLTSGYT
                     QNVKEILNDALFESSNNEMVLVRDIEFYSLCEHHLLPFFGRAHVAYIPNKKVVGLSKI
                     PRLVEVFARRLQIQEQLTEQIAQALMENVDAKGVGVVIEARHMCVEMRGVQKANSTTT
                     TSALRGIFLKNEKTREEFFSLINSAKQVRF"
     gene            594..1979
                     /gene="fliI"
                     /locus_tag="ACJFD7_001533"
     CDS             594..1979
                     /gene="fliI"
                     /locus_tag="ACJFD7_001533"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030257 - type III protein secretion
                     system complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0030254 - protein secretion by the type III
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HGG0860317.1"
                     /translation="MNLEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVK
                     LVSNENENLNTLAMVVEIKEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGR
                     VVDPFMRPKDGKGAIEATKYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQK
                     LGIFAGSGVGKSTLMGMIVKNSKAPIKVVALIGERGREIPEFIQKNLGGKLDDTVIIV
                     ATSDDSALMRKYGAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTT
                     KGYPPSVLSLLPQLMERTGKEEGKGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVL
                     SRELTDFGIYPPINIQNSASRVMSDIISPEHKLWARKFKRLNSLLKENEVLLRIGAYQ
                     KGSDKELDEAISKKEFMQKFLGQNPEESFEFNQTLELLSQIDTPNTPLPPTQNINVGS
                     ASATLPNPNLK"
     gene            complement(1982..3319)
                     /gene="purF"
                     /locus_tag="ACJFD7_001534"
     CDS             complement(1982..3319)
                     /gene="purF"
                     /locus_tag="ACJFD7_001534"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HGG0860318.1"
                     /translation="MCAVVGVINSKNASTYAYYALFAMQHRGQEASGISVSNGKNIKT
                     IKAKGEVSQIFNPDNLKTLEGEIAIGHNRYSTAGNSSLNDAQPIAATSVLGDIALAHN
                     GNLVNKEEVRSRLIQDGAIFQTNMDTENVVHLIARSKQESLKDRFIESLKECIGAYCF
                     VLASKDKLYVVRDPHGVRPLSLGRLKDGGYIVASETCAFDLIEAEFIRDVKPGEMLIF
                     TQGNDKFESIELFSQTPRICAFEYIYFARPDSIVEGKSVYEVRKKMGEALAKKFAYKA
                     DFVVPVPDSGVSAAIGFAQYLQIPLEMAIVRNHYVGRTFIEPTQELRNLKVKLKLNPM
                     RKVLEGKEIVVIDDSLVRGTTSKKIISLLRAAGASKIHLAIACPEIKFPDTYGIDTPT
                     FEELISANKNAEEVREYVEADTLSFLSIEELTQSIGDERKYSLISFDGDYFIK"
     gene            complement(3321..4049)
                     /gene="dapB"
                     /locus_tag="ACJFD7_001535"
     CDS             complement(3321..4049)
                     /gene="dapB"
                     /locus_tag="ACJFD7_001535"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HGG0860319.1"
                     /translation="MIKIGIYGAKGRMGKQIEECLKSETQARISILYDKGGNLGELFE
                     KSDVIIDFSSPSGTHELLNYARTMPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNM
                     SLGVAVLNYLASKASQMLRNFDIEILEMHHRHKKDAPSGTAMTLAQSVAKARNLELEK
                     VRVSGRDGIIGERSKDEIAVMSLRGGDIVGRHTVGFYEDGEFLELNHTATSRATFAKG
                     AIKIAIWLSKQEAKMYSINDFLGI"
     gene            complement(4112..5293)
                     /locus_tag="ACJFD7_001536"
     CDS             complement(4112..5293)
                     /locus_tag="ACJFD7_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HGG0860320.1"
                     /translation="MSLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAG
                     SGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKILDNYKNSLYKPLIFIDEIHRLSKT
                     QQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGAKELETLLLRVQE
                     KMKFSIDKEAKDFLLKSADARAMLNLLEFVLVLDEKHISLENLKKLRNTINSEGVSSK
                     DTHYILASAMIKSLRGSDVDAAIYYLARLIDAGESADFIARRLVIFSSEDVGNADPNA
                     LNLAVSTLDAVKNIGYPEARIILAQCVVYLASTIKSNASYKAINEALNYVKNNEALEI
                     PNYLNNNHQEKQNYLYPHDFGGWVEQKYLSKNLKFYHSKGLGEEAKLLDNLYKLKNHK
                     A"
     gene            complement(5293..>6115)
                     /locus_tag="ACJFD7_001537"
     CDS             complement(5293..>6115)
                     /locus_tag="ACJFD7_001537"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860321.1"
                     /translation="LKNNKLGTFTLKLHDNNSKIFLNIKDINLSNEGGDTIINGGYIE
                     VLMNKNLEIKNMKIHFDMINFSQFYTKFVLQNLNYEQFFNNPVQFYELNLFSDSQQEI
                     NFDYLVLDNNKINSFYSKNQVNFNEENSAVNLNIQGKSNEIDLKSLLGQNLNFDKTKF
                     NITINKFFNSNFNISHFIQKNLDLKIQNLILEKNKQNISLQGNLNINNSYQAKLQVIS
                     SDEPDEIFPWTKDYGGLNQYFLKENNNFFLNLSYDSLANPQLKINGSEFSNMDLN"
BASE COUNT         2019 a         1027 c          944 g         2125 t
ORIGIN      
        1 aaaatatttt tggagaaaaa tttgcaaaaa aaatttgaag attgtgttaa aaccatgctt
       61 gaaattatag gagaaaatcc aaatcgtgaa gggcttatta aaacaccaaa tcgtgttttt
      121 aaagcttatg aatttcttac tagtggttat acgcaaaatg tcaaagaaat tttaaatgac
      181 gctttatttg aaagttctaa taatgaaatg gttttagtgc gtgatataga attttacagt
      241 ctttgcgaac atcatctttt gccttttttt gggcgcgctc atgtagccta tatccctaat
      301 aaaaaagtag taggtttaag caaaattcca cgccttgtag aagtgtttgc aagaagactt
      361 caaattcaag aacaacttac tgaacaaatc gcacaagctt taatggaaaa tgtcgatgca
      421 aaaggtgtgg gtgtagtcat agaagcaaga catatgtgtg ttgaaatgcg tggagtgcaa
      481 aaagctaatt ccaccactac aacttcagct ttacgtggaa ttttcttaaa aaatgaaaaa
      541 accagagagg aatttttttc tctcataaac tctgctaaac aggtaagatt ttaatgaatc
      601 ttgaaaaact acgctccaaa cttggcaaag aaaatttaag tgctattttt ggagagatta
      661 caaaaatttc tgctacaagt atagaaattc gtgggcttaa aacaggggtt ggagatatag
      721 tgaagttagt ttctaatgaa aatgaaaatt taaacactct agctatggtt gtagaaatca
      781 aagaacaatt tagctattta agcccatttt cttttataga aggttttaaa ataggcgatc
      841 gtgcttttat aagtgatgca ggtatgcaaa taggcgttag cgatgaactt ttaggcaggg
      901 tagtagatcc ttttatgcgt ccaaaagatg gtaaaggagc tatagaagca accaaatata
      961 tgcctataat gcgtgcacct attgatgcaa tgaaaagagg gcttatagaa gaagtttttc
     1021 ccgtgggtgt taaaaccata gacgcgcttt taacttgtgg tgtaggacaa aaacttggta
     1081 tttttgcagg aagtggggta ggaaaatcca ctcttatggg aatgatagtt aaaaattcca
     1141 aagctcctat aaaagtagtg gcactcatag gagaaagggg gcgtgaaatt cctgaattta
     1201 tacaaaaaaa tttaggcgga aagctcgatg atacagtgat tattgttgct acaagtgatg
     1261 atagtgcttt gatgcgtaaa tacggtgctt tttgcgcaat gagtgtggca gaatacttta
     1321 aagaacaggg caaagatgta ctttttatca tggatagtgt aacgcgtttt gctatggcgc
     1381 aaagagaaat aggactagct cttggggagc ctcctacaac caaaggttat ccgccaagtg
     1441 ttttaagtct tttgcctcaa ctcatggaaa gaaccggtaa agaagaaggt aaaggcacta
     1501 taacagcctt ttttaccgtt ttagtggatg gtgatgatat gagcgatcca atcgccgatc
     1561 aaagtcgttc tatcttagat ggacacattg ttttaagccg tgaattaaca gactttggaa
     1621 tttatcctcc tattaatata caaaactctg cttcaagggt aatgagcgat attataagtc
     1681 ctgaacataa actttgggca agaaaattta agcgtttaaa ctcgctttta aaagaaaatg
     1741 aagtattgct tcgcatcggt gcttatcaga aaggaagtga taaagaactt gatgaagcta
     1801 tttctaaaaa agaatttatg caaaaattct taggacaaaa tcctgaagaa agcttcgaat
     1861 ttaatcaaac tttagagctt ttaagtcaaa ttgatacacc aaatactcct ttgccaccaa
     1921 ctcaaaatat aaatgtagga agtgcaagtg caactttgcc taatcctaat ttaaaataaa
     1981 attatttaat aaaataatct ccatcaaaac tgattaaaga atatttcctt tcatcgccta
     2041 tgctttgagt tagctcttct atgcttaaaa aacttagcgt atcagcttct acatattcac
     2101 gcacttcttc agcattttta tttgcactga taagttcttc aaaagttgga gtatctatgc
     2161 cataagtatc aggaaatttg atctcaggac aagctatggc aagatggatt ttgctcgctc
     2221 ctgcagcacg aagcaaagaa attatttttt tagaagtagt gccacgcacc aagctatcat
     2281 caatgactac gatttctttg ccttctaaaa ctttacgcat aggattaagt tttaatttta
     2341 cttttaaatt tctaagctct tgagttggct ctataaaagt tcttcctaca taatgatttc
     2401 ttactattgc catttcaaga gggatttgta aatattgcgc aaaacctata gctgcactta
     2461 ctccactatc tggcacaggc acgacaaagt ctgctttata agcaaatttt ttagctaaag
     2521 cttcgcccat ttttttacgc acttcataca cgcttttgcc ttctactata ctatcaggtc
     2581 tagcaaaata aatgtattca aaagcgcaaa ttctaggagt ttgagaaaaa agttctatgc
     2641 tttcaaattt atcatttccc tgagtaaaaa taagcatttc ccctggttta acatcacgaa
     2701 taaattcagc ctctataaga tcaaaagcac aagtttcact agcaactata tagcctccat
     2761 cttttaaacg ccctaaagac aaaggacgca ccccatgagg atctcttaca acataaagtt
     2821 tatctttgct tgctaaaaca aaacaataag ctcctataca ttcttttaaa ctctcaataa
     2881 atctatcttt tagactttct tgcttacttc ttgcgataag atggacaaca ttttctgtat
     2941 ccatattggt ttgaaaaata gccccatctt gaataagtct tgatcttacc tcttctttat
     3001 tgactaaatt tccattatgc gctaaagcaa tatcacctaa aaccgaagta gctgctatgg
     3061 gctgagcgtc atttaaactt gaatttcctg ctgtagaata gcgattatgc cctatagcga
     3121 tttcaccttc taaagttttt agattatcgg gattaaaaat ttgactcact tcacctttag
     3181 ctttaatagt cttaatattt ttaccattac tcacactaat gccacttgct tcttgcccac
     3241 ggtgttgcat agcaaaaagc gcataatacg cataagtgct agcatttttt gaattaataa
     3301 ctcctacaac tgcacacatt ttaaattcct aaaaaatcat tgattgaata catttttgct
     3361 tcttgcttgc taagccaaat agcgatttta atcgcacctt tagcaaaagt cgcccttgaa
     3421 gtagcggtat gattaagttc taaaaactca ccatcttcgt aaaaacctac cgtatggcgt
     3481 cctactatat cgccacccct taaactcatc acggcaatct catctttact tctttcacct
     3541 ataatgccat ctcttccact tactcttact ttttcaagtt ctaaatttct agcttttgct
     3601 acactttgag ctaaagtcat agctgtacca cttggggcat cttttttatg gcgatgatgc
     3661 atttctaaaa tttctatatc aaaatttctt agcatttgac tggctttact agcaagatag
     3721 tttaaaaccg caacacctaa agacatattg gtcgcataaa aaatcggcat cacttcacta
     3781 gcactttgca tcaaatgtaa aattttctca tcaagccctg ttgtacctat taccaaaggt
     3841 ttaggcatag ttcttgcata atttaaaagc tcatgagttc cacttgggga agaaaaatca
     3901 ataatcacat cgcttttttc aaaaagctct cctaaatttc cacccttatc ataaagtatc
     3961 gaaattcgtg cttgtgtttc gctttttaaa cattcttcaa tctgttttcc cattcgtcct
     4021 ttagcgccat aaattcctat tttaatcatc tttttccttg aaaataaaat attgatttta
     4081 gcatttattt tgtaaatttt aaataataaa attaagcttt atggtttttt aatttatata
     4141 aattatctaa caattttgct tcttctccta agcccttgct atgataaaat tttaaatttt
     4201 tactaagata tttttgctct acccagccac caaaatcatg tggataaaga tagttttgtt
     4261 tttcttgatg attgttgtta agataattag gtatttctaa agcttcatta ttttttacat
     4321 agtttaaagc ttcattgata gctttgtagc ttgcattgga tttgattgtg cttgctaaat
     4381 aaactacgca ttgggctagg ataattcttg cttcaggata acctatattt ttaacagcat
     4441 ctagagtcga aactgctaaa tttaaagcat ttggatcggc atttccgaca tcttcacttg
     4501 aaaaaatcac caaacgccta gcgataaaat ccgcactttc tcctgcatca ataagtcttg
     4561 caagataata aatagctgca tcaacgtcac ttccgcgtaa actttttatc attgcacttg
     4621 ctaaaatata atgtgtatct tttgagctaa caccttcact atttatggtg ttgcgaagtt
     4681 ttttaagatt ttcaagactg atatgttttt catctaaaac caagacaaat tcaagcaaat
     4741 ttagcatagc tcttgcatca gcacttttaa gtagaaaatc tttagcttct ttatcaatac
     4801 taaatttcat tttttcctgt acgcgtaaga gtaaagtttc aagttccttt gcccctaaag
     4861 atttaaattc aaaaagcatg gaacgacttc ttataccaga acttaaaaca aaatagggat
     4921 tttcagtgct tgcaccaatt aaaattaaac ggtaattttc cataggaatt aaaagcattt
     4981 cttgttgggt tttgctaagg cggtgaattt catcaataaa aattaaaggc ttataaagac
     5041 tatttttata attatctaaa atttttctta gttcttcgag tttaaaattt cctccatcaa
     5101 attcataaaa atctaagcca aattcttttg ctacaactct agcaaaagtt gtttttccag
     5161 aacctgctgt tccaaaaaaa atactatgag gaagtttttg taaagcagta aattttttga
     5221 aaatttctat aagctcatat tgtcctaaaa tatcatcaaa attttcaggg cgaaaggtca
     5281 aagctaggct cattaattta aatccatatt tgaaaattca ctaccattaa tttttagttg
     5341 aggattggcc aagctatcat aagataaatt tagaaaaaag ttattatttt cttttaaaaa
     5401 atattgattt aaacctccat aatcctttgt ccaaggaaaa atttcatcag gctcgtctga
     5461 actgataact tgtaattttg cttgataaga gttgttaata tttaaattgc cttgtaaact
     5521 gatattttgt ttattttttt caaggattaa attttgtatt tttagatcaa gatttttttg
     5581 aataaaatga gagatattga aatttgaatt aaaaaatttg tttatggtta tattaaattt
     5641 tgttttgtca aaattcaaat tctgacccaa taaagattta agatcaattt cattggattt
     5701 tccttgtatg tttaagttta ctgctgaatt ttcttcatta aaatttactt ggtttttgct
     5761 gtaaaaagaa ttgattttat tgttatctag cacaagataa tcaaagttga tctcttgttg
     5821 gctatcgcta aataaattta actcataaaa ttgtacagga ttgttaaaaa attgttcgta
     5881 atttaaattt tgtaatacaa atttagtata aaattgagaa aaattaatca tatcaaaatg
     5941 tattttcatg tttttaattt ctaaattttt attcattaaa acttcaatat atccgccgtt
     6001 tatgatggta tctccgcctt cattgcttaa atttatatct ttaatattta gaaatatttt
     6061 agagttgtta tcgtgtaatt tgagagtaaa agttcctaat ttattgtttt ttaac
//
LOCUS       DBBXPZ010000092         6018 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.094, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000092 DBBXPZ010000000
VERSION     DBBXPZ010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6018)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6018)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6018
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.094"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..761
                     /locus_tag="ACJFD7_001538"
     CDS             <1..761
                     /locus_tag="ACJFD7_001538"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="CatB-related O-acetyltransferase"
                     /protein_id="HGG0860322.1"
                     /translation="YIENPRRFSRLKTKDFITIPLENNQLESVAGLGIEEYYAFKFSN
                     ILHEMGSFSFSGSFLPHYAKVGRYCSIADGVSMFNFQHPMDRISTASFTYETNHSFIN
                     DACQNHINKTFPIVNHNPSSSITHLIIQDDVWIGKDVLLKQGITLGTGCVIGQRAVVT
                     KDVPPYAIIAGIPAKIIKYRFDEKTIERLLKIQWWKYHFADFYDIDLNLKINQYLDLL
                     EEKIIKKSISYYNPNKLYFRDILELKSKKIFNLF"
     gene            complement(753..1565)
                     /gene="waaV"
                     /locus_tag="ACJFD7_001539"
     CDS             complement(753..1565)
                     /gene="waaV"
                     /locus_tag="ACJFD7_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HGG0860323.1"
                     /translation="MPQLSIIIPLFNSCDFISRALQSCINQTLKDIEILIIDDKSKDN
                     SLNIVLEFAKKDPRIKIFQNEENLGTFASRNLGVLHSSSDFIMFLDSDDFLTLDACKI
                     AFKEMKKGFDLLCFDAFVHRVKTKQFYRFKQDEVLNQKEFLEFLSKQRHFCWSVWAKC
                     FRKDIILKSFEKVKIDERLSYGEDVLFCYVYFMFCEKIAVFKTCIYHYEFNPNGRYEN
                     KNKEILNQNYQDKKKSNEIIKRLSKEFLLDEFHQKLFEVLKREEVGVKNRLK"
     gene            1624..2583
                     /gene="waaF"
                     /locus_tag="ACJFD7_001540"
     CDS             1624..2583
                     /gene="waaF"
                     /locus_tag="ACJFD7_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HGG0860324.1"
                     /translation="MKIFIHLPTWLGDAVMASSALYTIKEHFKNAQFILYGSLVSTAL
                     FEEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFAFRSAFSSKIILHILKTKQRYFF
                     DKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
                     SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCN
                     KTTIKTLCQNIAFCDLFITNDSGPMHISAVYKVKTVAIFGPTKFTQTSPWQNENATLV
                     HLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHR"
     gene            complement(2564..3124)
                     /gene="gmhA"
                     /locus_tag="ACJFD7_001541"
     CDS             complement(2564..3124)
                     /gene="gmhA"
                     /locus_tag="ACJFD7_001541"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008968 - D-sedoheptulose 7-phosphate
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HGG0860325.1"
                     /translation="MINLVEKEWQEHQKIVQASEILKGQIAKVGELLCECLKKGGKIL
                     ICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV
                     EALGNENDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDYNLVVP
                     SDDTARIQEMHILIIHTLCQIIDESF"
     gene            complement(3121..4506)
                     /gene="rfaE1"
                     /locus_tag="ACJFD7_001542"
     CDS             complement(3121..4506)
                     /gene="rfaE1"
                     /locus_tag="ACJFD7_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HGG0860326.1"
                     /translation="MLEFLSQQKPKILIIGDFMVDNYTWCDCSRISPEAPVLVAKTLK
                     EDKRLGGAANVYANLKSLGADVFALGVVGDDESGKFLQEILKGEFLIQKGRKTPFKNR
                     IMAHNQQVLRLDEEDISEILLENELIALFDEKIKDFKAVVLSDYAKGILTPKVCKALI
                     KKAKALNIPVLVDPKGSDFSKYSGATLLTPNKKEALEALKFENLEGENLEKGIKKLKE
                     DFALRYSIITLSEAGIALFDKSLKIAPAKALEVYDVTGAGDSVIAILAFCLANGVEIF
                     KACELANEAAAVVVSKIGSVSVSFDEIKSFNRVDFEKKIKSKEELLALLKQKDEKIVF
                     TNGCFDIVHLGHIKYLEKAKRLGDVLIVGLNSDVSVKRLKGESRPVNSEFQRACMLAA
                     FYFVDFVVIFDEDTPLELISFLKPDILVKGADYKDKLVVGADIVSRVELIDFEEGFST
                     SKIIEKIKDKK"
     gene            complement(4499..5452)
                     /gene="rfaD"
                     /locus_tag="ACJFD7_001543"
     CDS             complement(4499..5452)
                     /gene="rfaD"
                     /locus_tag="ACJFD7_001543"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008712 - ADP-glyceromanno-heptose
                     6-epimerase activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HGG0860327.1"
                     /translation="MRVAITGGAGFIGSQLALNLQEKHEILIIDKMRSSATFENGNLQ
                     SFGHFKNLLEFDGELFAGDINDEKVLKKIEDFKPEIIFHQAAISDTTVFDQTKVLQTN
                     LNTFKDFIELSIDLNAKLIYASSASVYGDAKSPQTVGKDEEPKNPYAFSKLMMDKLAK
                     KYYDKAHLVGLRYFNVYGKGEFYKNKTASMVLQFGHQILAGKNPRLFEGSDQIYRDFT
                     YIKDVINANLIALDSKCGVYNVGSGKARTFQDIVDILQKELKTDLSCEYISNPYVKSY
                     QFHTEAKLDQTWDYQPKFSLEEGIKDYLDEIKRLFEKEVNA"
     gene            complement(5453..6014)
                     /gene="gmhB"
                     /locus_tag="ACJFD7_001544"
                     /pseudo
     CDS             complement(5453..6014)
                     /gene="gmhB"
                     /locus_tag="ACJFD7_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344543.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-alpha-D-manno-heptose-1,7-bisphosphate
                     7-phosphatase"
BASE COUNT         2079 a         1155 c          701 g         2083 t
ORIGIN      
        1 cttacataga aaatcctaga agattttcaa gactaaaaac caaagatttt ataaccattc
       61 cattggaaaa caatcaacta gagagtgtgg ctgggctggg gatagaagaa tattatgctt
      121 ttaaatttag caatatctta catgaaatgg gttcattttc ttttagcgga tcttttctac
      181 ctcattatgc aaaagttgga aggtattgtt caattgctga tggggtttct atgtttaact
      241 ttcaacaccc tatggataga atcagcactg caagttttac ctatgaaaca aatcatagtt
      301 ttattaacga tgcttgccaa aatcacatca acaaaacatt tcctatagtt aaccataatc
      361 caagctcatc aataacgcat ttaattatac aagatgatgt ttggatagga aaagatgttt
      421 tgcttaaaca gggtatcaca cttgggactg gatgtgtcat aggacaaaga gctgtagtta
      481 ctaaagatgt accaccttat gctataattg caggaattcc agccaaaatt atcaaatata
      541 gatttgatga aaaaacaata gaaagattat taaaaattca atggtggaaa tatcattttg
      601 ctgattttta tgatattgat cttaatttaa aaataaacca atatcttgac ctactagaag
      661 aaaaaatcat aaaaaaatca atttcctact ataatccaaa taaactttat tttagagata
      721 ttttagaact aaaatcaaaa aaaattttta atctatttta atctattttt cacccctact
      781 tcctctctct ttaaaacttc aaataatttc tgatgaaatt catcaagtaa aaactctttg
      841 gatagtcttt ttatgatttc attgcttttc tttttatctt gataattttg atttaaaatt
      901 tctttatttt tgttttcata tcttccattt ggattaaatt cataatgata aatacaagtt
      961 ttaaaaacgg ctattttctc acaaaacata aaataaacat aacaaaaaag cacatcttca
     1021 ccgtaactca aacgctcatc gattttaacc ttttcaaaac tttttaagat gatatctttt
     1081 ctaaaacact tcgcccaaac cgaccagcaa aaatgccttt gtttgcttaa gaattctaaa
     1141 aattcctttt gattcaaaac ttcatcttgt ttaaaacgat aaaattgttt ggtttttacc
     1201 ctatgcacaa aggcatcaaa acaaagcaaa tcaaaacctt ttttcatctc tttaaacgct
     1261 attttacaag catcaagggt taaaaaatca tcgctatcta aaaacattat aaaatcagaa
     1321 ctagaatgta aaacccccaa atttctactt gcaaaagtgc ctaaattttc ctcattttga
     1381 aagattttta ttcttggatc ttttttagca aattctaaaa ctatatttaa actattatct
     1441 ttacttttat catcgataat caaaatttca atatctttta aagtctgatt tatacaactt
     1501 tgcaaagccc ttgaaataaa atcacaagaa ttaaaaagcg ggattatgat agaaagttgt
     1561 ggcatatttt tcctaaattt tgttaaaata ataaaaacaa ttctatcaaa gtttaggaaa
     1621 tttatgaaaa tttttataca ccttcccact tggctaggcg atgcggtgat ggcttcatct
     1681 gctttataca ctataaaaga acattttaaa aatgctcaat ttatccttta tggatctttg
     1741 gtttccacag cactttttga agaatttcct aattctaaaa tcatcataga aaataaacta
     1801 tcccgctata aacaagccct atctttacgc aaagaacttg gtaagatcga tcttagcttt
     1861 gcttttagat ctgcgttttc ttctaagatt atcttgcata tccttaaaac aaaacaaaga
     1921 tatttttttg acaaaaacaa gcacaaagaa gaacatcaag ttttaaaata cctttatttt
     1981 atagaaaact cacttagtat aaaagctcat tctaaagact taaagcttcc ctttaagcta
     2041 aaacttcaag accctcttgt cttaaaaaat ggtaaaaaaa ttctaggact caatcctggc
     2101 gcaagctttg gaagtgcaaa aagatgggat gcgagttatt ttgctaaagt ggctttaaat
     2161 ttcagccaaa gtcatgaaat tttaatcttt ggcgcaggaa aatccgaaca agaactttgt
     2221 aatgaaattt atcaaatttt aaaagaacaa aacataaaag taaaaaatct ttgcaacaaa
     2281 accaccatca aaaccctttg tcaaaatatc gctttttgcg atcttttcat cacaaatgac
     2341 agtggtccta tgcacataag tgcggtttat aaggtaaaaa ccgtagctat ttttggccct
     2401 acgaaattta ctcaaacttc accttggcaa aatgaaaacg caacattagt gcatttagat
     2461 ctagcttgta tgccttgtat gcaaaaaacc tgccctttaa aacaccacaa atgcatgaaa
     2521 gatctaaagc ctcaaagggt tatagaagag gctagaaatt tacttaaaaa ctctcatcga
     2581 tgatctgaca aagtgtgtgt atgattaaaa tgtgcatttc ttgaattcta gccgtatcat
     2641 cacttggcac aacaagatta taatcacaaa gcttattcat cattccacca ccctttccac
     2701 taagccctaa acaaagcata ttaagctctt ttgctttttt taaagcttct aaaacattag
     2761 ggctttttcc gctcgttgaa ataccgatta aaacatcatt ttcatttcct aaagcttcta
     2821 cttgtcttga aaaaacaaac tcaaaaccat agtcatttcc tatagcacta agcgctgaag
     2881 tatctgttgt aagcgctatg cctgctaaag ctttgcgttc ttttttataa cgcccactaa
     2941 gttcagctgc aaaatgctgg gcatcagctg cacttccacc atttccgcaa atcaaaatct
     3001 tgccaccttt tttaagacac tcacacaaaa gctcacctac tttagcgatt tgtcctttta
     3061 aaatttcact ggcttgaacg attttttgat gttcttgcca ttctttttcc actaaattta
     3121 tcatttttta tcctttattt tttctatgat cttgcttgtg ctaaatcctt cttcaaagtc
     3181 gattaattca actcttgaga caatatctgc acccacaaca agtttatcct tataatcagc
     3241 tcctttaacc aaaatatcag gttttaaaaa gcttataagt tccaaaggcg tatcttcatc
     3301 aaaaatcact acaaaatcca caaaataaaa agctgccaac atacaagctc tttgaaactc
     3361 tgaatttaca ggacgactct cacctttgag tcttttcaca ctcacatctg agttcaaacc
     3421 tacaatcaaa acatcgccca atcttttagc tttctcaagg tattttatat gtcccaaatg
     3481 cactatatca aaacaaccat ttgtaaaaac aatcttttca tccttttgtt ttaaaagtgc
     3541 caaaagttct tctttgcttt tgattttttt ctcaaaatcc acacgattaa aactcttaat
     3601 ctcatcaaaa ctcacactca cgctacctat tttactcact acaacagctg cggcttcatt
     3661 ggcaagttcg caagctttaa aaatttcaac cccatttgcc agacaaaaag ccaaaatggc
     3721 aatcacacta tcgcccgccc ctgttacatc ataaacttct aaggctttag caggagcgat
     3781 ttttaaactc ttatcaaaaa gtgcgatccc tgcttctgaa agagtgatga tagaataacg
     3841 caaagcaaaa tcttctttta attttttaat ccctttttct aaattttcac cctctaaatt
     3901 ttcaaatttc aaagcttcta aagcttcttt tttattaggc gtgagtaagg ttgcaccgct
     3961 atatttacta aaatcactgc ctttaggatc aactaaaaca gggatattta aagccttagc
     4021 cttttttatc aaagccttgc aaaccttagg cgttaaaata cccttagcat aatcacttaa
     4081 aaccacagcc ttaaaatctt taatcttttc atcaaacaaa gcaataagct cattttcaag
     4141 caaaatctca cttatatctt cttcatctag tcttaaaacc tgctgattgt gtgccataat
     4201 gcggttttta aaaggggttt tgcgtccttt ttggatcaaa aattctcctt ttaaaatttc
     4261 ttgtaaaaat ttcccactct catcatcacc cacaacacca agtgcaaaaa catcagcacc
     4321 taaacttttt aaatttgcat aaacattcgc agccccgcct aatcttttat cttctttaag
     4381 agttttagct accaaaacag gggcttcagg actgatacgc gaacaatcac accaagtgta
     4441 attatccacc ataaaatccc ctataattaa aattttaggt ttttgctggc ttaaaaactc
     4501 aagcatttac ttccttttca aaaagtcttt ttatctcatc taaataatct tttataccct
     4561 cttcaagact aaattttggc tgataatccc aagtttgatc tagctttgct tcagtatgaa
     4621 attgataaga ttttacataa ggatttgaga tatattcaca agacaaatca gtctttaact
     4681 ctttttgcaa aatatcaact atatcttgaa aagtccttgc tttaccactg cctacattat
     4741 aaaccccaca ttttgaatca agggcaatta aattggcatt aataacatct ttaatataag
     4801 taaaatctct ataaatttga tcacttcctt caaacaatcg tggatttttt cctgctaaaa
     4861 tttgatggcc aaattgcaaa accatagaag cggttttgtt tttataaaat tcgccttttc
     4921 cataaacatt aaaatatcta agtcctacca aatgagcttt atcgtaatat tttttcgcta
     4981 acttatccat catcaatttt gaaaaagcat aaggattttt tggttcttca tctttaccta
     5041 cagtttgtgg actttttgca tcaccataaa ccgaagctga acttgcataa ataagctttg
     5101 cattaagatc tatgctaagt tctataaaat ctttaaaagt atttaaattg gtttgtaaaa
     5161 ccttagtttg atcaaaaact gtagtgtctg aaattgctgc ttgatgaaaa ataatctctg
     5221 gcttaaaatc ttcaatcttt tttaaaactt tttcatcgtt aatatcacct gcaaaaagtt
     5281 ctccatcaaa ttcaagtaaa tttttaaaat gtccaaaact ttgtaaattt ccattttcaa
     5341 aagtcgcact gctacgcatt ttatcaatga ttaaaatttc atgtttttct tgcaaattta
     5401 aagccagttg cgaacctata aatcctgcac cacctgtgat tgctactctc atttaaatgt
     5461 ccttttcttt aaaaaaactc aaaatttctt ttaaattttt aaattgtcta aaaaaatcgc
     5521 cttctttttt ttcttcattt accaaaatca aagtgccaat attagcattt aaccctgctt
     5581 gcatatcgct tagattatcc ccgataaaaa tagaattttt catatctaaa ttaaactcat
     5641 cttttgcttt taaaagcatt cctgctttag gtttgcgaca ttcacaacct tctaaatgcg
     5701 gacaatgata aattttatca atttttatac cttgtttagt aaattcttta agcatataat
     5761 cacaaagctt aaaaaaatca ctttccttat aatatcctct tgcaatgcct gattgatttg
     5821 tcgctataaa aagcaaatat tttttagcta aaaaatatct acaaagttca aaaattccat
     5881 cacaaaattc aaaatcttct attttataga catatttttt atctatatta atcacaccgt
     5941 ctctatctaa aaataatgct tttgttttca taaaaaacat tataatatag cttttttgaa
     6001 aagaaaataa acattatc
//
LOCUS       DBBXPZ010000093         5981 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.095, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000093 DBBXPZ010000000
VERSION     DBBXPZ010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5981)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5981)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5981
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.095"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..163
                     /locus_tag="ACJFD7_001545"
     CDS             <1..163
                     /locus_tag="ACJFD7_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860328.1"
                     /translation="ITILNPFIGKLINDKIFSNDPLFIYLTFAYTILIFLVLFSLQKT
                     ARKNSIVPS"
     gene            222..1418
                     /locus_tag="ACJFD7_001546"
     CDS             222..1418
                     /locus_tag="ACJFD7_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860329.1"
                     /translation="MENLIKEQKKLFYKVIKNIKDENSLKQLEQFLNLIENNAIQNSL
                     KDIAEFNSVYNGNGNDEEMSVKDMIKDIKIGQKDIDEIYWKIFDIETDGENKSSALIE
                     IEKAKECANKMKNDYMKFYDQEDSQGNVTEGIISKLKQACDDIEENKDKIEKFEKFYN
                     EIFIGVEADENGKGGKLSLEKYLNEKRTEINNLISSKKQELENCLNSYKDKFENLYKE
                     KNDEIDELLPGATSAGLAEAYKDEREVAQTNIKTWNIIFGVSIFVFIIVFGIYFCFSF
                     EENFTYINFLRALPFLFFSGFFTYYSTKQIAEYKRIASEYAYKQRLNQTYKGYETQIK
                     ETENEELKNQLLKIMLDSAENNPSKILDKKGEIPSLSLIEKMLDILPFNTLKRLQDKI
                     KAKIEK"
     gene            complement(1502..2203)
                     /locus_tag="ACJFD7_001547"
     CDS             complement(1502..2203)
                     /locus_tag="ACJFD7_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HGG0860330.1"
                     /translation="MKTNNIFMALAIVLASLILAFGFNKALSDFKTLERSVSVKGLSQ
                     KEVEADTLILPIKFTRSNNNLTNLYEELEQDKENIIKFLKEQGVKEDEINYNSPNIID
                     RLSDPYGNDTQAAYRYIGTANLLIYTQNVKLGKSILENISSLAKFGIVTKIDNYDIEY
                     LYTKLNEIKPQMIEEATLNARNAAIKFAQDSNSHLGKIKKASQGQFSISNRDKNTPYI
                     KTIRVVSTIEYYLKD"
     gene            complement(2200..3402)
                     /locus_tag="ACJFD7_001548"
     CDS             complement(2200..3402)
                     /locus_tag="ACJFD7_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HGG0860331.1"
                     /translation="MQKHTKIHGFAKFKLIVILALMSSIAPLSTDMYLPALSHVEQSF
                     QTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGRKIPALVGIFFFIVSSLFCVIIDDI
                     YAFIALRFFEALGGCAGVVIARAIINDLFEIKEAAGIFALMMVFSSLAPMLSPTFGGI
                     LLEYFSWHSIFATLFALGILLFLMILFGLKESAPHLKNKKFSHHEAMKSYKFVLSDKR
                     FLVYILCASFALAAMFAYITGSSFVFTQFFSLSEQKFALLFGVNALGFVICANINARL
                     VLKYESEKILAKALMIMFISTVILLANAFFHPNFLLFELSIFTSIAMLGFIAPNTTTL
                     AMARFKEHSGTASAVLGTVQFGFAGFISFVVGAINANTPIILAFVMCACVLVANMIYF
                     LIKIKEKK"
     gene            3505..4854
                     /locus_tag="ACJFD7_001549"
     CDS             3505..4854
                     /locus_tag="ACJFD7_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HGG0860332.1"
                     /translation="MQNLNQNEQIKCPSCGSFIDISTALYAQILDKAKQEMLKQKKEF
                     DDEVNAKRAEYTKALNDLKTQKIEQEKLINEQVSQKLLLEKQKFEQELLIQKQNFQKE
                     FSEKFNKEHENEMKIMQEELEKKSKELSEFLSIKAENERLKREQKENEERLKFQAKEE
                     AFKEFKEQESKNLEFEREKMRLEFQKSTQEQDLKYKELETNFKSVAQKLEDAQRRIEQ
                     GSQQLQGEAAELLIEEYIQSEYLSDEVKEVPKGVNGADCLHIVKDNFGNICGSILYES
                     KRTKEFNKEWLDKLKLDSIAAKSDIAVLITKTMPKDKEKTHFKEGILICTFNEFKGVL
                     AVLRESIINAYKLKNALQNKDEKNHILYEYLNSKEFNTQITFILKTYQNMKEELEAEK
                     RALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQGGNLIGEEGIKSLENLAKDED"
     gene            complement(4878..5921)
                     /locus_tag="ACJFD7_001550"
     CDS             complement(4878..5921)
                     /locus_tag="ACJFD7_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HGG0860333.1"
                     /translation="MKKHILLLGLCLSLSLSAKSVSDYKVGEELSDKEGVEYFKELSK
                     RPVQEWPNKNLSINDVPKGKQGDLIRYGIELLSKTESTLGPYSKLKKTSNEVNCISCH
                     MDNDGNGLPGTKKYVIPFLNILNNYPRLDIETMKIISVEDRIRGMGGTDSHRFPNDSK
                     EMKAILAYFKWLKEAYGIKDGVKLEGDFFAKMNFPNRPADPVRGKKLFEENCVACHGE
                     RGLGVKNDNYEQGSGHLYPSLLIYPDGGHMAMIPFLARFLKSAMPFGASADNPILSDE
                     DALDIAAYVNTGFVRMPITTTENRAGLDTAYSKSPSLKPEYFASPQQNLDPKEYIKVK
                     YGPWKNPNHFPGE"
BASE COUNT         2261 a          901 c          970 g         1849 t
ORIGIN      
        1 tataactatt ttaaatcctt ttattggaaa acttatcaat gataaaatat tttcaaatga
       61 tcctttgttt atatatctaa catttgctta tactatttta atatttttag ttcttttttc
      121 actccaaaaa accgcacgca aaaattccat agtgccaagt tgaaaaattt aaggtattgt
      181 gatgaaaatt tgcaacaaaa tataaaaaat aaggaataaa aatggaaaat ttaattaaag
      241 aacaaaaaaa gttattttat aaagttataa aaaatatcaa agatgaaaat tctttaaaac
      301 aattagaaca atttcttaat ctaatcgaaa ataatgctat acaaaattca ttaaaagata
      361 ttgcagaatt taattctgtt tataatggaa atggcaatga tgaagaaatg tccgtaaaag
      421 atatgattaa agatataaaa atcggacaaa aagatataga tgaaatttat tggaaaattt
      481 ttgatattga aaccgatggt gaaaataaaa gcagtgcttt aattgaaatt gaaaaagcta
      541 aagaatgtgc aaataaaatg aaaaatgatt atatgaaatt ttatgatcag gaagattctc
      601 aaggcaatgt taccgaaggg attatttcga agttgaaaca agcttgtgat gatatcgaag
      661 aaaataaaga taaaatagaa aaatttgaaa aattttacaa tgaaattttt attggtgttg
      721 aagcagatga aaatggaaaa ggtggaaagt tatctcttga aaaatattta aatgaaaaac
      781 ggactgaaat aaacaattta atttctagta aaaaacaaga attagaaaat tgtttaaata
      841 gctataaaga taaatttgaa aatttgtata aagaaaaaaa tgatgaaata gatgaattat
      901 taccaggtgc aacttctgcg ggattagccg aggcttataa agatgaaaga gaggttgcac
      961 aaacaaatat caaaacttgg aatataattt ttggagtgtc tatattcgtt tttattattg
     1021 tttttggtat ttatttttgc ttttcatttg aggaaaattt tacatatata aattttctta
     1081 gagctttgcc atttttattt tttagcggat tttttactta ttattctaca aagcaaattg
     1141 cagaatataa aagaatagca agtgagtatg cttataaaca aagattaaat caaacttata
     1201 aagggtatga aactcaaata aaagaaacag agaacgagga actaaaaaat caacttttaa
     1261 aaattatgct agattctgca gaaaataatc caagcaagat acttgataaa aaaggtgaaa
     1321 ttcctagttt aagcttgatt gaaaaaatgc ttgatattct tccatttaat acattgaaaa
     1381 gacttcaaga taaaattaaa gcaaaaatag aaaaataatt ataaaaaact atttaaaaac
     1441 cgcacgaaaa aattccatag tgccaagcta agcctttaaa gcttagcttg aaattttatc
     1501 atcagtcctt taagtagtat tctatagtag aaaccactct tatggttttg atataagggg
     1561 tgtttttatc tctgttgctg atgctaaatt gtccttgaga agcctttttt atcttgccta
     1621 gatggctgtt tgagtcttgt gcgaatttta tcgctgcatt tctagcattg agcgttgctt
     1681 cttctatcat ttgtggtttt atctcattga gtttagtata aaggtattct atgtcataat
     1741 tatcgatttt cgttactatg ccaaattttg caagacttga aatgttttct agtatgcttt
     1801 ttccaagctt tacattttga gtatagatga gcaaattcgc agtgcctatg tatcggtatg
     1861 cagcttgagt gtcgttgcca taaggatcgc ttagacggtc tatgatattt ggcgagttgt
     1921 agttgatctc atcttctttt acgccttgtt cttttaaaaa tttgatgata ttttctttat
     1981 cttgttctag ttcttcgtat aaatttgtaa gattgttgtt tgatcttgtg aattttatag
     2041 gaagtatcaa agtatccgct tcgacttctt tttgacttaa accctttaca cttacacttc
     2101 tttcaagtgt tttaaaatcg cttaaagcct tgttaaatcc aaaagctaga atcaaacttg
     2161 ctaaaactat ggctaaagcc ataaagatat tatttgtttt cattttttct cctttatttt
     2221 gattagaaaa tatatcatat ttgcaaccaa tacgcaagca cacattacaa aagcaaggat
     2281 tatcggcgta tttgcgttaa tagccccaac cacgaaggag ataaaacctg caaaaccaaa
     2341 ttgcaccgtt ccaagcaccg cagaagcagt tccgctatgt tctttaaacc ttgccatagc
     2401 caaagtcgtg gtattgggtg cgatgaaacc aagcatagcg atacttgtaa aaatactaag
     2461 ctcaaaaagc aagaaatttg ggtgaaaaaa ggcatttgca agtaaaatca cagtcgatat
     2521 aaacattatc atcaaagctt ttgccaaaat tttttcgctt tcgtatttta aaaccaatct
     2581 cgcattgata tttgcacaga tgacaaaacc taaagcattt accccaaaaa gcaaggcaaa
     2641 tttttgctca cttaagctaa aaaactgcgt aaaaacaaag cttgatcctg tgatataagc
     2701 aaacatcgcc gccaaagcaa aagaagcaca tagtatataa actaaaaagc gtttatcgct
     2761 taaaacaaat ttgtagcttt tcatcgcttc atgatgggaa aattttttgt ttttaagatg
     2821 aggtgcggac tcttttaaac caaaaagtat catcaaaaaa agtaaaattc ccaaagcaaa
     2881 caaagtcgca aaaatactat gccatgaaaa atactctagc aaaattcccc caaaagttgg
     2941 cgaaagcata ggagcaagag aactaaaaac catcatcaaa gcaaaaatcc ctgcagcttc
     3001 tttgatctca aacaagtcat tgataatagc ccttgcgata accacacctg cacaaccccc
     3061 aagtgcttca aaaaatctca aagcaataaa agcataaata tcatcgataa tcacacaaaa
     3121 caaactcgaa acgatgaaga aaaatatccc caccaaagct ggaattttac gcccaaaaat
     3181 atcacttaaa ggcccatata taagctgtcc taaagcaaaa gcgataaaaa aacttgcgat
     3241 actaagttgg gttaaaaaag aattagtttg aaaactttgt tccacatgag aaagtgcagg
     3301 caaatacata tctgtagaaa gcggtgctat gcttgacatc aaagcaagga taacgatgag
     3361 tttaaattta gcaaagccgt gaattttggt gtgtttttgc atttgcaatc ctaattattc
     3421 taaaagaatg attttaacaa gtcaatctta gaataatctt tgtttttcta tgttaaattt
     3481 agggaaaaat tctaaggaaa ttttatgcaa aatttaaacc aaaatgaaca aatcaaatgc
     3541 ccaagttgtg gaagttttat cgatatcagc actgctttat atgctcaaat tttagataaa
     3601 gctaagcaag aaatgctaaa acaaaaaaaa gaatttgatg atgaggtaaa tgctaaaaga
     3661 gctgaatata ccaaagcttt aaatgattta aaaactcaaa agatagaaca agaaaaactc
     3721 ataaacgagc aagtaagcca aaagcttctt ttagaaaagc aaaaatttga acaagaactt
     3781 cttatacaaa agcaaaattt ccaaaaagaa ttcagcgaga aatttaacaa agagcatgaa
     3841 aatgaaatga aaatcatgca agaagagctc gagaaaaaaa gcaaagaact tagcgagttt
     3901 ttaagcataa aggctgaaaa tgaaaggcta aaaagagagc aaaaagaaaa tgaagaaaga
     3961 ttgaaatttc aagccaaaga agaggctttt aaagaattta aagaacaaga aagcaaaaat
     4021 ttggaatttg aaagagaaaa aatgcgtctt gaatttcaaa aaagtactca agagcaagat
     4081 cttaaataca aagaactaga aacgaatttt aaaagtgtag ctcaaaagct agaagacgca
     4141 caacgcagga tagaacaagg ctcacagcaa ctccaaggcg aagcagccga actactcata
     4201 gaagaataca tacaaagtga gtatttaagc gatgaagtaa aagaagtgcc aaaaggcgta
     4261 aatggagctg attgtctgca tatagtaaag gataattttg gaaatatttg cggaagtatt
     4321 ttgtatgaga gcaaacgcac taaagaattt aataaagaat ggcttgataa gcttaagcta
     4381 gacagcatag ccgcaaaaag tgatatagcg gttttgatca caaaaactat gccaaaagat
     4441 aaagaaaaaa cgcattttaa agaaggaatt ttgatctgta cttttaatga attcaaaggt
     4501 gttttagcag tgcttagaga aagcattata aacgcttata aactcaaaaa tgccttgcaa
     4561 aacaaagatg aaaaaaatca cattttatac gaatacttaa attctaagga atttaacacg
     4621 caaatcactt ttatactcaa aacttaccaa aatatgaaag aagaattaga agctgaaaaa
     4681 agagctttgc aaaatatatg gaaaaaaaga gaaagagcta tagaaaatct aagttttaat
     4741 tccactgcca tagtgagttc tttaaatgcg atatttagcg acttacaagg tggaaatttg
     4801 ataggcgaag aagggattaa aagtcttgaa aatttagcca aagatgagga ttaattttgg
     4861 gctaagccca aaattaatca ttctcctggg aagtgatttg gatttttcca aggtccgtat
     4921 tttactttta tgtattcttt agggtctaaa ttttgttgcg gtgaggcaaa atactcaggt
     4981 tttaatgatg gggatttgct ataagctgta tcaagtcctg cacgattttc tgtagtggtt
     5041 ataggcattc ttacaaaacc tgtattgaca taagctgcta tatctagcgc atcttcatcg
     5101 cttaatatag gattatccgc actcgcacca aaaggcatgg ctgattttaa aaatcttgct
     5161 aaaaatggta tcatagccat gtgtccacca tcaggataga taagtaaaga tggatataaa
     5221 tgtccgctac cttgttcgta attatcattt tttaccccaa gtcctctttc gccatgacaa
     5281 gcaacgcaat tttcttcaaa gagttttttt ccacgcacag ggtcagctgg gcgatttgga
     5341 aaattcatct tagcaaaaaa atctccttca agctttacgc cgtctttgat accataagct
     5401 tcttttagcc atttaaaata agctaaaatt gctttcattt ctttagaatc attaggaaat
     5461 ctatgagagt cagttccgcc cattccgcga attctatctt caacagagat gattttcatc
     5521 gtttctatgt caagtcttgg ataattgttt aggatattta aaaatggaat aacatatttt
     5581 tttgtccctg gcaaaccatt gccgtcattg tccatgtgac aggaaataca atttacttcg
     5641 ttgcttgtct tttttagctt gctatagggt cctagagtac tttctgtctt gcttaaaagc
     5701 tctatgccat aacggattaa atccccttgc ttgccttttg gaacatcatt gatgcttaaa
     5761 tttttatttg gccattcttg cacaggtctt ttggaaagtt ccttaaaata ctctactcct
     5821 tccttgtcgc ttaattcttc tcctactttg taatcactca cgcttttagc actaagactc
     5881 aaactaagac ataagccaag caataaaatg tgttttttca tgattttcct cctttttatt
     5941 tgcagttcaa attgatttta gtgtattttt tcttaaatat t
//
LOCUS       DBBXPZ010000094         5870 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.096, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000094 DBBXPZ010000000
VERSION     DBBXPZ010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5870)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5870)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5870
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.096"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            50..1972
                     /locus_tag="ACJFD7_001551"
     CDS             50..1972
                     /locus_tag="ACJFD7_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HGG0860334.1"
                     /translation="MIVLSSDDKKRFKKYLVDFFHNAYNGNKLSSKDEVVNFNFFKKY
                     DFYVDLSYGKGNVAKIPWIIFIRMDTQEYKASYGVYVYCGIKRENREIVVCIGESEDK
                     TVNYLARNKVDEYNAQFNHQVYNYSNLSNDINLIMDKIILNMQWFKELPLNEIQDINI
                     NTLESKSLEVENNVQQISSKMENKNMPLNQILYGPPGTGKTYHTIDKALEILGENLEN
                     RDEKKAKFDEYVKNGQIVFTTFHQSYGYEEFVEGIKPRIDSKENSKEVEYEIKDGIFK
                     ELCKKALDNYKVSLLTQEEFVKSEDLENKIEIFLDELVDQQKFIEKIQSGGFKLEEYN
                     EKYRIITDDTNANLYLNLEIFKTLLENKDKIINGRSIKQILNNKHRRQIDSYYFQLVK
                     LFKEREQDYKVDNNPSEKPELKPYIIIIDEINRGNVSKIFGELITLIEASKRIGEKEE
                     LKVTLPYSGKEFGVPKNVYIIGTMNTADRSITSLDTALRRRFEFIEMMPDVSKLSMDC
                     EGINLQELLKAINTRIEYLLDREKTIGHAFFVSVENLEDLKKVFQNKIIPLLQEYFYN
                     DYALINAVLNHNGMIKEDKKDDKYLQKIKNLDSVNSERSIYNIASFDDKIWDKIEIYQ
                     AIYNDEIANKLKNENE"
     gene            1965..3296
                     /locus_tag="ACJFD7_001552"
     CDS             1965..3296
                     /locus_tag="ACJFD7_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="McrC family protein"
                     /protein_id="HGG0860335.1"
                     /translation="MNSTFSIIEYQAFSKEDLKEIFKEKAEGFYKELEDFAKNNENLL
                     GFKNKNSLKAKNYVGIIQTKSGVLEILPKCTNLDSYKKEDSSSNHDKEKLRRCYELDN
                     ISKNNDFYEKDFKFNPKNLLINMLKTLKNSPFKKSQISSLQSSKIPLFEVFITMFLDE
                     FDSVYKKGLMRSYLSCEENRAFLKGKLLFNEHIKRNLIHKERFFTSNDEFVLDIAPNR
                     LIKSTLNFLKSKTSLNKFRLIKSMQILDEVEFSKNYEKDFSYKISRHFDYYENLLLWC
                     KIFLKNESFMPYHGKNEAFALLFPMEKIFEDYVAYMLKKVNPAQDIKVQNNGKYLISK
                     NDENCFMLKPDLYIENKMILDTKWKIPNDSENEKKQGIEQSDLYQMFAYACKFKIYDI
                     KLVYPLCEKTQDLQRKIAEKFFVFKASEHLYFKEQGQKDIKVQVFFAPLPF"
     gene            complement(3285..4088)
                     /locus_tag="ACJFD7_001553"
     CDS             complement(3285..4088)
                     /locus_tag="ACJFD7_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HGG0860336.1"
                     /translation="MLEILNFTFFQNALLGAILVSIACGIIGTLVMINRLFSMAGGIT
                     HGAFGGIGIAFYFSLPILLSTGIFTLFLAFLVAFLAKRYEHRSDSIIAVIWAFGMAVG
                     IILIDLSPSYNTDLMAYLFGSILAVGTQDLWLMALVDSVVVLLIFLFYRQFEALSFDA
                     EFAKVRGINTSFFHYLLIALMAFCIVISIRLVGLILVMALLSIPSFIAENFTKRLGFI
                     MILASFLSMIFCILGLILSYYLNLSSGACIIAIACFGFLVHLIGKFLKR"
     gene            complement(4081..4935)
                     /locus_tag="ACJFD7_001554"
     CDS             complement(4081..4935)
                     /locus_tag="ACJFD7_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HGG0860337.1"
                     /translation="MLFFEISNLNYAYDNEIILKNINLSYDNKDFLSIIGPNGAGKST
                     LVKLILGLLKSKNEIHFKALQRKEIGYVPQHTLANPNFCPRVLEIVLMGLVSKKIFGF
                     YGKKDKEKAMQALKSVGMEKFWNKTIDSLSGGQRQRVFIARALASECKMLILDEPTAS
                     VDNKSAIQIFELLSSLHQKGMGILLICHDINLVLAYSDKIAHLNKELFLHTNTKEKEK
                     SSFLKHLYENHSHFCDVEMSLNTCFCDEENCDSKKLCEQEFTRRNLKKTEFKKENFCL
                     KFSKENNA"
     gene            complement(4948..5838)
                     /locus_tag="ACJFD7_001555"
     CDS             complement(4948..5838)
                     /locus_tag="ACJFD7_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HGG0860338.1"
                     /translation="MKKILLFILSLGIFYTFTQAKNLEQEQNTSSNLVSVSIAPQAFF
                     IKKIAANTLDVNVILPPNSNEHNFEFKPSTMKKLEKSDIYFTIGLEFEKVFTDKFKQN
                     FSKLQVVNMQKNIALIQTHDTHEHSHEHEHHEHEHFDPHTWLDPILVQTMALNIYDTL
                     IQKYPQNENLYKENLDKFLAELDSLNLQIASKLEKLKNREFVVYHPSWTYFAKRYNLT
                     QIPVEILGKEPKSKDLQKLITLMKDKNLKVIFVQNGFPENAAKTLAKECDAKIYKIDH
                     LSYDWENELLKTADAFSHNL"
BASE COUNT         2302 a          713 c          883 g         1972 t
ORIGIN      
        1 tgtaatattt ggataataat tttaaattat caaaaataaa ggatatatta tgattgtatt
       61 gtcatctgat gataaaaaga ggtttaaaaa gtatttagta gatttttttc acaatgctta
      121 caatgggaac aaattgtcat ctaaagatga ggtagttaat tttaattttt ttaaaaaata
      181 tgatttttac gttgatttga gttatggaaa aggaaatgta gctaaaatcc catggattat
      241 atttataaga atggatactc aagaatataa agcttcttat ggtgtttatg tgtattgtgg
      301 tataaaaaga gaaaatagag aaattgttgt ttgtattgga gaaagtgaag ataagacagt
      361 caattattta gcaagaaata aagtcgatga gtataatgca caatttaatc atcaagttta
      421 taattattca aatttaagca atgatattaa tttaattatg gataaaatta ttttaaatat
      481 gcaatggttt aaagaattac ctctaaatga gattcaagat ataaatatta atacgcttga
      541 aagtaaaagc ttagaagtgg aaaataatgt gcaacaaata tcaagtaaaa tggaaaataa
      601 aaatatgcct ttaaatcaaa ttctttatgg gcctccaggg acaggaaaaa cttatcatac
      661 tatagataaa gctttagaaa ttttaggtga aaatttagaa aacagagatg agaaaaaagc
      721 aaaatttgat gagtatgtaa aaaatggaca aatagttttt accacttttc atcaaagcta
      781 tggatatgaa gaatttgtag aaggcataaa gcctcgcata gatagcaaag aaaattctaa
      841 ggaagtagaa tacgaaataa aagacggaat ttttaaagaa ctttgtaaaa aagctttgga
      901 taattacaaa gtatctttat taacacaaga agaatttgta aagagtgaag atttagaaaa
      961 caaaatagaa atttttttag atgaattagt agatcaacaa aaatttatag aaaaaattca
     1021 aagtggtgga tttaaattag aagaatataa tgaaaaatat agaattatca cagatgatac
     1081 taatgcaaat ttgtatttaa atttagaaat ttttaaaacg cttttggaaa ataaagataa
     1141 gattataaac ggaagaagca ttaagcaaat tttaaataat aaacatagaa gacaaatcga
     1201 tagttactat tttcagctag ttaaattgtt taaagaacga gaacaagatt ataaagtaga
     1261 taataatcct agtgaaaagc cagaattaaa accttatata atcatcatcg atgaaatcaa
     1321 tcgtggtaat gtaagtaaga tttttggtga gcttataacc ttgatagaag ctagcaaaag
     1381 gataggtgaa aaagaagagt taaaagtgac tttgccttat agtggcaaag aatttggagt
     1441 acctaaaaat gtttatatca taggtactat gaatacagcc gatagaagca taacttctct
     1501 tgatacagct ttaagaagaa gatttgaatt tattgagatg atgcctgatg tgagcaaatt
     1561 atctatggat tgtgaaggta ttaatttaca agaattatta aaagctataa acactcgtat
     1621 agaatattta ctagatagag aaaaaaccat aggtcatgca ttttttgtaa gtgttgaaaa
     1681 tttagaagat ttaaaaaaag tttttcaaaa taaaattatt ccgcttttgc aagagtattt
     1741 ttataatgat tatgctttga ttaatgcggt tttaaatcat aatggtatga ttaaagaaga
     1801 taaaaaagat gataaatatc ttcaaaaaat aaaaaatcta gatagtgtta atagcgagag
     1861 aagtatttat aatattgctt catttgatga taaaatttgg gataaaatag aaatatatca
     1921 agcaatttat aatgatgaaa tagcaaataa attaaaaaac gaaaatgaat agcacttttt
     1981 ccatcatcga ataccaagct ttttctaaag aagatttaaa agaaattttc aaagaaaagg
     2041 ccgaagggtt ttataaagag ctagaagact ttgcaaaaaa taatgaaaat cttctaggct
     2101 ttaaaaacaa aaattcctta aaagctaaaa attatgtcgg cattatacag actaaaagcg
     2161 gggttttgga gattttgcca aaatgcacga atttagatag ttataaaaaa gaagatagtt
     2221 cttcaaatca tgacaaagaa aaactaagaa gatgttatga attagacaat atttctaaaa
     2281 ataatgattt ttatgaaaaa gattttaaat ttaatcctaa aaatcttttg ataaatatgc
     2341 taaaaacctt aaaaaactcc ccctttaaaa aatcgcaaat ttcatctttg caaagttcta
     2401 aaattccttt atttgaagtg tttatcacta tgtttttaga tgaatttgat agcgtatata
     2461 aaaaaggctt gatgagatct tatctaagtt gcgaagaaaa tagggctttt ttaaagggaa
     2521 aattactatt taacgagcat atcaagcgaa atttgataca caaagaaaga ttttttacaa
     2581 gcaatgatga gtttgtttta gatatagcac ccaatcgttt gataaaatca acgctaaatt
     2641 ttttaaaatc aaaaacaagt ttgaataaat ttagacttat aaaatctatg caaattctcg
     2701 atgaggtaga attttctaaa aattatgaaa aagattttag ttataaaatt tcaagacatt
     2761 ttgattatta tgaaaacttg cttttgtggt gtaaaatttt cttaaaaaat gaaagtttta
     2821 tgccttatca tggtaaaaat gaagcttttg ctttgctttt tcctatggag aaaatttttg
     2881 aagattatgt agcttatatg ctaaaaaaag taaatccagc tcaagatatt aaagttcaaa
     2941 acaatggaaa gtatttaatc tcaaaaaatg atgaaaattg tttcatgtta aagcctgatt
     3001 tatatataga aaataaaatg atcctagata ccaaatggaa aattccaaat gatagtgaaa
     3061 atgagaaaaa acagggtata gaacaaagcg atttgtatca aatgtttgct tatgcttgca
     3121 aatttaaaat ttatgatatt aaacttgtgt atcctttatg tgaaaaaact caagatttac
     3181 aaagaaaaat cgcagaaaaa ttttttgttt ttaaagcaag cgaacatttg tattttaaag
     3241 aacaagggca aaaagatata aaagtccaag tattttttgc acctttacct ttttaaaaat
     3301 ttgcctatca aatgcactaa aaaaccaaag caagctatag ctatgatgca agcaccgctt
     3361 gagagattaa gataatagct aagtataagt cctaaaatac aaaaaatcat acttaaaaaa
     3421 cttgccaaaa tcatgataaa gccaagtctt ttggtaaaat tttcagcaat aaagcttggg
     3481 atactaagta aagccataac taaaataagc cctacaaggc gtatggaaat aactatgcaa
     3541 aaagccataa gggcgattaa aagataatga aaaaaacttg tattgatacc acgaactttt
     3601 gcaaattccg catcaaagct taatgcttca aattgtctat aaaataaaaa gatcaaaagc
     3661 accaccacgc tatcaaccaa agccataagc cataaatctt gtgttcctac agccaaaatg
     3721 ctcccaaaaa gataagccat taaatctgtg ttataactag ggcttaaatc gattaaaata
     3781 atcccaacag ccattccaaa agcccagatt acagcgataa tactatcact tctgtgttca
     3841 tagcgtttag ctaaaaaagc tactaaaaaa gccaaaaata aagtaaatat tcccgtgctt
     3901 aataaaatag gcaaagagaa ataaaaagct atacctatac caccaaaagc cccatgtgtt
     3961 atacctccag ccatagaaaa aaggcgattt atcatcacca aagtacctat gatcccacaa
     4021 gctatactga ctaaaatcgc tcctagtaaa gcgttttgaa aaaaggtgaa atttaaaatt
     4081 tcaagcatta ttttcctttg aaaattttaa acaaaaattt tcttttttaa attctgtttt
     4141 tttcaaattt cttcttgtaa attcttgttc gcatagtttt ttactatcgc aattttcttc
     4201 atcgcaaaaa caagtattta aactcatttc tacatcacaa aaatgagagt ggttttcgta
     4261 taaatgtttt aaaaatgaac ttttttcttt ttctttagtg ttggtatgca agaaaagttc
     4321 tttgtttaaa tgtgcaattt tatcgctata agctaataca aggttgatat cgtgacaaat
     4381 gagtaaaatt cccatgcctt tttggtgcaa agagcttaga agttcaaaaa tttgtatagc
     4441 agacttgtta tcaacgcttg cggtaggttc atctaaaata agcattttgc attcactagc
     4501 taaggctctt gcgataaaaa cacgttgcct ttgtcctccg cttaaagaat caatggtttt
     4561 gttccaaaat ttttccattc ctacactttt taaagcttgc atagcttttt ctttatcttt
     4621 tttcccataa aaaccaaaaa tttttttact tacaagtccc ataagaacga tttcaagtac
     4681 tcttgggcaa aaattaggat tggctagagt gtgttgagga acatagccta tttcttttct
     4741 ttgaagagct ttgaaatgga tttcattttt ggattttaaa agtcctaaga taagttttac
     4801 gagtgttgat tttcctgcac catttggacc tatgatagag agaaagtctt tattgtcata
     4861 gctaagattg atgtttttta agatgatttc attatcataa gcgtagttta gattagaaat
     4921 ttcaaaaaaa agcatcaaaa aacctgatta taaattatga gaaaaggcat cagcagtttt
     4981 taaaagctca ttttcccaat cataagataa atgatctatt ttgtaaattt ttgcatcaca
     5041 ttctttagca agtgtttttg ctgcattttc agggaaacca ttttgaacaa aaatgacttt
     5101 taaattttta tctttcatta gagtgataag tttttgcaaa tctttgcttt ttggttcctt
     5161 acctaaaatt tctacaggaa tttgcgtaag attatagcgt tttgcaaaat atgtccaaga
     5221 aggatgataa actacaaatt ctctattttt taatttttct aattttgagg caatttgtaa
     5281 atttaaacta tctaattctg ctaaaaattt atctaaattt tctttatata aattttcatt
     5341 ttgtggatat ttttgaatta aggtgtcata aatatttaaa gccatagttt ggactaaaat
     5401 aggatctagc caagtatgag gatcaaaatg ctcatgttcg tggtgttcat gctcatgaga
     5461 gtgttcgtgt gtatcatgag tttgaatcaa agctatgttt ttttgcatat ttacaacttg
     5521 aagttttgaa aaattttgtt taaatttatc cgtaaaaact ttttcaaatt ctaagcctat
     5581 agtgaaataa atatcacttt tttcaagttt tttcatagta cttggtttaa attcaaaatt
     5641 atgctcattg ctatttgggg gcaaaataac attgacatct agagtatttg cagctatttt
     5701 tttaataaaa aatgcttgag gtgctatact gacactaact aaattgctac tagtattttg
     5761 ttcttgctct aaatttttag cttgtgtgaa agtataaaat atccctaaag ataagataaa
     5821 taatagaatt tttttcaaaa tatttccttc gatataaatt ttttaaatta
//
LOCUS       DBBXPZ010000095         5813 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.097, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000095 DBBXPZ010000000
VERSION     DBBXPZ010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5813)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5813)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5813
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.097"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            9..866
                     /gene="cheP"
                     /locus_tag="ACJFD7_001556"
     CDS             9..866
                     /gene="cheP"
                     /locus_tag="ACJFD7_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheP"
                     /protein_id="HGG0860339.1"
                     /translation="MIGDMNELLLKSVEVLPPLPDTVSKLRKYVSEANSNIETMKVAE
                     IISSDPLMTAKLLQLANSPYYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKID
                     VSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRLGIVIFSNFLIQN
                     HKDKDFLAFLNKNENLALAENEFLGVDHISFLGFLLHRWNFDDVLIESICFVRTPHAA
                     REKVKKSAYALAITDHLFAPHDGSSPFNAKAAVALLKEAKTQGINFDLNNLLSKLPNK
                     AKENLNKED"
     gene            894..1373
                     /gene="cheQ"
                     /locus_tag="ACJFD7_001557"
     CDS             894..1373
                     /gene="cheQ"
                     /locus_tag="ACJFD7_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheQ"
                     /protein_id="HGG0860340.1"
                     /translation="MMKSLILPPNEFLDHYILNAEFHRFAGISKNAYKFWKNVEIGRY
                     QGTRIIFLHRNCILEKHQQALRQCSGLNGFVLASAFCSFTGLAPSHLVEKNNSSIYKL
                     LELKEICGIKFVNLKKFYDFLGLNYHQHIYIEKCHFFSPAPFEKRIKITESMCVGYY"
     gene            complement(1342..2652)
                     /locus_tag="ACJFD7_001558"
     CDS             complement(1342..2652)
                     /locus_tag="ACJFD7_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HGG0860341.1"
                     /translation="MNKTLNQKDIKVLGLSSLGGTLEFYDFIIFVFFANYISTNFFPK
                     DLSSFWQMFNTYGIFAAGYLARPLGGVILAHFGDKFGRKRMFMISILLMVIPTFTLAF
                     IPNYESIGFLCIVFLVFIRICQGIAIGGELPGAWVFVYEHAPQGQKRTYLGILTASVV
                     GGILLGSLVFLIMNKIYTQEELHEWAWRIPFFLGGIFGIISAYLRKFLRETPVFEQMK
                     KDKALEKFPLKEVFKKAKMGIVLSMMITWVLTGCIVVMILLMPSYMAKILQINTSIQT
                     YLQIGGILLICLGCIISGILADKMGVIKSCVFFSVFFGIASLLYFNTLYRQNADFNLV
                     ACLYLLVCFFSGVMNFCPLIMSEVFDAKIKFSGLSFSYNIAYAIAGGLTPQLAFFLHS
                     FALNNLSNFWRFSLGLYVFFLAIIALLCAFIFSYLNNTQRTYSQ"
     gene            complement(2636..2812)
                     /locus_tag="ACJFD7_001559"
     CDS             complement(2636..2812)
                     /locus_tag="ACJFD7_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HGG0860342.1"
                     /translation="MAYEDEEDLNYDDYENEDEEYTQNHHKNYNYDDDDYEYDDDNND
                     DDFYEMEIKNEQNP"
     gene            2905..3378
                     /gene="moaC"
                     /locus_tag="ACJFD7_001560"
     CDS             2905..3378
                     /gene="moaC"
                     /locus_tag="ACJFD7_001560"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061799 - cyclic pyranopterin
                     monophosphate synthase activity [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HGG0860343.1"
                     /translation="MKLSHLDEKNHPKMVDVSDKNITLRIATASGMIYMSQEAFDAIK
                     NNTAKKGPVLQTAIVAAIMGAKKTSEIIPMCHPLMLSKIETDIVEFVKECAFKLIVTV
                     KCEGKTGVEMEALSGVSIGLLTIYDMIKAIDKSMRITDIVLESKEGGKSGKFVRS"
     gene            3356..3619
                     /locus_tag="ACJFD7_001561"
     CDS             3356..3619
                     /locus_tag="ACJFD7_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 family protein"
                     /protein_id="HGG0860344.1"
                     /translation="MVNLCDLKKEPQINYPTFWDYKVIFEVHIKASEIFEEILGQREY
                     KFEHSNSSASGKYQSYLLNVYVDSKKDRLDIFDKLKAKAKFVL"
     gene            3609..4769
                     /locus_tag="ACJFD7_001562"
     CDS             3609..4769
                     /locus_tag="ACJFD7_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860345.1"
                     /translation="MYFKKEGKMKNTLIIFENSLSNLGKDEASDLLEDLSFNLAYKQI
                     SHNPHETKKVLNSLLVEFLTILKKLDFFDDENVTKVIKALVKASIVDAQNSLYGYISE
                     AELLNKQIENQKNLIKNQISDNFFEFENILQECSFCDEFSGGLNDAILFDIEMLGILK
                     ETAESAFLTTLEKAEDIELTSSEIAKNLVYNAICEAHFEKERILKISSIILNTAFEIA
                     NESMAYAKDLCLGVIKGTRDGIVLAMEKFKASLTYANFEEDVSLKSKELIGIEDDFIA
                     LLKKEIQLQNDPCKSIVENLLEHELDNLFAKFRRLAGESREQLILVLNDIKKNPKIND
                     FNKLTQRKLNRFKQEIFELEKIASEKYKDLNSKKAKKLGVRLWEKAKKFVKK"
     gene            complement(4788..5546)
                     /gene="exoA"
                     /locus_tag="ACJFD7_001563"
     CDS             complement(4788..5546)
                     /gene="exoA"
                     /locus_tag="ACJFD7_001563"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HGG0860346.1"
                     /translation="MKLLSWNVNGLRAICDKNALDWIAQEQIDFIGFQEIKAHEDKFP
                     KKIYEYPFKHMYFNSAKRAGYSGVMSLCNFNSEVKKCEFFDDEEGRVLEHRFKNIALF
                     NIYFPNGQKDEERLNFKMQFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKA
                     NANTSGFLPIERAWIDDLLKLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDY
                     FFISKGLKDKLKNAFIRDDIFGSDHAPVGIEIDI"
     gene            5664..>5813
                     /locus_tag="ACJFD7_001564"
     CDS             5664..>5813
                     /locus_tag="ACJFD7_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A/FlgG phosphoethanolamine transferase
                     EptC"
                     /protein_id="HGG0860347.1"
                     /translation="MLRLTWLQFTFFNSLMIVLLNFNLFYFVYEKNTQNWFITFVFIV
                     AYFALV"
BASE COUNT         2159 a          802 c          851 g         2001 t
ORIGIN      
        1 aattaaatat gattggagat atgaatgagc ttttattaaa aagcgttgaa gtattgccac
       61 ctttacctga tactgtaagt aagttaagaa aatatgtgag cgaggctaat tcaaatatag
      121 aaactatgaa agttgctgaa atcatttcaa gcgatccgtt gatgacggct aagcttttgc
      181 aattagcaaa ttctccttat tatggtttta caagagaaat tacaaccata aatcaagtga
      241 ttactttatt aggcgttggt aatatcatca atatagttat ggctgactcc attagagata
      301 attttaaaat agacgtttca ccttatggtt taaatactca aaatttttta aaaacgtgca
      361 atgaagaggc aacttttatc gcaaattggc ttaatgatga agataaaaaa ctttctcatc
      421 ttttagttcc ttgtgcaatg cttttaaggc ttggtattgt tattttttca aattttctta
      481 tacaaaatca taaggataag gattttttag cttttttaaa taaaaatgaa aatcttgctt
      541 tagcggagaa tgaattttta ggcgtagatc atatttcttt cttgggattt ttgttacatc
      601 gttggaattt tgatgatgtt ttgattgaaa gtatatgttt tgttcgcact cctcatgctg
      661 ctcgcgaaaa agtgaaaaaa tccgcttatg ctttagcaat aacagatcat ctttttgctc
      721 cgcatgatgg ctcttctcca tttaacgcaa aagctgcagt tgctttactt aaagaggcaa
      781 aaactcaagg aattaatttt gatttaaaca atcttttatc taagcttcct aacaaagcta
      841 aggaaaattt aaacaaagaa gattaaagag cctttttaag gctctaaatt gtagtgatga
      901 aaagtttaat cttacctcct aatgaatttt tagatcacta tattttaaac gctgaatttc
      961 atcgttttgc tggaatttca aaaaatgctt ataaattttg gaaaaatgta gaaataggta
     1021 gatatcaagg aacaagaatt atatttttgc atagaaattg cattttagaa aaacatcagc
     1081 aagctttaag gcaatgtagt ggtttaaatg gttttgtatt ggcaagtgct ttttgttctt
     1141 ttactggatt agctccctct catttagtgg aaaaaaataa ttcttctatt tataaacttt
     1201 tagagcttaa ggagatttgc gggattaaat ttgttaatct aaaaaaattt tatgattttt
     1261 tagggctaaa ttatcatcag catatttata tagaaaaatg ccattttttt agcccagctc
     1321 cttttgaaaa gcgtattaaa atcactgaga gtatgtgcgt tgggtattat taagataaga
     1381 aaaaataaat gcacatagca aagctataat agccaaaaag aaaacataaa gtcccaaaga
     1441 aaaacgccaa aaattactta aattatttaa ggcaaaacta tgcaagaaaa aagcaagttg
     1501 cggagttaaa cctccagcta tagcataagc aatattatat gaaaaagaaa gtcctgaaaa
     1561 tttaattttt gcatcaaata cttcactcat tattaaaggg caaaaattca tcactccgct
     1621 aaaaaaacat acaagtaaat ataagcaagc tactaggtta aaatcagcat tttgtctata
     1681 taaagtatta aaataaagca agcttgcaat tccaaaaaaa acactaaaaa atacacaaga
     1741 tttaataacg cccattttat ccgctaaaat tccacttata atacacccta ggcaaataag
     1801 caaaattcca cctatttgaa gataggtttg tatagaagta ttaatttgaa gtatttttgc
     1861 catataacta ggcataagca aaatcattac aacaatacaa cctgtcaaaa cccaagtaat
     1921 catcatagaa agaacaattc ccattttagc ttttttaaac acttctttta aaggaaattt
     1981 ttctaaagcc ttgtcttttt tcatttgttc aaaaacagga gtttctctta aaaattttct
     2041 caaataagca gaaataatcc caaaaattcc acctaaaaag aatggaattc tccaagccca
     2101 ttcatgaagt tcttcttggg tataaatttt attcataatt aaaaaaacta aactacctaa
     2161 taaaattcca cctacaaccg aagcggttaa aattcccaaa taagttcttt tttgaccttg
     2221 tggtgcgtgt tcgtatacaa aaacccaagc tccagggagt tccccgccta tagctatacc
     2281 ttgacaaatg cgtataaaaa ctaaaaatac aatgcaaaga aaacctatgc tttcataatt
     2341 tggaataaaa gctagagtaa aagttggaat aaccattaac aaaatactaa tcataaacat
     2401 tcttttacgt ccaaatttat ctccaaaatg tgccagtatc acacccccta agggacgcgc
     2461 taaatatcca gctgcaaata ttccataagt attaaacatt tgccaaaaac tacttaaatc
     2521 ttttggaaaa aagtttgttg aaatataatt tgcaaaaaat acaaaaataa taaaatcata
     2581 aaattctaaa gttccaccta atgatgaaag tcctaaaact tttatatctt tttggttaag
     2641 ggttttgttc attcttaatc tccatctcat aaaaatcatc atcattgtta tcatcatcgt
     2701 attcataatc atcatcatca taattataat ttttatggtg attttgtgta tattcttcat
     2761 cttcattttc ataatcatcg taatttaaat cttcttcatc ttcataagcc attgttttct
     2821 ccttaaataa aaatacaaag cttattttat cttaaatttg tttggttttg ctataatttt
     2881 tataattttt taaaaggtga atttatgaaa ttaagtcatt tagatgaaaa aaatcatcct
     2941 aaaatggtag atgtaagcga taaaaatatt actttaagaa tagccacagc tagtggtatg
     3001 atatatatga gtcaagaagc ttttgatgca attaaaaaca ataccgcaaa aaaaggtcct
     3061 gttcttcaaa cagctattgt tgcggctata atgggggcta aaaaaacaag tgaaattatt
     3121 cctatgtgcc atcctttgat gctttctaag attgaaacag atattgtgga atttgttaaa
     3181 gaatgtgcat ttaagcttat tgtaacagtt aagtgtgaag gtaaaacagg agttgaaatg
     3241 gaagctttaa gtggagttag tataggactt ttaactatat atgatatgat caaggctata
     3301 gataaatcaa tgagaattac ggatatagtg cttgaaagca aagaaggagg taaaagtggt
     3361 aaatttgtgc gatcttaaaa aagaacctca gatcaattat cctacttttt gggattataa
     3421 ggtgattttt gaggtgcata ttaaggcaag tgaaattttt gaagaaattt taggtcaaag
     3481 agaatataaa tttgaacatt cgaattcaag tgcgagtgga aaatatcaaa gttatttgtt
     3541 aaatgtttat gttgatagca aaaaagatcg tttggatata tttgataaat taaaagctaa
     3601 agcaaaattt gtactttaag aaagaaggaa aaatgaaaaa tactttaatt atttttgaaa
     3661 attctttatc aaatctcggt aaagatgaag caagtgattt acttgaagac ttgagtttta
     3721 atcttgcgta taagcaaatt tcacataatc ctcatgaaac aaaaaaagtt ttaaattctc
     3781 ttttggttga atttttaact attttgaaaa aacttgattt ttttgatgat gaaaatgtta
     3841 caaaggttat caaagctttg gttaaggcga gtattgtaga tgctcaaaat tcactttatg
     3901 ggtatattag cgaagctgaa ttattaaaca aacagattga aaatcaaaag aatttgatta
     3961 aaaatcaaat cagcgataat ttttttgaat tcgagaatat tttacaagaa tgttcttttt
     4021 gtgatgaatt tagtggcggt ttaaatgatg ctattttatt tgatatagaa atgcttggaa
     4081 ttttaaaaga aaccgctgaa agtgcttttt taactacatt agaaaaggct gaagatatag
     4141 aacttacaag tagtgaaata gctaaaaatc ttgtatataa tgccatttgt gaagctcatt
     4201 ttgaaaaaga aagaatttta aaaatttcaa gtattatttt aaataccgct tttgaaatag
     4261 ctaatgaatc tatggcttat gcaaaagatc tttgtttagg cgtgattaaa ggcacaaggg
     4321 atggtattgt tttggcaatg gaaaaattta aagcttcatt aacttatgca aattttgaag
     4381 aagatgttag tttaaaaagc aaagaactaa taggtataga agatgatttt attgctcttt
     4441 taaaaaaaga gattcaatta caaaatgatc cttgtaagag tatagttgag aatttgctag
     4501 agcatgaact tgataatctt tttgctaaat ttagacgtct tgcaggtgaa agcagagagc
     4561 aactaatatt agttttaaat gatattaaga aaaatccaaa gattaatgat tttaacaaac
     4621 ttactcaaag aaaattaaat cgttttaaac aagaaatttt tgaattagaa aaaattgcta
     4681 gtgaaaaata caaagattta aattccaaaa aagctaaaaa gctcggtgta agactttggg
     4741 aaaaagcaaa aaaattcgtt aaaaaataat atcccatttt tgggatatta aatatctatt
     4801 tctataccta caggtgcgtg atcagagcca aaaatatcat ctcttatgaa agcgttttta
     4861 agtttatctt ttaaaccctt tgaaatgaaa aaataatcaa tcctccagcc tacatttctt
     4921 tctcttgctt tcattctata gctccaccac gagtattttt ctttgatttc accattaatt
     4981 tctctaaaag tatctataaa accaagcttt agcaaatcat caatccaagc tctttctata
     5041 ggtaaaaaac ctgaagtgtt ggcattggct tttggatgag taagatcgat ttctttatga
     5101 gcggtattga catcaccgca aatgataatt tcaaatccat cctttaaaag cttatccaaa
     5161 tacactaaaa aatctgcata aaattgcatc ttaaaattta aacgctcttc atctttttga
     5221 ccatttggaa aatagatatt aaaaagtgca atatttttaa agcggtgttc taaaacccta
     5281 ccttcttcat catcaaaaaa ttcgcatttt tttacttcgc tattaaaatt acaaagactc
     5341 attaccccag aataccccgc tcttttagca gaattaaaat acatgtgttt aaaaggatat
     5401 tcataaattt ttttaggaaa tttatcttca tgtgctttga tttcttgaaa acctataaaa
     5461 tcaatttgtt cttgtgctat ccaatcaagt gcatttttat cacaaatagc tcttaagcca
     5521 ttgacattcc atgaaagtag tttcattatt ttccttaaaa ttttcattaa aagtgtaaat
     5581 cataacataa aaagatttaa aactacaatc catttaaaaa aattcaataa aattaaaagc
     5641 ttaaatttgg aggtgggatt tatatgctta gattaacttg gcttcagttt acttttttta
     5701 attctttgat gattgtattg ttgaatttta atttatttta ttttgtgtat gaaaaaaata
     5761 cacaaaactg gtttataact tttgttttta ttgtggccta ttttgccctt gtt
//
LOCUS       DBBXPZ010000096         5796 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.098, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000096 DBBXPZ010000000
VERSION     DBBXPZ010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5796)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5796)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5796
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.098"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            86..448
                     /locus_tag="ACJFD7_001565"
     CDS             86..448
                     /locus_tag="ACJFD7_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HGG0860348.1"
                     /translation="MSNYPKAIGPYSAYREVNGLLFISGQLPINPDSGEIESHDIKEQ
                     TKQSLKNIGAILEENGISYDKVVKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAV
                     KDLPKKAKVEIEVIAQKG"
     gene            452..754
                     /locus_tag="ACJFD7_001566"
     CDS             452..754
                     /locus_tag="ACJFD7_001566"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860349.1"
                     /translation="MLGIVFSLFSVFLLVFMLYKKINAHMALLLSGLLLLSLAAIFGL
                     SPHIVTKDSLNLGFFDIFQVFNQTMSKYISRAWTYTYDYSRFFCLYGSCRGFLCTF"
     gene            720..1893
                     /gene="dcuC"
                     /locus_tag="ACJFD7_001567"
                     /pseudo
     CDS             720..1893
                     /gene="dcuC"
                     /locus_tag="ACJFD7_001567"
                     /inference="COORDINATES: protein motif:HMM:NF015563.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015556 - C4-dicarboxylate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015740 - C4-dicarboxylate transport
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
     gene            1906..3070
                     /locus_tag="ACJFD7_001568"
                     /pseudo
     CDS             1906..3070
                     /locus_tag="ACJFD7_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aspartate aminotransferase family
                     protein"
     gene            3080..4447
                     /gene="purB"
                     /locus_tag="ACJFD7_001569"
     CDS             3080..4447
                     /gene="purB"
                     /locus_tag="ACJFD7_001569"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HGG0860350.1"
                     /translation="MTGISVFDHKLLADSWSTQEMRAIFCEQNCIQKWLDVEAALAKA
                     QAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEY
                     VHFGVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQA
                     LPITFGHKVAIWLSELERHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLE
                     NLGLDVPNISWQPARDRFIELGFVLGNINATFNKIAHEILILSHNEIDEVAEPFGKGQ
                     VGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMF
                     LMLSVVLANMKFALSDLEVKKDKMLKNLNTLNGFVLAERVMFALSDHYGKQHAHEIVY
                     ENAMLGIEKQKTFKEVLLADKRVSKVLKEKEIDALLDATTYVGYAPKLVDEFLEKIKN
                     SAILK"
     gene            4456..4662
                     /locus_tag="ACJFD7_001570"
     CDS             4456..4662
                     /locus_tag="ACJFD7_001570"
                     /inference="COORDINATES: protein motif:HMM:NF015905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HGG0860351.1"
                     /translation="MFYSEILADFIFNLKYENIPNTVVQRAKELMLDSLGTAIAASKE
                     ECVLNAFKAFENLSTEKKYSYLGK"
     gene            4691..5308
                     /locus_tag="ACJFD7_001571"
     CDS             4691..5308
                     /locus_tag="ACJFD7_001571"
                     /inference="COORDINATES: protein motif:HMM:NF015905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HGG0860352.1"
                     /translation="MLDGIASHALDFDDTHTEAILHASAILTPLCLSYGFHVNKDAKK
                     IIKAFIVGWEIAARVGIASKGTFHKRGFHTTAIAGIFRSVSASAILLDLNKEQIINAL
                     GLAGSFASGINEFLSNGSNSKVLHIANAIKNGIIVAHFAKNHMSGPLSIFEGRDNIFK
                     CFGIEEECDKTELNKALGEIWQTMQESSLIQVVILLMGLLIVLLL"
     gene            5230..5793
                     /locus_tag="ACJFD7_001572"
                     /pseudo
     CDS             5230..5793
                     /locus_tag="ACJFD7_001572"
                     /inference="COORDINATES: protein motif:HMM:NF040249.3"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         2008 a          880 c         1028 g         1880 t
ORIGIN      
        1 ttattatgat aataaactat tgacaaatta ttattgtagt gataaaatgc attctgctta
       61 atctatattt aacaaaggag aattcatgtc aaactatcca aaggccattg gtccatactc
      121 agcttacaga gaagtaaatg gacttttatt tatatcagga caacttccta tcaaccctga
      181 ttcaggcgaa atagaaagcc atgatatcaa agaacaaacc aaacaatctt tgaaaaatat
      241 cggtgctatc ttagaagaaa atggtatcag ttatgataaa gtggttaaaa ccacttgctt
      301 tttagctgat attaatgatt ttgtagcatt taatgaaatt tatgctgaat tttttaaagc
      361 tccttatcca gcaagaagtg cttttgcagt aaaagatcta ccaaaaaaag ctaaagtaga
      421 gatagaggtc atcgctcaaa aaggataaaa tatgctaggt attgtttttt ctttatttag
      481 tgttttttta cttgttttta tgctttataa aaaaatcaat gctcacatgg cactgctttt
      541 aagtggcttg cttttacttt ccttagctgc tatttttgga ctttctccac acattgttac
      601 caaagattct ttaaatctag gtttttttga tatttttcaa gtttttaatc aaaccatgtc
      661 caagtacatt agtagagctt ggacttacac ttatgactat agcaggtttt tctgcttata
      721 tggatcatgt aggggcttct tatgcacttt ttaaagtttt tgaaaaacct ttaaaagccg
      781 taaaatctcc ttatgtttta ctcatagttg cttattttat cgtgcaattt ttagttcttt
      841 tcatcccttc tcacgcagac ttggcacttt tacttatggt tactatgtat cctatacttg
      901 tacgctctgg tgtttcaaaa ctttctgcct taagtgtgat tgctatttgt caatatatcg
      961 atcatggacc tggaagtgga aatgtgatca tggcctcaga aaaagctgaa gttgatcctg
     1021 caatttattt tgttcattat caactcccta caaccttgcc tatcattata gctgtaagta
     1081 ttgcaatata tctttgcaat aaattttttg acaaaaaaga taattttgtc ttcaatgcgc
     1141 aagaaattga aaaaagaact aaatgaaaat gaaggtaaag aaaaagaact taaaaagcct
     1201 cctagaattt atgcgatttt acctataatt cctttggttt taatcctagg atttagttcc
     1261 gtgcttgata gcatcttggt tttaatggga ataagtagcg ctgaagaagt taaagcagct
     1321 gctagcactg caattaaaat gaatgttcca gtagcaatgg tgatttcaac ttttgtggct
     1381 attatttttg aaatgatacg ctataaaagt atagtagaaa ctcttaattc tatgatgatt
     1441 ttctttaaag gaatgggaca tttatttgtt atcacagttt cactcatcgt ttgtggtcaa
     1501 gtatttgcaa gtggtctttt atctgtaggt tttgtagata ctttaataga attttgcaaa
     1561 aatgcaggat ttggagtttt ggctattatt atcgctgttt caatcttact tgcggtttgt
     1621 gctttcttaa tgggttcagg aaatgcggca ttttttagct ttgccccact tatcccaaat
     1681 atagcaaaac actttggagt tgaaactatc actatgatag caccgattca aatcgtgacg
     1741 ggctttggaa gatgtgttag tcctattgca ctagcgatct tagctatctc agctattgca
     1801 agagtaagtc cttttgccgt ggttaaaaga acagctattc ctatgcttgt agcggctatt
     1861 gtaaatgtta ttatgactta tatctatctt taaaaaggag aaaaaatgaa ctcaaaaact
     1921 aaacttattc attgtgacag aggcgatcaa ggcgctgaag taagatcagt caatcctaca
     1981 cttatgcgtg catcaaccat actttttaaa gatcacgcaa cttggcaaaa atacagagaa
     2041 ttaagaaaaa cagatcgtgt tttaagttat ggatctagag gaacaacaac caattttgaa
     2101 cttgaaaaac ttatttgcac tctagagggt ggttatagag cacaactttt cccaacagga
     2161 cttgcagcat tagctatggt gcttttaaac tatgcaagca aagatacaca ttttttaatc
     2221 actgatgcaa tttatgggcc tgtaagaacg atttgcgaat tatttttaga aaaaatgggc
     2281 attgaaattg attttttaaa agctgatgca agtgatgtag aagaaaaaaa tcaaacctaa
     2341 taccaagctt atcctatgtg aaagtccagg ttctatactt tatgaaatca tagatttacc
     2401 aaaactttgc aaaattgccc atgcgcataa tatccctgta gctattgaca atacttattc
     2461 tagtggatat tttctaaatc ctttagaact tggagtggat atttcagtta tcgccgctac
     2521 aaaatatctt agtggacact ctgatgtaac catgggtata gtagtaatca acgaaaaaga
     2581 atggaaaaat tttgacaaac ttccagaagc tttaggcttt acaacaagcc ctgatgatgc
     2641 ttacttagta cttcgtggta tgagaacact agatgtaaga atgaaagctc atgaaaaaag
     2701 tgctgatgaa attgtagagt ttttacaaag cagaaaagaa attaaaacaa ttttctatcc
     2761 aaaactcaaa tcccactcaa atcatgaaat tttcatgcgt gatcataaag gtgcaaatgg
     2821 tatgattacc atagaatttg cagaaggtta taacaaagag gatgctatta aatttgtaga
     2881 taaactagaa tacttttcaa ttggtgctag ctggggtgga tatgaaagct tagccaccgt
     2941 aactactccg cctagaactg caacagacct aagtgcaaga ggaccatttg taagatttca
     3001 tataggtctt gaagatacta aagatttaat tgctgattta acacaagctt ttgatagtat
     3061 taaaaaataa ggagataaga tgacaggaat tagtgtattt gatcataaat tattagcaga
     3121 ctcatggagc acgcaggaaa tgcgtgctat tttttgcgaa caaaactgca tacaaaaatg
     3181 gctcgatgtt gaagcagctt tagcaaaagc acaagcaaaa cttaaaatta tccctaaaaa
     3241 agcagctgat gagattgcaa aaaaagctca ttataaattt atggatatgg actttatctt
     3301 tgctgaattt aaaaaaacca aacacccttt agttcctact gtaagaggat tagaaaaagc
     3361 ttgcgataat aatttaggtg aatatgtaca ttttggagta accactcaag atatcatcga
     3421 tacgggactg gttttacaat ttaaagaagc aatgactctt gtaaaaagcg aattaaaagc
     3481 tatcgcaaaa gccttagcga aactagctaa aacccataaa aacactgcta tgatgggaag
     3541 aactttagca cttcaggctt tgcctattac ttttggacat aaagtggcta tttggttaag
     3601 cgaacttgag cgtcattttg aaagaatact tgaacttgaa aaaagacttt atgtaggcag
     3661 tatagtaggc gctgtaggaa ctaaagcaag tttaagtgat gagtgcaatg aagtagaaaa
     3721 actcacttta gaaaatttag gacttgatgt gcctaatatt tcttggcaac ctgcacgtga
     3781 tcgctttata gaacttggtt ttgtactagg caatatcaac gcaaccttta acaaaatcgc
     3841 tcatgaaatt ttaatccttt cacataatga aattgatgaa gttgctgaac cttttggcaa
     3901 aggacaagta ggatcaagca ctatgccaca caaaagaaat cctgcagtaa gcgaaaatgc
     3961 agttacagta agcaatgcct ttaaggcaaa tttagccatt ttaagcgata ttgaaagaca
     4021 tgaacatgaa agagatggtc aagtttggaa aatggaatgg aagcttttac ctgaaatgtt
     4081 tttaatgctt tctgtggttt tagcaaatat gaaattcgct cttagtgatt tagaagtaaa
     4141 aaaagacaaa atgcttaaaa atttaaatac tcttaatggt tttgttttag cagagcgtgt
     4201 tatgtttgca ttaagcgatc attatggaaa acaacacgcc catgagattg tttatgaaaa
     4261 tgctatgcta ggtatcgaaa aacaaaaaac ctttaaagaa gttttacttg cagataaaag
     4321 agtatctaag gtattgaaag aaaaagaaat cgatgctttg cttgatgcaa caacctatgt
     4381 aggatatgca ccaaaacttg tagatgaatt tttggaaaaa atcaaaaata gtgctatttt
     4441 aaaataggaa aaatcatgtt ctatagtgaa attttagcgg attttatttt caatcttaaa
     4501 tatgaaaata tccctaatac agttgttcaa agagctaaag aacttatgct tgatagcctt
     4561 ggaacagcta tagcagcaag caaagaagaa tgtgttttaa atgcttttaa agcttttgaa
     4621 aatttaagca cagaaaaaaa atactcttat ttgggtaaat gatcaaaaat tagatcctat
     4681 atacgcagcc atgctagatg gcatcgcttc ccatgcgtta gattttgacg atacacatac
     4741 agaagcgatt ttgcatgcaa gtgcaatttt aactccactt tgtttaagtt atggttttca
     4801 tgttaacaaa gatgcgaaaa aaatcatcaa agcttttata gtaggctggg aaattgcagc
     4861 tagagtaggc attgcaagca aaggtacttt tcataagcgt ggttttcata ccactgctat
     4921 tgcaggaatt tttagaagcg taagtgcaag tgcaatcttg ttagatctta acaaagaaca
     4981 aatcatcaat gctttaggac ttgcaggaag ttttgcaagt gggattaatg agtttttatc
     5041 caatggatct aattcaaaag ttttgcatat tgccaatgct attaaaaacg gtattatagt
     5101 agctcatttt gctaaaaacc atatgagtgg acctttgagt atttttgaag gtagggataa
     5161 tatctttaaa tgttttggca tagaagaaga atgcgataaa acagaactta acaaagcctt
     5221 aggagaaatt tggcaaacta tgcaagaatc aagccttatc caagttgtca ttttgctcat
     5281 gggcttattg attgtgctat tgctttaaaa aatgatggtt taaaagctga tgaaattaaa
     5341 agtattcatt gttttgtaga tgaagttcct atttctttta tctgcgatcc tttggaagca
     5401 aaatacactc caaatagtgc ttatgaagct aaattttcca tgctttttta atgactctag
     5461 gattctttga tggtaaaatc actcttgaat cttatgaaaa tttaaagcgt gaagaagtac
     5521 tagaatttgc taaaaaaaat cagttacgaa aaaagaaaat ctcaaggctt tccaaaatat
     5581 tttccagggc atttagaagc cagtttgcaa gatggacgca caatccaaaa agatgttttt
     5641 ataaataaag gtaattttga taatccatta agttttgaag aattaaaagc taaattttta
     5701 gccaatgcac aaatttacct tgataatgct aaagctaaca aaattctaga tcaaatcatc
     5761 aatctagaaa atttaaacca cttttctttt taaata
//
LOCUS       DBBXPZ010000097         5653 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.099, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000097 DBBXPZ010000000
VERSION     DBBXPZ010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5653)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5653)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5653
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.099"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..126
                     /locus_tag="ACJFD7_001573"
     CDS             <1..126
                     /locus_tag="ACJFD7_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860353.1"
                     /translation="MKKIILFLLCVGFAFACSEHSHTDFKDLNKTEYNSQLKDKI"
     gene            123..1127
                     /gene="cfbpA"
                     /locus_tag="ACJFD7_001574"
     CDS             123..1127
                     /gene="cfbpA"
                     /locus_tag="ACJFD7_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HGG0860354.1"
                     /translation="MKKIFFMFLTAVSFLGASELNIYSARHYNADFEIIKKFEEKTGI
                     KVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIP
                     AHLRDKDKEWFAITKRARIIAYNKNTNIDISKMKNYEDLAKAEFKGEIVMRSATAPYS
                     KTLLASIIANDGNKEAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIG
                     LLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSP
                     EIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEVGFR
                     "
     gene            1127..2743
                     /gene="cfbpB"
                     /locus_tag="ACJFD7_001575"
     CDS             1127..2743
                     /gene="cfbpB"
                     /locus_tag="ACJFD7_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HGG0860355.1"
                     /translation="MYKTLKYYKLGAILLALFLALPIFGIFAELFYILFQNFNTSDLT
                     QFSSIKENLSHFFDYLFLKFIKDTFIISMGVLCLSLILGVSSAYLIANYDFYFCKILE
                     KLLILPLAIPAYILAFVYVGIMDFQGFFHENFGFRIDFFNHYGVIFVLAISLYPYIYL
                     FAKTAFKSEAKEAYEVAKIMKYSEFRIFTRVALLSARPAIFSGALLVLMETLSDYGAS
                     AYLGVDTFSAGIFKLWYDLNDSYSSSVLSGILMLFVFLIMYVDYYYKNKHHYSFNQNL
                     TLFIKKRKLNPIKQILSCIYCFMIAFVGFILPFIWLVYWGLKDHKLFESQFYIISFQT
                     IILALVTALITTFLAYFLMFSSRIVKNHFFNLFILKISSLGYSIPAAALGISIIVLFV
                     FLDKIFHMSLLGNSLFVLIFAYIIRFLASAIYSLEGGYSKIHLNIDEASLNLRASYFI
                     LFFKIHTPLMKHFLFLAFIIVFIDTIKELPLSRILAPFGFETLSVKAFWFASDERIYD
                     AALPSLFIVFLSLMVVVWMDKITRKDDVRN"
     gene            2727..3635
                     /gene="cfbpC"
                     /locus_tag="ACJFD7_001576"
     CDS             2727..3635
                     /gene="cfbpC"
                     /locus_tag="ACJFD7_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0860356.1"
                     /translation="MMLEIKNLSKNFGKIQALENINLHVKEGEFLSILGGSGSGKSTL
                     LRIIAKLEQASSYDLFSCKGEVALMFQNYALFPHLNVEKNILFALYDKKDKNQILNHL
                     LKTFEIEDLRYKKIDEISGGQAQRVAFARAIARGCQLLLLDEPFSNLDQNLKQDLRRE
                     LKKMIENQDITAIMVTHDIEDAYCMSDQITFLEKGKILAHANPKELYFKPDFKSAQIL
                     PDLNIIEEKLDLEDEFFAWIASKNYIFGYAELKIGNRFEAKILQKEFLGAFYRLKLRY
                     KNIEFFMLLSSNYNLEEKINFDIINF"
     gene            3671..4876
                     /locus_tag="ACJFD7_001577"
     CDS             3671..4876
                     /locus_tag="ACJFD7_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase family protein"
                     /protein_id="HGG0860357.1"
                     /translation="MKNLLIIGAGGVSRVATVKCAMNSDTFSKITLASRTKSKCDEIA
                     TFIKERLGVQIETAQIDADDSNAVVELIKKTGAQILLNVALPYQDLSLMDACIKAGID
                     YIDTANYEHPDLAKFEYKEQWARNDEFKQAGILGLLGSGFDPGVTNVFCAYAQQNLFD
                     EISYIDILDCNAGDHGYAFATNFNPEINLREVSAKGRYWENGKWIETEPMEIKMEWDY
                     PEVGVKDSYLLYHEELESLVKNIKGLKRIRFFMTFGQSYLTHMKCLENVGMLGIKPVI
                     HQGKEIIPIEFLKTLLPDPASLGPRTKGYTNIGCVIRGKKDGKDKQVYIYNVCNHEEC
                     YKETGAQAVSYTTGVPAMIGTKLIAKGIWQGKGVFNMEEFDAKPFMEELNSQGLPWKI
                     IEMTPSLGE"
     gene            complement(4904..5566)
                     /gene="sodB"
                     /locus_tag="ACJFD7_001578"
     CDS             complement(4904..5566)
                     /gene="sodB"
                     /locus_tag="ACJFD7_001578"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HGG0860358.1"
                     /translation="MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKD
                     TEFVGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSMDANLQAA
                     LEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
                     LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHP
                     VK"
BASE COUNT         1939 a          717 c          960 g         2037 t
ORIGIN      
        1 atgaaaaaaa taattttatt tttactatgc gttggctttg cttttgcttg ctctgaacat
       61 tctcataccg attttaaaga tcttaataaa accgagtata attctcaatt aaaggataaa
      121 atatgaaaaa aatcttcttt atgtttttaa cagctgtttc atttttaggt gctagtgagc
      181 ttaatattta ctcagcaaga cattataatg ctgattttga aatcataaaa aaattcgaag
      241 aaaaaacagg tattaaggtc aatcatactc aagctaaagc ttcagaactt attaaaagac
      301 tttctcttga aggaagtaat tctcctgctg atattttcat cacagctgat atttcaaatc
      361 ttacagaagc taagaattta ggacttttat cccctgtttc atcaaaatat ttagaagaat
      421 ttatacccgc tcatttaaga gataaggata aagaatggtt tgcgattaca aaaagagcaa
      481 gaattattgc ttacaacaaa aacacaaata ttgatattag caaaatgaaa aattatgaag
      541 atttagcaaa agctgaattt aaaggagaaa ttgttatgag aagtgctaca gctccttata
      601 gcaaaactct tttagcatct attatagcta atgacggaaa taaagaggct aaagcatggg
      661 ctaaaggtgt gcttgaaaat cttgcgacaa atccaaaggg tggggataga gatcaagcca
      721 gacaagtatt tgcaggcgaa gctaaatttg cagttatgaa tacttattat atagggcttt
      781 taaagaattc taaaaatcca aaagatgtag aagtggggaa ttctttgggt attatttttc
      841 ctaatcaaga caatagagga acgcatatta acattagcgg tattgctatg acaaaatcaa
      901 gtaaaaatca agatgcggct aaaaaattta tggaatttat gttaagtcct gaaattcaaa
      961 aaattcttac tgatagtaat tatgaatttc ctataagaaa tgatgtagaa ttaagccaaa
     1021 cggtaaaaga ttttggaact ttcaaagaag atcaaatccc tgtgagtaag atagcagaaa
     1081 atattaaaga agcggttaaa atttacgatg aagtcggttt tagataatgt ataaaacctt
     1141 aaaatactat aaactcgggg caattttact tgcccttttt cttgctttac ctatttttgg
     1201 tatttttgct gaactttttt atattttatt tcaaaatttt aatacaagtg atttaaccca
     1261 attttcatct attaaagaaa atttaagtca tttttttgat tatttatttt taaaattcat
     1321 caaagatact tttataatta gcatgggagt attgtgttta agcttgattt tgggtgtgag
     1381 ttctgcttat ttgattgcaa attatgattt ttatttctgt aaaattttag aaaaattact
     1441 cattttaccc ttagccatac ctgcttatat tttagccttt gtttatgtgg gaattatgga
     1501 ttttcaagga ttttttcacg aaaattttgg ctttaggata gattttttca atcattatgg
     1561 tgttattttt gttttggcta tttctttata tccttatatt tatttatttg ctaaaacagc
     1621 ttttaaaagt gaagccaaag aggcttatga agtagctaaa atcatgaaat attctgaatt
     1681 tagaattttt acacgcgtgg cacttttgag cgcaaggcct gccatttttt ctggagcttt
     1741 attggtttta atggaaactt taagtgatta tggcgcaagt gcttatttgg gagtggatac
     1801 tttttcggct ggaattttta aactctggta tgatttgaat gattcttatt cttctagtgt
     1861 tttatcgggt attttaatgc tttttgtatt tttgattatg tatgtggatt attattataa
     1921 aaataaacat cattatagtt ttaatcaaaa tttaactctt tttatcaaaa aaagaaaatt
     1981 aaatcctatt aaacaaattc tatcctgtat ttattgtttt atgattgctt ttgtaggttt
     2041 tattttacct tttatttggc tagtttattg ggggttaaaa gatcataagc tttttgaatc
     2101 acaattttat attatcagtt ttcaaactat aatcttagct ttagtcactg ctttaattac
     2161 cactttttta gcttattttt tgatgtttag ttctaggata gttaaaaatc atttttttaa
     2221 tttatttatt ttaaaaataa gttctttggg ttattctata cctgctgctg ctttagggat
     2281 tagcattata gtgctttttg tatttttgga taaaattttt cacatgagtt tattgggaaa
     2341 ttctttattt gttcttattt ttgcttatat aattcgtttt ttagcgagtg caatttattc
     2401 tttagaagga ggatatagta aaattcatct aaatattgat gaggcaagtt taaatttaag
     2461 agcgagttat tttattttat tttttaaaat tcacacacct ttaatgaaac attttttatt
     2521 tttggctttt attattgttt ttattgatac gattaaagaa cttcctttaa gtagaatttt
     2581 agcgcctttt ggctttgaaa ctttaagtgt taaagctttc tggtttgcaa gtgatgaaag
     2641 aatttatgat gcagctttgc cttccttgtt tatcgttttt ctttctttaa tggttgttgt
     2701 ttggatggat aaaatcacaa ggaaagatga tgttagaaat taaaaattta tctaaaaatt
     2761 tcggaaaaat acaagcttta gaaaatatca atcttcatgt caaagaagga gaatttttaa
     2821 gcattttagg aggtagtgga agcggaaaaa gcacgctttt aaggattatt gctaagcttg
     2881 aacaagctag ttcttatgat ttgttttctt gcaaaggtga agtggctttg atgtttcaaa
     2941 attatgcttt atttcctcat ttaaatgttg agaaaaacat actttttgca ctttacgata
     3001 aaaaagataa aaatcaaatt ttaaatcatt tgcttaaaac ttttgaaatt gaagatttaa
     3061 gatataaaaa aatcgatgaa atttcaggag ggcaagcgca aagagtggct tttgctagag
     3121 ctatagcaag aggatgtcag cttttgcttt tagatgaacc tttttctaat ttggatcaaa
     3181 atttaaaaca ggatttaaga agagaattga aaaaaatgat agaaaatcaa gacattacgg
     3241 ctattatggt aactcatgat attgaagatg cttattgtat gtctgatcaa atcacttttt
     3301 tagaaaaagg aaaaatttta gctcatgcaa atcctaaaga gctttatttt aagcccgatt
     3361 ttaaaagtgc gcaaatttta cctgatttaa atatcataga agaaaaactt gatttagaag
     3421 atgaattttt tgcttggata gcttcaaaaa attatatttt tggttatgca gaacttaaaa
     3481 taggaaatcg ctttgaggct aaaattttac aaaaagaatt tttaggggct ttttatagac
     3541 ttaagttaag atataaaaat atagaatttt ttatgttatt aagctcaaat tataacttag
     3601 aagaaaaaat aaattttgat attatcaatt tttagttaaa attcctaaaa atcttttaag
     3661 gacaaatttc atgaaaaatc ttttaatcat aggcgcaggt ggagtaagtc gtgtggctac
     3721 tgtaaaatgc gcaatgaatt ctgatacttt tagcaaaatc actttagcta gtagaacaaa
     3781 aagcaaatgt gatgaaatcg ctacttttat caaagagcgt ttaggggttc aaattgaaac
     3841 agcgcaaatt gatgctgatg atagcaatgc ggttgtagaa cttatcaaga aaacaggagc
     3901 gcaaatttta ctcaatgttg ctttgcctta tcaagatttg agtttaatgg atgcttgtat
     3961 aaaagcaggg attgattata tagatacggc aaattatgaa catcctgatt tagctaaatt
     4021 tgaatacaaa gagcaatggg cgagaaatga tgagtttaaa caagcaggaa ttttaggact
     4081 tttaggaagt ggatttgatc ctggtgtaac taatgttttt tgtgcttatg cacagcaaaa
     4141 tttatttgat gaaatttctt atatagatat tttagattgc aatgcaggtg atcatggcta
     4201 tgcttttgcg acgaatttta accctgaaat caatctgcgt gaggtttctg ctaaagggcg
     4261 ttattgggaa aatggcaagt ggatagaaac agaaccgatg gaaataaaaa tggagtggga
     4321 ttatccagaa gtaggagtga aagatagcta tttgctttat catgaagaac ttgaaagctt
     4381 ggtaaaaaat atcaaaggtt taaaaagaat acgctttttt atgacttttg gacaaagtta
     4441 tttaactcac atgaaatgtc ttgaaaatgt tggaatgcta gggattaaac ctgtgataca
     4501 ccaaggtaaa gaaatcattc ctatagaatt tttaaaaacc ttgcttcctg atcctgcaag
     4561 tttaggacca cgcactaaag gttataccaa tataggttgc gtgattcgtg gtaaaaaaga
     4621 tggaaaagac aaacaagttt atatttataa tgtttgcaat catgaagaat gttacaaaga
     4681 aactggcgcg caagctgtga gctatactac aggtgttcct gctatgatag gtacgaaatt
     4741 aatcgctaaa ggaatttggc aaggaaaagg cgtgtttaat atggaagaat ttgacgctaa
     4801 gccttttatg gaagagctga attctcaagg acttccttgg aagattatcg aaatgactcc
     4861 aagcttagga gagtaaaaaa ggcatcgttt tgatgccttt aaattatttt acagggtgaa
     4921 gttcatttgc ataaaagcta actgatccca tgccttcttt taaagcccat tcgtaagctt
     4981 ttgcaacaaa ttcccagtta atatgagcat agaatttttc taaataagca gggcgtgcat
     5041 tacgatgatc tacataataa gcatgttccc aaacatctac aacaagtaaa ggaactttat
     5101 cttcagtaat tggtgtagct gcgtttgaag tacctacaaa ttctagtttt tgatttttag
     5161 tattataaac taaccaaaac catcctgaac caaaaactcc tgtagcacct ttgatgaatt
     5221 cagctttgaa attttctaaa gatccaaatt ctttttctag tgccgcttgt aaattagcat
     5281 ccatactttg acatgaaccg ccacagccac agcctgtact tggcttaatg caatcaaaat
     5341 aaaaatcatg attataaact tgagctgcgt tattaaatac gcccccattt gaagttttga
     5401 taatacttac aagatcttta cctacaaatt cagtatcttt aataagatta tttagatttg
     5461 taacataagt attgtgatgt tttccatgat gatagctaaa agtttcagca ctcaaaaaat
     5521 caccaaaagc attggtatca taaggtaatt ttcttaattc aaacataatt tctcctttat
     5581 ttttagtttg atattgaaaa tattaccata ataatattaa aaagagtaaa aatatcttaa
     5641 aagcttagtg ggt
//
LOCUS       DBBXPZ010000098         5548 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.100, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000098 DBBXPZ010000000
VERSION     DBBXPZ010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5548)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5548)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5548
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.100"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            37..2166
                     /gene="chuA"
                     /locus_tag="ACJFD7_001579"
     CDS             37..2166
                     /gene="chuA"
                     /locus_tag="ACJFD7_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HGG0860359.1"
                     /translation="MHPNKKFYKLSLFVLLLITNLNAQESNEAINLQKVVVSATGFEQ
                     DADSNLRNVISIEGKDLQNKGYVSLEQALERISGISFVNFGLGHNIDMRGQGDKSNIA
                     VKVMIDGHAINVLDNSHGVTPLDSINLDNVERIEIIPGGGSVLYGNGTRGGVINIITK
                     KQKSDAFAINLKSSAYDHGRLGGNLGINGAKQINENLAFSFDIQSFNLDGYQEGYNEK
                     GYFINTKTYIDINDNSDLTLGYNYFKSKNTSSGYLTKAQAQSNPTQKGKSDNITQINR
                     PEISLDYHYYFDDIWEFNLEAFWQNQKINYLKDVSTMSYMNMSLPVYQNGSGFEDTLT
                     GISLKNKLNYANNSYFIFGYEFANHDAKRKSLVYYSVPSVINYHRMTTLIDMTKQSHS
                     IFALDSHNFNEFFTLSGGARYEFSSYNTDKSYKNEMSMNGRPPSPTIIDSTTLFDTNK
                     NANNFAFEITPNFKYSDTGKLYIKYERGFVSPSPAQFVNKDKNSQKYYSANLNPEIFD
                     TFELGIDDFWWDFYGFNLTLFYTLSKDEISYLGNPHSTSGSWWKYYNIDQTRRLGVEL
                     SLSQNFLDDDLIFRESLTYLDAKISKGVNDGMRIPYVSKIKATAGLEYAWNKNFSNFI
                     DLTYFSRAKDGGTINENTGKMSKNSWIRDYFLTDIGMKYNYKKLQILAGIRNLFDKRY
                     YTYQDSINDQYLVGNGRNYYVEFKYAF"
     gene            2141..3127
                     /gene="chuB"
                     /locus_tag="ACJFD7_001580"
     CDS             2141..3127
                     /gene="chuB"
                     /locus_tag="ACJFD7_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FecCD family ABC transporter permease"
                     /protein_id="HGG0860360.1"
                     /translation="MLNLNTHSKILVIIGLLVAYIIASFTALCLGDENLNPKELFSYI
                     FSQDEILRQIIIDGRLPRIIMAILIGMLLASSGAITQNVFSNPIADPYIIGIASAATF
                     GAVLAYLLKLNDYYYGILGFVCSAFFALGVFKISSKASIATLLIIGIAASSFLGAFTS
                     FFTYLIGEDSFKIVAWLMGNIGNASWFRVGILILPLIFCLFYFYAHKNELNILLSGDD
                     EARNLGVNAQKLKINLLIVSSLAVSFAVAFSGLIGFVGLIIPHTIRLLLKNYDNALVI
                     PLCTAFGGLFLLICDTLARTLLAPVQIPIGILTAFFGAPIFLYLALSARRFL"
     gene            3127..3903
                     /gene="chuC"
                     /locus_tag="ACJFD7_001581"
     CDS             3127..3903
                     /gene="chuC"
                     /locus_tag="ACJFD7_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HGG0860361.1"
                     /translation="MLKIQDLSFAYHQKDLLKNIHLELKNQAFIGILGPNGSGKSTLL
                     KLILKNLSPNKGEISLFNTNIKDFSLKEFAKICGFVPQKSELNTPLKVIDVLLMSKYA
                     NLKHAFSSYSKEDILEIKEFAKDLRLENFLERSILSLSGGEFQRMLLARALLKKPKIL
                     FLDEPTSALDLNYAIELLSLCEKRVKEKNIAVVAILHDLNLASMFCDKILFLKEGEIK
                     YFGTSKELFTQEILKEIYDLNCEIIYKNSKPYILALKEKK"
     gene            3900..4706
                     /gene="chuD"
                     /locus_tag="ACJFD7_001582"
     CDS             3900..4706
                     /gene="chuD"
                     /locus_tag="ACJFD7_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HGG0860362.1"
                     /translation="MKKILIIMSLFLITLNAKERLVVLDPASIETLFMLKAEDQIVGI
                     ATLQHSNIYPKDQTSKLTSVGTFSNPSLEKIVALKPSLVILSSYSLNLEEGLKNFGIK
                     SINLKAEHLEDITKNITTLGQITKKEKEAELLKQEFNQKFKKLSDKPLNKSAIYLYSS
                     NPLMAFNDNSLIADILRLIGIKNLSPQSQISRPVISAEYILKQNPDILILGMNAKNNL
                     LDTNALLKNTKAVKTGSIYFNKDTPILLRLSPKIIDRIQEFKTKLENNNF"
     gene            complement(4703..>5548)
                     /locus_tag="ACJFD7_001583"
     CDS             complement(4703..>5548)
                     /locus_tag="ACJFD7_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM/SPASM domain-containing protein"
                     /protein_id="HGG0860363.1"
                     /translation="KIYIELSDICGLKCDFCPSQKGIRGVMSEEKFQNLAYEISNKAE
                     LFTFHLLGDPLLLPNLENYLKIAKDEAMKLEITTSGFYLNSKNQALLLGYENIHQINI
                     SLMSFLSQSKISLEQYFKPILELCKKHLEQKSLSFINLRLWNLDANFKAPKSNLKIYE
                     FLAKEFEAKIDANLSKNRLQRHILLHQNKLFKWPNLKDEPLYKKGKCHALKEQIGILS
                     DGSLVPCCLDTKADINLGNVFENNFDKLFRSPRIKMMKKAFEEDKRIEKLCQTCEFFK
                     ARLGD"
BASE COUNT         1980 a          817 c          845 g         1906 t
ORIGIN      
        1 aaattatcat tatttatttt atttaaggag taaaatttgc acccaaataa aaagttttat
       61 aagttatctt tatttgtatt attactaata actaatttaa atgcacaaga atcaaatgaa
      121 gctatcaatc tacaaaaagt tgttgttagt gcaacaggtt ttgaacaaga tgcagattca
      181 aatttacgca atgtaatcag catagaaggc aaagatctgc aaaataaagg ttatgtttcc
      241 ttagaacaag ccttagaaag aatttcgggc attagttttg taaattttgg acttggacac
      301 aatatagaca tgcgtggaca aggagataag tccaatatag ctgtaaaagt tatgattgat
      361 gggcatgcta ttaatgttct tgataattcc catggtgtaa ccccgctaga tagtatcaat
      421 ttagataatg tagaacgcat agaaatcata cctgggggtg ggtctgtgct ttatggaaat
      481 ggtactaggg ggggggtgat taatatcatt acaaaaaaac aaaaatcaga tgcttttgct
      541 ataaatttaa aaagcagtgc ttatgatcat ggtagattag gtggaaattt aggtatcaat
      601 ggcgccaaac aaataaatga aaatttagct tttagctttg atatacaaag ttttaacctt
      661 gatggatatc aagaaggtta taatgaaaaa ggttatttta tcaacacaaa aacctatatt
      721 gatattaatg ataatagcga cttaactttg gggtataatt attttaaaag caaaaatacc
      781 agcagtggtt atctaacaaa agcacaagct caaagcaatc caactcaaaa aggtaagagt
      841 gataatatca cacaaatcaa tcgccctgaa atttctttgg attatcatta ctattttgat
      901 gacatatggg aatttaacct agaagctttt tggcaaaatc aaaagatcaa ttatctaaaa
      961 gatgtttcta caatgagcta catgaatatg agtcttcctg tatatcaaaa tggaagtggt
     1021 tttgaagaca cgcttacagg gataagttta aaaaacaaac taaattatgc aaataattct
     1081 tattttattt ttggttatga atttgcaaac catgatgcaa aaagaaagag tttggtgtat
     1141 tatagcgttc caagtgtcat aaattatcac aggatgacaa ctttaataga tatgactaaa
     1201 caaagccatt ctatttttgc tcttgattct cataatttta atgaattttt tactttatcc
     1261 ggtggagcta gatatgaatt tagctcttat aataccgata aatcttataa aaatgaaatg
     1321 agtatgaacg gaagaccccc atcacctact atcatagact caacaacact ttttgatacc
     1381 aataaaaacg ccaataattt tgcttttgaa atcactccaa attttaaata ctcagacaca
     1441 ggaaagcttt atatcaaata cgaaagaggt tttgtctctc caagtccagc acaatttgtc
     1501 aacaaggata aaaattcaca aaagtattat tctgcaaatt taaatcctga gatctttgat
     1561 acctttgaac taggtattga tgatttttgg tgggattttt acggctttaa tctaacttta
     1621 ttttacaccc taagcaaaga tgaaatttct tatcttggaa accctcattc tactagtgga
     1681 tcttggtgga aatattataa tatagatcaa actcgccgtt taggagtaga attaagtctg
     1741 agtcaaaatt tcttagatga tgatttaatc tttagagaaa gtctaactta tcttgatgct
     1801 aaaatttcta aaggtgttaa tgacggcatg agaattcctt atgtttcaaa aatcaaagcc
     1861 acagctgggc ttgaatacgc ttggaataaa aatttctcaa attttattga tttaacctat
     1921 ttttctagag caaaagatgg tggaactata aatgaaaata caggaaaaat gtctaaaaat
     1981 tcttggataa gggattattt tttaacagat attggtatga aatataatta taaaaaatta
     2041 caaattttag caggaattcg caatcttttc gataaaagat actacaccta tcaagacagt
     2101 ataaatgatc aatacctagt tgggaatggc agaaactact atgttgaatt taaatacgca
     2161 ttctaaaatt ttagtgatta tagggctttt ggtagcttat ataatcgctt cttttacagc
     2221 actttgctta ggagatgaga atttaaaccc aaaagaactt ttttcatata tctttagcca
     2281 agatgaaatt ttaagacaaa tcatcataga tggacgctta ccacggatta taatggcgat
     2341 tttaatcggt atgcttctag ctagtagtgg ggctatcact caaaatgtat tttcaaatcc
     2401 tatagccgat ccttatatca taggtatagc ttctgcggca acctttggag cggttttggc
     2461 gtatttgtta aaattgaatg attattatta tggaatttta ggttttgttt gctctgcctt
     2521 ttttgcccta ggagttttta aaatttcttc taaagcttct atagcgactt tactcattat
     2581 cggcatagca gcttcatctt ttttaggagc ttttacttct tttttcactt atcttatagg
     2641 cgaggattct tttaaaatag tcgcttggct tatgggaaat ataggcaatg cttcttggtt
     2701 tcgtgtggga attttaatct tgcctttaat tttttgtttg ttttattttt acgctcataa
     2761 aaacgaatta aacatacttt taagcggaga tgatgaagct agaaatctag gggtaaatgc
     2821 tcaaaaatta aagataaatt tactcatcgt ctcatccttg gctgtatctt ttgcggttgc
     2881 ttttagcgga cttataggct ttgttggact catcattcct catactataa gacttttgct
     2941 taaaaattat gataatgcct tagttatccc tttatgtaca gcatttggag gattattttt
     3001 acttatttgt gatactttag caagaactct tttagcccct gtacaaattc cgattggaat
     3061 tttaactgca ttttttggag ctcctatttt tttatacttg gctttaagtg ctaggagatt
     3121 tttataatgc taaaaataca agatttaagc tttgcttatc accaaaaaga tttactaaaa
     3181 aacattcatt tagaacttaa aaatcaggct tttataggaa ttttagggcc aaatggctca
     3241 ggcaaaagca ctcttttaaa acttatactt aaaaatttaa gtccaaataa aggagaaata
     3301 agtcttttta atacaaatat caaagatttt tctcttaagg aatttgccaa aatttgtggc
     3361 tttgtgcctc aaaaatcaga attaaacacc cctttaaaag tcatcgatgt gcttttaatg
     3421 agtaaatatg cgaatttaaa acacgctttt agttcttatt ctaaagaaga tattttagaa
     3481 attaaagaat ttgctaagga tttaagactt gaaaattttc tagaaagaag catactttct
     3541 ttaagtgggg gtgaatttca aagaatgctt ttagcaagag ctttgcttaa aaagccaaaa
     3601 attctttttt tagatgaacc cacttcagcc cttgatttaa actatgctat agagctttta
     3661 agcctttgcg aaaaacgagt taaagaaaaa aatatagccg ttgttgctat cttgcatgat
     3721 ttaaatttag cttctatgtt ttgcgataaa atcctttttt taaaagaagg ggaaataaag
     3781 tattttggaa cgagtaaaga gctttttact caagaaattt taaaagaaat ttatgattta
     3841 aactgcgaga ttatttataa aaattctaaa ccttatattt tagctttaaa ggagaaaaaa
     3901 tgaaaaaaat tttaattatt atgagtttgt ttttaatcac actaaatgca aaagaacgcc
     3961 ttgtagtgct tgatcctgca agcatagaaa ccctttttat gcttaaggct gaagatcaaa
     4021 tcgtaggcat tgccacttta caacactcaa atatctatcc taaagatcaa acctcaaaac
     4081 ttacaagcgt aggcactttt tcaaatcctt cacttgaaaa aatagtagca ttaaaaccaa
     4141 gtttggtgat tttaagctct tattctttaa atttagaaga aggacttaaa aattttggta
     4201 tcaaaagcat caatttaaaa gccgagcatt tagaagatat aacaaaaaat atcacaacct
     4261 taggccaaat caccaaaaaa gaaaaagaag cagagctttt aaaacaagaa tttaaccaaa
     4321 aatttaaaaa attaagcgat aaacccctaa ataaaagtgc gatttatctt tattctagca
     4381 accctttaat ggcctttaat gataattctt taatagctga tattttaaga cttataggga
     4441 ttaaaaattt aagcccgcaa agtcaaattt caagacctgt tatatcagca gaatacatac
     4501 tgaaacaaaa tccagacata ctcattcttg gaatgaatgc caaaaacaat cttttagata
     4561 caaatgcttt attgaaaaat accaaagcag ttaaaacagg aagtatttat tttaacaaag
     4621 atacacctat attattacgt cttagtccta agataataga tagaattcaa gaatttaaaa
     4681 caaagctaga aaataacaat ttttaatcac ccaatcttgc tttaaaaaat tcgcaagttt
     4741 gacaaagttt ttctatgcgt ttatcttctt caaaagcttt tttcatcatc tttatacgcg
     4801 gtgatctaaa aagcttatca aagttatttt caaaaacatt tcccaagtta atatctgctt
     4861 tagtatccaa acagcaaggc accaaacttc catcacttaa aatcccaatt tgctctttta
     4921 aagcatgaca ttttcctttt ttataaaggg gttcatcttt taaatttggc catttaaaaa
     4981 gtttattttg atgaagcaaa atatgtcttt gcaagcgatt tttacttaag tttgcatcga
     5041 tcttagcttc aaattctttg gctaaaaact cataaatttt taaatttgac ttaggtgctt
     5101 taaaattagc atctaaattc caaagtctta gattgataaa agaaaggctt ttttgctcta
     5161 aatgcttttt gcaaagttct aaaataggct taaaatactg ttctaaagaa attttgcttt
     5221 gacttaaaaa agacattaaa gaaatattga tttgatggat attctcatac cctaacaata
     5281 aagcttgatt tttagaattt agataaaagc cacttgtagt gatttcaagt ttcatagctt
     5341 catcttttgc gatttttaga taattttcca aattaggtaa aagcaaagga tcgcccaaaa
     5401 gatgaaaggt aaaaagctca gctttattag aaatttcata agctaagttt tgaaattttt
     5461 cttcactcat taccccgcga attccttttt gagaaggaca aaaatcacat tttaaaccac
     5521 aaatatcgct taattctata tatatttt
//
LOCUS       DBBXPZ010000099         5525 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.101, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000099 DBBXPZ010000000
VERSION     DBBXPZ010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5525)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5525)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5525
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.101"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(48..191)
                     /locus_tag="ACJFD7_001584"
     CDS             complement(48..191)
                     /locus_tag="ACJFD7_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860364.1"
                     /translation="MCKDQEYIEQRKVLWEKSFEAFKDDKVYQKEQLELAEAGINDGL
                     EED"
     gene            complement(203..334)
                     /locus_tag="ACJFD7_001585"
     CDS             complement(203..334)
                     /locus_tag="ACJFD7_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002887130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860365.1"
                     /translation="MFYKKDDKIRLLRVSNMQALNRFDKLKGAITKIILDSGFKPDK"
     gene            complement(421..679)
                     /locus_tag="ACJFD7_001586"
                     /pseudo
     CDS             complement(421..679)
                     /locus_tag="ACJFD7_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846614.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system death-on-curing
                     family toxin"
     gene            complement(686..826)
                     /locus_tag="ACJFD7_001587"
     CDS             complement(686..826)
                     /locus_tag="ACJFD7_001587"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860366.1"
                     /translation="MKTTEYNTQQKNNKEYLAEREAVKKNYGKNGKRVRKTCYKCGVS
                     KT"
     gene            1100..1327
                     /locus_tag="ACJFD7_001588"
     CDS             1100..1327
                     /locus_tag="ACJFD7_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860367.1"
                     /translation="MTLIIENVNENFLPAFKGLAKSINAKCKISKPKLSSFESKILNA
                     SKELDKEKKVNTALSFNSHQDFMKAYQNGKI"
     gene            1314..1596
                     /locus_tag="ACJFD7_001589"
                     /pseudo
     CDS             1314..1596
                     /locus_tag="ACJFD7_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782140.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YafQ family
                     toxin"
     gene            1608..1730
                     /locus_tag="ACJFD7_001590"
     CDS             1608..1730
                     /locus_tag="ACJFD7_001590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860368.1"
                     /translation="MDKCRKKAKVTTTEKLILVLWLSCGVAAIVLLLCYSLLKI"
     gene            complement(1864..2385)
                     /locus_tag="ACJFD7_001591"
     CDS             complement(1864..2385)
                     /locus_tag="ACJFD7_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860369.1"
                     /translation="MAENYIAENNLGGTREQQVAAAAKGLENLAARGDLQGLLHYANM
                     NTAKPNADRNHDVSNKSYYSPSSVGANNAHNNDAVANQNKLNSLGTTGGGDNIRNEFN
                     QQSGAAISNFKNQGTSISNVVNNSAKDAIVEQDANRRMGVNPSSYIIQDASKSGNELA
                     KEAQGLFDAMSKK"
     gene            complement(2387..2563)
                     /locus_tag="ACJFD7_001592"
     CDS             complement(2387..2563)
                     /locus_tag="ACJFD7_001592"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860370.1"
                     /translation="MYAEKLGNIIKSNDSVASAYSNALSTSTGSEFADVKQKAHSYSE
                     ASQYSEAIQVSNFT"
     gene            complement(2579..2791)
                     /locus_tag="ACJFD7_001593"
     CDS             complement(2579..2791)
                     /locus_tag="ACJFD7_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860371.1"
                     /translation="MNEALSDKSSFSETDKKALEGSISAYASGSAGIEIFGNGGKIGG
                     EIKGTASIGTGSTETQEYSRSLSKEG"
     gene            complement(2975..4678)
                     /locus_tag="ACJFD7_001594"
     CDS             complement(2975..4678)
                     /locus_tag="ACJFD7_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004311681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
                     /protein_id="HGG0860372.1"
                     /translation="MLFFSTLFFAPSFLFGATNIANGNLIYTWGYGDVINEIMQAVKG
                     ITTETDYIVNAALAISLLLFSIKKAMDGQTSPVFEFGKMFMLFAVVWYMFLKAPNDNN
                     HRFMIYDEVTSKDYVISQIPIGIGKSFALMTQFEKVILEAMEKHFSTPQSTNFSNAGL
                     GFSLQVMSTLPSVKLSAIDATLQKNIDFYFRNCVSVGILLNQQGRNLFQNSDNLIQDL
                     FTNIGNGSQLTPLFENNNNIEKQSVVPCSDAGPQIVEMIKNDTDEAMKIHAALLGMAN
                     DMANYEQKFLGAAQIYNEQAVSARSYLQQSMIMLASQDAIINTAKSVGLNPASVAANT
                     AYADQQFYASMQAQGHLAQTYLPLAKAYLTAIIIGLSWLVALLSIVFGSYAHIKMFFT
                     LCIWIVLWTPILCIINFINDFNLMNVAQVITGGKAALSLGDNILIFKEVANRSNFMNY
                     LVMSTPVLAYAIAKASEQGFVTFASGLSQALTGASRAAGSFANQQALSTQTSIAAPRG
                     DEVWAMNAGVMSLQSAISAGGGRFSMSSITGGGTTARDVNTGTSFALGNHGEISNMNR
                     T"
BASE COUNT         1821 a          955 c          799 g         1950 t
ORIGIN      
        1 acggtttttt aaaaaaacta atataaaata tatggctaat tatataatta atcctcctct
       61 aagccatcat taattcctgc ttctgcaagt tcaagctgtt ctttttgata cactttatca
      121 tctttaaagg cttcaaaact tttttcccat aaaacctttc tttgctctat atattcttga
      181 tctttacaca tattaatcct ttttatttat caggtttaaa accactatct aaaattattt
      241 ttgttattgc acctttaagt ttatcaaaac gatttaaagc ttgcatatta ctaactctaa
      301 gcaatcttat tttatcatct tttttataaa acactttaaa aacttcatca ctttgtttgt
      361 gttttactat atcatctaaa gtaggactac ctatgaattc atattccttt gtaaaatctt
      421 atctaaatct aaaaagtgca tacctagaaa tatcgaagtc cgtttatttc catcagcaaa
      481 tggatgaaat tttacacagg aaaatattaa atgtgtaatt ttatcagtta ttgtaggata
      541 ataatcatcg ttttttatat gctctaatgc actagccaaa tatcctactt tgtgtttcat
      601 tataaccact taatccgcct gttttttcaa taatcttttc gtgtatagca atagcttcgc
      661 ttagttctat atatttcatt tatttttaag tctttgaaac accgcattta tagcaggttt
      721 ttctaactct ttttccattt ttgccatagt tttttttaac tgcttctctc tcagctaaat
      781 attctttatt atttttttgt tgcgtattat attctgtggt tttcatttta ccaccctctt
      841 tattctttca attaatatcc taaatactgt atagactatt ttaacattta tatttgatta
      901 gcaaatcaat atgaagctaa aaaaattaat ttgctaatta tacccaaatt aattttcatt
      961 aagcaataaa taaaacaatc aagtcaaaaa aaaatccgtt tcaaacccct aaaaaatagg
     1021 cattctgtaa caaaaatact tgcaaaaatt attaaaaaat ggtataatta tgttatataa
     1081 attgagaaag gagttgctta tgactcttat tattgaaaat gttaatgaaa attttttacc
     1141 tgcattcaag ggtttagcaa aaagcataaa tgccaaatgt aaaatttcta agcctaagtt
     1201 gagtagtttt gaaagtaaga tattaaatgc aagcaaagaa cttgataaag aaaaaaaagt
     1261 caatactgca ttaagcttta attcgcatca agactttatg aaagcttatc aaaatggcaa
     1321 aatataaaat ttattaccat aaagatttta taaaagctta caaaaaaaat aagcgatgaa
     1381 gagcgtaaaa taactgatga agttattgta aaactttcta atgatgagaa tttagaacct
     1441 aaatataaag atcatcaatt aaaaggtgta ttaaaagatt ttagagaatg tcatataaag
     1501 tctaacttgt tattaattta tcaaaaacat aataatgagt tagagctaaa tattttaaaa
     1561 ctaggtagtc atagtaagtt atttaaaaaa tattgaaagg aataaagatg gataaatgta
     1621 ggaaaaaagc aaaagtgact acaaccgaaa aactcatact tgttctttgg ctttcttgcg
     1681 gagttgcagc tattgttttg cttttgtgtt attccttgct aaaaatataa aaatagttcc
     1741 ctatgatgag aaaaagcatg ggggaacaag tgaaattggg ggatatatag aaagcgatcc
     1801 tcgtaaattt gattatatat tcggtgctat acgagatcac taagcctaac taaaaagcta
     1861 gacttatttt ttgctcatag catcaaataa accttgagct tcttttgcaa gctcattacc
     1921 tgatttactt gcatcttgta ttatataaga gctaggattt actcccattc tcctgttagc
     1981 atcttgttct actatggcat ctttagcact attattgacc acattagaaa tacttgttcc
     2041 ttgatttttg aaattactta tagcagcccc actttgttgg ttaaattcat ttcttatatt
     2101 atcccccccc cctgttgttc ctaagctgtt taacttattt tgattagcta ctgcatcatt
     2161 attatgagca ttattagctc ctacacttga aggactgtaa taagatttat tgctaacatc
     2221 atgatttcta tcagcatttg gcttagctgt attcatatta gcataatgca acaagccttg
     2281 caaatctccc cttgcggcta agttttctaa ccctttagct gcagcagcaa cttgttgttc
     2341 tctagttcca cccaaattat tttcagcaat gtaattttca gccatattag gtaaaattac
     2401 ttacctgtat agcttcactg tattgacttg cttcactata agaatgtgct ttttgtttga
     2461 catcagcaaa ttcactacct gtgcttgtag atagagcatt agaataagca gaagccacac
     2521 tatcattaga tttaatgata ttgccaagtt tttcagcata cattttatca aatgcagcct
     2581 acccttcttt acttaggctt cttgaatatt cttgtgtttc agttgagcct gtgcctattg
     2641 aagctgtccc tttaatttct ccacctattt ttccaccatt tccaaagatt tcaatccctg
     2701 ctgagccact agcataagcg ctaatacttc cttctaaagc ttttttgtct gtttcagaga
     2761 agctagattt atcgcttaat gcttcattca tagtttcttt taaagctttc gtttctgctt
     2821 tctcaattgc tttagtatct tctatactcc tgcaccatga tttctaagat aatcagaggt
     2881 aataccgtga ttaatgcctg ttttgtgagt atcggcaata gaattagcaa gagaatcttg
     2941 tctagtttga gtttcgcttt gtgcgtgttt tgcatcaagt cctattcata ttagaaattt
     3001 caccatgatt tcccaaagca aaacttgtac ctgtattcac atctctagct gttgttccac
     3061 cccctgttat actagacatg ctaaatctac caccccctgc acttatagca ctttgcaagc
     3121 tcatcacccc tgcattcatc gcccaaactt catctcctct aggagcagca atgctagttt
     3181 gtgtagataa ggcttgctga tttgcaaagc ttccagcagc tcttgaagca cctgttagag
     3241 cttgagataa tccagaagca aaagttacaa atccttgttc acttgcttta gctatagcat
     3301 aagctaaaac aggagtactc attacaagat aattcatgaa atttgatcta tttgctactt
     3361 ctttgaatat aagaatgtta tctcctaagc ttaaagctgc ttttccacct gttatcacct
     3421 gtgcaacatt cataagatta aaatcattta taaaattaat aatacaaagt ataggagtcc
     3481 aaagtactat ccaaatacat agagtaaaaa acatcttaat atgagcataa gagccaaaca
     3541 caatagaaag caaagcaaca agccaagaca aacctatgat aatagctgtt aaataagctt
     3601 tagctaaagg caaataagtt tgtgccaagt gtccttgtgc ttgcatactt gcataaaatt
     3661 gctgatccgc ataagcagta tttgcagcca cagaagcagg atttaaacct actgatttag
     3721 cggtattaat gattgcatct tgagaagcaa gcattatcat ggattgttgc aaataagatc
     3781 tagcacttac agcttgttcg ttatagattt gtgcagcgcc taagaacttt tgctcataat
     3841 ttgccatatc attcgccata ccaagcaaag cagcatgaat cttcatagct tcatctgtat
     3901 cgtttttaat catttcaacg atttgaggac ctgcatcaga acaaggcaca acactttgtt
     3961 tttcaatatt attgttattt tcaaacaaag gagtaagctg agagccattg cctatgtttg
     4021 tgaaaagatc ttgtattaaa ttatcagagt tttgaaaaag atttctacct tgttgattaa
     4081 gcaagatacc tactgaaacg cagtttctaa agtaaaaatc aatatttttt tgtaaagttg
     4141 catcaatagc cgaaagcttt acgcttggca aagtactcat cacttgaagt gaaaaaccta
     4201 aacctgcatt agaaaaattt gtagattgtg gagttgaaaa atgtttttcc atagcttcta
     4261 ggataacctt ctcaaattgc gtcatcaatg caaagctttt tcctatacct ataggaattt
     4321 gagaaatgac ataatctttg ctagtgactt catcgtaaat catgaagcgg tgattattgt
     4381 catttggtgc ttttaaaaac atgtaccaca ctacagcaaa aagcataaac atttttccaa
     4441 attcaaacac aggacttgtt tgtccatcca ttgctttttt gatactgaag agcaataatg
     4501 aaatagccaa ggctgcatta acgatataat ctgtttcagt ggttatacct ttaaccgcct
     4561 gcatgatttc atttatcaca tcgccataac cccaagtata gattagattt ccattagcta
     4621 tgtttgtagc accaaataaa aatgaaggtg caaaaaacaa agtgctaaag aataacaagt
     4681 aaaatctttt catggattat attaaagaag ttaaagagtt tgtttggtgt aattataaaa
     4741 gggtgcaacg ccaaagggct gcaacccttt agcgttaatt taccgcccag aagggaggtg
     4801 agttttaatg ctcaaaattg ttctaataat tatactctta atgctttgct atgtcaaggc
     4861 ttattgagta tcccctgctt ttgcagggtt tagagcaatc cctttggttt aaccaaacaa
     4921 acttttaact aagcctatct tcctttctat tgatttattt tattttttaa tttatatttt
     4981 tcttgcttat gctaaaagat aagattcaat cataaataaa atgtattaag aagtcaaaga
     5041 atttgtttgg tataattgca ttaagggttt tgccacaagg ctgcaaccct gtggcataat
     5101 cacaccctag aaagggggtg aactatatga cacgactcat acttataatt atactaattt
     5161 gtataattac tgtcaaggct tattagcctt gccctttggg ggtgagtttc cccttgtggc
     5221 ttaccaaaca aacttttaac taaacttctc ttcttctatt gaatttctat attattttat
     5281 atttttaata tttgcaccaa ataaaaatga aggtgcaaaa aacaaagtgc taaagaataa
     5341 caagtaaaat cttttcatgg actatattaa agaagttaaa gagtttgttt ggtataatta
     5401 taaaaggtag atgccaaagg cggctacctt tggcattaat cataacctag aaaggcggtg
     5461 attaaattgt ccaataaaat tatagtaata attatactac tttgtataat tatagtcaag
     5521 tgtta
//
LOCUS       DBBXPZ010000100         5459 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.102, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000100 DBBXPZ010000000
VERSION     DBBXPZ010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5459)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5459)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5459
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.102"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            5..1279
                     /gene="cmeD"
                     /locus_tag="ACJFD7_001595"
     CDS             5..1279
                     /gene="cmeD"
                     /locus_tag="ACJFD7_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HGG0860373.1"
                     /translation="MFEKYLKSAIFLALYPLAMLASNLHEFIALSQNNESYLIKQMQS
                     EQANLDKEQAFRNYLPSLSLNSAYVANNKDRFIIDPQESLFAKVSLNFLLFDGGAREA
                     NLRALESREKLSLLDKEQNKNYLALNAITLYFNTLSLEKILLANQQKVSFLKSTFERL
                     QKFYDAGLSPKDELESIKAKYHLSLLELSQNELKLANIQKEIKILSDMDFKVQGNAFL
                     ENPQQEKSQNYEVMIAKEQINLAKESVNLAKAEYFPKFYIQDNFNFYKNNYNPKVPAP
                     FANLADQFLEKYSQGNQFILGMEWKIFDFNARAKEVEKERLNVQIANANARFSERKNK
                     EELNYLDKSLKVLQEQILALNLSLNAANLAFESVDKKYQAGLVSYVEYLQALEVKFKA
                     QSDLELAKNEFEITKANYYFNAGIDLNSKVKE"
     gene            1276..2016
                     /gene="cmeE"
                     /locus_tag="ACJFD7_001596"
     CDS             1276..2016
                     /gene="cmeE"
                     /locus_tag="ACJFD7_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeE"
                     /protein_id="HGG0860374.1"
                     /translation="MKKILFLLLVFNCAFGEEIYASFNVEASKQSKLALESIGLVQKI
                     PVEIGQKVNKGELLLALDQESEKIALQNAQNSYQLALVEYENTKSRMQKIKAVENVID
                     KQSYEDMKAKFDAANLNLNKAKINIAYYKNIMAKKELRAPYDAIIANKFIQVGEGVGG
                     VAQPLIEIFSYPQSKLILSFDEKYKDKVRLGDDFFYKIDQNGTELKGKISLIYPSIEV
                     KTRKIYAEVQTTNLTPGLFGEGRIITKD"
     gene            2019..5036
                     /gene="cmeF"
                     /locus_tag="ACJFD7_001597"
     CDS             2019..5036
                     /gene="cmeF"
                     /locus_tag="ACJFD7_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeF"
                     /protein_id="HGG0860375.1"
                     /translation="MFKLAINRPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIK
                     ITSKINGDLNFVESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAA
                     NDVRDKIGTLSLPSKPEIEKISSDSGSAISLFLYSKDKLQLMREINDKIKPFLQRVEG
                     VGKIEAKGFLEPQIRIELKPNELRKYNLNALDVANIIKSQNFKQALGELNNNQDNYII
                     KGYFEATNLEELSNLRIKTGVFLSDIANISSLYEDEKQSALYEGKEGVLLELGKITNY
                     NTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVIV
                     FLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI
                     ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGIS
                     VASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENLLYKILQNKV
                     KFILATLVFIGLSFALATRIGLDFLPMEDDSEIQVLLESKKDLSLEAMKEKSLNLLEK
                     IKNDSNVKYAFLLVGYDDAKDATKAKIYVKLKNLDERNLRQSAIVSLYRQKFQDESLK
                     IKILELPKIEGAGIDDPVQFLILGDDLNTLKEAASQAKEILGTNARIVDISDNANATK
                     DEVALHINKEKAKLLDVNPQYIAGVLGYSFSQLSVGSMDRGNSKDDIILSFAPEFKKN
                     IEALKRISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQ
                     KLLLDNMDKILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFI
                     LPLIIMITMPLAFGGASIGLFITGHNFSLFVLIAIILLFGMVGKNAILLVDVANKKCH
                     EGLDPDKALLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLIS
                     STLLTLLVVPALFKFCFKLDSKLRKIYEREKLN"
     gene            complement(5060..>5459)
                     /locus_tag="ACJFD7_001598"
     CDS             complement(5060..>5459)
                     /locus_tag="ACJFD7_001598"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HGG0860376.1"
                     /translation="MTNILILEYKNENTLELFEAFADESEHLKYCVNFEVDREEYKKF
                     RQNIHNKENMKWKFNALAKLFSNYFNTLECTPQNDLSEIRQKYLILVKLYHPDFHQGK
                     SAIEKAYAREQFEKIQIAYDNLKALYKNNT"
BASE COUNT         2005 a          801 c          857 g         1796 t
ORIGIN      
        1 caaaatgttt gaaaaatatt taaaatcagc tatattttta gctctttatc ccttagcaat
       61 gttagcttct aatttgcacg aatttatagc actaagtcaa aataatgaat cctatctcat
      121 taagcaaatg caaagcgaac aagcaaattt agacaaagaa caagctttta gaaattacct
      181 accctctctt agtctaaact cagcttatgt agccaacaat aaagatcgct tcattatcga
      241 tccacaagaa agtttatttg ctaaagtttc tcttaatttt ttgctttttg atgggggtgc
      301 tagagaggct aatttaagag ctttagaaag cagagaaaaa ttaagccttt tagacaaaga
      361 acaaaataaa aattaccttg ccctaaatgc aatcacactt tattttaaca ccttaagtct
      421 tgaaaaaatt ttactagcca atcaacaaaa agtatctttt ttaaaatcaa cttttgaaag
      481 attgcaaaaa ttttacgacg caggacttag ccctaaagat gaacttgaaa gcattaaggc
      541 taaataccat ttaagcttat tagagctcag tcaaaatgaa ttaaaacttg ccaatataca
      601 aaaagagatt aaaattttaa gcgatatgga ttttaaagtg caagggaatg cttttttaga
      661 aaatccgcaa caagaaaaaa gtcaaaacta tgaagtaatg atagctaaag aacaaatcaa
      721 tcttgctaaa gaaagtgtaa atttagcaaa agctgaatat tttccaaaat tttatattca
      781 agataatttt aacttttata aaaacaatta taatccaaaa gttccagctc cttttgcaaa
      841 tttagcggat caattcttag aaaaatattc tcaaggtaat caatttattt taggtatgga
      901 atggaaaatt tttgatttca atgcaagggc gaaagaagtt gaaaaagagc gtttaaatgt
      961 tcaaatagcc aatgcaaatg caagatttag cgagagaaaa aataaagaag aattaaatta
     1021 tttagacaaa agtttaaaag ttttacaaga acaaatttta gctcttaatc ttagcttaaa
     1081 tgctgcaaat ttagcttttg aaagtgtaga taaaaaatac caagcaggac ttgtttctta
     1141 tgtagaatat cttcaagctt tagaggttaa atttaaagca caaagcgatt tagagcttgc
     1201 taaaaatgaa tttgaaatta ctaaagcaaa ttattatttt aatgcgggta tagatcttaa
     1261 ttcaaaggtt aaagaatgaa aaaaattcta tttttacttc ttgtttttaa ttgcgccttt
     1321 ggcgaagaaa tttacgcaag tttcaatgta gaagcatcaa aacaaagcaa acttgccctt
     1381 gaaagcatag gtttggttca aaaaattcct gtagaaattg gacaaaaagt caacaaagga
     1441 gaacttttac ttgctcttga tcaagaaagt gaaaaaatag ctcttcaaaa tgctcaaaat
     1501 tcttatcaac ttgcccttgt agaatacgaa aataccaaaa gtaggatgca aaaaatcaaa
     1561 gctgtagaaa atgttataga caaacaaagc tatgaagata tgaaagctaa gtttgatgct
     1621 gctaatttaa atttaaacaa agcaaaaatc aatatagctt attataaaaa tatcatggca
     1681 aaaaaagaat tacgcgcacc ttatgatgct attatcgcaa acaaatttat acaagtgggc
     1741 gaaggagtag gaggagtagc tcaaccttta atagaaattt tttcctatcc acaaagcaaa
     1801 ctgattttaa gttttgatga aaaatataaa gataaagtta gattaggcga tgatttcttt
     1861 tataaaatcg atcaaaatgg tacagaattg aaaggaaaaa tcagccttat ttatccaagt
     1921 atagaagtaa aaacaagaaa aatttatgct gaagtgcaaa ccacaaatct aacaccaggg
     1981 ctttttggtg aaggtagaat catcactaaa gattaaaaat gtttaaacta gctataaacc
     2041 gacctattac cgtgctaatg tttttcttag ctcttatgat ttttgggcta atctctgctt
     2101 ttagcatgag tgtaaattta tttcctaatg tttccatacc tcttataaaa atcacaagca
     2161 agataaatgg ggatttaaat ttcgtagaat caaaagtcac taaagaaata gaaaatgctt
     2221 taagtgaaat cgatggagta aagaccataa cctcagctgc atatgataat tttagtgtaa
     2281 gtgtagtcga gtttaaactg ggtaaaaatc ttgaagtagc tgccaatgat gtgcgcgata
     2341 aaataggaac tttaagccta ccttctaagc ctgaaattga aaaaatcagt tcagattctg
     2401 gttctgctat ttcacttttt ctatattcta aagataaatt acaactcatg cgtgaaatca
     2461 atgacaaaat aaaacctttt ttgcaaagag ttgaaggagt aggtaaaatc gaagctaagg
     2521 ggtttttaga accccaaatt cgcatagaat taaaaccaaa cgaacttaga aaatacaatc
     2581 ttaacgccct tgatgtagca aatatcatca aaagtcaaaa ttttaaacaa gccctaggcg
     2641 aacttaacaa caatcaagat aactatatca tcaaaggcta ttttgaagcc acaaatttag
     2701 aagaacttag caatcttcgc ataaaaacag gagtattttt aagtgatatt gctaatattt
     2761 caagccttta tgaagatgaa aaacaaagtg ctttatacga aggtaaagaa ggggtgcttt
     2821 tagaactcgg aaaaatcaca aattataaca cccttgaaat gattaaaaat gtcaaaaatg
     2881 ccttgcctat tttagaaaaa caaattccaa aagatataag cattaatatg ctttatgata
     2941 aaagcttaaa tatccacaag cacctttctc aagtgatttt tgatatggtt ttggggattt
     3001 ttctaaccct tgttatcgtg tttttatttt taagaaattt aagtgcaact ctcattgctt
     3061 gcatagctat acctacttct atcatttcaa ctttttttat tatcgatctt ttaggctatg
     3121 atttaaaccg cttaactttt atagctttaa ccttaagcat aggaattttt atcgatgatg
     3181 ctatagtagt gattgaaaat attgctaaaa aactaaaaac ttatccgcct ttacaagctg
     3241 cttttttggg tatcaatgaa ataggtttta gcgttttaag cataagtata gttttacttt
     3301 gtgtttttat ccctatttct tatatgaact ctatatcagg gctttttttc aatgccttag
     3361 gcataagcgt tgcaagtggg atagttataa gctttttggt ttctgtattt ttaataccta
     3421 gtattggggc aagattttta aatccaaaag aaaacaagtt ttatgaaaaa acagaagctt
     3481 tttttgaaaa aatagagcaa aagtatgaaa atttactcta taaaatttta caaaataaag
     3541 taaaatttat cctagccact cttgttttta tagggctttc ttttgcttta gccactcgca
     3601 taggacttga ttttttacct atggaagatg atagcgaaat tcaagttttg cttgaaagca
     3661 aaaaggattt aagtttagaa gccatgaaag aaaaaagttt aaatttgctt gaaaaaatca
     3721 aaaatgatag caatgtcaaa tacgcttttt tacttgtagg ctatgatgat gccaaagatg
     3781 ctacaaaggc taaaatttat gttaaactta aaaatttaga cgaaagaaat ttaagacaaa
     3841 gtgccatagt aagtttatat cgtcaaaaat ttcaagatga aagtttaaaa atcaaaattt
     3901 tagaacttcc aaagatagag ggtgcaggca ttgatgatcc cgtgcaattt ttaatcttag
     3961 gagatgattt aaacactcta aaagaagctg cttctcaggc aaaagaaatt ttaggcacta
     4021 atgcacgcat tgtagatata agtgataatg ctaatgctac aaaggatgaa gtagccttac
     4081 acatcaacaa agaaaaagcc aaacttttag atgtcaatcc tcaatatatc gctggggttt
     4141 tagggtattc tttctcgcaa cttagcgtag gaagcatgga tagaggcaat tcaaaagatg
     4201 atattatcct aagttttgct ccagaattta aaaaaaacat agaagcttta aagcgcatta
     4261 gcattaaaaa caaccaaggt ataaatttag aactttcaag cgtggtggat tttatataca
     4321 gtaaagattt aaaaactatc aatcgttaca ataaaaaccg ctctgtgaaa atcacagctg
     4381 gagtgaatga tctttcctta ggagcggtgc aaaaactttt actagataat atggataaaa
     4441 ttttaaataa caatccaagt cttagctatg ctttttcagg ctttatcaat cttttaggtg
     4501 aaaccgtgca aggttttgct atggcagtag cacttgcttt tgttttaatt tatcttgttt
     4561 tagccgcact ttatgaaagt tttattctgc ctttaatcat catgataacc atgcctttag
     4621 cctttggcgg agcttctata gggcttttta tcacagggca taatttttca ctttttgtac
     4681 ttattgccat catcttactt tttggtatgg tggggaaaaa tgctatttta ctcgtagatg
     4741 tagctaataa aaaatgccat gaaggtttag atcccgataa agctctttta atcgctggaa
     4801 aatcacgctt aagggctata ttgatgacaa cttttgctat gatttttgct atgctcccac
     4861 ttgctctttc aaggggtgcg ggctatgaag ctaattctcc tatggcaata gccattatct
     4921 ttggacttat aagttcgact ttgcttacct tactcgtagt acctgcactt tttaaatttt
     4981 gttttaaact agatagcaaa ttaagaaaaa tttatgagag agaaaaatta aattaaccaa
     5041 aatgattaat ttaatttttt taagtattat tcttataaag tgcttttaag ttatcatagg
     5101 cgatttgtat tttttcaaac tgttctcttg cgtaagcttt ttctattgca ctttttcctt
     5161 gatgaaaatc aggatgataa agttttacca aaatcaaata tttttgtctg atttcactaa
     5221 gatcattttg cggagtgcat tctaaagtat taaaataatt actaaaaagc ttagctaaag
     5281 cattaaattt ccatttcata ttttctttat tgtgaatatt ttggcgaaat tttttatact
     5341 cttcgcggtc aacttcaaaa ttcacgcaat attttaaatg ctcgctctca tctgcaaaag
     5401 cttcaaaaag ttcaagggta ttctcgtttt tatattctaa aattagaata tttgtcatt
//
LOCUS       DBBXPZ010000101         5448 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.103, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000101 DBBXPZ010000000
VERSION     DBBXPZ010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5448)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5448)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5448
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.103"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..752)
                     /locus_tag="ACJFD7_001599"
     CDS             complement(<1..752)
                     /locus_tag="ACJFD7_001599"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HGG0860377.1"
                     /translation="MRINKFISHNTRYSRREADELIKQGLVKINNKIALLSDEVKFDD
                     KVFVKGKRVQKRTQFSVIIYHKQKGEIVSKKDDRGRKTIYDTLPRQFSTWLSVGRLDY
                     ASEGLLLLTDSPVIADALMHSDLEREYYLKVKGTVSKQVIEAMQNGLEIKNEKKGAHA
                     KTKITSMSFAPFIDFEIFGSSGGYTKLRVVINEGKNRELRRFFGHFDLEVMDLKRVAF
                     GALDLGMLKAGKHRYLENGEYEKLRDFLKFNE"
     gene            complement(788..2782)
                     /locus_tag="ACJFD7_001600"
     CDS             complement(788..2782)
                     /locus_tag="ACJFD7_001600"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HGG0860378.1"
                     /translation="MNMDENKEINKNEQNPNSNSKNNKRYKYKNRRKKLADSLQNEND
                     TPKIDQNSNKENSENSENKTEKKKKKNRNLPSKLTGNEDWQIALAECIEANRVSHENR
                     LHPLKYNNSSEHKIRITPLGGLGEIGGNISVFETNKDAIIVDIGMSFPDGTMHGVDII
                     IPDFDYVRKIKDKIRGIVITHAHEDHIGAVPYFFKEFQFPIYATPLALGMISNKFEEH
                     GLKAERKWFRPVEKRRVYEIGEFDIEWIHITHSIIDASALAIKTKAGTIIHTGDFKID
                     QTPIDGYPTDLGRLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGPTFDQIFARTKGR
                     VIMSTFSSNIHRVYQAITYGLKYGRKVCVIGRSMERNLYTTMELGYIKLDRKIFIDAD
                     EVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPTDQVIISAKAIPGNEASV
                     SAVLDYLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLTKPKFFLPVHGEYNHITKH
                     KETAMKCGIPERNIYLMSDGDQVELCQKYVKRIKTVKTGKVFVDNQINKQIADDVVID
                     RQKLADSGIVVIIAQIDKATKTLINKPRVFSYGLVADKHDHAFSKDMAEVLGQFFINV
                     KDEVLNDPRFLENQIRQVLRKHIFRKIKKYPTIVPTIFVM"
     gene            complement(2751..3551)
                     /gene="rsmA"
                     /locus_tag="ACJFD7_001601"
     CDS             complement(2751..3551)
                     /gene="rsmA"
                     /locus_tag="ACJFD7_001601"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HGG0860379.1"
                     /translation="MVKAKKQYGQNFLIDKSVLAKIIQAIPKEMNNIIEIGPGLGDLT
                     QELLKISQVKAYEIDNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLV
                     ANLPYYVASHIILKALEDKNCLGLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICER
                     KILFDVDPQCFNPPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNL
                     KTYKAKVLEVLSTLGLKENIRPHEICVDLYLKIYDKLKDEYGRKQRDK"
     gene            3631..4167
                     /locus_tag="ACJFD7_001602"
     CDS             3631..4167
                     /locus_tag="ACJFD7_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HGG0860380.1"
                     /translation="MIVCAGGNENFSFAKAIGIGLVESAFHLSQLYFKEKPSKLIFIG
                     TCGLYDKGEILEIYRSSHAFNVEFSKISHAFYTPAKYEICLEKENVSRETIKINSSNY
                     ICQNSKAAKEFSKLGFFAENMEAFSVLSVAKNLNIDAECILCATNFCNENAHEDFIKN
                     HQKAKEKLEEYLKKYHYI"
     gene            4191..5261
                     /gene="rlmN"
                     /locus_tag="ACJFD7_001603"
     CDS             4191..5261
                     /gene="rlmN"
                     /locus_tag="ACJFD7_001603"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016433 - rRNA (adenine) methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0030488 - tRNA methylation [Evidence IEA];
                     GO_process: GO:0070475 - rRNA base methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HGG0860381.1"
                     /translation="MKELVNILDFLPEELGEKIKPMFRVKQIYQWIYQKYANNFSDMS
                     NLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPMKEEKIDA
                     EGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPY
                     ERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQM
                     NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGI
                     NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTI
                     RESKGLDISAACGQLKERAKEQ"
     gene            5258..5356
                     /locus_tag="ACJFD7_001604"
     CDS             5258..5356
                     /locus_tag="ACJFD7_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860382.1"
                     /translation="MTMLDIFEIIFITTVVIIGFGGIVFVVTKEKK"
     gene            complement(5370..5446)
                     /locus_tag="ACJFD7_001605"
     tRNA            complement(5370..5446)
                     /locus_tag="ACJFD7_001605"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5410..5412),aa:Met,seq:cat)
BASE COUNT         1705 a          888 c          885 g         1970 t
ORIGIN      
        1 atttcattaa attttaaaaa atctcttaat ttttcatatt cgccattttc taaataacga
       61 tgttttcccg ccttcaacat accaagatct aaagccccaa aagcaacacg cttaagatcc
      121 atgacttcaa gatcaaaatg tccaaaaaag cgtctaagct ctctattttt accttcattt
      181 ataaccactc taagcttagt atagcctcca cttgatccaa aaatttcaaa gtctataaaa
      241 ggagcaaaac tcatagaggt aattttagtt tttgcatgtg cgcctttttt ttcattttta
      301 atctcaagtc cattttgcat ggcttcgatg acttgtttgc tcaccgtgcc tttaacttta
      361 aggtagtatt ctctttctaa atcgctatgc attaaagcat cggcaatcac aggagaatct
      421 gtaagcaaaa gtaagccttc acttgcataa tccagcctac ctacgctaag ccaagtacta
      481 aattgtcttg gcaaggtatc atatatagtt tttcttccac gatcgtcttt tttactgaca
      541 atttcacctt tttgtttatg gtagattatc acgctaaatt gcgttctttt ttgtactctt
      601 ttacctttaa caaaaacttt atcatcaaat ttaacttcat cgcttaaaag ggcaattttg
      661 ttgtttattt ttactaagcc ttgtttgata agttcatcgg cttcacggcg tgaatagcgg
      721 gtgttatggg atataaattt attaattctc atttgatctt ccttaaaaag ggcgtttttg
      781 ccctttttta cattacaaaa atagttggaa ctatggttgg gtatttttta atctttctaa
      841 agatgtgttt tcttaaaact tggcggattt gattttctaa aaatcttgga tcattgagta
      901 cttcatcttt aacattgatg aaaaattgtc ctaaaacttc agccatatct ttgctaaaag
      961 catgatcgtg tttgtcagct actagcccat agctaaatac tcttggtttg ttgatcagtg
     1021 tttttgtagc tttgtcaatt tgtgcgataa taactactat accactatct gcaagttttt
     1081 gacgatctat aactacatca tcggcgattt gtttattgat ttgattatct acaaaaactt
     1141 tacctgtttt tacggttttt atgcgtttga catatttttg gcaaagttct acttgatcgc
     1201 catcactcat aagataaata tttctttcag ggataccgca cttcatcgct gtttctttgt
     1261 gtttggtgat gtgattgtat tctccatgaa ctggtaggaa aaatttaggc ttagtaaggg
     1321 ttagcataag cttttgctct tctatactag cgtgtccgct tacatgaatt tcactaaatt
     1381 cttgatacgc tactttagct cctgctttta aaagatagtc aagcaccgca gaaacacttg
     1441 cttcatttcc tggtatggct ttagctgaaa taatcacttg atctgtaggt ttgattttta
     1501 taaatttatg ctcatcagtt gccattctat aaagcgcact catggtttcg ccttgacttc
     1561 ctgtagttac gataagcact tcattgtctt tatatttgct tacttcatca gcatcgatga
     1621 aaatttttct atcaagtttg atgtagccta attccatagt ggtataaaga tttctttcca
     1681 tagaacgacc gatcacacaa acttttctac cgtattttaa accataagtg atagcttgat
     1741 aaacgcggtg gatattagaa ctaaaagtac tcatgatcac cctgcctttg gtacgtgcaa
     1801 agatttgatc aaaagttggc cctacggagc tttcactttt tgtataacct tctttgtacg
     1861 aatttgtact atcgcttaaa agacataaaa ccccttcttc tccataatgt gccaaacgtc
     1921 ctaagtctgt tggatagcca tcgattggag tttgatcaat tttaaaatca cctgtgtgga
     1981 taatcgttcc tgcttttgtt ttgatcgcaa gtgctgaagc atcaatgata gaatgcgtga
     2041 tgtggatcca ctctatatca aattcgccta tctcataaac acggcgtttt tctacagggc
     2101 gaaaccattt gcgttctgct tttaagccat gttcttcaaa tttgtttgaa atcattccta
     2161 aagccaaagg tgtagcgtag ataggaaatt ggaattcttt aaagaaataa ggcactgcac
     2221 cgatatgatc ttcgtgtgca tgagtgatca ctataccacg aattttatct ttaatttttc
     2281 ttacatagtc aaaatcaggg atgataatat ctaccccatg catagttcca tcaggaaaac
     2341 tcatacctat atctactata attgcatctt tattggtttc aaaaacactg atatttccac
     2401 caatttctcc taaacctcct aaaggagtga tgcggatttt atgctcgcta gaattattat
     2461 attttaaagg gtgtaagcgg ttttcatgtg aaacacggtt agcttctatg cattctgcaa
     2521 gagcgatttg ccaatcttca ttacctgtga gttttgaagg aagattgcga tttttcttct
     2581 tttttttctc agttttattt tctgagtttt cagaattttc cttgttggaa ttttgatcaa
     2641 tttttggagt atcattttca ttttgcaaag aatcagctaa tttttttcta cgatttttat
     2701 atttatagcg tttattgttt tttgaatttg agttcggatt ttgttcgttt ttatttatct
     2761 ctttgttttc gtccatattc atcctttaat ttgtcataaa ttttaaggta taaatcaacg
     2821 caaatttcat gtggtctgat gttttctttt aagccaagag tgcttaaaac ttctaaaact
     2881 tttgctttat atgtttttaa atttcctaag agttgttttc taggagcttt aaaacaatct
     2941 tttagaaaat ttttgaaatt ttctatttcg caaagttcat caaaatcctt agttttaatc
     3001 aaactcatca ccgctgacat aacttttggt ggaggattaa aacattgtgg atcaacatca
     3061 aaaagtattt ttctttcgca aatcattgca cttaaaacac ctaaggaaga aaactcacta
     3121 tttccttctt tagcgcagaa tttttcagcc atttcccttt gtaccattac aataagccct
     3181 agacaatttt tatcttctaa agcttttaat ataatgtgac ttgcaacata ataaggcaaa
     3241 tttgcaacca aaaaatatgg tttttcatca agactaggat taaaagcttc gcttgcgtct
     3301 tgatggatca agttaaattt tccacattca agttcttttt gaaatttctt ttttaaaata
     3361 ggtatgagat cattatcgat ttcataagct tttacttgag aaatttttaa aagttcttgc
     3421 gttaaatcac ctaagccagg cccaatctca atgatattgt tcatctcttt gggtatggct
     3481 tggatgattt ttgctaatac gcttttatcg attaaaaaat tttgtccgta ttgttttttt
     3541 gctttaacca taagaaataa ttttatctaa aaattcttaa ttaagtcttt ttaggtagaa
     3601 ttatttttgt aaaatttcat aaggatcaaa atgattgttt gtgcgggtgg aaatgaaaat
     3661 ttttcttttg caaaagccat aggcataggt ttggttgagt cagcttttca tttgagtcaa
     3721 ctttacttca aagaaaaacc atcaaaactt atatttatag gaacttgtgg gctttatgat
     3781 aagggagaga ttttagaaat ttatagaagt tcgcacgctt ttaatgtaga attttctaaa
     3841 atttcacatg cattttatac tcctgcaaaa tatgaaattt gcttagaaaa agaaaatgtt
     3901 tctcgtgaaa caataaaaat caattcttca aattatattt gtcaaaattc aaaagcagca
     3961 aaagaatttt caaaattagg tttttttgca gaaaatatgg aagccttttc tgttttgagc
     4021 gtagctaaaa atttaaatat tgatgcagag tgtattttgt gtgcaacaaa tttttgcaat
     4081 gaaaacgctc acgaagattt tataaaaaat catcaaaagg caaaagaaaa attagaagaa
     4141 tacttaaaaa aatatcatta tatttaaaaa ttcaaaaaag gaaaataatt ttgaaagagc
     4201 ttgttaatat tttagatttt ttacctgaag aattaggaga aaaaatcaaa ccgatgtttc
     4261 gcgtgaaaca aatttatcaa tggatttatc aaaaatacgc caataatttt tccgatatgt
     4321 caaatttacc aaaagatcta cgtttagaac ttgcgcaaaa ttttcatttc tctcctgtaa
     4381 aatgtgttaa aaatgagcaa agtaaagatg gaagtataaa atatcttttt gaactcgttg
     4441 atggtttaag gatagaaagt gtgcttttgc ctatgaaaga agaaaaaata gacgcagaag
     4501 gcaaaagaat ttctcatgcg agatatacta tctgtgtttc ttctcaagta ggttgtaaaa
     4561 gtggatgtag tttttgtctt actgccaagg gtggtttgaa aagaaattta agtgcaggtg
     4621 agatagtcgg acaaatttta tggatcaaaa aacaaaacaa tatcccttat gaacgccgtg
     4681 taaatatagt atatatgggt atgggcgagc ctttggataa tcttaaaaat gtttctaaag
     4741 cggtaaaaat tttagcgcaa aatgagggac ttgctataag tcctcgccgt caaaccatca
     4801 gtactagcgg tttggcaaaa caaatcaaag aattaggtca aatgaattta ggtgttttac
     4861 ttgctatatc attgcatgcg gttaatgatg agcttcgaac cgaacttatg cctatcaata
     4921 aagcttataa tatcgctgcg attatggatg cggtgcgtga atttcctata gatcaaagaa
     4981 aaagggtaat gtttgaatat cttttaattg atggtatcaa tgataagctt gaacacgcta
     5041 aagaattagt caagctttta aatggcatta aagctaaagt gaatttaata ctctttaatc
     5101 cacatgaagg aagtttatat aaacgcccta gtttagaaaa tgcgattaaa ttccaagatt
     5161 tactaagtaa taaaggtgta acttgtacta taagagaaag taaaggactt gatatctcag
     5221 ctgcttgtgg acagcttaaa gaaagggcaa aagaacaatg acaatgctag atattttcga
     5281 aatcattttt ataacaactg ttgtaattat aggttttggt ggaattgttt ttgtagtaac
     5341 aaaagaaaaa aaataattat tacacttaat ggtgtcaagg gggagacttg aactcccgac
     5401 ctccggctta tgagaccagc gctctaacca gctgagctac cctgacta
//
LOCUS       DBBXPZ010000102         4991 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.104, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000102 DBBXPZ010000000
VERSION     DBBXPZ010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4991)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4991)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4991
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.104"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..502)
                     /locus_tag="ACJFD7_001606"
     CDS             complement(<1..502)
                     /locus_tag="ACJFD7_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 family protein"
                     /protein_id="HGG0860383.1"
                     /translation="MHFTIFHIIVFIILLICFALICILIFLKVKQKEMALISYTIATI
                     FTALLIYSIFLTINQFTTQADLSKLTYTRDLRHESVIVNGKVQNLTKFEIKKCYLILS
                     ILNQQQVGGEIFNDKNIRNAKMQNTSVSYTIEIIDTLPGNTYKEFRASVPFPPTFNNP
                     EFYHTLK"
     gene            complement(502..1032)
                     /locus_tag="ACJFD7_001607"
     CDS             complement(502..1032)
                     /locus_tag="ACJFD7_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 domain-containing protein"
                     /protein_id="HGG0860384.1"
                     /translation="MEKLREIVLFYTTHLYLVDYMLILLVFFLFTCVLLLCVFLRHRP
                     IAALFIIAFDIIICFLVYIYGYKLIDNEVRTRKIAITDQKMIQSSNDLIVDFNITNNS
                     KNNFKECKITAKIFADKIPNDNIIEEYKKKFIPFRQKSREIKDLKKNATQFQRIAFEN
                     FNYENNYTIRLVSECF"
     gene            complement(1045..2133)
                     /locus_tag="ACJFD7_001608"
     CDS             complement(1045..2133)
                     /locus_tag="ACJFD7_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HGG0860385.1"
                     /translation="MPADLNDYFNKKNGNSNNNGNNNRQNFNFKAPEFNFKGFGKFSP
                     FVYGVIIIILFLIVAKPFMVINSGEMGIKSTTGKYDPNPLEPGLHFFLPFVQKITIID
                     TRVRQINYASIEGSNENLSSGSGVINKNSISVLDSRGLPVSIDVTVQYRLNPLQVPQT
                     IATWSLNWENKIIDPVVRDVVRSVVGKYTAEELPTNRNTIATQIEEGIRKTIEAQPNE
                     PVELRAVQLREIILPSKVKEQIERVQIAKQEAERTKYEVERANQEALKKAALAEGEAN
                     ATIISAKGKAMAVKIEADAQAYSNKEIANSLNTPLLNLKQIETQKEFNEALKVNQDAK
                     IFLTPGGAVPNIWVDTKDAKKQSSANIN"
     gene            complement(2145..3059)
                     /gene="ilvE"
                     /locus_tag="ACJFD7_001609"
     CDS             complement(2145..3059)
                     /gene="ilvE"
                     /locus_tag="ACJFD7_001609"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HGG0860386.1"
                     /translation="MISADKIWMDGKLVDFKDATLHFLTHSLHYGNAVFEGTRAYKTD
                     KGLAIFRLEDHTKRLLESAKITLLNCPFSQKELENAQIELLKANNFKSNVYIRPLIFL
                     GDGVMGLYHIKAPVRVGIAAWEWGAYLGEEGLEKGIKVKISSFARNSVKSCMGKAKAS
                     ANYLNSQIAKFEAIEAGYEEALMLDEEGFIAEGTGECFFIVKDGVLITPPNDFSLKSI
                     TQNTVLKIAHDLGIPVLRQRISRDEVYTADEAFFTGTAAEITPINNIDARIIGNGLRG
                     PVTKKLQDAYFDVVYGRNEKYASMLTYI"
     gene            3236..3442
                     /locus_tag="ACJFD7_001610"
     CDS             3236..3442
                     /locus_tag="ACJFD7_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HGG0860387.1"
                     /translation="MPLVNIKLAKPSLSKEQKAELIADITKLLSTKYNKSKERVVVVL
                     EDVENYDIGFGGESVEAIKAKAIK"
     gene            3439..3894
                     /gene="bcp"
                     /locus_tag="ACJFD7_001611"
     CDS             3439..3894
                     /gene="bcp"
                     /locus_tag="ACJFD7_001611"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HGG0860388.1"
                     /translation="MSLNIGDKAPQFELLNQDGVKIALKDFIGKKVILYFYPKDNTPG
                     CTTEACDFSLNYDKFGGKNAVIIGISPDSVASHEKFISKFDLKHILLSDSEKEVAKAY
                     GAWGLKKNYGKEYEGLIRSTFVIDEIGRIAQIYSNVRVKDHALKVLESL"
     gene            3894..4985
                     /locus_tag="ACJFD7_001612"
     CDS             3894..4985
                     /locus_tag="ACJFD7_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HGG0860389.1"
                     /translation="MLVHICCSVDSHYFIEELRKTYPDEKIIGYFYDPNIHPLSEYEL
                     RFLDVKRSCDKLGIKLYKGEYEYEKWLNAVRGYEDEPEKGARCEICFDVRMGSSVKFA
                     AKIGEKKLTTTLLISPKKDLEQLKNALQKECEPYGVEFLAPDFRKNGGTQRQFALAKK
                     EMLYHQNYCGCIYGLKKQKQDKNFIDELMSPVNKQILPASIEARIALYKKVVLWEKKG
                     IKFEILREKFLNYRLLSALIKLDKKPVKSHILFYSHFKNAYTRFSLDEENLKQNLKEG
                     FYRSTKDEIVLVEFWRFNAFFKNKWKNFEDFLKKPLSVQAEIKWRNKLFGTYNLSPII
                     ILENILPSRYEVIAKSEIYHDNQEVLVKI"
BASE COUNT         1692 a          677 c          825 g         1797 t
ORIGIN      
        1 attttaaggt gtgataaaat tcaggattat taaaagttgg aggaaaagga acgctagctc
       61 taaattcttt ataggtatta cccgggagtg tgtctatgat ttctatagta taagaaacac
      121 ttgtattttg cattttagcg ttacggatat ttttatcatt gaaaatttca cctcctactt
      181 gttgttggtt taatatgcta agtatcaaat agcatttttt gatttcaaat ttagtaagat
      241 tttgaacttt tccatttact ataacgcttt catgtcttag atctcttgta taggttagtt
      301 tgctaagatc ggcttgagtg gtgaattgat tgattgtcag aaaaatagaa tatatcaaaa
      361 gtgcggtaaa aatagtagct atggtataag aaatcaaagc catttctttt tgtttgactt
      421 ttagaaagat taaaatacaa atcaaggcaa agcaaataag taaaatgata aaaactataa
      481 tatgaaaaat tgtaaaatgc attaaaaaca ctccgaaact aagcgtatgg tatagttatt
      541 ttcatagtta aaattttcaa aagcaattct ttgaaattgg gttgcgtttt tctttagatc
      601 tttaatttct ctactttttt gtctaaaagg gataaatttc tttttatatt cttctatgat
      661 attatcatta ggtattttat ctgcaaaaat tttagctgta attttacatt ctttaaaatt
      721 attttttgaa ttatttgtaa tgttaaaatc aacaattaaa tcatttgagc tttgtatcat
      781 tttttgatct gtaatagcga tttttcgagt tcttacttca ttgtctatta gtttataccc
      841 atagatataa actaaaaaac aaataataat atcaaatgca ataataaaaa gtgctgctat
      901 aggtctatgg cgtaaaaata cgcaaagaag taaaacacaa gtgaagagaa aaaaaactaa
      961 taaaatcagc atataatcta ctaaatataa atgagtagtg taaaaaagca caatttctct
     1021 tagtttctcc acttgcgtat ccttttagtt tatgttggca gaactttgct ttttagcatc
     1081 tttggtatca acccaaatgt ttggcactgc tccacctgga gttaagaaaa ttttagcatc
     1141 ttgattgact tttaaggctt cattaaattc tttttgagtt tcaatttgtt ttaaatttaa
     1201 taaaggggtg tttaggctgt ttgcgatttc tttattagaa taagcttgcg catctgcttc
     1261 tattttaaca gccatagctt tacctttggc gctgattatg gttgcgtttg cttccccttc
     1321 agctaaggca gcttttttta aggcttcttg attagctctt tctacttcat atttggttct
     1381 ttcagcttct tgttttgcaa tttgtacgcg ttcgatttgt tcttttactt ttgaaggtaa
     1441 aataatttct ctaagttgta cagcgcgaag ttctacaggt tcatttggtt gagcttctat
     1501 ggtttttctt ataccttctt ctatttgagt ggctattgta ttacgattag taggaagttc
     1561 ttcggctgta tattttccta caacacttcg cactacatca cgaacaactg gatcgataat
     1621 tttattttcc caatttaagc tccaagtagc tatagtttga ggaacttgca gaggatttaa
     1681 gcggtattgt actgtaacat caatagatac aggcaatcca cgagagtcaa gtacagaaat
     1741 gctattttta ttaataacac ctgaacctga agataaattt tcattacttc cctctataga
     1801 agcatagttg atttgtctta ctctagtatc gattatggtt attttttgta caaaaggtaa
     1861 gaaaaagtga agtcctggtt ctaatggatt tgggtcatat ttacctgttg ttgatttaat
     1921 ccccatttcc ccagaattta tcaccataaa aggttttgca acgattaaaa ataagataat
     1981 aataatcacc ccataaacaa atggagagaa tttcccaaaa cctttaaaat taaattctgg
     2041 tgctttgaaa ttgaaatttt gacggttgtt gtttccgtta ttgttagaat tcccattttt
     2101 tttattgaaa taatcattta aatcagctgg catttatttc ctttttaaat ataagttagc
     2161 atagatgcgt atttttcatt gcgtccataa actacatcaa aataagcatc ttgaagtttt
     2221 ttggttacag gtcctcttaa accatttcct attattcttg catcaatatt gttaataggt
     2281 gtgatttcag cggctgttcc ggtaaaaaat gcttcatcag cagtataaac ttcatctctt
     2341 gaaattcttt ggcgaagcac agggatacca agatcatgag ctattttaag cactgtattt
     2401 tgagtaatgc tttttaaaga aaaatcattt ggaggtgtga ttaaaacccc gtcttttaca
     2461 ataaagaaac attctcctgt tccttctgcg ataaaacctt cttcatcaag cattaaagct
     2521 tcttcatagc ctgcttcaat agcttcaaat tttgcaattt gagagttaag gtaattcgcg
     2581 cttgctttag cttttcccat gcatgattta acactatttc ttgcaaaaga cgaaattttt
     2641 acttttatgc ctttttctaa accttcttct ccaaggtaag caccccattc ccaagccgca
     2701 attccaactc ttacaggagc ttttatatga taaagtccca taactccatc gcctaagaaa
     2761 atcaaagggc ggatatagac attgctttta aaattgtttg cttttaagag ttcaatttgt
     2821 gcattttcaa gctctttttg agaaaaagga caatttaaaa gagtaatttt tgcagactct
     2881 aaaagtcttt tggtgtgatc ttcaagtctg aaaattgcca agcctttatc tgttttatag
     2941 gctctagttc cttcaaaaac agcattgcca taatgcaaag aatgggttaa aaagtgcaaa
     3001 gttgcatctt taaaatcaac taattttcca tccatccaaa ttttatctgc tgagatcatt
     3061 tttttacctt ttatagttgt ttatttctta aaaaatatta ttttaagaat aaatcgggat
     3121 tttatcaaaa atatactaac aataagcttt tattaaatta aggttttttg ttaaaaaaaa
     3181 tattaggtat tttttgaaat aattatgaaa aattatcgtt aaaaaaggag aaattatgcc
     3241 attagtaaat attaaattag caaagccgtc tttaagcaag gaacaaaaag cggagcttat
     3301 agctgatatt accaaacttt taagcacgaa atataataaa agtaaagaaa gagttgtggt
     3361 ggttttagaa gatgtagaaa attatgacat aggctttggc ggagaaagcg ttgaagctat
     3421 caaagcaaag gcaattaaat gagtttaaac ataggagata aagcacctca gtttgagctt
     3481 ttaaatcaag atggggtaaa aatagcatta aaagatttta ttggcaaaaa ggtgattttg
     3541 tatttttatc caaaagataa tactccaggt tgcactacag aggcttgtga ttttagttta
     3601 aattatgata aatttggtgg taaaaatgca gtgattattg gtatcagtcc tgatagcgtg
     3661 gcaagtcatg aaaaatttat ctctaaattt gatttaaaac atattttact tagcgatagt
     3721 gaaaaagaag ttgctaaagc ttatggagct tgggggctta aaaaaaatta cggaaaagaa
     3781 tacgaaggtc ttattcgctc tacttttgtt attgatgaaa taggtaggat tgctcaaatt
     3841 tatagtaatg ttcgtgtaaa agatcatgct ttaaaagtgc ttgaaagtct ttaatgttgg
     3901 tgcatatttg ttgcagtgtg gatagtcatt attttattga agaacttaga aagacttatc
     3961 ctgatgaaaa aattatagga tacttttatg atccaaatat ccatccctta agcgaatacg
     4021 aactaagatt tttagatgta aaaagatctt gtgataaact tggtattaag ctttataaag
     4081 gtgagtatga gtatgaaaaa tggcttaatg ctgtgcgtgg ttatgaagat gagcctgaaa
     4141 agggtgcaag gtgtgaaatt tgctttgatg taagaatggg atctagtgtt aaatttgctg
     4201 ctaaaatagg agaaaaaaag cttactacta cgcttttaat cagccctaaa aaagatttag
     4261 aacagttaaa aaatgcttta caaaaagaat gtgagcctta tggagtagag tttttagctc
     4321 ctgattttcg taaaaatggc ggtactcaaa gacagtttgc tttagcaaaa aaggaaatgc
     4381 tttatcatca aaactattgc ggctgcattt atgggcttaa aaaacaaaaa caagataaga
     4441 attttattga tgaattaatg tctcctgtaa ataagcaaat tttacctgca agtatagaag
     4501 caagaatagc tctttataaa aaagtagttt tatgggaaaa aaaaggtata aaatttgaaa
     4561 ttttaagaga gaaattttta aattatcgtc ttttaagtgc tttgataaaa ttagataaaa
     4621 agcccgttaa atctcatatt ttattttatt cgcattttaa aaacgcttat acaagatttt
     4681 ctttggatga ggaaaattta aaacaaaatt taaaagaagg cttttataga agtactaaag
     4741 atgaaatagt tttagtggaa ttttggcgtt ttaatgcatt ttttaaaaac aaatggaaaa
     4801 attttgaaga ttttttaaaa aaacctttaa gtgttcaagc agaaattaaa tggcgtaata
     4861 aattgtttgg aacttataat cttagtccta ttatcatcct cgaaaatatt ttaccttcaa
     4921 gatatgaagt gatagcaaaa agtgaaattt atcatgataa tcaagaggtg cttgtaaaaa
     4981 tttaagaaat t
//
LOCUS       DBBXPZ010000103         4974 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.105, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000103 DBBXPZ010000000
VERSION     DBBXPZ010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4974)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4974)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4974
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.105"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            13..1149
                     /gene="pseA"
                     /locus_tag="ACJFD7_001613"
     CDS             13..1149
                     /gene="pseA"
                     /locus_tag="ACJFD7_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid biosynthesis protein PseA"
                     /protein_id="HGG0860390.1"
                     /translation="MKFCKKCVMPDTKPDLHFDEEGVCDACRSQEAKNQNINWQEREK
                     EFFELIKKYKKHPVYDCVIGVSGGKDSTFQVVKMLELGLNPLCVCFEPSVPTKIGRKN
                     LDNLNHLGVDLIHIKRDPKVYQKLAREAFVRTGDNEWQNHLGIFTSVPRIAVNFGVPL
                     IIWGESPQIEYGGPASSKNKNILGREWLEEFGGLLGNRASDMLGVNGITEKDLFLYTY
                     PSDEELQRVGVTGLFLGYYFKWDYKKILEISKKYGFLTLDHPVETTYENFENLDCYSN
                     HVHDYLKYCKYGFGRATDNACLDIRLGYISREEGVRLAQKYDGKPPKKAIKKYLEFSG
                     FSEEEFQKIVDSFTNKKIFKRDENGKFLRDYDGSLVRKDECVLK"
     gene            1146..1751
                     /gene="hisH"
                     /locus_tag="ACJFD7_001614"
     CDS             1146..1751
                     /gene="hisH"
                     /locus_tag="ACJFD7_001614"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HGG0860391.1"
                     /translation="MIALIDYKAGNLNSVAKAFEKIGATNFIAKNPKDLQKADKLLLP
                     GVGSFKEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFI
                     EGEVVKFEEDLNLKIPHMGWNELEILKQVPLYQGIDNKSDFYFVHSFYVKCKDEFVSA
                     KAQYGHKFVASLQKDHIFATQFHPEKSQNLGLKLLENFARL"
     gene            1752..2498
                     /gene="wbuZ"
                     /locus_tag="ACJFD7_001615"
     CDS             1752..2498
                     /gene="wbuZ"
                     /locus_tag="ACJFD7_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016833 - oxo-acid-lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl amidation-associated protein WbuZ"
                     /protein_id="HGG0860392.1"
                     /translation="MLKTRIIPCVLLKNGQLVKSIEFKDFRTIGHLTSTMRIYNARNV
                     DELIILDIDASKSGEIDFESIEDLAKECFMPLTIGGGIKTLEDIQKILNLGADKISIN
                     SKALEDMDFISKAANRFGSQCIVCSIDVKRKGGQFCVYDRGNLLEKSPLELALEYEKK
                     GAGELLLTSVDFEGRAKGYDLELLKIFQNKLKIPLIINGGLSNPSDGVEALNLGADAL
                     AGAYIFHFSKYTPKDVKEELARQGFAVRLL"
     gene            complement(2463..2936)
                     /gene="pseH"
                     /locus_tag="ACJFD7_001616"
     CDS             complement(2463..2936)
                     /gene="pseH"
                     /locus_tag="ACJFD7_001616"
                     /EC_number="2.3.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HGG0860393.1"
                     /translation="MIKLKNFTELNSQEIELIFKWRNHPDINQFMKTKYIDFEEHLRF
                     LKKLHQDSSKKYFLVFQDEQIIGVIDFVNITTKSCEFGLYAKPNLKGVGQILMNEIIK
                     YAFENLKVNTLKAYVFKDNHKALKLYQQNHFTIYDEDKDFYHICLKQSDCKALPS"
     gene            complement(2933..3757)
                     /gene="pseG"
                     /locus_tag="ACJFD7_001617"
     CDS             complement(2933..3757)
                     /gene="pseG"
                     /locus_tag="ACJFD7_001617"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HGG0860394.1"
                     /translation="MKVLFRSDSSSQIGFGHIKRDLVLAKQYSDVSFACLPLEGSLID
                     EIPYPVYELDSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDE
                     IKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIREEFYQEAKENREKKYDF
                     FICMGGTDIKNLSLQIASELPKTKIISIATSSSNPNLKKLQKFAKLHNNIRLFIDHEN
                     IAKLMNESNKLIISASSLVNEALLLKANFKAICYVKNQESTATWLAKKGYEVEYKY"
     gene            complement(3741..4439)
                     /gene="pseF"
                     /locus_tag="ACJFD7_001618"
     CDS             complement(3741..4439)
                     /gene="pseF"
                     /locus_tag="ACJFD7_001618"
                     /EC_number="2.7.7.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070567 - cytidylyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid cytidylyltransferase"
                     /protein_id="HGG0860395.1"
                     /translation="MKNLCIIPARGGSKRIPRKNIIDFLGKPLISYSIENALNSGIFD
                     EVVLSSDDEEIIEVALKYGAKAPFVRDKNLSDDYASSTAVVQNAIEILQSQNQIYDHV
                     CCLYATAPLLNKDILKQAYEKFIQNQSKFLFAATEFEYPIQRAFYLNENNQVYMFDEK
                     HYKSRSQDLTKAYHDAGAFYFGTSKAWLEEDFIFKPHSSVFVLPRNLVCDIDTIQDLE
                     FAKILYKVNHESAF"
     gene            4518..>4974
                     /locus_tag="ACJFD7_001619"
     CDS             4518..>4974
                     /locus_tag="ACJFD7_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HGG0860396.1"
                     /translation="MLINQTFEIDSCDDVELNIKRTSKLEYRISYDDEKDIKAIVFVI
                     GGYGANANISFLDFDREYIAKNFDVVVVHVFYHCFCARISNNKKYSASISFMEEDLLS
                     LSKILLDFGINPQNLDCKNSTKYYELLIQHIITLKSQGKLAQNYQAKFTS"
BASE COUNT         1694 a          657 c          876 g         1747 t
ORIGIN      
        1 taaaggaaat ttatgaaatt ttgtaaaaaa tgtgtgatgc cagatactaa gcctgattta
       61 cattttgatg aagaaggtgt ttgtgatgct tgtcgttctc aagaagctaa aaatcaaaat
      121 attaattggc aagaaagaga aaaagaattt tttgagctta taaaaaaata caaaaaacat
      181 cctgtttatg attgtgttat cggagtaagt ggcggaaaag attctacttt tcaagtggtt
      241 aaaatgctcg aacttggact taatcctttg tgtgtgtgtt ttgagcctag cgtacctacg
      301 aaaatagggc gcaaaaattt agacaattta aatcatcttg gcgtggattt gatccatatc
      361 aagcgtgatc caaaagttta tcaaaaactt gcccgtgaag cttttgtaag aacaggggat
      421 aatgagtggc aaaaccattt gggaattttt acttctgttc cacgcatagc ggtaaatttt
      481 ggagtgcctt tgatcatctg gggagaaagt ccgcagatag agtatggcgg tcctgcgagt
      541 agtaaaaata aaaatatttt aggcagagag tggcttgaag aatttggcgg gcttttagga
      601 aatcgcgctt ctgatatgct tggggtaaat ggtatcactg aaaaagattt gtttttatat
      661 acttatccaa gcgatgaaga acttcaaaga gtaggggtta cggggctatt tttagggtat
      721 tattttaaat gggattataa aaaaattctt gaaatttcta aaaaatatgg ttttttaact
      781 ctagatcatc ctgttgagac tacttatgaa aattttgaaa atttagattg ttattctaat
      841 catgtgcatg attatttaaa atactgcaaa tacggctttg gtagagcaac agataatgct
      901 tgtttggata ttcgtttagg ttatatcagc cgtgaagaag gggtgcgttt ggcacaaaaa
      961 tacgatggca agccccctaa aaaggctatt aaaaaatacc ttgaattcag tggttttagc
     1021 gaggaagaat ttcaaaaaat tgtagattct tttactaata aaaaaatctt taaacgtgat
     1081 gaaaatggca aatttttaag agattatgat ggttctttgg taagaaaaga cgagtgtgtt
     1141 ttaaaatgat agcgctcatt gattacaagg cgggaaattt aaactccgtt gctaaggctt
     1201 ttgaaaaaat aggagctaca aatttcatag ctaaaaatcc aaaagatttg caaaaagcag
     1261 ataaattgct tttacctgga gtgggatctt ttaaagaagc gatgaaaaat ttaaaagaac
     1321 ttggttttat agaagcttta aaagagcaag ttttagtaca aaaaaaacct attttaggca
     1381 tttgtttagg aatgcagctt tttttagaaa ggggctatga aggtggagtt tgcgaaggac
     1441 ttggttttat agaaggtgaa gtagtcaaat ttgaagagga tttaaattta aaaatcccac
     1501 atatgggttg gaatgagctt gaaattttaa aacaagttcc tttgtatcaa ggcatagata
     1561 ataagagtga tttttatttt gtgcattctt tttatgtgaa atgcaaagat gagtttgtaa
     1621 gtgctaaagc acaatacgga cataaatttg ttgcatcttt acaaaaagat catatttttg
     1681 ctacacaatt tcaccccgaa aaaagtcaaa atttaggttt aaaactttta gaaaattttg
     1741 caaggcttta aatgttaaaa actagaatta tcccttgtgt tttgttaaaa aacggacaac
     1801 ttgttaaaag tatagaattt aaagattttc gcactatagg gcatttaact tcaacaatga
     1861 gaatttataa tgcacgcaat gttgatgagc ttattatctt agatatagat gcttcaaaaa
     1921 gtggagaaat agattttgaa agtatagaag atcttgctaa agagtgtttt atgcctttaa
     1981 ctataggtgg cgggataaaa acccttgaag atatacaaaa gattttaaat ttaggtgcgg
     2041 ataaaatttc tatcaattct aaggccttag aagatatgga ttttataagt aaagcggcta
     2101 atcgttttgg ttctcaatgt atagtttgtt ctatagatgt taaaagaaaa ggagggcaat
     2161 tttgtgttta tgacagggga aatttacttg aaaaaagtcc tttagaactt gctttagaat
     2221 atgaaaaaaa aggagctgga gagcttcttt taacttctgt ggattttgaa ggaagggcaa
     2281 agggttatga tttagaactt ttaaagatct ttcaaaataa acttaaaatt cctcttatta
     2341 tcaatggagg acttagcaat ccaagtgatg gagttgaggc tttaaattta ggtgctgatg
     2401 ctttagcggg tgcttatatt tttcattttt ctaagtatac ccctaaagat gtaaaagaag
     2461 aattagctag gcaaggcttt gcagtcagat tgctttaggc aaatatggta aaaatcttta
     2521 tcttcatcat aaatagtaaa atgattttgt tgatataatt ttaaagcttt gtgattgtct
     2581 ttgaaaacat aagctttaag agtatttact tttaagtttt caaaagcgta ttttataatt
     2641 tcattcatta aaatttgtcc tacgcctttt aaattaggtt ttgcgtaaag tccaaattcg
     2701 caagatttag ttgtgatatt gacaaaatca attacgccga taatctgttc atcttgaaaa
     2761 actaaaaaat attttttgct agaatcttga tgtaattttt ttaaaaatct taaatgttct
     2821 tcaaaatcaa tatattttgt tttcataaat tgattgatat cggggtgatt gcgccattta
     2881 aaaatcagct ctatttcttg agaattaagt tctgtgaaat ttttaagttt tatcaatact
     2941 tatactccac ttcataccct tttttagcaa gccaagttgc tgtagattct tgatttttaa
     3001 cataacaaat agctttgaaa tttgccttta aaagcaaggc ttcattgact aaagaacttg
     3061 cactaatgat gagtttattg ctttcattca tcaattttgc aatattttca tgatcgataa
     3121 ataatctaat attgttatgt aattttgcaa atttttgcaa ttttttaaga ttaggattag
     3181 aagagctggt tgcaatgctg atgatttttg ttttaggtaa ttcgctagca atttgtaaag
     3241 aaaggttttt tatatcagtt ccacccatgc aaatgaaaaa atcatatttt ttttctctat
     3301 tttctttggc ctcttgataa aattcttccc tgattaaagc ataagaaaaa ccacatctta
     3361 cttcgcattt aaaaggcact aaaccttcat aatcacttgc ttttgcatag gcattgacat
     3421 tgagtaaaat atcacaatga tgaggcttta tttcatcatc aaagcttaga attttcaccc
     3481 ctgtttcaag cttgatcagt ttttcatcat ctacgctgat gccatagtga tcaatgataa
     3541 gaagttcaaa tttttcttct ttgatgagat tgataagttc gtaaatgctt tcactatcaa
     3601 gctcataaac aggataagga atttcatcga tcaaagagcc ttctaaaggc aaacaagcaa
     3661 aacttacatc gctatattgt ttagctaaga ctagatcacg tttaatgtgt ccaaagccta
     3721 tttgactgga gctatcgctt ctaaaaagca ctttcatgat ttaccttata aagtattttt
     3781 gcaaattcca aatcttgtat ggtgtctata tcgcaaacta aatttcttgg caatacaaac
     3841 acgctagaat gaggtttaaa tataaaatct tcctcaagcc aagctttgct tgtaccaaaa
     3901 taaaaagctc ctgcatcatg ataagctttt gttagatctt gtgaacgact tttataatgt
     3961 ttttcatcaa acatataaac ttgattgttt tcatttagat aaaatgccct ttgtatagga
     4021 tactcaaact cagtagcagc aaataaaaac ttgctttgat tttgtataaa tttttcatag
     4081 gcttgtttta aaatgtcttt atttaacaaa ggagcagtag cataaaggca gcagacatga
     4141 tcataaattt gattttggct ttgtaaaatt tctatggcat tttgcactac agcagtgctt
     4201 gaagcataat catcgcttaa atttttatca cgcacaaaag gagcttttgc accgtatttt
     4261 aaggctactt ctatgatttc ttcatcatcg cttgaaagca ccacttcatc aaaaatacct
     4321 gaatttaaag cattttctat gctataagag attaaaggtt tacctagaaa atcaatgata
     4381 ttttttctag gaattctttt tgatccacca cgagcaggga ttatgcaaag atttttcata
     4441 gttaagcctt gtttttgtgt tttattttac taaaatttaa gtataattgt ctttaaaata
     4501 caataaaagg cttaaaattg cttataaacc aaacctttga aattgattct tgtgatgatg
     4561 tagaattaaa tataaaaaga actagcaaac ttgaataccg cattagctat gatgatgaaa
     4621 aagatatcaa agccatagtt tttgtcatag gaggttatgg agctaatgca aatatttctt
     4681 ttttagattt tgatagggaa tatattgcta aaaattttga tgttgtagtg gtacatgttt
     4741 tttatcattg tttttgtgca agaatatcaa ataataaaaa gtatagtgct tctattagct
     4801 tcatggagga ggatttgtta agtctatcta agattttgtt agattttggc attaatccac
     4861 agaatcttga ttgtaaaaat tctaccaagt attatgaatt gcttattcag catattatta
     4921 ctttaaaatc acaaggaaaa ttagcgcaaa attatcaagc gaaatttact tcaa
//
LOCUS       DBBXPZ010000104         4974 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.106, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000104 DBBXPZ010000000
VERSION     DBBXPZ010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4974)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4974)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4974
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.106"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            33..248
                     /locus_tag="ACJFD7_001620"
     CDS             33..248
                     /locus_tag="ACJFD7_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HGG0860397.1"
                     /translation="MDRKKIPLLVLCILIATVFWLVPTPVGLEDNSWHFLGLFIAVIM
                     AVILQVMPFIAIAIVALSGITTTQLKI"
     gene            471..806
                     /locus_tag="ACJFD7_001621"
     CDS             471..806
                     /locus_tag="ACJFD7_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HGG0860398.1"
                     /translation="MARGVIKTGLGEHLAYHFISILGKKTLGIAYSIAFCETILAPVT
                     PSNTARAGAIINPIVQVIARSFKSTPEDGTQNKIGTYLSLVNYQEPILFHQLCLLQLQ
                     LQILWWLIL"
     gene            860..1063
                     /locus_tag="ACJFD7_001622"
     CDS             860..1063
                     /locus_tag="ACJFD7_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HGG0860399.1"
                     /translation="MFLPGIAAMLLMPLMLYFLSPLEIKSTPNASTFAKDKLKELVKM
                     KNSEKIMLSVFISLLLLWAGALG"
     gene            1084..1617
                     /locus_tag="ACJFD7_001623"
                     /pseudo
     CDS             1084..1617
                     /locus_tag="ACJFD7_001623"
                     /inference="COORDINATES: protein motif:HMM:NF013132.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
     gene            complement(1645..2661)
                     /gene="mnmA"
                     /locus_tag="ACJFD7_001624"
     CDS             complement(1645..2661)
                     /gene="mnmA"
                     /locus_tag="ACJFD7_001624"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HGG0860400.1"
                     /translation="MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEEN
                     IKKVEKVANFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLL
                     EFAKSLGCEKLATGHYARLENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKK
                     EDVKKFASTIEVLKSFATQKESSEICFVEDTYVQVLDQFMDTKIPGEVLDSSGKVVGK
                     HEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFI
                     DAKELVCEVKIRYRSKSTPCKVEIYEDKSAKIILKDPVYGLASGQMAVFYDHDKVIAS
                     GFIE"
     gene            complement(2661..3266)
                     /locus_tag="ACJFD7_001625"
     CDS             complement(2661..3266)
                     /locus_tag="ACJFD7_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0009691 - cytokinin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HGG0860401.1"
                     /translation="MNEKISQDLEKFANIPNLKNAVTFFGSARLKEDNFYYQQAKILA
                     QKCAQNGFCVISGGGGGIMRAANEGAFSQKNNTNSMSSVGFNIFLPHEQKLNDFVEYN
                     ITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
                     RGFDEFVRNSLLKLEVISKGDELKYKITDDLDFIINTLKEI"
     gene            complement(3387..4176)
                     /locus_tag="ACJFD7_001626"
                     /pseudo
     CDS             complement(3387..4176)
                     /locus_tag="ACJFD7_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864361.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(4190..4837)
                     /locus_tag="ACJFD7_001627"
     CDS             complement(4190..4837)
                     /locus_tag="ACJFD7_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860402.1"
                     /translation="MKGFSIKKIFALLALTSLLTSSVFAEDFLAKLTKGALSDTSPGV
                     KELSLEEMKEVKGGYITYLKRLSDNEVIAFAKPDWNLELTLFQDSNGDQYYWNREGLV
                     RFGGMCGIETTNCLVNGKHSYINQKKLWETMSIVGDDPYRNFLGYTVKRNIGISNLGK
                     RFVYFSYGVAVINEQSGSWYRVKSSPVLNNYRVVKEISSNYKDFLERYLGGYSIK"
BASE COUNT         1508 a          834 c          732 g         1900 t
ORIGIN      
        1 taaattacat taccaatatc aaaggataaa caatggatag aaagaaaatt cccttgttgg
       61 tgctgtgtat tttaattgca actgtgtttt ggcttgtacc tactcctgta ggtttggaag
      121 ataattcttg gcattttctt gggcttttta ttgctgtgat tatggcagtg attttacaag
      181 taatgccttt tatagctatt gccatagtag ctcttagtgg tattaccact acccaattga
      241 aaatctaagt aaaatttaca ccaaagctac ttcgaaaact tctacgcaac aacttattga
      301 tgagactaaa atttccttta aatacttcag cacttgattt tttatatcaa aagagcataa
      361 gatgaaaagg taaatactgc tatatcaaat ttaaaatcta aaacgggtat aaaagacgct
      421 ttaagtggtt tttcaaattc tcttatttag cttatagtta ttctattatt gtggctcgtg
      481 gagttattaa aacaggactt ggagagcatt tggcttatca ttttatcagt attcttggta
      541 aaaaaacctt aggtattgct tattctatag ctttttgtga aactatttta gctccagtta
      601 ctccttcaaa tactgcaaga gcaggggcta tcataaatcc tatagttcaa gttattgcaa
      661 gaagttttaa atccactcct gaagatggaa cacaaaataa aataggcact tatctttctt
      721 tggtaaatta tcaagagcca atcctatttc atcagctatg tttattacag ctacagctcc
      781 aaatcctttg gtggttgatc ttatagcaca agctacaaat ttagaagtgc atttaactta
      841 ggggtaatag gctttaggga tgtttttacc tggtatagct gctatgcttt tgatgccttt
      901 gatgctttat tttctctctc cgctagaaat taaatccacg cctaatgctt ctacttttgc
      961 taaagataaa ttaaaagaac ttgtaaaaat gaaaaatagt gaaaaaatca tgctcagtgt
     1021 ttttatctcg cttttacttt tatgggctgg agctttgggc taatttctct tgatgcgact
     1081 agtgtggctt tgcttgggtt gtctttggtg ttgattagtg gagttttaac ttttggggaa
     1141 gttttggctg aaaaagctgc ttggaatact ttagtatggt tttcagctct tgtaatgatg
     1201 gcaactttac ttggcaaact tggtgttaca cagtttttag ctgaagctta aggtgaattt
     1261 gcttctgcta tgggacttgg ggaaatttct attatgatat ttttaagcct tgcttttttt
     1321 atatacacac tatttctttg cttctactac agctcatata tcagcaatgt tttttgtttt
     1381 ttatagtgca gcttgccagg agcaccacca cttttttatg cttttattat gatagcttca
     1441 ggtaatgtta tgatggcatt aactcactat gcaataggaa cagctcctgt tatttttgga
     1501 acaggctgtg taactcttaa aaaatggtgg agtataggtt ttgtgatttc catagttgat
     1561 atagtagtga tgatagctgt tgggcttatt tggtggaaaa ttttaggatt ttattaataa
     1621 tttctaggaa ttaattccta gaaattattc tataaaaccg cttgctatga ctttatcatg
     1681 atcataaaag actgccattt gtccgctagc aagtccataa acaggatctt ttaggatgat
     1741 ttttgcactt ttatcttcat aaatttctac cttgcaaggt gtggattttg aacgatagcg
     1801 gatttttact tcgcaaacaa gctctttagc gtctataaaa agattgatat tttttaggtt
     1861 aaattcactg attttaagtt cttctttggt tcctacgatg atttggtttt gcttaggatt
     1921 gatttttaaa acaaaatgtg gttcatgtgc cccacgcact tcaaagcctc ttcttttgcc
     1981 tatggtatag tgcatatagc cctcatgttt gcctactact tttccgctac tatctaatac
     2041 ttctccagga atttttgtat ccataaactg atctaaaact tgcacataag tatcttcaac
     2101 aaagcaaatt tcagaacttt ccttttgggt ggcaaaagat tttaaaacct cgatagtgga
     2161 agcaaatttt ttcacatctt cttttttcat ttcgcctagc ggaaaaataa gatattttaa
     2221 agcttcttta tctgcactgg ccaaaaaata gctttgatcc ttgctttcat ctactgcggt
     2281 ttttattaag ttgttttcaa gtcttgcata atgccctgtg gcaagttttt cacaacctaa
     2341 acttttagca aattctaaaa gttttccaag tttgataaaa cggttacata aagcgcaagg
     2401 atttggtgtt ttaccctctt tataagtatc cacaaaaggc atgtaaactt tgtttttaaa
     2461 atcttcttgt aagtctaaaa tatgataagg aatttgcaaa aagtttgcaa ctttttctac
     2521 ttttttgata ttttcttcgt gataatttgg tttgccatga agtttcatat aacaacctat
     2581 aacttcatga cctaaatttt taagtttata agcagtgact gtactatcaa ctccaccgct
     2641 catagcgact agaattttca ttaaatttcc tttaaagtat taattataaa atccaagtcg
     2701 tcagtgattt tatactttaa ctcatctcct ttagaaatca cttcaagttt gagtaaagaa
     2761 tttctgacga actcatcaaa acctcgccaa aattcactcc caaacaaaat aataggaaca
     2821 tcttttttaa attctaattg ttttaatgta agaatttcac acaattcatc aagtgttcca
     2881 aagccgcctg ggaagatcac aaaagctaga ctcttttcaa taagagccat tttgcgtatg
     2941 gctaagctct caaaagtaat attatattct acaaaatcat taagtttttg ctcgtgaggt
     3001 aaaaatatat taaaccctac agaactcatt gaatttgtat tatttttttg tgaaaaagca
     3061 ccttcgttgg ctgcacgcat aataccacca cctccaccac ttatcacaca aaaaccattt
     3121 tgagcacact tttgtgccaa aattttagcc tgctgataat aaaaattatc ttctttaagt
     3181 cttgctgaac caaaaaaagt tacggcattt tttaggtttg gtatgttagc aaatttttct
     3241 aaatcttggc ttattttttc attcattttt caacctttag ttaaaataaa ttccattcta
     3301 gctaaaaatt tataataagt tctttattat ataagtttta ataggtttat tttattaaga
     3361 ttaggaattt aaagactttt aaatccttaa gctttaatat ctatactttt tggtgtagaa
     3421 tttaaagaaa ggattttatt aaattctcct gcatcatcat cactaaattt cataccaaaa
     3481 agaagttcta attctttact agtgctaaat ttaccttcta atagtttttt tacaagttcg
     3541 tttcttgtgc tatcatcttt gtaagtttct ttgtttttac tttcgccttg aatggctttg
     3601 aagggttttt cactttgttg agtgataatt tcatcatcac tagaaagcaa cattttatca
     3661 cccatagcca tttcgtattc tttcacaaat tcatcgtgtc tttgcttaaa atctatgtat
     3721 ttagttttaa actcatttaa gcttaaatct ttacttataa gtgcgtcaaa ttctttataa
     3781 aattcatcgg cttttttgat gatgtcgtag cccaaatgaa acatcttaga ataagaaaca
     3841 aaaaaaacct aacatcattt tctcagtagt tgggtcccat tttgtataag caggattaaa
     3901 atcttttaaa ggggattttt ctattttatt ggggtctttt aaagcatttg acttcataaa
     3961 gttgttaaat tcttgcatat cttttttgct aatactttca tcaagtccga atattttagg
     4021 attatactca aatttttttc cacgataagg caaagcacct tctcctgtta taacggctac
     4081 tccgtgtttg ttgattttaa aatcaatatt tttatcttgt ttaaaatttg aagtgttata
     4141 atcatagttt aaatttgagt ttagactatt tatcattagt ttttcctctt tacttgatag
     4201 aatacccacc aagatatctt tctaaaaagt ctttatagtt tgaactgatt tccttaacta
     4261 ctctgtaatt attcaaaaca ggacttgatt ttactctata ccaagaacct gattgttcgt
     4321 tgattacagc cactccataa gaaaaataca caaatctttt ccctaaatta gaaataccaa
     4381 tatttctttt cacagtatat ccaagaaagt tacgataagg gtcatcgccc actatactca
     4441 tagtttccca aagttttttt tgattgatat aggaatgctt accattaacc aaacaatttg
     4501 tagtttctat accgcacatt ccaccaaatc gaacaagtcc ttctctattc caataatatt
     4561 gatctccgtt actatcttga aataaagtta attccaaatt ccaatcaggt ttggcaaagg
     4621 ctataacttc attatcacta agtcgtttta aataggttat atacccaccc ttcacttctt
     4681 tcatctcttc aaggctgagt tctttgacac ccgggcttgt atcgcttaag gcaccttttg
     4741 tgagtttagc taaaaaatcc tcagcaaaaa cagaactagt cagtaaagaa gttaaagcta
     4801 ataaagcaaa aatctttttt attgaaaatc ctttcataaa ttctttttgt aagttcttta
     4861 aaactactat cgacttattc tagcaaaagt ttaatcttgc tttgaaagtt aagtgaattt
     4921 tctttaaata cttaaaattt tattctcggt ttgtttgctt ttgtaataaa tttt
//
LOCUS       DBBXPZ010000105         4954 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.107, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000105 DBBXPZ010000000
VERSION     DBBXPZ010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4954
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.107"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            61..441
                     /locus_tag="ACJFD7_001628"
     CDS             61..441
                     /locus_tag="ACJFD7_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860403.1"
                     /translation="MLIIGHKLLKNLDFSFIESVEEVKDNKVYCIVYDEKLISYLSQN
                     DFEFAILVQNKDEIFLANALGAKFLLCNDKKLAKFASKVAEFYVFDSRVLMIVDKLEN
                     FKKFYKLKIDGIILKDNIDNFPKN"
     gene            486..3998
                     /locus_tag="ACJFD7_001629"
     CDS             486..3998
                     /locus_tag="ACJFD7_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[ACP]--phospholipid O-acyltransferase"
                     /protein_id="HGG0860404.1"
                     /translation="MQKKSFLKIYGLIPFLLIAFINAFVDLGHKIIIQNTIYKAYEGS
                     EQLFLNAIVNALILLPFILMLSPSGFLADKYPKNIVMKISAIFNVILTLIICICYYSG
                     AFWMAFIFTFIMGAQAAIYSPSKYGFIKELVGKDFLAMGNGVINAVSIVAILAGMALF
                     SLSFESLYSSMYNQTDEILKEVAPLGIVLILFSCIEVFFAWRLPKLKQTNKDLVFNKK
                     DYIRGKLLINNLKLVFKNQTIWLCIIGISFFWAISQLYLVSFPVFAKNELFIENTFYV
                     QISLAFSGIGVILGSLVAGKFSKNYIELGLIPLGALGMFLMAFLMPYFISLLSYSFLF
                     FFFGFCGALFIIPLNTLIQFHAKENELGQILAGNNFFQNIAMLGFLLLATLFAKFEIN
                     VVYLFYFITLATFIGSFYILLKLPFSLVRILLSIAFLQRYRLLVEGFENIPEKGGALL
                     LGNHISFIDWAVVQMAIPRKIYFVMERSIYSKWYIKFFLDKFGIIPVSSTGSKTSLEL
                     IAKHIKEGNLVCLFPEGMLSRHGQLNEFKAGFELACECLSEDDGKIIPFYIRGLWGSA
                     FSRSDEEFSARNRTLNKRKIAIAFGKAMSLHSKKDEVKAKVFELSFMAWKSQCEAMHT
                     IARAWIDTAKKNLNQIAIIDTLAGDISYRKMLTLSLFLNFFIKRKSKELNINLQRGSY
                     APKEEAIGILLPASFASSLTNLSVLIAEKIAVNLNFTAGEKALKAAIKNAQISQIYTS
                     KTFLEKLANKGINLNFDTNIHLIYFEDIIEDFKMQKTKIFSMMLAVSIIPSFILKSIF
                     TPSKNNLAIAAILFSSGSEGSPKGVMLNNRNILGNIAQISDVLCTRNNDVILSSLPPF
                     HAFGLTVTTFLPLLEGIKSITFSDPTDALGVAKAVAKNNVTIMCGTSTFLGIYARNKK
                     LDALMFESLRIVVSGAEKLKNEVRTVFEMKFKKSIFEGYGATETTPVASVNLPNHFDV
                     DYWLIHRANKEGSVGMPLPGTAVRIVDPNNYENLKTNEDGLILIGGHQVMVGYLNDKE
                     KTDEVVKEIDGIRWYNTGDKGHLDEDGFLYIVDRYSRFAKIGGEMISLGAIEEEIAKF
                     IDTEVVKFCATSLEDEKKGEQIVLLIECNNEIFEGVCEAIKNSNIPTLFKPRYYFQIE
                     KIPLLGSGKVDLKKVKELAKNLAI"
     gene            complement(4006..4917)
                     /locus_tag="ACJFD7_001630"
     CDS             complement(4006..4917)
                     /locus_tag="ACJFD7_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HGG0860405.1"
                     /translation="MFVFIPLFTIFILLAGGYFAKRIGVLKQKQARTFLDFAIIFALP
                     CLIFDKAYHLNFNFSLIIFIFIGLFSCILAAFFAIFIGKVFHFSKVTLVSMFLLSCFG
                     NTIFVGMPIVAGVFNDPQFSAEVIFYDALATTLPISLFGPFILSLGNGEKVSLLTNVK
                     KILSFPPFLALLFGFLCKLITLPEFIFSPIRLFGASATPVALFAIGLGLGFMAIKTSY
                     KPTIVVIFAKMILAPLFFVFCLKIFNLELKDSTIVAIIESAAPTMTLAGAMVMKAKLD
                     SNLAVSAVAFGVLFAFVSMPILIWTLL"
BASE COUNT         1797 a          635 c          806 g         1716 t
ORIGIN      
        1 ttggtaacaa ttttataagt ataatttaca aaataataaa aaatagagct aaggaaaaaa
       61 atgcttatta ttggacataa attattaaaa aatttagatt tttcttttat tgaaagtgtt
      121 gaagaagtta aagataataa agtttattgt attgtttatg atgaaaaatt gatttcttat
      181 ttaagtcaaa atgattttga atttgctatt ttagttcaaa ataaagatga gatattttta
      241 gccaatgctt taggagctaa gtttttgctt tgtaatgata aaaaacttgc aaaatttgct
      301 agtaaggttg cagaatttta tgtttttgat agtagggttt taatgattgt tgataaatta
      361 gagaatttta aaaaatttta taaattaaaa atcgatggaa ttattttaaa agataatata
      421 gataattttc ctaaaaactg ataaattctt ttgtaaaata agcgctaatt gacgaggttt
      481 aaataatgca aaaaaaatct tttttgaaaa tttacggatt aattcctttt ttacttatag
      541 cattcatcaa tgcttttgtg gatttgggac ataaaattat tattcaaaat actatttata
      601 aggcctatga aggaagtgag cagttatttt taaatgctat agttaatgct ttgattttac
      661 ttccttttat tcttatgctt tctccttcgg gttttttagc ggataaatat ccaaaaaata
      721 ttgtaatgaa aatttcagca attttcaatg ttatactcac tttaataatt tgcatttgtt
      781 actatagcgg tgctttttgg atggctttta tttttacttt tataatggga gcacaagcag
      841 cgatttattc accaagtaaa tacggtttta ttaaagaact cgtgggaaaa gactttcttg
      901 ctatgggtaa tggtgtaatt aatgcggtaa gcattgtggc aatcttagcg ggaatggctt
      961 tattttcttt aagctttgaa agtctttata gttctatgta taatcaaaca gatgaaattt
     1021 taaaagaagt agcgccttta ggaattgtgc taattttatt ttcttgtatc gaagtatttt
     1081 ttgcgtggcg tttacctaag ctcaaacaaa caaataaaga tttagttttt aataaaaaag
     1141 actatattcg tggaaaactt ctaataaata atcttaagct tgtttttaaa aatcaaacta
     1201 tttggctttg tataattgga atttcatttt tttgggctat atctcaactt tatcttgtca
     1261 gctttcctgt ctttgctaaa aatgaacttt tcatagaaaa tactttttat gtgcaaattt
     1321 cactcgcttt ttctggtata ggagtgattt taggctcttt agtagctggt aaattttcaa
     1381 aaaattatat agaacttgga cttattccac ttggtgcatt gggtatgttt ttaatggctt
     1441 ttttaatgcc ttattttata agtttattaa gttatagttt tttatttttc ttttttggat
     1501 tttgcggagc tctttttatc attcctttaa atactttaat ccaatttcat gccaaagaaa
     1561 atgaattggg acaaattctt gcaggaaata atttttttca aaatattgcc atgttaggat
     1621 ttttactctt agcaacttta tttgcaaaat ttgaaatcaa tgtggtttat ttgttttatt
     1681 ttattacttt agcaaccttt ataggaagtt tttatatact tttaaaactt cccttttctt
     1741 tagtgcgtat acttttaagc atagcttttt tgcaacgata ccgcttactt gtagaaggtt
     1801 ttgaaaatat accagaaaaa ggtggagctt tgcttttggg taatcatatt tcttttattg
     1861 attgggctgt tgtacaaatg gcaattccaa gaaaaattta ttttgttatg gaaagaagta
     1921 tttattctaa atggtatatt aaattttttc ttgataaatt tggcattatt cccgtatcaa
     1981 gcacgggaag taagacgagt ttagaactga tagcaaagca tattaaagaa ggtaatttgg
     2041 tttgcttatt tcctgaaggt atgctttcaa gacatggaca attaaatgaa tttaaagcag
     2101 gatttgaatt agcttgtgaa tgtttaagtg aagatgatgg aaaaattatt cctttttata
     2161 taagagggct ttggggtagc gctttttcaa gaagcgatga agaattttca gcaagaaacc
     2221 gcactttaaa taaaagaaaa attgctatag cttttggtaa agccatgtct ttgcattcta
     2281 aaaaagatga agttaaagct aaagtttttg aactttcttt tatggcttgg aaatcacaat
     2341 gcgaagctat gcatactata gcaagagctt ggatagatac agctaaaaaa aatctaaatc
     2401 aaatagctat tatcgataca ctagctggag atatttctta tagaaaaatg ttgactctta
     2461 gtttatttct taattttttt attaaaagaa aatccaaaga attaaacatt aaccttcagc
     2521 gtggaagtta cgctcctaaa gaggaagcta taggaatttt actacctgct tcttttgcaa
     2581 gttctttaac caatctatct gttttaatcg cagaaaaaat tgcagtaaat cttaatttta
     2641 cggctggaga aaaagctcta aaagcagcta taaaaaatgc gcaaatttca caaatttata
     2701 cttctaaaac ttttttagaa aaattagcaa ataaaggtat aaacctaaat ttcgatacaa
     2761 atatacattt aatttatttt gaagatatta tagaagattt taaaatgcaa aaaactaaaa
     2821 tttttagcat gatgctagca gttagtatta tacctagttt tatactcaaa agcatcttca
     2881 ctccttcaaa aaacaatctt gccatcgcag ctattttatt tagtagtgga agtgaaggtt
     2941 ctccaaaagg tgttatgctc aataaccgta atattttagg caatatagca caaatttctg
     3001 atgtgctttg cacaagaaat aatgatgtca ttctctcatc tttaccacct tttcatgctt
     3061 ttggacttac cgtaactaca tttttgcctt tgcttgaagg tattaaaagc atcacttttt
     3121 cagatccaac cgatgcctta ggggttgcca aagctgttgc taaaaataat gtcactatta
     3181 tgtgtggaac ttcaaccttt ttaggaattt atgcaagaaa taaaaagctt gatgctttaa
     3241 tgtttgaaag tttaagaata gttgtatcgg gcgctgaaaa actaaaaaat gaagtaagaa
     3301 ctgtttttga aatgaagttt aaaaaaagca tttttgaagg ttacggggct acggaaacca
     3361 cgcctgtggc gagtgtaaat ttaccaaatc attttgatgt ggattattgg cttatacatc
     3421 gtgccaataa agaaggaagt gtaggaatgc ctctacctgg aactgcggta cgtattgttg
     3481 atccaaataa ttatgaaaat ttaaaaacaa atgaagatgg actcatactt ataggcggtc
     3541 atcaagttat ggtaggctat cttaatgaca aagaaaaaac cgatgaagtg gttaaagaaa
     3601 ttgatggcat aagatggtac aacacgggag ataagggaca tttggatgaa gatggttttt
     3661 tatatattgt cgatcgttat tctcgctttg caaaaattgg cggagagatg atttctttgg
     3721 gtgcaataga agaagaaatt gccaaattta tagacactga agtggttaaa ttttgtgcca
     3781 catctttaga agatgagaaa aaaggggaac aaattgtttt actcatagaa tgcaataatg
     3841 aaatttttga aggagtatgt gaggctataa aaaattctaa tatacctaca ctttttaaac
     3901 ctagatatta ttttcaaata gaaaaaattc ccctcctagg ttcaggaaaa gttgatctta
     3961 aaaaagttaa agaattagct aaaaatttag ccatataatt tgagcttata acaaagtcca
     4021 aattaaaatt ggcatagaaa caaaagcaaa aagaactcca aaggctacag cacttacggc
     4081 taaattgcta tctagtttag ctttcattac catagctcct gctaaagtca tagtaggagc
     4141 tgcactttct ataatagcaa cgatggtaga atcttttaat tccaaattaa atatttttaa
     4201 acaaaataca aaaaataaag gagctaaaat cattttagca aagatgacaa ctattgtagg
     4261 tttgtaagag gttttaatcg ccataaagcc aagtcctaaa cctatagcaa aaagtgcaac
     4321 aggggttgca gaggcaccaa ataaacgaat aggagagaaa ataaattcag gtaaagtaat
     4381 caatttacac aaaaaaccaa aaagcaaagc taaaaaaggt ggaaaactaa gaattttttt
     4441 aacattagta agcaaactga ctttttctcc atttcccaaa gaaagtataa aaggtccaaa
     4501 aagtgatata ggtaaagttg tagctaaagc atcgtaaaat ataacttcag cgctaaattg
     4561 tgggtcatta aatacaccag caacaatagg catacccaca aatatagtat ttccaaaaca
     4621 agaaagcaaa aacatactga ctaaagttac tttagaaaaa tgaaaaactt ttccaataaa
     4681 aatagcaaaa aaggctgcta atatacagct aaacaatcca ataaaaataa aaataatcaa
     4741 tgaaaaatta aaatttaaat gatatgcttt atcgaaaatc aaacaaggta aagcaaaaat
     4801 aatagcaaaa tctaaaaaag tcctagcttg tttttgcttt aaaacgccaa ttcttttggc
     4861 aaaatatccg cctgcaagta aaataaaaat tgtaaataat ggtataaaaa caaacattga
     4921 ataatccttt ttaagggatg ttttttgaaa acgg
//
LOCUS       DBBXPZ010000106         4835 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.108, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000106 DBBXPZ010000000
VERSION     DBBXPZ010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4835)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4835)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4835
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.108"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..738)
                     /gene="map"
                     /locus_tag="ACJFD7_001631"
     CDS             complement(<1..738)
                     /gene="map"
                     /locus_tag="ACJFD7_001631"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HGG0860406.1"
                     /translation="MIELKKPDEIEKLRIANQIVAKTLNFLENEIKIGMSLKQIDKMA
                     EDYILSLGAKPSFKGLYGFPGAICTSLNQVCIHGIPDDKIIKEGDILGLDVGSLIDGY
                     YGDAARTIAIGEVSPADKALISCAKDALYYAIDIIRDGMRFKELSAALGEFIHARGFV
                     PLRGYCGHGIGRKPHGEPEILNYLEKGASAKSGPKIKNGMVFCIEPMICQKDGTPKHY
                     NGKWDAGSIDGLNAAHYEHCVAVINGRA"
     gene            complement(748..1491)
                     /gene="murI"
                     /locus_tag="ACJFD7_001632"
     CDS             complement(748..1491)
                     /gene="murI"
                     /locus_tag="ACJFD7_001632"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HGG0860407.1"
                     /translation="MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDK
                     DTIIKFCLEALEFFEQFQIDMLIIACNTASAYALDALRTKAHFPVYGVIDAGVEATIK
                     ALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQ
                     SAMEYYFKNITTPDALILACTHFPLLGRFLSKYFGDKTKLIHSGDAIVEFLKERENID
                     LKNHKAKLHFYASSDVKSLKNTAKIWLNL"
     gene            complement(1493..1951)
                     /locus_tag="ACJFD7_001633"
     CDS             complement(1493..1951)
                     /locus_tag="ACJFD7_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HGG0860408.1"
                     /translation="MRHIFFIITIIFFISGCSFYQNLNYRPSYNTNKEARLKVIANEW
                     KKTPYVLGGTSKKGADCSGFTQSALAQLNIRIPRTTKTQLGSGRKVSKSKLQTGDLVF
                     FKTGRGPNGMHVGIYMSKGKFIHLSTKGGVKEVELNSSYWKARYIGARRY"
     gene            complement(1960..3129)
                     /gene="nhaA"
                     /locus_tag="ACJFD7_001634"
     CDS             complement(1960..3129)
                     /gene="nhaA"
                     /locus_tag="ACJFD7_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006885 - regulation of pH [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HGG0860409.1"
                     /translation="MNNIVHKLKTLVLNEAFGGVLLIVCTLLALLVQNGSFSEHYREF
                     LNLKVGFSVGEFELNKPFLLWINDGLISIFFFAIGLELKKEFLHGDFKNPKNIVLPFM
                     AALGGILIPAMLFALVNIGDAYTLKGWAIPTATDTAFALAILMMCGKHIPSSLKIFLL
                     SLAIFDDVGAILIIAIFYTTKLSIVAFVVAGLAILVMLILNLLGITRKSFYFICSVIL
                     WISVLKSGVHATLAGIVTAFFIPMQTKNGEAFLEEIYESLKFWIAFIILPLFAFANAG
                     VNLSNIDIGAIFSGVSIGIFLGLFVGKQVGVFLFSYLAIRFKFAALPQGSNLKQLYGV
                     CILTGIGFTMSLFIDGLAYEVSDIFNYADNLAILIASFCSGIWGFIYLKFFTTRS"
     gene            complement(3126..4274)
                     /gene="nhaA"
                     /locus_tag="ACJFD7_001635"
     CDS             complement(3126..4274)
                     /gene="nhaA"
                     /locus_tag="ACJFD7_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006885 - regulation of pH [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HGG0860410.1"
                     /translation="MQMIKKMVLSETFPGILLIFFTFLALLCKNSSLSVIYTDFFHAN
                     FTVGFDHFQISKSLDLWINDGLIAIFFLCIGLELKYEILRGQLKNIRAVSLPIFGALG
                     GMITPALIFIAINYSHDFAMKGWAIPTATDIAFAVGILMLLGNKIPTSLKLFLLSLAI
                     FDDLGAIVIIALFYTDQLSVLAIIICLFCIFALLLLNYYHITHLSLYVLVGVVLWIAM
                     LKSGVHATLAGVIISLFIPLDTKNKKPYLHEVLKDLNPWVVYFILPLFAFANAGIDIR
                     DMHLGSVFSPVSLGIILGLFLGKQLGVFTFCFIAIKLKLAKLPENIKYGKFYGICILT
                     GIGFTMSLFIDGLAYKNSDIFEYADKLAILVASFLSAIVGFIYLKIVK"
     gene            complement(4417..4599)
                     /locus_tag="ACJFD7_001636"
     CDS             complement(4417..4599)
                     /locus_tag="ACJFD7_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfB family protein"
                     /protein_id="HGG0860411.1"
                     /translation="MVSDVSMGNVNLMTAVNTSVLKKSMDTNEALMNELIEGMEGVSQ
                     ASALQASSSSGLDIYA"
BASE COUNT         1840 a          908 c          583 g         1504 t
ORIGIN      
        1 agcacgccca ttaatcacgg caacacaatg ttcataatga gccgcattaa gcccatcaat
       61 acttccagca tcccattttc cattataatg ctttggtgtt ccatcttttt ggcatatcat
      121 aggctctatg caaaacacca ttccattttt aattttaggg ccactttttg cactcgcacc
      181 tttttctaaa tagtttaaaa tttcaggctc tccatggggc tttcgtccta taccatgccc
      241 gcaatatcca cgaagcggga caaaacctct tgcatggata aattcgccta aagcagctga
      301 aagttcctta aaacgcattc catcacgaat aatatctata gcataatata acgcgtcttt
      361 agcacaagag attaaagctt tatcagcggg tgaaacttct cctatagcaa tagttcttgc
      421 tgcatcccca taatacccat caatcaaact tcccacatca agacctaaaa tatcaccctc
      481 tttgataatt ttatcatctg gaattccatg gatacaaact tgatttaaag atgtgcaaat
      541 ggcacctgga aaaccataaa gtcccttaaa tgatggcttg gcgccaaggc ttaaaatata
      601 atcttctgcc attttatcga tttgttttaa gctcattcct attttaattt cattctctaa
      661 aaaatttaaa gtttttgcta caatttgatt tgctattctt aatttttcta tttcatctgg
      721 ttttttcaat tctatcattt tatttcctta taaatttagc caaattttag cagtattttt
      781 taaagattta acatcgcttg aagcataaaa atgtaatttt gctttatgat ttttcaaatc
      841 tatattttct ctttctttaa gaaattcaac tatagcatct cctgaatgaa ttaattttgt
      901 tttatcacca aaatacttac ttaaaaaacg acctagtaaa gggaaatgag tgcaagcgag
      961 tatcaaagca tctggagttg tgatattttt aaaataatac tccatagcgc tttgcaaaaa
     1021 atctccttca aaaatacctt cttcaaccat aggcacaaaa agccctgtag ctaaagcatt
     1081 tatatttgta tatccttggg ataataaacg cttttggtat tcttctgatt taatggttgc
     1141 ttttgtcgca atgactaaaa tttctttatt tttatcatgc aaagctttta tcgttgcttc
     1201 aacccctgca tcaattacac catatactgg aaaatgtgct tttgtcctta aagcatctaa
     1261 agcataagca ctagcagtat tacatgcaat gataagcata tcaatttgaa attgttcaaa
     1321 aaattccaat gcttcaagac agaactttat aatagtatct ttatctttta ctccataagg
     1381 aactcttgcg gtatctccat aatagataat ttcatcaaaa agtctagctt cataaagaga
     1441 ttttaaaacg ctaagccccc ctaccccgct atcaaataca cctattttca ctttaatacc
     1501 ttcttgctcc tatataacga gccttccaat aagaactatt tagctcgact tcttttactc
     1561 cacctttagt agataaatgt ataaattttc ccttgctcat ataaatacca acatgcatac
     1621 catttggccc tctacctgtc ttaaaaaata ccaaatctcc tgtttgcaat tttgatttag
     1681 aaacttttct tccagaacct aattgagttt ttgtagtgcg aggtatgcgt atattaagct
     1741 gagctaatgc gctctgtgta aatcctgaac aatcagcacc ttttttacta gttccaccta
     1801 aaacataagg ggtttttttc cattcatttg caataacctt gagccttgct tctttatttg
     1861 tgttgtaact aggacgatag tttagattct gataaaaact acatccactt ataaaaaata
     1921 taatcgtaat aataaaaaaa atatgcctca tcaatcccct taagatcgag tagtaaagaa
     1981 tttaagataa ataaaacccc aaatcccaga acaaaatgag gctataagaa tagctaagtt
     2041 atctgcataa ttaaaaatat cactaacttc atacgccaat ccatcaataa acaaactcat
     2101 tgtaaaacca attcctgtaa gtatgcaaac cccataaagt tgtttcaaat ttgaaccttg
     2161 gggcaaagct gcaaatttaa agcggattgc caaataagaa aataaaaata cacccacttg
     2221 tttacccaca aaaagcccta agaaaatacc tatacttaca cctgaaaaaa ttgctcctat
     2281 atcgatattg gataaattta ctccagcgtt agcaaaagca aataaaggta aaataataaa
     2341 agcaatccaa aattttaagc tttcataaat ttcttctaaa aatgcttccc catttttagt
     2401 ttgcatcggt ataaaaaatg ctgttacaat tccagctaaa gttgcatgta ctccactttt
     2461 taaaacacta atccaaagaa taactgagca aataaaataa aaagactttc ttgttatccc
     2521 taaaagattt aaaataagca ttaccaaaat agcaagtcct gcaacgacaa aagcaactat
     2581 tgataatttt gtcgtataaa aaatagctat aattaaaata gcacccacat catcaaaaat
     2641 agccaaagaa agtaagaaaa tttttaaact tgatggaatg tgcttgccac acatcattaa
     2701 aatcgctaag gcaaacgctg tatctgtggc tgtaggtata gcccaacctt ttaaagtata
     2761 agcatctcct atatttacca aagcaaacaa catcgcaggt ataagtatac cgcctaaagc
     2821 agccataaaa ggtaaaacaa tatttttagg atttttaaaa tccccgtgca aaaattcctt
     2881 cttaagctca agccctatag caaagaaaaa tatagatata agcccatcat ttatccaaag
     2941 taaaaaaggc ttattaagct caaattcacc tacactaaat ccgactttta aatttagaaa
     3001 ttctcgataa tgttcgctaa aagatccatt ttgcacaagc aaagcaagca aagtacaaac
     3061 tataagtaaa acgccgccaa aagcctcatt taaaactaaa gtttttaatt tatgtactat
     3121 attattcatt taacaatctt aagataaata aaaccaacaa tggcacttaa aaaactagct
     3181 actaaaatag caagtttatc cgcatattca aaaatatcac tatttttata agccaaacca
     3241 tcaataaaca agctcatcgt aaaaccgatg cctgttaaaa tacatatacc ataaaatttt
     3301 ccatatttaa tattttcagg taattttgca agtttaagtt tgatagcaat aaaacaaaaa
     3361 gtgaaaacac ctaattgttt tcctaaaaat agtcctaaaa taatcccaag acttacagga
     3421 gaaaatactg aaccaagatg catatctcta atatcaattc cagcattggc aaaagcaaat
     3481 aaaggtaaaa taaaataaac tacccaagga tttaaatcct taagaacttc atgtaaataa
     3541 ggttttttat tttttgtatc aagaggtata aacaaagaaa tgatcacacc agccaaagtt
     3601 gcatgcactc cacttttaag catagctatc cacaacacaa cacctaccaa cacgtacaaa
     3661 gaaagatggg tgatgtgata ataatttaac aaaagcagag caaatataca aaacaaacaa
     3721 ataataattg ctaaaactga aagctgatct gtataaaaca aagcaataat aacaatagca
     3781 cccaaatcat caaaaatagc taaagagagt aaaaaaagtt ttaaacttgt aggaatttta
     3841 tttcccaaaa gcattaaaat acccactgca aaagctatat cagttgctgt aggtattgcc
     3901 caacctttca tagcaaaatc atgagaataa ttaatagcaa taaaaattaa agccggagta
     3961 atcatacccc ctaaagctcc aaatataggt aaagatacag ctcttatatt tttaagttgc
     4021 ccacgtaaaa tttcatattt taactcaagc cctatacata gaaaaaatat agctatcaaa
     4081 ccatcattta tccataaatc caacgatttt gaaatttgaa aatgatcaaa tcctactgta
     4141 aaattagcat gaaaaaaatc tgtataaata acacttaaag aagaattttt acataataaa
     4201 gctaaaaatg taaaaaatat aagcaaaata ccagggaaag tttcacttaa aaccatcttc
     4261 tttatcattt gcatccttgc tcctaagtaa atatttgtaa aaatttaata cgataaataa
     4321 aatggtaaaa ttataacgaa aaaatactaa agaaataatt atttaaaaaa acaagcccaa
     4381 gataccaaaa agttcttaag cttgttctta agatatttaa gcgtaaatat ccaaaccact
     4441 agagctagac gcttgtagag cggaggcttg agagacacct tccatacctt cgatgagttc
     4501 attcatcaat gcctcgtttg tgtccataga ttttttcaaa actgaagtat taacagcagt
     4561 cattaaatta acattaccca tagaaacatc tgaaaccata catcctcctt ttagattgag
     4621 tcttaagact ttatttaaat cggatgatat ttttaaaact taatattttt tactaaactt
     4681 tttaaaattt ttcaagggaa ccaatatctg aaattaaaaa tcataaattt tttaagataa
     4741 aatcctattt taaaaatttt tacactatga aacaataagc aaaatataaa tgattgatgc
     4801 ttttaaaagc gaattaaatg gataaaaatt tattt
//
LOCUS       DBBXPZ010000107         4689 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.109, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000107 DBBXPZ010000000
VERSION     DBBXPZ010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4689)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4689)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4689
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.109"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            56..1738
                     /locus_tag="ACJFD7_001637"
     CDS             56..1738
                     /locus_tag="ACJFD7_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HGG0860412.1"
                     /translation="MEQILTWQQIYDPFSNIWLSALVAFLPILCFLVCLVVLKLKGYQ
                     AGFLTVILATLVALFAYKMPWNLVGASFIQGFTNGMWPIAWIIIAAIFLYKLSIKSGS
                     FEIIKKSVMSITPDHRIQVILIGFCFGSFLEGAIGFGGPVAITAALLVGLGLRPLQAA
                     GLCLIANTAPVAFGAVGIPIIAMANLVGIEQHSVSAMVGRMLVPLSLTIPFFIVFLMD
                     GFKGIKETFPAILVAALSFTTTQFLSSNHLGAELPDIISAVVSLAVTTVFLKFWKPKN
                     IFRFDNESNFTQDNTLSFNQILKAWSPFILLIVCIIIWTQPWFKALFDKDGILSYTSI
                     TLQFSNITTGILSPSITGIGEAKPLSLALGVDLINGKTVAQAGTAILLAAFLTIAILK
                     IKAEDAAECFWVTLKEMAIPCITIGLVVAFAFISKNSGMSTTLGLAFAHTGDAFSFFS
                     PIIGWIGVFLTGSDTSANLLFGTLQQVSAQKLGISEALFLAANSVGGVVGKMISPQSI
                     AIACAAVGLVGKESDLFKFTLKYSVAFIILIGIWTCIIAFFLQGIIPEVIVK"
     gene            1862..2602
                     /locus_tag="ACJFD7_001638"
     CDS             1862..2602
                     /locus_tag="ACJFD7_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HGG0860413.1"
                     /translation="MMKKVYFYATCLGSAAMQQSVLNAIKLLRREGIEVIFKKNQTCC
                     AQPSFNSGYFDESREIALYNVDLFDKDYPIVVPSGSCAGMMSHDYKELFKNRPEFSKI
                     KTFSSRVIELSQYLDEVLKVDYEDKGAPIKVTWHSNCHALRVQKSIQASKNLIKKLKN
                     VELVELQYEEECCGFGGTFSVKEPEISNAMVRSKIKDIQNSGAKYLISGDGGCLLNID
                     GTMKRMGLDIKGIHLYDFLLKRLEGERL"
     gene            2599..4038
                     /locus_tag="ACJFD7_001639"
     CDS             2599..4038
                     /locus_tag="ACJFD7_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0019516 - lactate oxidation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LutB/LldF family L-lactate oxidation iron-sulfur
                     protein"
                     /protein_id="HGG0860414.1"
                     /translation="MSQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFK
                     DWQGLRAKAKQAKNNALMSLEERLLEFEKNATKNGIKVHWASSDEDACEIVYEIMKEK
                     NITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
                     HEIGEIFKEKLGANLENDEPESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLI
                     ENEGNGRMCTTAPDIHIALCGIEKVMESFEDAATMVSLLTPSATGQFIPTYNNIITGP
                     RKNGDLDGPKEVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQ
                     TTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQ
                     GKNPPLGANNVHHNALEAFAFKQFKNIATNGDKWRFSLSKAHYFNWTVQNFASILPVI
                     KKWYAFKELPQIKMDLYKEVQKLEGVSYE"
     gene            4031..4687
                     /locus_tag="ACJFD7_001640"
     CDS             4031..4687
                     /locus_tag="ACJFD7_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HGG0860415.1"
                     /translation="MSKIDEISSKSKANILEHLKKAYKETTFTRIESIDPVEHIQTTQ
                     DMLTEMKQKMSDNKYIVENATKDTLEEKINEIVAKYGFKSMIYGADLNLNLEQIKAEK
                     KICFDKEIENLRSEVFHSDFSIIHARAGVSSHGVALIPSSKTQPRMLSLAPKLCIVLL
                     KKENVVKSLSEALNLVKKENEILPTNILFIAGPSRTADIELITVFGVHGPQIAHIIIY
                     "
BASE COUNT         1605 a          717 c          856 g         1511 t
ORIGIN      
        1 aatttaattt tttgttacaa taaatttata cataataatt atcaaggagg aaaaattgga
       61 acaaatttta acatggcaac aaatttatga ccctttttca aacatttggc taagtgcttt
      121 agtggcattt ttacctatac tatgtttttt agtttgtttg gttgttttaa aacttaaagg
      181 ctatcaagca ggttttttaa ctgttatact tgctactttg gtagctttat ttgcctataa
      241 aatgccttgg aatttagtgg gtgcaagttt tattcaaggc tttacaaatg gtatgtggcc
      301 tatagcttgg attatcatcg cggcaatctt tctttacaaa ctttctatca agtcaggttc
      361 ttttgaaatc attaaaaaaa gcgtgatgag cattactcca gatcatagaa ttcaagtgat
      421 tttaataggt ttttgttttg gttcattttt agagggtgct ataggttttg gtggccctgt
      481 ggctataacc gctgcacttt tagtaggact tggcttgcgt cctttacaag ctgcagggct
      541 ttgtcttatc gcaaataccg ctcctgttgc ttttggtgcg gtgggaattc ctattattgc
      601 tatggcaaat cttgtcggca tagaacagca ttcagtttct gccatggtag gtagaatgct
      661 agttccttta agccttacta tacctttttt catagttttt ttaatggatg gatttaaagg
      721 tattaaagaa acttttccag ctattttagt tgcggcgcta agttttacaa ctactcaatt
      781 tttaagctca aatcacctag gagcggaatt acctgatatt atttcagctg tggtttcttt
      841 agcagttacg actgtatttt tgaaattttg gaaaccaaaa aatattttta gatttgacaa
      901 tgaaagcaat ttcactcaag ataacacctt aagttttaat caaattttaa aagcttggtc
      961 accttttatt ttactcattg tttgtattat catttggaca caaccttggt ttaaagctct
     1021 ctttgataag gacggaattt taagctatac aagtattact ttacaattta gcaatatcac
     1081 aactggaatt ttaagccctt ctatcacagg cataggagaa gctaagcctt tatctttggc
     1141 cttgggtgta gatttaatca atggaaaaac cgtagctcaa gcaggaacag cgattttact
     1201 tgccgctttt ctaactatag ctattttaaa aatcaaagcc gaagatgctg cagaatgctt
     1261 ttgggttacc ttaaaagaaa tggctatacc ttgtatcacc ataggtttgg ttgtggcctt
     1321 tgcttttatc tctaaaaata gtggtatgag cactacttta ggacttgctt ttgcacacac
     1381 aggtgatgct ttttctttct tttcaccaat cattggctgg ataggggtat ttttaacagg
     1441 ctctgataca agtgctaatt tactttttgg aaccttgcaa caagtaagcg ctcaaaaact
     1501 aggtattagc gaagctttat ttttagcagc taattcagta ggtggggttg ttggaaagat
     1561 gatcagtcca caaagcattg ctatagcttg tgcagcggtt ggacttgtgg gaaaagaatc
     1621 tgatcttttc aaattcacat taaaatattc tgtagctttt attattttaa taggaatttg
     1681 gacttgcatt atagcttttt tcttacaagg aatcatccct gaagttatag tgaaataatt
     1741 aaaaaaaatt aagttttatt tcaacaaata ttcgttttta gaatatttgt tagaaatttt
     1801 actttgcttt tatttttaca ggattagaat atttatccta aattatccta aaaggagaaa
     1861 aatgatgaaa aaagtgtatt tttacgccac atgcttagga agtgctgcta tgcaacaaag
     1921 cgttttaaat gcgataaaac ttttaaggcg tgagggtatt gaagtgattt tcaaaaaaaa
     1981 tcaaacctgt tgcgcccaac cttcttttaa ctcaggttat ttcgatgaaa gtcgtgagat
     2041 cgctttatat aatgtagatt tatttgataa agattatccc atcgttgtac ccagtggttc
     2101 ttgtgcgggt atgatgagtc atgactataa agagcttttt aaaaacagac ctgaattttc
     2161 caaaataaaa acttttagct ctagagtgat agaactttca caataccttg atgaagtttt
     2221 aaaagtagat tatgaagata aaggtgcacc tataaaagta acttggcatt ctaattgcca
     2281 tgctttaaga gtgcaaaaaa gcatacaagc gagtaaaaat cttatcaaaa aactaaaaaa
     2341 cgtagaatta gtagaacttc aatacgaaga agaatgctgt ggttttggag gaaccttttc
     2401 agtaaaagag cctgaaattt caaatgctat ggtaagaagc aaaatcaaag atatacaaaa
     2461 tagcggtgca aaatatctca tcagtggtga tggaggttgt cttttaaata tagatggcac
     2521 aatgaaaaga atgggtttgg atataaaagg catacattta tatgactttt tacttaaacg
     2581 cttagaagga gagagactat gagtcaaaaa attcctcacg aacaaatcgt tcaaattaaa
     2641 ctcaatgaca aacaaatgca agaaaattta atgactgcca tgcatacttt gcaaaaaaat
     2701 agactcaatg ttattgatgc tagatttaaa gactggcagg gcttaagagc taaagctaag
     2761 caagctaaaa ataatgcctt aatgagctta gaagaaagac ttttagaatt tgaaaaaaat
     2821 gctacaaaaa atggcattaa ggtgcattgg gcaagtagcg atgaagatgc ctgtgaaatc
     2881 gtctatgaaa tcatgaaaga aaaaaatatc accaagcttt taaaaggcaa gtctatggca
     2941 agtgaagaaa taggcctaaa tcactaccta gaaaaaaaag gtttaaaagc tatagaaacc
     3001 gatcttggag agcttatttt acagcttaat gaagaacctc ctttacacat agttgtacct
     3061 gccatacata gaaaccgcca tgaaatcgga gaaattttca aagaaaaatt aggagcaaat
     3121 ttagaaaacg atgaacccga aagtttaaat gcggtggcta gagaacattt aagaaaagat
     3181 tttgaaggct taaaacttgg acttagtggg gtcaattttg ccatgtcaag agaaggagct
     3241 ttttggctta tagaaaatga aggaaatggt agaatgtgca ctacagcacc tgatattcat
     3301 atcgcacttt gtggtataga aaaagtcatg gaaagctttg aagatgcggc tactatggtt
     3361 tctttactta ctccttcagc cacaggacaa tttataccaa cttataacaa tatcattaca
     3421 ggccctagaa aaaatggaga tttagatggt cctaaagaag tacatgtgat tttatttgat
     3481 cacaatcgct ctaaaatgtt agctcatgag gattattatg aggctttgcg ttgtattcga
     3541 tgcggggctt gtatgaattt ttgccctgtt tatgatcaaa tcggcggaca tgcttatcaa
     3601 accacttatc caggacctat aggagaagta atcagtccta atatttttgg tatagatcat
     3661 acaggagata ttttgaattt ctgttcactt tgtgggcgtt gttctgaagt ttgtccagtc
     3721 caaattcctt tggctgatct tattcgcaaa ttaagatgtg ataaaatagg acaaggtaaa
     3781 aatccacctt taggagcaaa taatgttcat cacaatgccc tagaagcctt tgcttttaaa
     3841 caatttaaaa atatcgcaac caatggcgat aaatggcgtt tttcactttc aaaagcacat
     3901 tatttcaact ggacggtaca aaatttcgca agcattttgc ctgtgattaa aaaatggtac
     3961 gcttttaaag aattacctca aattaaaatg gatctttata aagaagtgca aaaactagaa
     4021 ggagtaagct atgagtaaaa tcgatgaaat ttcaagcaaa agcaaagcaa atattttaga
     4081 acatcttaaa aaagcttaca aagaaacaac tttcacacgc attgaaagta tagatcctgt
     4141 agaacatatc cagacaaccc aagatatgct tacagaaatg aagcaaaaaa tgagcgataa
     4201 caaatacatc gttgaaaatg ctacaaaaga taccttagaa gaaaaaatca atgaaattgt
     4261 cgcaaaatat ggctttaaaa gtatgattta tggagcggat ttaaatttaa atttagaaca
     4321 aatcaaagca gaaaaaaaga tttgctttga taaagaaatc gaaaatttaa gatctgaagt
     4381 ttttcatagt gatttttcca tcattcacgc aagagcaggg gtaagctctc acggagttgc
     4441 acttatacct tcaagtaaaa cccaacctag aatgctaagc cttgcaccta aactttgcat
     4501 agtattgctt aaaaaagaaa atgttgttaa aagtcttagc gaagctttaa atttagtaaa
     4561 aaaagaaaat gaaattttac ctactaatat cttatttata gcagggcctt caagaacagc
     4621 agatatagaa cttatcactg tttttggtgt tcatgggcca caaattgcac atattattat
     4681 ttactgatt
//
LOCUS       DBBXPZ010000108         4663 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.110, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000108 DBBXPZ010000000
VERSION     DBBXPZ010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4663)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4663)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4663
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.110"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            121..1116
                     /locus_tag="ACJFD7_001641"
     CDS             121..1116
                     /locus_tag="ACJFD7_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HGG0860416.1"
                     /translation="MKKILSLSVASLALCGALNAADLKIAGSSTVYPFTSFVAEEYAS
                     IKNTKTPIVESLGTGGGFKVFCEGTTDISNASRPMKLSEFETCKKAGVTDIVGMMIGY
                     DGIVLAQNKTNAPLNITKKELFLALAKEIPQNGKLIPNPYTNWNQINKNLPNRKISVY
                     GPPSSSGTRDTIEELVMSDVSKKIPEYKGEYKTIRQDGAYIPSGENDNLIVSKLTIDK
                     DAFGIFGYSFLVSNSDKINAANIDGVTPSEESIADEKYELARSLFIYINAKKNPKEAF
                     DFAKIYMSDDLAKSGGELEKIGLVPLSDDKLKASQKHVEDRKILNDELVKAGKVF"
     gene            1126..2040
                     /gene="pstC"
                     /locus_tag="ACJFD7_001642"
     CDS             1126..2040
                     /gene="pstC"
                     /locus_tag="ACJFD7_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HGG0860417.1"
                     /translation="MLKEKIIKFALFLCAFVSVIVSFAIMLTILIEALKFFQKESVVT
                     FLFSSQWAADAAFMNADGTSKQGVFGALSLFWGTFYISLIAMLTALPLGIMCAIYLGV
                     FAGKKSKNYLKPILEIIAGIPTVVFGFFAAIVVAPFIVWFFSLFGIQASFQSALGAGF
                     IMGIMIVPIVASLSQDCIEAVSEKRINGAYALGMTKKEVVFAVILPEAIPGIVAACLL
                     GLSRALGETMIVVMAASLRPNLTMNFLEDMTTVTVKIVEALSGDQAFDSSLALSAFSL
                     GLVLFIITLIINMFSVYLINRFHKRKNL"
     gene            2037..3125
                     /gene="pstA"
                     /locus_tag="ACJFD7_001643"
     CDS             2037..3125
                     /gene="pstA"
                     /locus_tag="ACJFD7_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HGG0860418.1"
                     /translation="MKKLFKKRQKASKSFKRLCKMGLYINLIFLCIFLGSVAYLGFPA
                     FKQTYIFVEANRNSPAYDLLSRAEQRKIRTGQITEKSWLLANSEVDQYMKQKYNRLSE
                     KQRILVDDLMQKGEIELKFNSNFFLNGDSKSPENSGILSSVVGTLLVMLVCMVVSVPI
                     GVAAAIYLEEFAPQNILTHFIEVCINNLASIPSILFGLLGLGVFINLFGIPRSSALVG
                     GLTLAIMSLPIIIVSTKAALKSVDINMKNAAYALGMTKVQMVKGIMLPLAMPMILTGS
                     ILTLAGAIGETAPLMIIGMIAFIPDVASSIFDSTSVLPAQIYSWSAMPERAFLERTAA
                     GIIVLLGLLVMLNLSAIFLRKYFQGKLK"
     gene            3122..3862
                     /gene="pstB"
                     /locus_tag="ACJFD7_001644"
     CDS             3122..3862
                     /gene="pstB"
                     /locus_tag="ACJFD7_001644"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HGG0860419.1"
                     /translation="MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTF
                     LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA
                     PKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK
                     PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE
                     LIEFGESKEFFENPKQEKTKAYLSGAFG"
     gene            3924..>4663
                     /locus_tag="ACJFD7_001645"
     CDS             3924..>4663
                     /locus_tag="ACJFD7_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HGG0860420.1"
                     /translation="MIINQIYSIDSCDDVELNIKRGSKLEFRLTYDDSKEIEAIVCII
                     PGGAEDMNSYIYIDDYLTRNYKVAVININYHCIGNRPHLGSSFYLDDIDKFILDTSLK
                     AINLKCINVYGINSYENLNNAFIRIDQEIQKLKLNQQLHQNYKLKTHVSFLPFKNEYQ
                     NFGIMQAMDILNAIFYIKENSPFKLMRGGGIRTILFGNSYGGYLANLCAKIAPWSIDF
                     ILDNSSFVNLFGNIFRLIGFGKEIDFTR"
BASE COUNT         1583 a          597 c          875 g         1608 t
ORIGIN      
        1 tttgatagtt aaaaattata tttaagaaaa atacaaaata aaaaatgttt ccaaaatgtt
       61 tccaaaatgt ttccaagttt ttttaaactt ccattgcttt tttaaagtta aggagaaaaa
      121 atgaaaaaaa ttctatcttt aagtgtggca agtcttgcac tttgtggtgc tttaaatgca
      181 gcagatttaa aaatcgcagg ttcatcgact gtgtatcctt ttacttcttt tgtagctgaa
      241 gaatatgctt cgattaaaaa tacaaaaacc cctatagtag agagcttggg aacagggggt
      301 ggatttaagg tattttgtga aggaactact gatatttcta atgcttcaag acctatgaaa
      361 ttaagcgaat ttgaaacttg caaaaaagca ggggtaactg atatagtagg gatgatgata
      421 ggttatgatg gtatagtttt agctcaaaat aaaaccaatg ctccattaaa tatcacaaaa
      481 aaagaacttt tcttagcatt agcaaaagaa attccacaaa atggaaaact tataccaaat
      541 ccttatacaa actggaatca aatcaataaa aatttaccaa atcgtaaaat tagtgtttat
      601 ggtccaccat caagttcagg aacaagagat actatagaag agcttgtaat gagtgatgtg
      661 tctaaaaaaa ttcctgagta taaaggcgag tataaaacca tacgccaaga tggtgcttat
      721 atcccaagtg gtgaaaatga taatctaatc gtttccaaac ttactattga taaggatgct
      781 tttggaattt ttggttatag ctttttagtg agcaattcag acaaaatcaa tgctgctaat
      841 atcgatggtg ttacgccaag cgaagaaagc atcgcagatg aaaaatacga acttgcaaga
      901 agtttgttta tttatatcaa tgctaagaaa aatccaaaag aagcctttga ttttgcaaaa
      961 atttatatga gtgatgattt ggcaaaaagt ggtggagagc ttgaaaaaat aggacttgtt
     1021 cctttgagtg atgataaatt aaaagcttct caaaaacacg tagaagatag aaaaatttta
     1081 aatgatgagc ttgtaaaagc tggaaaagtt ttttaaggaa aaactttgtt aaaagaaaaa
     1141 ataatcaaat ttgcactttt tttatgtgct tttgtaagtg tgatagtaag ttttgctatc
     1201 atgcttacaa ttttaattga agctttaaaa ttctttcaaa aagaaagcgt tgttaccttt
     1261 ttattctcaa gtcagtgggc agctgatgca gcttttatga atgcagatgg cacgagtaaa
     1321 caaggtgttt ttggggcgct atcgcttttt tggggaactt tttatatttc attgattgct
     1381 atgctaacgg ctttaccttt agggattatg tgtgctatat atttaggtgt ttttgctggc
     1441 aaaaaatcta aaaattactt aaaacctatt ttagaaatca ttgcagggat tcctactgtt
     1501 gtttttggat tttttgcggc tatagtcgta gcgcctttta tagtgtggtt tttttcttta
     1561 tttgggatac aggcaagttt tcaaagtgct ttaggcgcag gttttatcat ggggatcatg
     1621 atagtaccta tagtggcttc gttatctcaa gattgcattg aagcagtaag cgagaaaagg
     1681 attaatggcg cttatgcttt aggtatgaca aaaaaagaag tggtttttgc tgtgatttta
     1741 cctgaggcta ttcctggtat agttgcagct tgtcttttag ggctttcaag agccttaggc
     1801 gaaactatga tagtggtaat ggcagcttct ttgcgtccaa atttaacgat gaatttttta
     1861 gaagatatga caacagtaac ggtaaaaatc gtagaagctt taagtggaga tcaagctttt
     1921 gatagttctt tggctttgag tgctttttct ttaggtttgg tgctttttat catcacttta
     1981 atcatcaata tgtttagcgt ttatctcatc aatcgctttc acaaaaggaa aaatttatga
     2041 aaaaactttt taaaaaaaga caaaaagctt caaagtcttt taaaagactt tgtaaaatgg
     2101 ggctttatat taatttaatt tttctttgta tctttttagg aagtgtggct tatcttggat
     2161 ttcctgcttt taagcaaacc tatatttttg tagaggctaa tagaaattct cctgcttatg
     2221 atcttttatc tcgtgctgag caaagaaaga taagaacagg gcaaatcact gaaaaatctt
     2281 ggcttttggc aaattcagaa gtagatcaat atatgaagca aaaatataat cgccttagtg
     2341 aaaaacaaag aattttagtc gatgatctta tgcaaaaagg cgagatagag cttaaattta
     2401 atagcaattt cttcttaaat ggggactcaa aatctcctga aaattcagga attttatctt
     2461 cagttgtagg gactttgctt gttatgcttg tttgtatggt tgtgagtgtt cctataggcg
     2521 ttgcagcggc aatttactta gaagaatttg cgccacaaaa tatccttaca cattttatag
     2581 aagtgtgtat taacaacctt gcaagtattc caagtatctt gtttggactt ttaggacttg
     2641 gagtgtttat caatcttttt ggaatacctc gctcaagtgc tttagtgggt gggcttactt
     2701 tggcgatcat gagtttacct attatcattg tttcaactaa ggcagcttta aaaagtgtgg
     2761 acattaacat gaaaaatgcc gcttatgcct taggtatgac taaggttcaa atggtaaaag
     2821 gcattatgct acctttagct atgcctatga ttttaacagg ttctattttg actttagcag
     2881 gggctatagg cgagactgca cctttgatga ttatcggtat gatagccttt atccctgatg
     2941 tagctagttc gatttttgat tcaactagcg ttttgcctgc tcaaatttac tcatggtcgg
     3001 ctatgccaga gcgtgcattt ttagaaagaa ccgcagcggg tattattgtg cttttaggac
     3061 ttttagttat gttaaatctt agtgcaatat ttttaagaaa atattttcaa ggaaaattaa
     3121 agtgatagca aaaacaacaa atttaaattt attttatgga aaaaaacaag ctttatttga
     3181 tatcaatatg caaatagaac aaaacaaaat tactgcactc atcggtgctt caggatgtgg
     3241 taaatccact tttttgcgct gttttaatag aatgaatgat aaaattgcaa aaatcgatgg
     3301 tttagtggaa attgaaggaa aagatgttaa aaatcaagat gtagtagcct tgcgtaaaaa
     3361 tgtaggcatg gtttttcaac aacctaatgt ttttgtaaaa agcatttatg aaaacatctc
     3421 ttatgcacca aaacttcatg gtatgattaa aaacaaagat gaagaagaag ctttggtggt
     3481 ggattgcttg caaaaagtgg ggctttttga agaggttaaa gataaattaa agcaaaatgc
     3541 cctagctctt tcaggcggac aacaacaacg tctttgtatc gcaagagctt tagcgatcaa
     3601 acctaaactt ttgcttttag atgagccaac ttctgcactt gatcctataa gttcaggcgt
     3661 gattgaagag cttttgaaag aattaagcca taatctttct atgatcatgg ttacgcataa
     3721 tatgcaacaa ggcaaacgcg tagctgatta tacagcattt tttcacctag gtgagcttat
     3781 agaatttgga gaaagcaagg aattttttga aaatccaaaa caagaaaaaa ccaaggctta
     3841 cttaagcggt gcttttgggt gagatttatt ttttggaaat ttgatgatat aattaattaa
     3901 aaatttccaa aaaaaggttt aatatgatta taaaccaaat ttattctata gattcttgtg
     3961 atgatgtaga attaaatatc aaaaggggaa gtaaattaga atttagattg acttatgatg
     4021 atagtaaaga aatagaagct attgtttgta ttattccagg tggtgctgaa gatatgaata
     4081 gttatattta tattgatgat tatttgacta gaaattataa agttgctgtt attaatatta
     4141 actatcattg tataggaaat agacctcatt tgggttctag tttttatttg gatgatatag
     4201 ataaattcat tttagatact agtttaaagg ctataaattt aaaatgtata aatgtttatg
     4261 gtataaattc ttatgaaaat ctaaataatg cttttataag aatagatcaa gaaattcaaa
     4321 aattaaaatt aaatcaacaa ttacatcaaa actataagtt aaaaacacat gtaagttttt
     4381 taccatttaa aaatgaatat caaaattttg gtataatgca agctatggat attttaaatg
     4441 ctatttttta tataaaagaa aattctccat ttaaactaat gagggggggg ggtattagaa
     4501 cgattttgtt tggaaattca tatggcggat atttagcaaa tttatgtgca aaaatagctc
     4561 cttggagtat tgattttata ttagataatt cttcttttgt taatttgttt ggaaatattt
     4621 ttagacttat aggttttgga aaagaaatcg attttactag ata
//
LOCUS       DBBXPZ010000109         4329 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.111, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000109 DBBXPZ010000000
VERSION     DBBXPZ010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4329)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4329)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4329
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.111"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            17..457
                     /gene="fabZ"
                     /locus_tag="ACJFD7_001646"
     CDS             17..457
                     /gene="fabZ"
                     /locus_tag="ACJFD7_001646"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HGG0860421.1"
                     /translation="MIDVMQIQEILPHRYPFLLVDKITELKVKEVVLGYKNISISDHV
                     FMGHFPGHPIYPGVLILEGMAQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVR
                     PGDRLDYEMSVVKNRGNMWIFKGQAFVDGNLVAEAELKAMIVDK"
     gene            457..1248
                     /gene="lpxA"
                     /locus_tag="ACJFD7_001647"
     CDS             457..1248
                     /gene="lpxA"
                     /locus_tag="ACJFD7_001647"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HGG0860422.1"
                     /translation="MKKIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGA
                     RILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKG
                     DGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFV
                     KVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGTRRRFDKDEVDRLSRAFKTL
                     FRQGDLKENAKNLLENQESENVKKMCHFILETKRGIPVYRGKNNA"
     gene            1241..2464
                     /gene="clpX"
                     /locus_tag="ACJFD7_001648"
     CDS             1241..2464
                     /gene="clpX"
                     /locus_tag="ACJFD7_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HGG0860423.1"
                     /translation="MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEE
                     KEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQD
                     DDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILT
                     RLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVN
                     IPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA
                     LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAI
                     DGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKDYDIVITKEV
                     VKDNAKALLIKRKIS"
     gene            2476..3516
                     /gene="mreB"
                     /locus_tag="ACJFD7_001649"
     CDS             2476..3516
                     /gene="mreB"
                     /locus_tag="ACJFD7_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HGG0860424.1"
                     /translation="MILDQLIGFFSSDMGIDLGTANTLVLVKDKGIVINEPSVVAVER
                     ERYGSKAKILAVGKEAKDMVGKTPGNIEAIRPMKDGVIADFDMTEKMIRYFIEKTHRR
                     KSFLRPRIIISVPYGLTQVERKAVRESALSAGAREVFLIEEPMAAAIGASLPIQEPKG
                     NLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDMSIVNYVKEKYNLIIGERTGEEI
                     KITIGSAIQLPKELSMVVKGRDQVSGLLSRIELTSEDVREAMREYLKEIADALKMVLE
                     MMPPDLASDIVENGVVLTGGGALIRGFDKYLSEIVRLPVYIADEPLLAVAKGTGKALE
                     EISLLQQLTNEE"
     gene            3506..4255
                     /gene="mreC"
                     /locus_tag="ACJFD7_001650"
     CDS             3506..4255
                     /gene="mreC"
                     /locus_tag="ACJFD7_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HGG0860425.1"
                     /translation="MKNKIFYVLVLAFLVFISFYYGGIIKQNVLRVNDFVMGNFYNIK
                     DYLGKKISEHFNQANQIQQLKARNKELEDIAVKVTSFANQLNRILEDQNSTKYLPQVS
                     LTRVISYVQLNDYKKLWLDWSKIPVGKNRGLIYQGYTAGIAINKNGRAMALLQGDDQC
                     VFSVYIGKSKAPGLIQGEDGRIVVKFIPKWAKINTGDEILTSGLDNIFFSDIPVGIVN
                     RVNDEDMYQSVEVKPYVKISIPAYLYVVDNL"
BASE COUNT         1535 a          481 c          919 g         1394 t
ORIGIN      
        1 caaggttaat ttaataatga tagatgtaat gcaaattcaa gaaattttac cacaccgtta
       61 tcctttttta ctggtagata aaattacaga attaaaagtt aaagaagtgg tgctaggata
      121 taaaaacatc agtataagtg atcatgtttt tatgggacat tttccagggc atcctattta
      181 tcctggagtt ttgattttag aaggtatggc tcaaacaggt ggagttttag cttttgaaag
      241 tatggaagat aaagtggatc caaaaagtaa agtagtttat ttcacaggca tagatggagc
      301 aaaatttaga aatcctgtgc gtcctggaga taggcttgat tatgaaatga gcgtggttaa
      361 aaatcgtggt aatatgtgga tttttaaagg gcaagctttt gtagatggaa atttagttgc
      421 agaggccgag cttaaagcta tgatagtgga taaataatga aaaaaattca tccaagtgcg
      481 gtgattgaag agggtgcaca acttggtgac gatgttgtaa tagaagctta tgcttatgta
      541 agcaaagatg ctaaaatagg taataatgtt gtcatcaaac aaggtgctcg aattctttca
      601 gatacaacta taggtgatca ttctcgtgta ttttcttatg caatagtagg cgatattcct
      661 caggacatat cttataaaga agagcaaaaa agcggtgttg ttatagggaa aaatgcaact
      721 attagagaat ttgcaacgat aaattcaggt acagctaaag gagatggttt tactcgtata
      781 ggcgataatg cttttattat ggcttattgt catattgctc atgattgtct tttaggtaat
      841 aatattattt tagctaataa tgcaactttg gcaggacatg tagagcttgg agattttacg
      901 gttgtaggcg ggcttacacc tattcatcaa tttgtcaaag taggtgaggg ttgtatgata
      961 gcaggagcaa gtgcactttc tcaggatata gtaccgtttt gtttagcaga aggaaatcgt
     1021 gcaagtatta gaagtttaaa tttagtaggt actcgtcgtc gttttgataa agatgaagta
     1081 gatagactta gtagagcttt taaaacttta tttagacaag gagatttaaa agaaaatgct
     1141 aaaaatttgc ttgaaaatca agaaagtgaa aatgttaaaa aaatgtgcca ttttatatta
     1201 gaaacaaagc gtggaattcc tgtctatagg ggtaaaaata atgcctagaa aatgtagttt
     1261 ttgcaatgaa gtggagaatc cacaaagaag aattttagca aatgaaaatg atgatgcttt
     1321 tatttgtgaa tattgcgttg aaggtgctta tagtattatt tatggagaag aaaaagaatt
     1381 taaagaacct aaacaaagtc ataatacaga atttaaagat atcactccaa aagaattaaa
     1441 agcttattta gatcgttatg tcataggaca agatagagct aaaaaagttt ttagtgttgg
     1501 agtatacaat cattataaaa gactttttaa agctgaactt caagatgatg atacagagct
     1561 ttttaagtca aatattttac ttgttgggcc aacaggaagt ggaaaaactt tattggcgca
     1621 aactttagct aaatttttag atgtacctat agcaatttgt gatgcaactt ctttaactga
     1681 agcaggatat gtaggtgagg atgtagaaaa tattttaaca cgtcttttac aagctgcaga
     1741 tggagatgtg caaagagctc aaaaaggtat agtttttatt gatgagattg ataaaattgc
     1801 cagaatgagt gaaaatcgtt ctattactcg tgatgtaagt ggagagggtg tgcaacaagc
     1861 tttacttaag attatcgaag gaagtttggt aaatattcca ccaaaggggg ggagaaaaca
     1921 tccaaatcaa gagtttatac aaattgacac ttcaaatatt ttatttgttt gtggtggagc
     1981 ttttgatggt ttggaaacta tcttaaaaag aaaacttgga gataaagttg taggtttttt
     2041 tgatgatgca aaagaagaaa ataaagcttt acttgagaaa attgaacctg atgatttggt
     2101 tcattttggt ttgattcctg agcttatagg tcgtttgcat gtgattgcat ctttaaatga
     2161 gcttaatgaa gaagatatgg taagaatttt aactgaacct aaaaatgcca ttattaagca
     2221 atatcaaaag ctttttgcta ttgatggggt aaatttaaaa tttgaagaag atgctctaag
     2281 agctatcgca caacttgcat tggagagaaa aacaggggct agggggctta gaagtattat
     2341 agaagaaatg atggtagatt taatgtttga gttaccagag tataaagact atgatattgt
     2401 aataaccaaa gaagttgtta aagacaatgc aaaggcatta ttaataaaaa gaaaaataag
     2461 ttaaaaagga tagaaatgat attagatcaa cttataggat ttttttctag tgatatgggg
     2521 attgatttag gaacagctaa tacgctagtt ttggtaaaag ataagggtat agtgataaat
     2581 gagccttctg ttgtggcagt tgaaagagaa aggtatggtt ccaaagcaaa aattttagcc
     2641 gtaggtaaag aagctaaaga tatggtggga aaaactccag gcaatatcga agctattcgt
     2701 cctatgaaag atggtgtgat tgcagatttt gatatgactg aaaaaatgat ccgctatttt
     2761 atagaaaaaa cacaccgtag aaaaagtttt ttacgcccta gaattatcat ttctgttcct
     2821 tatggtttaa ctcaagtaga aagaaaagcg gtaagagaaa gtgctttaag cgcaggtgca
     2881 agagaggtat ttttgattga agagcctatg gcagcagcta ttggtgcaag tttacctata
     2941 caagagccta aaggaaattt ggtagtagat atagggggtg gaactactga gatcggagtg
     3001 atttctttgg gtggacttgt gatttcaaag tctattcgta cggctggaga taagcttgat
     3061 atgagtatag ttaattatgt aaaagaaaaa tacaatctta tcataggtga aagaacaggc
     3121 gaagagatca aaatcaccat aggttcagca atacaacttc caaaagaact ttctatggtg
     3181 gtaaaaggac gcgatcaagt aagtggactt ttaagtcgta ttgaacttac aagtgaagat
     3241 gtaagagaag caatgcgtga gtatttaaaa gaaattgctg atgctttaaa aatggttctt
     3301 gaaatgatgc cgcctgattt agcaagtgat atagtagaaa atggtgtagt tttaacaggt
     3361 ggtggagcat tgattcgtgg ttttgataaa tacttaagtg aaattgtacg tttgccagtt
     3421 tatatcgcag atgaaccgct tttagctgta gcaaaaggaa cgggtaaagc tttagaggaa
     3481 atttcattat tgcaacaatt aaccaatgaa gaataagatt ttttatgttc ttgtcttagc
     3541 ctttttggtt tttatatctt tttattatgg aggaattatc aagcaaaatg ttctccgtgt
     3601 taatgatttt gttatgggta atttttataa tattaaagat tatttgggaa aaaaaatttc
     3661 agaacacttt aatcaagcaa atcaaattca gcaactaaaa gctagaaata aagaattaga
     3721 agatattgct gtaaaggtaa ctagttttgc aaatcaatta aatcgtattt tagaggatca
     3781 aaattctaca aaatatttac ctcaagtttc tttaactaga gttatttctt acgttcaatt
     3841 gaatgattat aaaaaattat ggttagattg gagcaaaatt ccagttggta aaaatcgtgg
     3901 tttaatatat caaggatata ctgcaggtat agctattaat aaaaatggta gagcaatggc
     3961 tctcttacaa ggtgatgatc agtgtgtttt ttctgtttat ataggaaaat ccaaagctcc
     4021 aggtttaatc cagggtgaag atggcaggat tgtggttaaa tttattccaa aatgggcaaa
     4081 aattaatacc ggagatgaaa ttttaacaag tggacttgat aatattttct tttcagatat
     4141 acctgttggt attgtgaata gagttaatga tgaagatatg tatcaaagtg tagaagtaaa
     4201 gccttatgtt aagattagta ttcctgctta tttatatgta gtagataatt tataagtcaa
     4261 ggattagact ttttaaaaat tttctatatt tttgctaatt attatcactt tgtttaatgc
     4321 taaaaattt
//
LOCUS       DBBXPZ010000110         4216 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.112, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000110 DBBXPZ010000000
VERSION     DBBXPZ010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4216)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4216)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4216
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.112"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            69..2141
                     /locus_tag="ACJFD7_001651"
                     /pseudo
     CDS             69..2141
                     /locus_tag="ACJFD7_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002933079.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            2224..2820
                     /locus_tag="ACJFD7_001652"
     CDS             2224..2820
                     /locus_tag="ACJFD7_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HGG0860426.1"
                     /translation="MAFKNLKELSFEKSNYIKPKRFVYESNGRLCTWDFIESKDSVSV
                     LLYHKELESFIFVRQFRIPLWYHQMHDKDYVKDDDMGYTIELCSGLVDKKLSLEEIAK
                     EECIEELGYAPKNLEKIGDFYTGFGSGVSKQSFYFVEVDEKDKISSGGGVDDEEIEAV
                     YVKVQDFEKKCKNMIRTPLLDFAYMWFLKEKWGKLKII"
     gene            complement(2852..3949)
                     /locus_tag="ACJFD7_001653"
     CDS             complement(2852..3949)
                     /locus_tag="ACJFD7_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HGG0860427.1"
                     /translation="MFGSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQ
                     AALESKLKTDLLNVLLTGVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDELNHIA
                     NSINASLGNITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSN
                     AHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQ
                     LADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNAITIANTEDISKDIT
                     QHSIINKCEVAENASLDLFNVFKEMLDESDH"
     gene            complement(3959..4174)
                     /locus_tag="ACJFD7_001654"
     CDS             complement(3959..4174)
                     /locus_tag="ACJFD7_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HGG0860428.1"
                     /translation="MLHEYRELMSELKGKDAHFDKLFDRHNELDDMIKDAEEGRTSLS
                     SMEISTLKKEKLHVKDELSQYLANYKK"
BASE COUNT         1412 a          534 c          745 g         1525 t
ORIGIN      
        1 aagtattctt tttttatact tcaaaaatga ttttaaatat caaaataatt atttttaaag
       61 gaattaattt gactcaaatc aaaaatataa aatttaaaaa aagtttactg tgttttttaa
      121 ttttatctgg agctttgtta aaagcagaag aaaaatatca acttaatgat gttgtggtta
      181 gtgctagtgg ttttgaacaa gatttggttg atgcgcctgc tagtatttct atcattacaa
      241 aagaagagct tgaaaaaaag ccaattaagg atataggaga ggctatagga gatattccag
      301 gtgtagatgt gactatgaat aaaacaggca cttatgattt tagcatacga ggttttggta
      361 gttcttatac tctagtttta attgatggaa aacgtcaaag tgttgcaaat gggttttatg
      421 ataatggttt tagcggcagt gagtcaggat atctgccacc tttgtctatg atagagcgta
      481 ttgaggttat acgtggtcca gcttctacac tttatggcag tgatgctgta ggcggtgtgg
      541 ataaatatta tcactaagaa aaatcctgat aaaatcgaag caaatataga atttaatact
      601 cttttacaac agcactctaa tcactatggt aatgctgagg gatttaatgc ttatgtagca
      661 actcttttga ttgaagatat attatcaatt tctgcaaggt tgaagtatta tgataaggca
      721 gcttctgatt taaaatggcc tacaccggtt tggaataata acaatcaaag acctgataat
      781 taccaaattg ctagtcatag tccaggtgct tttactagtt taggttttgg ttctaggctt
      841 aattggacag tagatgataa aaataatata tattttgata tagagcgata tattaatgaa
      901 atttcagtga attctacaag tagtagggct attaaaagtg aaagacaact ttttaaggat
      961 aatattgttt taaatcatga tggtaactat gattttggtt caactaactc atatttacaa
     1021 tatggtagca ctaaggataa ggagctgcat agccaaattt gggtaggaga aggtaaggtt
     1081 gttttacctt ggaatttagg tcaatacggt aatttagtaa atacctttgg tgcaaggatt
     1141 gattatgaga tattaaaaat gatcaagcaa gcgcaggtag tcaaataaga ggtaaaaatc
     1201 ttgatcaaac cgcggttgcg ctttatgggg aaaatgagta ttttataacc gatgatttga
     1261 tttttactac aggtttgcgt tatatttata gtgatttgtt tgattctgaa tttacgccta
     1321 gggtttattt ggtttatcac ttaaatgata atatagcctt gaaaggaggt gtttcaaaag
     1381 gctataaaac tcctgctgcc aagcagttga caaatggata ttataattat gccaataata
     1441 atgcttattt tggaaaccct gacttaaaac cagaagaaag tataaattat gaattgggtg
     1501 ttgattttat ggtatttgat tttgcacatt attctattac aggatttatt actgatttta
     1561 caaatcaaat cagtagtgaa gatttaacag gtatgcaaaa tgatattaat tgtagcaatg
     1621 ccattgtttg taagcgtcct attaatcttg gaaaaacgca gactaaaggt atagaatttg
     1681 catttaatac caaaacttac aatggcttta gcctaaattc aagttatact tttatggata
     1741 atcgctacaa agatggtcaa aaaaattggt ttggtggtga tagaatagaa aatttaccaa
     1801 gacatatagc aatgttaaaa ttaaactatg agcgaggtaa atttagttcc tatataaaaa
     1861 cacgagcaag acttgatact atagctaaag caaaaggtgg cggtaatggt agtctgccat
     1921 ggtaaaaata taagcctttt tatatagtag atttagggat aaattataaa atcaataagc
     1981 aatctagctt aagttttgca gtgcaaaatc tttttgataa aaatttcttt gatccgcaag
     2041 ttacaagatg ggatggggct aatcctgctg gatatgcaaa tcgctatcaa gattatacag
     2101 aaggaagaag tttttggtta agttataaat atgattttta attttttaag gctttaatca
     2161 cctttatatt ttcaaaaaag caaaaataaa gtacaatgtg aaaaataaat aaaaggtttt
     2221 attatggcgt ttaaaaattt aaaagaactt tcttttgaaa aatcaaatta tattaagcct
     2281 aagagatttg tttatgaaag taatggtagg ctttgcactt gggattttat agaatctaaa
     2341 gatagtgttt cagtgctttt gtatcataaa gaattagaaa gttttatttt tgtacgccaa
     2401 tttcgtatac cactttggta tcatcaaatg catgataaag attatgtaaa agatgatgat
     2461 atgggctata ctatagagct ttgttctggg cttgtggata aaaaattatc tttagaggaa
     2521 atagcaaaag aagaatgtat agaagaacta ggatatgctc ctaaaaattt agaaaaaata
     2581 ggagattttt atacagggtt tggttcaggt gtaagcaagc aaagctttta tttcgtagaa
     2641 gttgatgaaa aagataaaat ttcttctgga ggtggagttg atgatgaaga gattgaagct
     2701 gtttatgtta aggtgcagga ttttgaaaaa aaatgtaaaa atatgataag aacgcctttg
     2761 cttgattttg cttatatgtg gtttttaaag gaaaagtggg gaaaattaaa gattatttag
     2821 gttaaacctt aaaaaggttc aacctaggat tttaatgatc tgactcatca agcatttctt
     2881 taaatacatt gaaaagatca agcgatgcat tttcagcaac ttcgcattta ttaattatgc
     2941 tgtgttgagt aatatctttg ctaatatctt ctgtatttgc tattgttata gcattattca
     3001 tattttcatg aactttttca tgtggctcgt taatttttaa gaagctttta ttttgcccaa
     3061 atctttcttt tcctgtgcta gcaagccatt ttcctaagcg acaagatgta tgatcggcta
     3121 attgctttcc tgatttggaa aaaatttctt tataaccatt taatttaaaa gctatatgat
     3181 ctagttttgc taaagatacg aaagcttctg aagcgatacc aactgcattt gaattagtag
     3241 aatgcgcttc atttactaag tgagtaaatt tttcggaaaa actcataata tgagcattag
     3301 aatctataga aattttttca acttgctcac tttgagtata catttcattt gcattttgct
     3361 ttagaaggtt gatattcatt tcaacttctg tggttgcttt ttgtgttttt tcagctagtt
     3421 ttcttacttc atcggcaaca acagcaaaac cacgcccatg ttcacctgcg cgtgcagctt
     3481 ctatggcagc gttaagagct aaaagattgg tttgatcgga aacatcttta attagattaa
     3541 ttacattagt aatttcatct acacttctat gcaatgttcc tgcaacatct cttgttttat
     3601 tggctgattc tgtaatattt cccaaagagg cattgataga attagcaata tggttaagtt
     3661 catccatttc agcaagagaa gttttagaat agctagagat aacttctgcc ttatttacat
     3721 tttctaacat atcgccttga ataatagtaa tattttttaa aaccccagtt aataaaacat
     3781 ttaaaagatc tgttttaagt ttagactcta aagccgcttg ttctaatgat gtaattttat
     3841 tttttaattc taaattttcc gattgaaatt tttcaatttt atgtgtaaga tttttatttt
     3901 cttcttcaag tttttgaaga tcagaatggt ttattttact tccaaacatt gttttgcctt
     3961 attttttata atttgctaga tattggctaa gttcatcttt tacatgaagc ttttcttttt
     4021 ttaaagttga aatttccatg ctgctaagag aagttctacc ttcttctgca tctttaatca
     4081 tgtcatcaag ttcattatga cgatcaaata gtttatcaaa atgagcatct ttacctttta
     4141 gctctgacat taattctcta tattcatgta gcataaactc tccttgtatt agtgaaattt
     4201 aaaattcatt taacaa
//
LOCUS       DBBXPZ010000111         4127 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.113, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000111 DBBXPZ010000000
VERSION     DBBXPZ010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4127)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4127)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4127
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.113"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(7..1227)
                     /gene="pgi"
                     /locus_tag="ACJFD7_001655"
     CDS             complement(7..1227)
                     /gene="pgi"
                     /locus_tag="ACJFD7_001655"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HGG0860429.1"
                     /translation="MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNL
                     IDESLAFIKDKEHIKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFN
                     KTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLH
                     QEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKK
                     DEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIA
                     LIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELL
                     NAQCNATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPG
                     VEVGKLILKNILNS"
     gene            complement(1221..2045)
                     /gene="galU"
                     /locus_tag="ACJFD7_001656"
     CDS             complement(1221..2045)
                     /gene="galU"
                     /locus_tag="ACJFD7_001656"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003983 - UTP:glucose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006011 - UDP-glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HGG0860430.1"
                     /translation="MLQTCIFPAAGYGTRFLPATKTLPKEMLPILTKPLIHYGVDEAL
                     EAGMENMGFVTGRGKRALEDYFDISYELEHQISGTKKEYLLDEIRSLINRCTFTFTRQ
                     NQMKGLGDAVLKGRPLVGDEAFGVILADDLCVNEEGLNVMAQMVKIYEKYRCTIIAVM
                     EVPKEQVSNYGVISGNFVEENLIMVNSMIEKPSPDEATSNLAIIGRYILTPDIFGILE
                     NTKAGKNGEVQLTDALLTQATNGMVLAYKFQGKRFDCGSVEGFVEATNYFYEKSKC"
     gene            complement(2127..4100)
                     /gene="acs"
                     /locus_tag="ACJFD7_001657"
     CDS             complement(2127..4100)
                     /gene="acs"
                     /locus_tag="ACJFD7_001657"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0016208 - AMP binding [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HGG0860431.1"
                     /translation="MLNQNNQELFKPSKEFSRNARIKNLCEYYDLCDEAKEDFEGFWK
                     RQALEKIEWFSPFSRVLNEDKAPFYKWFEGGTLNVSYQCLDRHMKTRRNKAALIFEGE
                     MGDYEVYTYRRLLHETCKAANLLKKFGVKKGDRVVIYMPMIPETAIVMLACARIGAIH
                     SVVFGGFSPEALRDRIIDAGAKLVVTADGAFRRGKPYMLKPAVDKALSEGCESVEKVL
                     IVIRNNEPIEYIKGRDYVYNELVKNESYKCEPEIMDSEDLLFLLYTSGSTGKPKGVMH
                     ASAGYILWAQMTMEWVFDIKDYDNYWCSADVGWITGHTYVVYGPLACGATTIMHEGTP
                     TYPNSGRWWRMIEEYQISKFYTSPTAIRMLHADAPNEPRKYDLSTLEVLGTVGEPINP
                     SAWKWFYDEIGGTKSPIVDTWWQTETGGHMITPLPGATPLKPGCATLPLPGIFAEVID
                     EEGNKKDEGEDGLLCITKPWPSMIRGIWGNDERYIESYFSQAKKDGKAVYFSGDGAFY
                     DKNGYITITGRTDDVVNVAGHRIGTAEIESAIAKHPSVAESAVVSILDTIKGESLFAF
                     VVLSPASSCDLGGAIETLKELNDILRVEIGPIAKIEKILYTPGLPKTRSGKIMRRILR
                     TIARGEEIKQDISTLEDSKVVETIVKLAKAEFE"
BASE COUNT         1306 a          851 c          547 g         1423 t
ORIGIN      
        1 ttttgattaa gaatttaata tattttttaa gatcaacttt ccaacttcca caccaggttg
       61 atcataggtg ttaatcccta gcataacacc gcaagttgaa gtaaaaagtt cataataata
      121 catcaaatat cccgcatgcc aagcatcaag tttttcaagt tctatcacat caacactcaa
      181 attttcagcg attaaagcgt gcatagttgc attacattga gcgtttaaaa gttcgtgaag
      241 attgacttta ttacttaaag aatctaaaaa tttaaaatga atatcaggga taataggtgc
      301 tttttgagcg tctttgattt ttaaaaaagt tacagtttta tttttaggtc catccataat
      361 gagttgtaaa aaactatgct gatctcttgc tccaatgagt gcaataggag ttaaacctat
      421 acgtttatag ccttgctttt tacctaaact ttcagcaata agctggatat accattcatt
      481 aaagccttta aaagcatcac tatatgaaaa aagtacattg atattggcat ttttgtgtgt
      541 gcaataatga taggcttttt gtaaaatttc atctttttta tgagtaaaaa aatcttcaaa
      601 acaagcttta gctccttcta aaagagcttt ggcattatag ccacaaaaac aaagcggaac
      661 tatacctacg gctgaaagta tgctaaaacg acctcctaca tttgcaggga taaaaaagca
      721 tttaatacct aaattttcac cttcttgatg aagttttgaa tccttatcgg taataaaaac
      781 aaagtatttt tttaattctt gcatatcaag tttaaaatgt tcaataagaa gtttaaaaag
      841 cgatacaact tctatagtgc tacctgtttt gctgatgatt aaaaacaaac tttcctcaag
      901 cttgattttt tctaaagtct tattaaaaga atgtgaactt gtgttatcga gtataaaaag
      961 ttctctttgg ttgctttttt cattaaaaag catatcacgc aaggctttta caccacaact
     1021 tgaaccaccc attcccacta aaacgatatt ttttatgtgt tctttgtctt tgataaaagc
     1081 caaactctca tcgattaaat tcaaacttgt atcaataaga tgataatacc ctatatctcc
     1141 actttttacc tcatcattaa tacgatttgc ataagaactt atagtgtgaa tttcactttg
     1201 cttaaaaaaa agtgtattgt ttaacattta cttttctcgt aaaaataatt tgtcgcttct
     1261 acaaagcctt ctacacttcc acaatcaaag cgttttcctt gaaatttata agctaaaacc
     1321 ataccattgg ttgcttgagt taaaagcgcg tcggtaagtt ggacttcacc attttttccc
     1381 gctttagtat tttctaaaat tccaaaaata tcaggagtta aaatatatct tcctatgata
     1441 gcaagattac ttgtagcttc atcaggactt ggtttttcta tcatagaatt aaccatgata
     1501 agattttctt ctacaaaatt tccagaaatt actccatagt ttgaaacttg ctcttttggt
     1561 acttccatca cagctatgat ggtgcagcga tatttttcat aaatttttac catttgagcc
     1621 ataacattta agccttcttc attaacacac aaatcatcag ccaaaattac gccaaaagct
     1681 tcatcgccaa ccaaaggtct accttttaaa accgcatcac ctaagccttt catttgattt
     1741 tgtcttgtaa aagtaaaggt acaacgattg atcaaagagc gaatttcatc aagtaagtat
     1801 tctttttttg tacctgaaat ttgatgttca agttcataag aaatatcaaa ataatcctcc
     1861 aaagctcttt ttccacgccc tgtgacaaat cccatatttt ccattcctgc ttctaaagct
     1921 tcatcaactc cataatggat caaaggcttg gttaagatag gtaacatctc tttaggtaaa
     1981 gtttttgttg caggtaaaaa tctcgtccca taacctgccg cagggaaaat acaagtttga
     2041 agcataaaaa tttcctttta tttttttatc attatagctt atttttatga attttcatgc
     2101 aactaggcaa agttcttttt accttgttat tcaaactctg ccttagctaa tttaacaatg
     2161 gtttctacta ctttagaatc ttcaagtgtt gaaatatcct gtttgatttc ttcacctctt
     2221 gctatagttc ttaaaattct tctcattatt ttaccacttc tagtttttgg caaacctgga
     2281 gtataaagaa ttttttctat tttagctata ggtcctattt ctactcttaa aatgtcatta
     2341 agttctttta aagtttctat agctccgcca agatcacaac tggatgcagg acttaaaacc
     2401 acaaaagcaa acaatgactc gcccttaatc gtatccaaaa tactcactac agctgattct
     2461 gctacacttg gatgtttagc aatagcgctt tcaatttcag ccgttcctat acgatgtcct
     2521 gcaacattaa ccacatcatc tgttcttcct gtgatggtaa tataaccatt tttatcataa
     2581 aaagcaccat cgccactaaa atatacagct tttccatctt ttttagcttg agaaaaataa
     2641 ctttctatat agcgttcatc attgccccaa attccacgaa tcatcgaagg ccaaggttta
     2701 gttatacaaa gcaacccatc ttcaccttca tcttttttat tgccttcttc atcaataact
     2761 tctgcaaaaa tccctggcaa aggcaaggtg gcacaacctg gttttaaagg agtggcgcct
     2821 ggtaaaggcg tgatcatatg cccacctgtt tctgtttgcc accaagtatc gactatagga
     2881 cttttagttc cccctatttc atcataaaac cacttccaag cactaggatt gataggctct
     2941 ccaaccgttc caagcacttc aagcgtactt aaatcatatt ttcttggctc attaggtgca
     3001 tcagcatgaa gcattcttat ggcagttggc gaagtgtaga atttgcttat ttgatactct
     3061 tctatcattc tccaccaacg cccagaattt ggataagtag gagttccttc atgcattata
     3121 gtcgttgctc cacatgctaa aggcccataa actacataag tatgtcctgt aatccaaccc
     3181 acatcagcac tacaccaata attatcataa tctttaatat caaaaaccca ttccatagtc
     3241 atttgtgccc aaagtatata tcctgcactt gcatgcataa ctccttttgg cttgcctgtt
     3301 gatcctgaag tgtaaagcaa aaacaacaaa tcctcactat ccataatttc gggttcacac
     3361 ttataagact catttttcac aagttcgtta taaacatagt cccttccttt aatatattct
     3421 ataggctcat tattgcgtat aactataagt actttttcta cactttcaca cccttcactt
     3481 aaagccttat ctactgcagg ttttaacata taaggtttgc cacgacgaaa agcaccatca
     3541 gccgttacta caagtttagc tcctgcatct ataattctat ctcttaaggc ttcaggagaa
     3601 aaccctccaa atactacact atgaatagcc ccaatccttg cgcaagctaa cattactata
     3661 gctgtttctg gaatcatagg catataaatt acaaccctat cgcctttttt tactccgaat
     3721 tttttaagca aattggccgc cttgcaagtt tcatgcaata atcttctata agtataaact
     3781 tcataatccc ccatttcacc ttcaaaaatc aaagcagctt tattgcgtct tgttttcata
     3841 tgacgatcaa gacattgata acttacattt aaagttccac cttcaaacca tttataaaat
     3901 ggagctttat cctcatttaa cactcttgaa aaaggcgaaa accactcgat cttctcaagt
     3961 gcttgtcttt tccaaaaacc ttcaaaatct tccttggctt catcgcataa atcatagtat
     4021 tcgcataaat tttttatacg agcattacga gaaaattctt tacttggctt aaaaagctct
     4081 tgattatttt gattaagcat aaaaactcct ttatggttat ttttaaa
//
LOCUS       DBBXPZ010000112         3890 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.114, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000112 DBBXPZ010000000
VERSION     DBBXPZ010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3890)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3890)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3890
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.114"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            15..3758
                     /locus_tag="ACJFD7_001658"
     CDS             15..3758
                     /locus_tag="ACJFD7_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HGG0860432.1"
                     /translation="MHFTLLNEKDFFNPYYRKKQIMQNEFDIFNKALMQYLERLESSQ
                     SENEDYLVANALSPFLTMLNFKTHIKTKQKGKSEIDLSISKDEFSKDLEVLIEAKKPN
                     SKEFITHTKVNSKALHETILYYFRNREYSFSLKFIIITDFYKFYIFKISEFEELFYKN
                     PSFKKLFEEFCNPNSLFKGNTEEFYKEVAKLIENSKENLKGFLIDLTFLKDKQKSNFK
                     NLASIYKTFHRDFLLNEFNPNDANSLNNAFYKELLYILGLCESKQNSKLIIAKSEESK
                     EEQGTFYTAINSKLKEENFETILKLLILWLNRILFLKLIESNLVRFNDDKNLKFLNFK
                     KIPDFDKLSELFFEVLAKEKSTRKKSEFAYLPYLNSSLFEKQSIENTLEISSLSNDLK
                     LFYYKNTVLKDDKCKAKKGQVGLLEYLFEFLDSFDFGSDDEQSEILSQKELISSSVLG
                     NVFEKLNGYKEGSFYTPSFITSYMCKESITKVVLDKFNAQFDLDVKNINELRKSLRKE
                     DKKAQKELLNSIKICDPAMGSGHFLVSALNVMLSIYDELNLFDEEFYLEVQNDEILIT
                     GRKGEFIEYKRPKTPKDKAHLIQQELFHTKKDIIENNLFGVDINPNSCEITKLRLWIE
                     LLKHSFYQSFDDETYHDLKTLPNIDINIKCGNSLVSYFETGKSLNHYPNIKERMGKYK
                     RIVKDYKEGFYTDKSRINQEIKNLKISFKNFCFADKFKKEMKGFNDKCEKYSKKYGNF
                     LAVDDENLKFFVSANLTLFDFDEKEATKEFTNLKKEYDNIFNLESNHPFEWRFEFPEI
                     LDDDGNFKGFDLIIGNPPYIRQEELKELKPHLAKNYKVYKGTSDIYTYFYELGFNVLK
                     DNGVLSYITSNKYTRAGYGEALREFLLKNVKFLEYTDLNGIKVFDSATVDTSILCFEK
                     SKSKDNKFKYLALSNEILKTCAYDIGLYKDFAEFSQNSLSKESFTFSDENTSALKAKI
                     ERIGTPLKEWYGLNINYGIKTGYNEAFIITTEKRNEILANCKDEAEKERTAKLIRKML
                     RGRDIKRYSYEWAGLWVIGTFPSLKLDIEQYPALKQYLSQFLPRIEQSGEKGCRKKTS
                     NKWFETQDNIAYYEEFEKEKIVYPNMNKEFIAFFDNEFFLLNQKCFILSHQSNNKKEL
                     LYLTALLNSNVNFYYFKQIGAKLGASGYEMSKIFVEKLPIPKINSKNQKIADELINLA
                     DEILKAKEQDKNANTQELENKINSLVYKLYNLTEEEIKIIEGK"
BASE COUNT         1565 a          559 c          609 g         1157 t
ORIGIN      
        1 tataaaggtt agaaatgcat ttcactttgc taaatgaaaa agattttttc aacccatact
       61 accgcaaaaa gcaaatcatg caaaatgagt ttgatatatt taacaaggct ttaatgcaat
      121 atctagaaag acttgaaagt tcgcaaagtg aaaatgaaga ttatcttgta gctaatgcac
      181 ttagtccatt tttaaccatg ttaaatttca aaactcacat caaaaccaag caaaaaggca
      241 aaagtgagat tgacttatcc atctctaaag atgagtttag taaagactta gaagttctta
      301 ttgaggctaa aaagccaaat tcaaaagaat ttatcactca tacaaaggta aattctaaag
      361 ccttacacga gactatttta tattatttta gaaatagaga gtatagtttt agcttaaaat
      421 ttattatcat cacagatttt tataaatttt acatttttaa aattagtgag tttgaagagc
      481 ttttttataa aaatccaagt tttaaaaaac tttttgaaga attttgtaat ccaaattcac
      541 ttttcaaagg taatactgaa gaattctata aagaagtagc caaactcata gaaaattcca
      601 aagaaaactt aaaaggcttt ttgattgact tgacattttt aaaagacaaa caaaaatcaa
      661 attttaaaaa cctagcaagt atttataaaa cttttcatag agactttttg ctaaatgagt
      721 ttaaccccaa cgatgcaaat tcactcaaca atgcttttta caaagagctt ttatatatct
      781 tagggctttg tgagagcaaa caaaactcaa aactcatcat cgcaaaaagt gaagaaagca
      841 aagaagagca aggcactttc tacaccgcta taaattctaa gcttaaagaa gaaaattttg
      901 aaaccatctt aaaacttttg atcttatggc ttaatcgcat tttgttttta aagcttatag
      961 agtcaaattt ggtgcgtttt aatgatgata aaaatttgaa atttttaaat ttcaaaaaaa
     1021 tccctgattt tgacaagctt agcgaacttt tctttgaagt cttagccaaa gaaaaaagca
     1081 cgagaaagaa aagcgaattt gcttatctac cttatctaaa ttcttctttg tttgaaaaac
     1141 aaagcataga aaacacactt gaaatttcaa gcttaagcaa tgacttaaag cttttttact
     1201 ataaaaacac cgtgctaaaa gatgataaat gcaaggctaa aaaaggacaa gtggggcttt
     1261 tggaatactt gtttgaattt ttggatagct ttgattttgg tagtgatgat gagcaaagcg
     1321 aaattttaag ccaaaaagaa ctcataagct caagcgtttt gggaaatgtg tttgaaaaac
     1381 tcaatggcta caaagaaggg agcttttaca cgccaagctt tatcacttct tatatgtgta
     1441 aagaaagcat cacaaaagtt gtgcttgata aattcaacgc tcaatttgat cttgatgtta
     1501 aaaatataaa cgaactaaga aagtctttaa gaaaagaaga caaaaaagca caaaaagagc
     1561 ttttaaactc tataaaaatt tgcgatcctg cgatgggaag tgggcatttt ttggtttctg
     1621 ctttaaatgt tatgttaagc atttatgatg agctaaatct ttttgatgaa gaattttatc
     1681 tagaagtgca aaacgatgaa attctcatca cgggtagaaa aggcgagttt atagagtata
     1741 aacgcccaaa aacacctaaa gataaagccc atcttatcca acaagaactt tttcacacta
     1801 aaaaagacat catagaaaac aatctttttg gtgtcgatat caacccaaac tcatgcgaga
     1861 ttacgaagct aaggctttgg atagagcttt taaaacatag tttttatcaa agctttgatg
     1921 atgagactta tcacgatctt aaaaccctgc caaacatcga tataaacata aaatgcggaa
     1981 attctttggt atcttacttt gaaacaggca aaagcctaaa ccactatcct aacatcaaag
     2041 aacgcatggg caaatacaaa cgcatagtaa aagactataa agaaggcttt tacacagata
     2101 aaagccgcat caaccaagag ataaaaaatc tcaaaatttc ttttaaaaat ttctgctttg
     2161 cggataaatt taaaaaagaa atgaaaggct ttaacgataa atgtgaaaaa tactctaaaa
     2221 aatacggaaa tttcttagcc gtagatgatg aaaatttgaa attctttgtt agtgcgaatt
     2281 tgactctttt tgactttgat gaaaaagaag ccacaaaaga atttacaaat cttaaaaaag
     2341 aatacgacaa tatctttaac ctagaaagca atcatccttt tgaatggcgt tttgaattcc
     2401 ctgaaatttt ggacgatgat ggaaatttca aaggctttga tctcatcatc ggcaatccac
     2461 cttatataag acaagaggaa cttaaagaac tcaagcccca tttagctaaa aattataagg
     2521 tttataaagg cacgagcgat atttatactt atttttatga actaggattt aatgttttaa
     2581 aagataatgg ggtattgagc tatatcactt ctaacaaata cacgcgtgca ggatatgggg
     2641 aagctttgcg tgaatttttg cttaaaaatg ttaagttttt agaatacact gatttaaacg
     2701 gcataaaagt ttttgatagt gctacagtgg atacttccat actttgtttt gaaaaatcaa
     2761 aaagcaaaga taataaattc aaataccttg ccctaagcaa tgaaatttta aaaacttgtg
     2821 cttatgacat tggcttatat aaggactttg cagaattttc gcaaaattct ttaagcaaag
     2881 aaagtttcac ttttagcgat gagaatacta gtgccttaaa ggctaagata gaacgcatag
     2941 gaactccgct taaagaatgg tatgggctta atatcaacta tgggataaaa acaggctata
     3001 atgaagcctt tatcatcact actgaaaaaa gaaatgaaat tttagcaaat tgcaaagatg
     3061 aagccgaaaa agaacgcacc gccaaactca tacgcaaaat gctacgcgga cgcgatataa
     3121 aaagatatag ttacgagtgg gcgggacttt gggtgatagg aacttttcca agtttaaaac
     3181 tcgatataga acaatatccc gcattaaaac aatatttatc tcaattttta ccacgcatag
     3241 aacaaagcgg agaaaaaggt tgtagaaaga aaactagcaa taaatggttt gaaactcaag
     3301 acaatatcgc ttattatgaa gaatttgaaa aagaaaagat agtgtatcca aatatgaata
     3361 aggaatttat agcgtttttt gacaatgaat tctttttgtt aaatcaaaaa tgttttatct
     3421 tatctcatca atcaaataat aaaaaagaat tgttatattt aacggcatta ctaaattcta
     3481 atgttaattt ttattatttt aagcaaattg gagcgaaatt aggtgctagt ggttatgaaa
     3541 tgagtaaaat atttgtagaa aaacttccta taccaaaaat aaattctaaa aatcaaaaaa
     3601 tagccgacga gcttataaat ttagccgatg aaattttaaa agccaaagaa caagacaaaa
     3661 acgcaaatac ccaagaacta gaaaacaaaa tcaattcttt ggtttataaa ctctataact
     3721 taactgaaga agaaataaaa atcatagaag ggaaataatg ggagaatttg acaaagaaca
     3781 agcaatagca gacatagctg aaaatttagg aatatctaaa gaatatgtaa attttgatga
     3841 aaacaagaaa atttatatca ttaaagacaa taataattta aaaaaaatac
//
LOCUS       DBBXPZ010000113         3842 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.115, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000113 DBBXPZ010000000
VERSION     DBBXPZ010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3842
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.115"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(38..1060)
                     /gene="selD"
                     /locus_tag="ACJFD7_001659"
     CDS             complement(38..1060)
                     /gene="selD"
                     /locus_tag="ACJFD7_001659"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004756 - selenide, water dikinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0001887 - selenium compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_except=(pos:complement(1010..1012),aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HGG0860433.1"
                     /translation="MQYKNQNLTHFVKAAGUAAKLSPGGLKTILNFMQKTPALLSDIG
                     NNEDASVYQISPDLALVQTLDFITPIVDSAYHFGAIAAANALSDVFAMGAEVINALNI
                     VGFDTCNHDLNILKELLEGANDKVKECNALVVGGHTIESTELFFGLSVTGKVHPSKFI
                     ANNTSKIGDCIILTKPLGTGILSTALKAQMLNQKHLDIMLKNMMELNYKASQIALKFH
                     PSAMSDVTGFGLLGHLKEMLNKNISFEIFESELPFLDGVKEYFNMGLIPAGAYKNLEF
                     IKELTPDLNEEKLLLCDPQTSGGLLISISEKDSLECLKKLEDENIQAKIIAKVVNKQE
                     NDIIIS"
     gene            complement(1070..1642)
                     /gene="yedF"
                     /locus_tag="ACJFD7_001660"
     CDS             complement(1070..1642)
                     /gene="yedF"
                     /locus_tag="ACJFD7_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HGG0860434.1"
                     /translation="MKIDCRNLSCPQPIVETKNALEKLQENEILEIVLNSIISKNNVV
                     KFLNSLNLNPVVDENAQEFCIKVQKKNFDSSEVNIHDYNVLFLKTDKVGEGELGQNLL
                     VGFLSTLKNLDHAPSKILCVNESVLINVDENHKAHLAMKELENLGIEIISCGACLEFF
                     NKSKELKIGNIGNAYEILNELFGKAKIITL"
     gene            complement(1753..>3842)
                     /gene="ccaA"
                     /locus_tag="ACJFD7_001661"
     CDS             complement(1753..>3842)
                     /gene="ccaA"
                     /locus_tag="ACJFD7_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aspartate chemotaxis receptor CcaA"
                     /protein_id="HGG0860435.1"
                     /translation="NIGLKLIFSVAAVVVIGLVILISLITKQVSQNITKNTEDILASI
                     TKEYATQTQGIFGEMIALNKSISGTLTEMFRSTSKEDLDIDNITNIITNTFDNSAYSN
                     FTYLYLIDPPEYFKEESKFFNTQSGKFVMLYADEEKDNKGGIKAIQASDEIANLQVVQ
                     DILKKAKYGENKVYIGRPIKMNLEGQDFDAVNVAMPIFDRKNQVVGVIGMTLDFSDIA
                     TYLLDPKGQKYDGELRVLLNSDGFMAIHPNKNLVLKNLKDINPNKGAQETYKAISEGK
                     NGVFNYIASDGDDSYAAINSFKVQDSSWAVLVTAPKYSVFKPLKKLQLIILGASFIFI
                     FVVLGVVYYCVRKIVASRLPVILSSLESFFRFLNHEKIEPKAIEIRANDELGAMGRII
                     NENIEKIQISLEQDQNAVDESVQTAREIEKGNLTARITKNPINPQLVELKNVLNRMLD
                     VLQSKIGSNMNEINRVFDSYKALDFSTEVFNAKGEVEITTNILGKEIKKMLLASSNFA
                     KDLANQSEELKNSMQKLADGSNAQASSLEQSAAAVEEINSSMQNVSGKTVEVASQADD
                     IKNIVNVIKDIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAERTGKSLSEIE
                     ANINILVQSVNEVAESVKEQTAGITQINDAIAQLETVTKENVEVANVTNNITNEVNQI
                     AAAILEDVNKKRF"
BASE COUNT         1277 a          656 c          468 g         1441 t
ORIGIN      
        1 ataaaaaaaa ttttaatggg tatataagta acaaaaatta agaaatgata atatcatttt
       61 cttgcttatt tacaacctta gcaataattt tagcttgaat attttcatct tctagttttt
      121 ttaaacattc taaggaatct ttttcactta tagaaattaa aagtcctcct gaagtttgtg
      181 gatcacaaag taataatttt tcttcattta aatcaggggt aagttctttt ataaattcta
      241 aatttttata agctccagca ggaattaaac ccatattaaa atactctttt actccatcta
      301 aaaaaggaag ttcactttca aaaatttcaa aagaaatatt tttatttagc atttctttta
      361 aatgtcctaa aagtccaaaa cctgtaacat cactcatggc acttggatga aatttaagag
      421 caatttgact ggctttataa tttaactcca tcatgttttt aagcattata tctaaatgtt
      481 tttgatttaa catttgcgcc tttaaagctg tacttaaaat tcctgttcct aaaggcttgg
      541 ttaaaatgat acaatctcca attttagaag tattattagc aataaattta ctaggatgta
      601 cttttcctgt aacactaagt ccaaaaaaaa gctcggtgct ttctatagta tggccaccca
      661 cgactaaagc attacattct ttaactttat catttgcacc ttctaaaagc tcttttaaga
      721 tgtttaaatc atgattgcaa gtatcaaaac ctactatatt taaggcatta attacctctg
      781 cacccatagc aaaaacatcg cttaaagcat ttgctgcagc aatagcacca aaatgataag
      841 cactatctac tataggagtg ataaaatcaa gcgtttgcac caaagctaaa tcggggctga
      901 tttgatatac gcttgcatct tcattatttc cgatatcact aagtaaagca ggagtttttt
      961 gcatgaaatt taaaattgtt ttaagaccac ccgggcttaa tttcgctgct cagcctgctg
     1021 ctttaacaaa atgcgttaaa ttttgatttt tatattgcag tgtttttcct tatagagtaa
     1081 tgatttttgc tttaccaaaa agctcgttta aaatttcata agcattgcct atatttccta
     1141 ttttaagttc tttgctttta ttaaaaaatt ctagacaagc tccacaactt atgatctcaa
     1201 tacctaaatt ttcaagttct ttcatagcta aatgtgcttt atgattttca tcaacattga
     1261 ttaaaacact ttcatttacg caaagaattt tacttggagc atgatctaaa ttttttaagg
     1321 tacttaaaaa tcctacaagt aaattttgtc ccaattcacc ctcacccact ttgtcggttt
     1381 ttaaaaataa aacattataa tcgtgaatat ttacttcact agaatcaaaa ttcttttttt
     1441 gtactttgat gcaaaactct tgtgcatttt catctacaac agggtttaaa tttaaagagt
     1501 taagaaattt tacaacatta ttttttgaaa taatagaatt taaaacaatt tctaaaattt
     1561 cattttcttg aagtttttca agagcgtttt ttgtttcaac tataggctga ggacaagata
     1621 gattgcgaca atcaattttc attatttttc cttgatatta gctttgaaaa ataatattat
     1681 tttattactt gttttgtgtt taaaaatttt aaataatata gaaaaaattt aaaagctcaa
     1741 aaatgagctt ttttaaaatc tttttttatt cacatcttca agaattgccg cagcaatttg
     1801 attgacttca tttgttatat tattggtgac atttgcaact tcgacatttt ccttagttac
     1861 agtttcaagt tgtgctatag catcgttaat ctgtgtgatt cctgctgttt gttcttttac
     1921 agattctgct acttcattta cgctttgaac aagtatatta atatttgcct cgatttcaga
     1981 taaggatttt cctgttcttt ccgcaagctg tcttacctca tctgcaacaa ctgcaaaacc
     2041 acgcccatgt tctccagcac gtgcagcttc aatagctgca tttaaagcaa gaagattcgt
     2101 ttgctcagcg atatctttaa tcacattgac aatatttttt atatcatcag cttgtgaagc
     2161 aacctcaact gtttttccac ttacattttg catagaagaa ttaatctcct ccacagctgc
     2221 agccgattgt tctaaagaac tcgcttgtgc attagagcca tcagcaagtt tttgcataga
     2281 attttttaac tcttctgact gattggctaa atctttagca aaatttgaag aagccaaaag
     2341 catcttttta atttctttgc ctaaaatatt agttgtaatc tcaacttcac ctttagcatt
     2401 aaatacttct gtactaaaat caagagcctt ataactatca aaaactctat taatttcatt
     2461 catattagaa ccaattttac tttgtaaaac atcaagcatc ctattaagaa catttttaag
     2521 ttctactaat tgaggattta taggattttt agtaattctt gcagttaaat tacccttttc
     2581 gatttctcta gcagtttgca ccgattcatc tacagcattt tgatcttgtt ctaaagatat
     2641 ttgaatcttt tcaatatttt catttatgat tcttcccatt gctcctagct catcattagc
     2701 acgaatttca atagccttag gttcaatttt ttcatgattt aaaaaacgga aaaatgattc
     2761 taaagaacta agaatcacag gcaatctaga tgcgacaatt tttcttacgc aataataaac
     2821 cactcctaaa acaacaaaaa taaaaataaa agatgcacca agaataatta attgtaattt
     2881 ttttaagggt ttaaataccg aatatttagg agcagttacc aaaactgccc aagaactatc
     2941 ttgcacttta aaactattaa tcgcagcata agaatcatca ccatcagaag ctatatagtt
     3001 aaaaactcca ttttttcctt cacttatggc cttataagtt tcttgtgcac ctttattagg
     3061 attgatatct tttaaatttt ttaaaactag atttttattt ggatgtatcg ccataaaacc
     3121 atctgaattt aaaagaactc ttaattcacc atcatatttt tgacctttag ggtctaaaag
     3181 ataagtagca atatctgaaa aatctaaagt catgcctatg acacctacaa cttgattttt
     3241 tcgatcaaaa ataggcatag caacatttac agcatcaaaa tcttgacctt ctaaattcat
     3301 cttaatagga cggcctatat atactttatt ttccccatat tttgcttttt ttaatatatc
     3361 ttgcacaact tgcagattag ctatttcatc actagcttgt attgctttta ttccgccttt
     3421 attatccttt tcttcatcag cgtaaagcat aacaaatttt ccactttgag tattaaaaaa
     3481 tttactctct tctttaaagt attctggcgg atcaataaga tataaataag taaaattaga
     3541 ataagcacta ttatcaaaag tattggttat aatatttgtt atattgtcta tatctaaatc
     3601 ttctttagag gttgatctaa acatttctgt taaagtacct gaaatacttt tatttaaagc
     3661 gatcatttcc ccaaaaattc cttgagtttg agtagcatat tctttcgtga tagaagcaag
     3721 aatatcttct gtatttttgg taatattttg acttacttgt tttgtgatta atgaaattaa
     3781 aataacaagt ccaataacaa caacagctgc cacagaaaaa ataagtttta aacctatatt
     3841 ta
//
LOCUS       DBBXPZ010000114         3840 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.116, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000114 DBBXPZ010000000
VERSION     DBBXPZ010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3840
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.116"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..870
                     /locus_tag="ACJFD7_001662"
     CDS             <1..870
                     /locus_tag="ACJFD7_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HGG0860436.1"
                     /translation="DMEIFLDLLNTQSPTHTANNFSITQPNVSIVIKNLENKFDGILF
                     ERLGKKLLPTPKALELGKNWLKIIQAYYQSLEKLNDESMLLGEIKIASTQSISEHFLA
                     PILFDFKAEFKNIEIRSQTQNSKECLNLLKNGNIEFAIIEAELDPALVEYENLEINFW
                     QDDELIVATSDKKLNEKEFYIDELLEQKWILREVGSGLRDKFLNEIGASSKKLNIFLE
                     LDRMAAIKELVLQKKAISIFSKKSIEKELKNSTLYEIKLKNIDLKRKFYTLKRKNYNF
                     NRALEKFEKIFKS"
     gene            950..2818
                     /gene="rpoD"
                     /locus_tag="ACJFD7_001663"
     CDS             950..2818
                     /gene="rpoD"
                     /locus_tag="ACJFD7_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HGG0860437.1"
                     /translation="MNAKTQEAELEELFQENAKDYITYEKLVKYLTKQPSASTAKKVQ
                     ALMKKHKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRS
                     DSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLI
                     NRERRVKELFKSFDDEEKSDDKLDELDIDEDEENETELESDEENTKKNSKKEDERTLK
                     VIEKFKALEKAKKDWLKTSKDKESGDELLDKLSIAFKKNILKEKLMDLGPTSKLISEI
                     VKSMETALKSDEEFDKELKRLEYRLPMFSDELKKRHADILKDITKLSKEEITERALET
                     TMVSTYMEIKKLFQTKEASEKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRL
                     VVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIA
                     DQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITK
                     EPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIR
                     MRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEGWK"
     gene            complement(2834..3346)
                     /locus_tag="ACJFD7_001664"
     CDS             complement(2834..3346)
                     /locus_tag="ACJFD7_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HGG0860438.1"
                     /translation="MKKIYIIRHAKASKSEDIDDFERKLTKSGKEDLKKLFKNLASHE
                     IHPDLVLSSPAVRTAKTAKKIAKFYNFDKNRICFDERLYLCNVENLLKILQDIDDEFN
                     EVFLVGHNPSLMELGELLSSLCLASFPTSSILCLEFDIKEFKNLKKHSGKLVFFEHVR
                     KLKEEKDLGF"
     gene            complement(3343..>3840)
                     /locus_tag="ACJFD7_001665"
     CDS             complement(3343..>3840)
                     /locus_tag="ACJFD7_001665"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HGG0860439.1"
                     /translation="FLNILCYFLISYDYYNILGLNILFFNGAYWQLLSSMFLHGNLTH
                     LILNMIVLFQFGRMLETYLGALCFIFIYFIGGLLCSLLSVFYVYFDFKYFGENINVIG
                     ASGAICVLMGFYAVIDKNSTKGLIVAILLMSFVPLLMGVNVAWYGHIFGFMCGYILAK
                     IKEVK"
BASE COUNT         1655 a          554 c          548 g         1083 t
ORIGIN      
        1 gatatggaaa tatttttaga tcttttaaac actcaaagtc caactcatac agccaacaat
       61 ttttccataa ctcaacctaa tgtttcaata gtaattaaaa atttagaaaa taaatttgat
      121 ggcattttat ttgaaagact tggaaaaaaa ctcttaccta caccaaaagc tttagaacta
      181 ggaaaaaatt ggttaaaaat tatacaagcc tactaccaaa gcttagaaaa attaaacgat
      241 gaaagtatgc tcttagggga aataaaaata gcctcaactc aaagcatttc tgaacatttt
      301 ttagctccta ttttatttga ttttaaggca gaatttaaaa acatagaaat tcgctctcaa
      361 acgcagaatt caaaagaatg tttaaattta ctaaaaaacg gaaatataga atttgcaatc
      421 attgaagcag aacttgatcc agctttagtg gagtatgaaa atttagaaat aaatttttgg
      481 caagatgatg aacttatagt agctacaagt gataaaaaac tcaatgaaaa agaattttat
      541 atcgatgaac ttttggaaca aaagtggatt ttaagagaag taggctcagg cttaagggat
      601 aaatttttaa acgaaattgg tgcaagctca aaaaaactta atatttttct tgaacttgat
      661 agaatggctg cgattaaaga acttgtttta caaaaaaaag caatctctat tttttccaaa
      721 aaaagcatag aaaaagaatt aaaaaattca acactttatg aaattaaatt aaaaaatatc
      781 gacctaaagc gtaaatttta taccttaaaa agaaaaaatt ataattttaa cagagcttta
      841 gaaaaatttg aaaaaatatt caaatcataa acataataac cgatttatat agaaagttaa
      901 gcaattttta gataaaatcc aaagcttata taaatttcaa ggataatcaa tgaacgccaa
      961 aactcaagaa gctgaattag aagaattatt tcaagaaaat gcaaaagatt acatcacata
     1021 tgaaaaattg gtaaaatatc ttacaaaaca accaagtgca tcaaccgcta aaaaagtgca
     1081 agcattaatg aaaaaacaca aagtgcaact tttttcagca gctgaaattg cacaaatgaa
     1141 aaacatagaa gatgcaaaaa gacttcaaga agaaaaacaa aaactccaag atacaagcct
     1201 tgagaacgaa tttgatttag ccaatgaaaa cgatttatta gaatggagta gatcagactc
     1261 tcctgttcgt atgtatttaa gagaaatggg acaaattgct ttattaaaca aagatgaaga
     1321 aattgaaatt tccaaaaaaa tagaacttgg cgaagatatt atcattgatg ctttttgttc
     1381 tgtgccttat ttgatagatt ttattttaga ttataaagaa cctttaataa acagagaaag
     1441 aagggtaaaa gaactattta aaagctttga cgatgaagaa aaaagtgatg ataaacttga
     1501 tgaacttgat atagatgaag atgaagaaaa cgaaacagaa ttagaatcag acgaagaaaa
     1561 tactaaaaaa aacagcaaaa aagaagatga aagaacttta aaagttatag aaaaatttaa
     1621 agctctagaa aaagctaaaa aagattggct aaaaacatcc aaagacaaag aaagtggaga
     1681 tgagctttta gataaattaa gcattgcgtt caaaaaaaat attttaaaag aaaaattaat
     1741 ggatctaggc cctacttcaa aacttattag cgaaatcgta aaatcaatgg aaactgcact
     1801 aaaaagtgat gaagaatttg acaaagaact taagcgttta gaataccgct tacctatgtt
     1861 ttctgatgaa cttaaaaaac gccatgcaga tattttaaaa gatattacaa aattgagcaa
     1921 agaagaaatc acagagcgag ctttagaaac aaccatggta agcacttata tggaaattaa
     1981 aaaactattt caaactaaag aagccagtga aaaaagcttt gatcttgaaa aatcacgctt
     2041 aaaagaaatt ttagagcaaa ttaaacgcgg taaaaaaatc tctgatgaag caaaaggaag
     2101 aatggcaaaa tcaaacttgc gccttgttgt aagcatagct aaacgctaca caaatcgtgg
     2161 tctgcctttc ttagacctta tccaagaagg aaatataggt ttgatgaaag ctgtggataa
     2221 atttgaatac aaaaggggtt ataaattttc cacttatgca acttggtgga tcaggcaagc
     2281 tatttcaagg gctatagctg atcaagcaag aaccataaga attccaatcc atatgataga
     2341 aaccatcaat caaattaaca aaattatccg cgaacatcta caaaaagatg gaaaagaacc
     2401 tgatgtcagt gttatagcta aagaagtagg tttaagcgta gataaggtta aacaagttat
     2461 taaaatcaca aaagaaccaa tttctcttga agctccaata ggaaatgaag atgatggtaa
     2521 atttggagat tttgttgaag atagaaattc actttctcca atggatcata tcttaaagga
     2581 tgatttaaaa gaacaaattg atgaagtttt agatcaatta aacgatagag aaaaagcggt
     2641 aattcgtatg cgttttggtt taatggatga tgaaagtgat agaactttag aggaaattgg
     2701 aaaggaactt aatgtcactc gagaaagagt gagacaaata gaaagctcag ctataaaaaa
     2761 actcaaacac cctaaagtag gaagaaaact aaaaaattat atagaaggtt ggaagtaaga
     2821 gtcaatctcc ttactaaaaa cccagatctt tttcttcttt taacttgcgt acatgttcaa
     2881 aaaaaactaa ttttccgcta tgttttttta aatttttaaa ttccttaata tcaaattcta
     2941 aacacaagat agaagaagtt ggaaaagaag ctaaacatag cgaacttaat aactctccaa
     3001 gctccattaa actaggatta tgacccacta aaaatacttc attaaactca tcatcaatat
     3061 cttgcagaat ttttagcaaa ttttcaacat tgcaaagata caatctttca tcaaaacaaa
     3121 ttctattttt atcaaaatta taaaatttgg ctattttttt cgctgtttta gcggttctaa
     3181 cagcaggact tgatagcacc aaatcaggat gaatttcatg cgaagcaaga tttttaaaaa
     3241 gtttttttaa atcttccttt ccactcttag taagttttct ttcaaaatca tcgatatctt
     3301 cactcttact tgcttttgca tgtcttataa tataaatttt tttcatttta cctcttttat
     3361 tttagctaaa atataaccac acataaaccc gaaaatatga ccataccaag caacatttac
     3421 ccccataagc aatggcacaa aactcataag taaaattgcc actataagtc cttttgtgct
     3481 atttttatca ataacagcat aaaagcccat taaaacacaa attgcaccac tagcgcctat
     3541 gacatttata ttttctccaa aatatttaaa atcaaaatac acataaaaaa cacttaaaag
     3601 tgagcacaac aatccgccaa taaaataaat aaaaataaaa cacaaagcac ccaaataagt
     3661 ttctaacata cgcccaaatt gaaacaaaac tatcatattt aatataagat gagttaaatt
     3721 tccatgtaaa aacattgaac ttaaaagctg ccaataagct ccattaaaaa ataaaatatt
     3781 caaaccaagg atattgtaat aatcataaga aatcaaaaaa taacataaaa tatttaaaaa
//
LOCUS       DBBXPZ010000115         3823 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.117, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000115 DBBXPZ010000000
VERSION     DBBXPZ010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3823)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3823)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3823
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.117"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            47..1087
                     /gene="neuB"
                     /locus_tag="ACJFD7_001666"
     CDS             47..1087
                     /gene="neuB"
                     /locus_tag="ACJFD7_001666"
                     /EC_number="2.5.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0016051 - carbohydrate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate synthase"
                     /protein_id="HGG0860440.1"
                     /translation="MKEIKIQNIIISEEKAPLVVPEIGINHNGSLELAKIMVDAAFSA
                     GAKIIKHQTHIVEDEMSKAAKKVIPGNAKISIYEIMQKCALDYKDELALKEYTEKLGL
                     VYLSTPFSRAGANRLEDMGVSAFKIGSGECNNYPLIKHIAAFKKPMIVSTGMNSIESI
                     KPTVKILLDNEIPFVLMHTTNLYPTPHNLVRLNAMLELKKEFSCMVGLSDHTTDSLAC
                     LGAVALGACVLERHFTDSMDRSGPDIVCSMDTKALKELIMQSEQMAIMRGNNESKKAA
                     KQEQVTIDFAFASVVSIKDIKKGEVLSMDNIWVKRPGLGGISAAEFENILGKKALRDI
                     ENDTQLSYEDFA"
     gene            1084..2208
                     /gene="neuC"
                     /locus_tag="ACJFD7_001667"
     CDS             1084..2208
                     /gene="neuC"
                     /locus_tag="ACJFD7_001667"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008761 - UDP-N-acetylglucosamine
                     2-epimerase activity [Evidence IEA];
                     GO_process: GO:0006047 - UDP-N-acetylglucosamine metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase"
                     /protein_id="HGG0860441.1"
                     /translation="MKKILFITGTRADYSKIKSLMYRVQNSSEFELYIFATGMHLSKN
                     FGYTVKELYKNGFKNIYEFINYDKYYQTDKALATTIDGFSRYVNELKPDLIVVHGDRI
                     EPLAAAIVGALNNILVAHIEGGEISGTIDDSLRHAISKLAHIHLVNDEFAKRRLMQLG
                     EDEKSIFIIGSPDLELLNDNKISLSEAKKYYDINYENYALLMFHPVTTEITSIKNQAD
                     NLVKALIQSNKNYIVIYPNNDLGFELILQSYEELKNNPRFKLFPSLRFEYFITLLKNA
                     DFIIGNSSCILKEALYLKTAGILVGSRQNGRLGNENTLKVNANSDEILKAINTIHKKQ
                     DLFSAKLEILDSSKLFFEYLQSGEFFKLNTQKVFKDIKHA"
     gene            2201..2695
                     /locus_tag="ACJFD7_001668"
                     /pseudo
     CDS             2201..2695
                     /locus_tag="ACJFD7_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868608.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,4-N-acetylgalactosaminyltransferase"
     gene            2790..3077
                     /locus_tag="ACJFD7_001669"
     CDS             2790..3077
                     /locus_tag="ACJFD7_001669"
                     /inference="COORDINATES: protein motif:HMM:NF018059.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860442.1"
                     /translation="MHRGGDQLLIKRRNSSFIERRVSKKSQWIDPKGLIEELYSEQQV
                     LSQGVKILQAPLLQWHFPALKYRRNDYQQYLDILSLEEFQAFHRKSKEAKK"
     gene            3142..3807
                     /locus_tag="ACJFD7_001670"
     CDS             3142..3807
                     /locus_tag="ACJFD7_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase family
                     protein"
                     /protein_id="HGG0860443.1"
                     /translation="MSLAIIPARGGSKGIKNKNLVLLNNKPLIYYTIKAALNAKSISK
                     VVVSSDSDEILNYAKNQNVDILKRPISLAQDNTTSDKVLLHALKFYKDYEDVVFLQPT
                     SPLRTNIHIDEAFNLYKNSNANALISVSECDNKILKAFVCNDCGDLAGICNDEYPFIP
                     RQKLPKTYMSNGAIYILKIKEFLNNPSFLQSKTKHFLMDESSSLDIDCLEDLKKAEQI
                     WKK"
BASE COUNT         1465 a          525 c          667 g         1166 t
ORIGIN      
        1 attaagatta cctagtgata taaagcatta tttcaaagga aaataaatga aagaaataaa
       61 aatacaaaat ataatcataa gtgaagaaaa agcaccctta gtcgtgcctg aaataggcat
      121 taatcataat ggcagtttag aactagctaa aattatggta gatgcagcct ttagcgcagg
      181 tgctaagatt ataaagcatc aaacccacat cgttgaagat gagatgagta aggccgctaa
      241 aaaagtaatt cctggtaatg caaaaataag catttatgag attatgcaaa aatgtgcttt
      301 agattataaa gatgagctag cacttaaaga atacacagaa aaattaggtc ttgtttatct
      361 tagcacacct ttttctcgtg caggtgcaaa ccgcttagaa gatatgggag ttagtgcttt
      421 taagattggt tcaggtgagt gtaataatta tccgcttatt aaacacatag cagcctttaa
      481 aaagcctatg atagttagca caggaatgaa tagtattgaa agtataaaac caactgtaaa
      541 aatcttatta gacaatgaaa ttccctttgt tttaatgcac acgaccaatc tttacccaac
      601 cccgcataat cttgtaagat taaacgctat gcttgaatta aaaaaagaat tttcttgcat
      661 ggtaggctta agcgaccaca caacagatag tcttgcgtgt ttaggtgcgg ttgcacttgg
      721 tgcttgtgtg cttgaaagac attttactga tagtatggat agaagtggcc ctgatatagt
      781 ttgttctatg gatacaaagg ctttaaaaga gctaattatg caaagtgagc aaatggctat
      841 aatgagagga aataatgaaa gcaaaaaagc agctaagcaa gaacaagtta caattgattt
      901 tgcctttgca agcgtagtta gtattaaaga tattaaaaaa ggcgaagttt tatctatgga
      961 caatatctgg gttaaaagac ctggacttgg tggaattagt gcggctgaat ttgaaaatat
     1021 tttaggcaaa aaagcattaa gagatataga aaatgatact cagttaagct atgaggattt
     1081 tgcgtgaaaa aaatcctttt tataacaggt actagggctg attattctaa gattaaatct
     1141 ttaatgtaca gggtgcaaaa ctcaagcgaa tttgagcttt acatctttgc aacaggaatg
     1201 cacttaagca aaaattttgg ctatacagtt aaagagcttt ataaaaatgg ctttaaaaat
     1261 atttatgaat ttataaatta tgataaatat tatcaaactg ataaggcttt agccactaca
     1321 attgatggat tttcaaggta tgtaaatgag ttaaaacctg atttaatcgt agtacatgga
     1381 gatagaatcg agcctttagc agcagctatt gttggagcat taaataatat cttagtagcg
     1441 catattgaag gcggagagat ttcaggaact attgacgata gcttacgcca cgctatatca
     1501 aaactagcac atattcattt agtaaatgat gagtttgcaa aaaggcgttt aatgcagctt
     1561 ggagaagatg aaaaatctat ttttatcata ggttcgcctg atttagaact tttaaacgat
     1621 aataaaattt cacttagcga agcaaaaaaa tattatgata taaattatga aaactacgct
     1681 ttgcttatgt ttcatcctgt tacaactgaa attactagca ttaaaaatca agcagataat
     1741 ttagtaaaag cactgataca aagtaacaaa aattatattg ttatttatcc aaataatgat
     1801 ttaggttttg aattaatctt gcaaagctat gaagagctta aaaataaccc tagatttaag
     1861 ctttttccat cgcttagatt tgagtatttt ataactttgt taaaaaatgc tgattttata
     1921 ataggtaatt caagttgtat tttaaaagag gccttatact taaaaacagc aggaatttta
     1981 gttggctcaa ggcaaaatgg aagacttggc aatgaaaata cactaaaagt taatgcaaat
     2041 agtgatgaaa tactaaaagc tattaatacc attcataaaa aacaagattt atttagcgcc
     2101 aagttagaga ttttagatag ctcaaaatta ttttttgaat atttacaaag cggagaattt
     2161 tttaaactta acacacaaaa agtttttaag gatataaaac atgcttaaaa aaatcatttc
     2221 tttatataaa agatactcga tttctaaaaa attggtttta gataatgagc atttcattaa
     2281 ggaaaataaa aacatctatg gaaaaaaaca taagggcttt tttgaccttg atgaaaaggc
     2341 taaggatgtg aaatcacccc ttaatccttg gggatttatc agggttaaaa atgaagcttt
     2401 aaccctaaga atttctttag aaagtatact acctgcttta caaagaggaa ttatagctta
     2461 caacgactgt gatgatggga gtgaagagct tattttagaa ttttgcaagc aatatcccaa
     2521 cttcattgct aaaaaatatc cttataaagt agatctagaa aatcctaaaa atgaagaaaa
     2581 taaactttac tcttattaca attgggcagc atcttttata cccttagatg agtggtttat
     2641 aaaaatcgat gtggatcatt actacgatgc caagaagctt tataagagtt tttataggat
     2701 tgatcaagaa aataaagcct tatgctaccc aagaattaat ttttaatctt aaatggaaat
     2761 atttatgtgc aaaatagtgg aaattatgga ttcatagggg gggggatcaa ctcttgatta
     2821 aaagaagaaa tagtagcttt atagaaagaa gggtttcaaa aaaaagccaa tggatagatc
     2881 ctaagggact tatagaagaa ctctactccg agcaacaagt cttatctcaa ggagtgaaaa
     2941 tactacaagc tcccctactt cagtggcatt ttcctgcctt aaaataccgc cgaaacgatt
     3001 accaacaata tttagatatc ttgagtttag aagaatttca ggcctttcat cgtaagagca
     3061 aagaggctaa aaaatagact ttgccatgct aaaacgccct gtaatcgagc aaatattaaa
     3121 gaaatttcaa ggagagataa aatgagctta gcaataatcc ctgctcgtgg tggctcaaag
     3181 ggtattaaaa ataaaaattt ggttttatta aacaataaac ctttaattta ctacaccatt
     3241 aaagctgcac taaatgctaa aagcattagt aaagtcgttg taagcagtga tagtgatgaa
     3301 attttaaatt atgcaaaaaa ccaaaatgtt gatattttaa aacgcccaat tagccttgcg
     3361 caagataata ctacaagcga taaagtgctt ttacatgctc taaaatttta caaagattat
     3421 gaagatgtag tttttttaca acccacttcg ccgctaagaa caaatattca tattgatgag
     3481 gcttttaatc tttataaaaa tagcaatgca aatgccctaa ttagcgtaag cgaatgtgat
     3541 aataaaattc taaaagcctt tgtttgcaat gattgtggcg atttagcagg gatttgtaat
     3601 gatgaatatc cttttatacc aaggcaaaaa ttgcctaaaa cttatatgag caatggtgca
     3661 atttatattt taaagataaa agaattttta aacaatccta gctttttaca aagcaaaact
     3721 aagcattttt taatggatga aagctcaagt ttagatattg actgtttaga ggatttaaaa
     3781 aaggctgaac agatatggaa aaaataacct taaaatgcaa taa
//
LOCUS       DBBXPZ010000116         3751 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.118, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000116 DBBXPZ010000000
VERSION     DBBXPZ010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3751
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.118"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(10..300)
                     /locus_tag="ACJFD7_001671"
     CDS             complement(10..300)
                     /locus_tag="ACJFD7_001671"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860444.1"
                     /translation="MKDLKKLGFHIICSKGNRGALANLLLFNEISSFFKIIEKYDYNF
                     KECQTVYDLLYEKRNLLNIIDTIGIELCNKICKNLKEDDENFYDPKIFKKAL"
     gene            complement(417..716)
                     /locus_tag="ACJFD7_001672"
                     /pseudo
     CDS             complement(417..716)
                     /locus_tag="ACJFD7_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788892.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
     gene            complement(789..1331)
                     /locus_tag="ACJFD7_001673"
     CDS             complement(789..1331)
                     /locus_tag="ACJFD7_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferase"
                     /protein_id="HGG0860445.1"
                     /translation="MKNVIIIGAGGFTRELYSYLKDANYEIIGYIDIQENNFFDLKYL
                     GNEDNFDKKLIQKASFALGVGQINLRKKILVKLSKKSCNFITFIHPQSFVSKEAKIGQ
                     GVIVCPFVTINANSNIGDFVLCNIYSSIAHDCKVGEGSILSPYATLNGNSSIGKNCFL
                     ATRVSLLPCVNLEDNCIVSR"
     gene            complement(1440..2594)
                     /gene="legC"
                     /locus_tag="ACJFD7_001674"
     CDS             complement(1440..2594)
                     /gene="legC"
                     /locus_tag="ACJFD7_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase LegC"
                     /protein_id="HGG0860446.1"
                     /translation="MFKKEISFIKSLFNKESIALHEPCFIGNEKKYLLECIDSGFVSS
                     VGEFVTRFEEALKEKTKTRFVIATNTGTAALHIALLANGIDENCEVITQSISFVATAN
                     AIAYTGAKPVFLDIDENTLSLSPKALEHFLENETYQKDNLSYNKTTHKAIKACIIMHT
                     FGLSAHIKALKKLCEKYHILLIEDAAEALGSTYENKALGTFGKCGILSFNGNKIITGG
                     CGGAILSDDENLAKLARHLSTTAKIPHPYEYDHDRIAYNYRLCNINAAILLAGLENLE
                     LFLENKRELAKIYKDFFKNHDKCKFIDEKSNEKSNFWLNTLLFKNENLRNIFLEECLK
                     NNIFVRPVWKSLPSLKAFQNCQSNELINTKKLEKRLINLPSSVRIANKKE"
     gene            complement(2587..3558)
                     /gene="legB"
                     /locus_tag="ACJFD7_001675"
     CDS             complement(2587..3558)
                     /gene="legB"
                     /locus_tag="ACJFD7_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,6-dehydratase LegB"
                     /protein_id="HGG0860447.1"
                     /translation="MRNILVTGADGFIGSHLCESLVKKGFKVRALSQYNSFNFWGHLE
                     KSPFLKDMEVISGDLRDSFFCEKITKNIDAIFHLGALIAIPYSYTAPQSYVDTNVNGT
                     LNMLEAAKKNEISHFIHTSTSEVYGTAFYVPIDEKHPLQPQSPYSASKIAADMMALSY
                     YNSFNLNVNIARPFNTYGPRQSARAIIPTIITQILSGAKEIKLGDLSPKRDLNFVLDT
                     CEGFISLLNLKHFGEVYNIGSGVEYSMQEVLDLIQKILDSKVKIIQDEQRLRPKNSEV
                     FRLCCDANKLKKATNWQSKISLEEGLRQSIEYFKENLENYKSELYNV"
     gene            complement(3555..>3751)
                     /locus_tag="ACJFD7_001676"
     CDS             complement(3555..>3751)
                     /locus_tag="ACJFD7_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HGG0860448.1"
                     /translation="VLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNIL
                     PLEEKLKERKLDKWMERVRR"
BASE COUNT         1172 a          607 c          523 g         1449 t
ORIGIN      
        1 aattcctttt tataaggcct ttttaaagat ttttggatcg taaaaatttt catcatcttc
       61 ttttaaattc ttacaaattt tattacaaag ttctatgcct atagtgtcga taatatttaa
      121 caaatttctt ttttcataaa gcaaatcata aactgtttga cattctttga aattataatc
      181 gtatttttct ataattttaa aaaatgatga aatttcattg aacaaaagta aatttgctaa
      241 agctcctcga ttgcctttac tgcaaatgat atgaaatcct aattttttaa gatctttcaa
      301 tggggtaaat cgttctaaat tagaaccaca aagttctatt aatttgatat aaatagtatt
      361 aaaaaatgta taaaatcgca gtttaaatca tccatactca aagaacttga attcgaaaaa
      421 actatattat tatctctaag aatttgcatg atttcttttt ttaaatttaa atcttcattt
      481 aagctttcta tagtcaagct atttttaaga tcttctatat gttggtaaat gtttattttt
      541 ccggcgttaa aattagaaaa atctattttt ctttgtagaa gttttatttg tttttcaaat
      601 tcgtatatat tgagcttgct tttattataa acacctattt catagcctaa taaataaaat
      661 aaagcactta tttgcttacc cattaaacca aagtctatga tattaatttc tttcattgtt
      721 ttttccttgt tttaattata tttttatgaa aaataagttg attggatgtg tagtttttgc
      781 taataatact acctgcttac tatgcagtta tcttctaagt ttacgcaagg caacaggcta
      841 actctagtag ctaaaaaaca attttttcct atgcttgaat ttccattaag tgtagcataa
      901 gggcttaaaa tacttccttc tcctacctta caatcatgag ctatgcttga ataaatatta
      961 caaagcacaa aatctcctat atttgaatta gcattaatgg ttacaaaagg acacactata
     1021 accccttgtc ctattttagc ttcttttgaa acaaaagatt gaggatgtat aaaagtgata
     1081 aaattacatg atttttttga aagttttaca aggatttttt ttcttaaatt gatttgtcct
     1141 acacctaaag caaaagatgc tttttgaatc aactttttat cgaaattatc ttcattgcct
     1201 agatatttta agtcaaaaaa attattttct tgtatatcaa tatagcctat aatttcgtaa
     1261 tttgcatctt ttaaataaga ataaagctct ctagtaaagc cacccgctcc tatgatgatg
     1321 acatttttca cgcacttctc ctaaaagaag aagtaaaaaa atcaaatccc ccctcccgct
     1381 attctcatat tttttcttat taaatttttt taatgctttg aattaaattt tgcaacgcat
     1441 cattcctttt tatttgctat tctaacgcta ctaggtaaat taatcaagcg tttttctaat
     1501 tttttagtgt ttataagctc attgctttga cagttttgaa aagcttttaa actcggtaag
     1561 cttttccata caggacggac gaaaatatta tttttcaagc attcttctaa aaaaatattt
     1621 cttaaatttt catttttaaa aagcaaggta ttgagccaaa aattgctttt ttcattgctt
     1681 ttttcatcga taaatttaca tttatcgtga tttttaaaaa aatccttgta aattttagca
     1741 agttctcttt tgttttctaa aaaaagttct aaattttcaa gtcctgcaag caagattgct
     1801 gcgtttatat tgcaaagacg gtaattataa gctatcctat catgatcgta ttcgtaagga
     1861 tgggggattt tagctgtggt gctaaggtgt cttgcaagtt tggctaaatt ttcatcatcg
     1921 cttaatatcg ccccaccgca tcctcctgtg atgattttgt taccattaaa acttaaaatc
     1981 ccacattttc caaaagtgcc taaggcctta ttttcataag tgcttcctaa ggcttctgcg
     2041 gcatcttcga ttaaaaggat atggtatttt tcgcaaagtt ttttaagggc ttttatatga
     2101 gcgcttaaac caaaggtgtg catgataata caagctttga tggctttgtg tgtggttttg
     2161 ttatagctaa gattatcttt ttgataagtc tcattttcta aaaaatgttc taaagcttta
     2221 gggcttaaac ttagagtatt ttcatctata tctaaaaaaa cgggttttgc acctgtataa
     2281 gcgatagcat tggccgtagc gacaaagctt atgctttgag tgatgacttc gcagttttca
     2341 tcgataccat tagctagtaa agcgatatga agggctgctg tgcctgtatt tgtagcgatg
     2401 acaaagcgtg ttttggtttt ttcttttaaa gcttcttcaa aacgcgttac aaattctccc
     2461 acgcttgaaa caaaaccgct atcaatgcac tctaaaagat attttttctc attgcctata
     2521 aaacaaggct catgtagggc gatactttct ttgttaaaaa gactttttat aaaagaaatt
     2581 tcttttttaa acattataaa gctcactttt ataattttct aaattttctt taaaatactc
     2641 tatgctttgt ctcaagcctt cttctagact tattttgctt tgccaatttg tagctttttt
     2701 aagcttgttt gcatcgcaac aaagtctaaa aacttcgcta tttttaggac gcaatctttg
     2761 ttcatcttgg atgattttta ctttagaatc taaaattttt tgtatgagat caagtacttc
     2821 ttgcatggag tattccactc ctgagcctat attataaact tctccaaaat gttttaaatt
     2881 taaaagagag ataaaaccct cgcaagtatc tagcacaaaa tttaaatccc ttttagggct
     2941 taaatctcct agtttgattt cctttgctcc acttaaaatt tgtgtgatga tggtaggtat
     3001 gatagccctt gcgctttgtc ttggtccata ggtgttaaaa gggcgtgcaa tattgacatt
     3061 taaattaaaa gaattataat aactcagcgc catcatatct gcagcgattt tgcttgcaga
     3121 ataagggctt tgaggttgta aagggtgttt ttcatcgata ggtacataaa aggctgtgcc
     3181 ataaacttcg cttgttgagg tgtggataaa atgtgaaatc tcgttttttt tagctgcttc
     3241 gagcatattt aaagtgccat tgacattggt atccacatag ctttgtgggg ctgtgtagga
     3301 gtaggggata gcgattaaag cgccaagatg aaagatcgca tctatatttt tggtgatttt
     3361 ttcgcaaaaa aaactgtctc ttaaatctcc acttataact tccatgtctt ttaaaaaagg
     3421 acttttttct aaatgtcccc aaaaattaaa agaattatac tgacttaaag ctctgacttt
     3481 aaaacctttt ttgaccaaac tttcacaaag atgagaacct ataaaaccat cagcacctgt
     3541 aactaaaata tttctcacct tctcaccctt tccatccatt tatctaattt tctttcttta
     3601 agtttttctt ctaaaggaag tatattttta atcaaagcat tttcttgtgc tttaatatgt
     3661 ccataaacta attccataaa ttctaaatgt tcttttatcc aaagaatact tttattaaaa
     3721 gcatcttctt tggttttagg atttaaaaca t
//
LOCUS       DBBXPZ010000117         3580 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.119, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000117 DBBXPZ010000000
VERSION     DBBXPZ010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3580)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3580)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3580
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.119"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            174..1445
                     /locus_tag="ACJFD7_001677"
     CDS             174..1445
                     /locus_tag="ACJFD7_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase"
                     /protein_id="HGG0860449.1"
                     /translation="MNFNKETLALHGAYNFDTQRSISVPIYQNTAYNFENLDQAAARF
                     NLQELGNIYSRLSNPTSDVLGQRLANVEGGAFGIPVASGMAACFYALINLASSGDNVA
                     YSNKIYGGTQTLISHTLKNFGIEAREFDIDDLDSLEKVIDQNTKAIFFESLSNPQIAI
                     ADIEKISQIAKKHKIVSICDNTVATPFLLQPFKHGVDVIVHSLSKYVSGQGSALGGAL
                     IERKDLNDLLKNNDRYKAFNTPDPSYHGLNLNTLDLPIFSIRVIITWLRDLGASLAPQ
                     NAWLLLQGLETLAVRIEKHSQNAEKVANFLNSHPDIKGVNYPTLASNAYHNLFKKYFD
                     KNFASGLLSFEAKDYEHARRICDKTQLFLLAANLGDSKSLIIHPASTTHSQLSEEELQ
                     KAGITKATIRLSIGLENSDDLIADLKQAIES"
     gene            1529..2410
                     /gene="metA"
                     /locus_tag="ACJFD7_001678"
     CDS             1529..2410
                     /gene="metA"
                     /locus_tag="ACJFD7_001678"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008899 - homoserine O-succinyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0019281 - L-methionine biosynthetic process
                     from homoserine via O-succinyl-L-homoserine and
                     cystathionine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HGG0860450.1"
                     /translation="MPLIIPENIPAYELLKEHAFIMGLRRAKHQDIRPQEILIVNLMP
                     KKIETENQILSLLANSPLQVNITLLATTSYVGKNTPFTHLEKFYKGLEEVKKHKFDGA
                     IVTGAPVEQMDFEKVAYWEELLEIFDFLKQNVTSSMYICWGAMAALKYFYGVDKISLD
                     KKIFGVYKHDKVSPDLLLTNLDEKVLMPHSRHSSMDEEQILALQKQGKLKILLRNKKI
                     GSALLRDEKNIFILGHLEYFKETLHQEYVRDNFIQKAKNYYDKKGNIKYNWRSNANTI
                     FANWLNYDVYQSTPFVL"
     gene            complement(2415..3014)
                     /locus_tag="ACJFD7_001679"
     CDS             complement(2415..3014)
                     /locus_tag="ACJFD7_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HGG0860451.1"
                     /translation="MRKSIAIIGGSIAGLSAALFFASAKNEELDFDITVFDEGKADLK
                     AAAIYNVPFFPKGAKADEIYTHIKAQIASMLEVKYIDSKVVSISGEKGDFTVNDEQGL
                     GIKADYIIVATGANKSDIKELEDFVIPHELIPKPNKFCFKHHGRQIIKEGIYAAGLAS
                     GVTTMVACAMGSANEAACAILSDIKGAVSVYHDTPTTRV"
     gene            3174..3557
                     /gene="queF"
                     /locus_tag="ACJFD7_001680"
     CDS             3174..3557
                     /gene="queF"
                     /locus_tag="ACJFD7_001680"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0033739 - preQ1 synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046857 - oxidoreductase activity, acting
                     on other nitrogenous compounds as donors, with NAD or NADP
                     as acceptor [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preQ(1) synthase"
                     /protein_id="HGG0860452.1"
                     /translation="MRYGEKEIKEFDVENMEIWPNDAKNDYIIKITLPEFMCCCPRSG
                     YPDFATIYLEYMPDKFVVELKAIKLYINTFMYRNVSHEASINEIYNTLKDKLKPKWIK
                     VVGDFNPRGNVHTVIECRSDMVVPK"
BASE COUNT         1213 a          541 c          615 g         1211 t
ORIGIN      
        1 aaatgtctta tattagtttt aacttaatgc tttcttcttt ctgtatgcgt gcttggcacg
       61 cttaatctac tcgtatatac tcatattcta taaatttaca ttttcaaata gcctagttta
      121 aagccgataa aaagcttttt aacatttttt cattgataca ataaggataa aaaatgaatt
      181 tcaataaaga aactttagca ttacacggag cttataattt tgatactcaa agaagtatta
      241 gtgtgcctat atatcaaaac actgcgtata attttgaaaa tttggatcaa gctgcagcaa
      301 ggtttaatct tcaagaactt ggcaatattt actcaagact tagcaatcct acaagcgatg
      361 ttttaggaca aagacttgct aatgtcgaag gaggggcttt tggaattcct gttgctagcg
      421 gtatggcagc ttgtttttat gctcttatca atttagcaag ttcgggagat aatgtcgcgt
      481 attcgaacaa aatttatggt gggactcaaa ctttaatttc tcacacactt aaaaattttg
      541 gcatagaagc tagggaattt gatatcgatg atttagatag cttggaaaaa gttatagatc
      601 aaaacacaaa agcgattttt ttcgaaagtc tttcaaatcc tcaaattgcc atagctgata
      661 tagaaaaaat aagccaaata gcaaaaaaac ataaaatcgt tagcatttgt gataataccg
      721 ttgctactcc tttcttactc caacctttta aacatggcgt ggatgtaatc gtgcatagtt
      781 taagtaaata tgtaagcggt caaggcagtg ctttgggtgg agcacttata gaaagaaaag
      841 atttaaacga cttgcttaaa aataacgata gatataaagc ttttaacact cctgatccaa
      901 gttatcatgg actgaattta aatacacttg atttgccgat ttttagtatt agagtcatca
      961 tcacttggct tagagatcta ggagctagct tagcacctca aaatgcttgg ttacttttac
     1021 aaggacttga aaccttggca gtgcgtatag aaaaacacag tcaaaatgct gaaaaagttg
     1081 cgaatttttt aaattctcat cctgatatca agggcgtaaa ttatcctact ttagcaagta
     1141 atgcttatca taatttattt aaaaaatatt ttgataaaaa ttttgctagt gggcttttaa
     1201 gctttgaagc taaagattat gagcatgcta gaagaatttg tgataaaact caacttttct
     1261 tacttgctgc aaatttgggt gatagcaagt ctttgatcat ccatcctgct tctactactc
     1321 attcgcaact aagcgaagaa gaactccaaa aagcaggcat tacgaaagct actatacgct
     1381 taagcatagg acttgaaaat agcgatgatt tgatagcgga tttaaaacaa gctatagaaa
     1441 gttaaaagtg tgtttgcatt gagtggaatg agataaaaat tccaccatgc tttatcataa
     1501 ataaggttta ttaaataaag gagaaaaaat gccactgatt attccagaaa atatacccgc
     1561 ttatgagctt ttaaaagagc atgcttttat catgggatta aggagagcaa agcatcaaga
     1621 tatcaggccg caagaaattt tgattgtcaa tcttatgcca aaaaaaattg aaacagaaaa
     1681 tcaaattcta agcttacttg caaattctcc tttacaagta aatatcacac ttttagccac
     1741 gactagctat gtgggtaaaa atactccttt tactcatttg gaaaaatttt acaagggtct
     1801 tgaagaggtt aaaaaacata aatttgatgg tgctatcgtt acgggagctc ctgtggaaca
     1861 aatggatttt gaaaaggttg cttactggga agaattgcta gaaatttttg attttttaaa
     1921 gcaaaatgta acaagttcta tgtatatttg ttggggtgcc atggctgctt taaaatactt
     1981 ttatggtgtg gataaaatct ctttagataa gaaaattttt ggagtctata agcatgataa
     2041 agtttcgcct gatctgcttt taacaaattt agatgaaaag gttttaatgc ctcattcaag
     2101 acattctagc atggatgaag agcaaatttt agcactacaa aaacaaggga aattaaaaat
     2161 tttgcttaga aataaaaaaa tcggttcggc tttattaaga gatgaaaaga atatttttat
     2221 tttagggcat ttggaatatt ttaaagagac tttacatcaa gaatatgtaa gagataattt
     2281 catacaaaaa gctaaaaatt attatgataa aaagggcaat ataaaataca attggcgttc
     2341 aaatgcaaat accatttttg caaattggct caattatgat gtgtatcaaa gcacaccttt
     2401 tgtgctttga tgatttaaac tcttgtagta ggtgtatcgt gatatacgct tactgcacct
     2461 ttgatatcgc ttaaaatcgc gcaagctgct tcattggcac ttcccatcgc gcaagctacc
     2521 atagtcgtaa cacctgaagc aagtcctgct gcgtaaattc cttctttgat aatctgtctc
     2581 ccgtgatgtt tgaagcaaaa tttgtttggt tttggtataa gctcatgcgg tattacaaaa
     2641 tcttcaagtt ctttgatatc gcttttgttt gcccctgttg ctacgatgat ataatctgct
     2701 tttataccca agccttgctc atcattaaca gtaaaatctc ctttttctcc gcttatgctt
     2761 actacttttg aatcgatgta ttttacttcg agcatagaag caatttgtgc ttttatgtga
     2821 gtgtaaattt catctgcttt tgcacctttt gggaaaaaag gaacattgta aattgctgct
     2881 gcttttaaat ctgctttacc ctcatcaaaa acagtgatat caaagtcaag ttcttcattt
     2941 ttagctgaag cgaaaaataa agccgcgcta agtcctgcga tgctaccgcc tataattgca
     3001 attgattttc tcattttttt ccttttgaaa gatttgcctt attctagtat aaaaagcttt
     3061 atttaatata atatttgtct tttttatgca atttgctaaa aatgtttatt tttcaattgc
     3121 tctaaaagta attttttata taattttcta aaaattttca ataaggaaag ctcatgcgtt
     3181 atggtgaaaa agaaattaaa gaatttgatg tagaaaatat ggaaatttgg ccaaatgatg
     3241 ctaaaaatga ctatatcatt aaaatcacct tgcctgaatt tatgtgttgt tgtccgcgtt
     3301 caggttatcc tgattttgca acgatttatc ttgagtatat gcctgataaa tttgtggttg
     3361 agcttaaagc gataaaactt tatatcaata cttttatgta tagaaatgtt tcacatgaag
     3421 caagtatcaa tgaaatttat aatactttaa aagataaatt aaaaccaaaa tggattaaag
     3481 ttgttgggga ttttaacccg cgtggaaatg tacatacggt gatagaatgt cgtagcgata
     3541 tggtagtgcc aaagtaatat ttaagtaaaa tattaacata
//
LOCUS       DBBXPZ010000118         3546 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.120, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000118 DBBXPZ010000000
VERSION     DBBXPZ010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3546)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3546)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3546
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.120"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            129..1193
                     /locus_tag="ACJFD7_001681"
     CDS             129..1193
                     /locus_tag="ACJFD7_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HGG0860453.1"
                     /translation="MKYPLDCEENFEKSFLFWLAKYVKFKLNSLSNKELKNPQALAEV
                     NFALTKGVKNIDELDALAKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEEL
                     IVEVLASITGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSK
                     GVKLPEFMSEEELKKFLDAIENADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDIS
                     EENDLYIIRIRAKGNKYRVVMIKKELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSY
                     VSRIVEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYT
                     HFDNDKLKLAAQVAKELSDS"
     gene            1183..2967
                     /locus_tag="ACJFD7_001682"
     CDS             1183..2967
                     /locus_tag="ACJFD7_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate-binding protein/class IV
                     aminotransferase"
                     /protein_id="HGG0860454.1"
                     /translation="MTLENYAVFGKYFYHDLKHTLKAFNHKESKKCFKFIEKYKNDFY
                     ILMLADYELYRYFQDKNFTSKKAYLSVFAFKKRKKFQKEDIDEEKFIPEFINFLDQDN
                     YKENFIKVKEAISKGRVYQINLTQNFKFHSKMDSFELFKLLLSRQDTEFKAFIKDEAR
                     EILSFSPELFFKTKKRKIFTKPMKGTIKRDKDPIKDEENKIFLQNDTKNLSENVMICD
                     LLRNDLSKIITKKSLKTKLFEIQSHPTLHQMTSRAQGKLKKNISLYQIFKALFPCGSI
                     TGAPKLESIKFIEELEQRDRGIYCGTIGLIHKNKNKFSVAIRTLEKQDEIYTYSTGSG
                     LVWDSKFKDEFEELKLKSAILNPCDFHLFETMYFKNSQILFLKEHLLRLINSALKFNF
                     NTHKLFKDFYNILNQKSSYKKYQNFTLFKLDEKIFHKKHSLFYNFPLPFKNPHKEGIL
                     KLILYKDGRYEFQQSALKQNSNDILLLSDDKINSKSDNLYHKSSLRTFYNQHSYKWQQ
                     NLCYDIAFFNEKDELCEGSRTNLILEKNAQFYTPQIQSGMLNGVYRNFLINLGLIKEK
                     ALFKQDLFEAENIYCINSVRGLKKVKLQ"
     gene            2964..3530
                     /locus_tag="ACJFD7_001683"
     CDS             2964..3530
                     /locus_tag="ACJFD7_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HGG0860455.1"
                     /translation="MKKILFIDNYDSFSYTIIYYLKELGFECKVIKNDAFKKAKELEK
                     FDFTHLIISPGPHSPKESKLSLKAIKYFKKNKKILGICLGHQCIAEIFGGKVSKMQNP
                     MHGKISKLYFKKDPIFKGIKQEIEICLYHSLHISSMPKKCKILAHNSENIIMAIKHKK
                     YPIYGLQFHPEAVLTQKGKKLLKNFMKL"
BASE COUNT         1420 a          484 c          463 g         1179 t
ORIGIN      
        1 atatttcaat ctttttgcct tgcatataaa aacaaacttt ttcctaaaaa agcttttttt
       61 tactaagtta atactaaaat accttttcta gttaaaaagc taaaatttta gatttaggaa
      121 aagtttttat gaaataccct ttagattgtg aagaaaattt tgaaaaatca ttcttatttt
      181 ggttagcaaa atatgtaaaa tttaaactca actcactatc taacaaagag ttaaaaaatc
      241 cacaagcttt agcagaagtt aattttgctc ttacaaaagg tgtaaaaaat attgatgaac
      301 ttgacgctct agcaaaaaaa gcaagaaatg ctggtttaag tggagttaat acttatttta
      361 atcctttaaa aaaagtattt gaatatttaa atttttataa gctttactct ttaaaacaga
      421 ttgatgaaga actcattgta gaagttttag caagtataac aggtgcttta tcagatgcaa
      481 gcaaaaaaaa ttaccgtatt gctgtgatta atttttttga ttttttagac aagcaaaatg
      541 aagaagatga aaaagcacat attttcgata tcaatcttaa aaactgggca ggtatagcag
      601 gttctaaagg ggtaaaatta cctgaattta tgagtgaaga agagcttaaa aaatttcttg
      661 atgctattga aaatgcagat tttaaaaaca ataccatacg caataaactt attattaaaa
      721 tcatcatttt tacaggcata cgggtaagtg aagctatcaa tatcaaaatg ggtgatatta
      781 gcgaagaaaa cgatctttat atcataagaa taagagctaa aggcaataaa tatcgtgttg
      841 taatgataaa aaaagaactt atttacgatt tgcttaaaaa tgtaagtatt aattatatga
      901 gtaaagacgc cctacttttt gtcaataaaa aaggcactcc actgactcaa tcttatgtca
      961 gtcgcatagt agaacagctt ttatttcgtg caggaattcg caaacaaaaa aatggtgctc
     1021 atatgttgcg tcatactttt gccaccctgc tttataaaaa gcaaaaagat ttagttttag
     1081 ttcaagaagc tttagggcat gcaagtttaa atacctcaag aatttacact cattttgata
     1141 atgataaatt aaaacttgcc gcacaggttg caaaggaatt aagtgactct tgaaaactat
     1201 gctgtttttg gtaaatattt ttaccatgat ttaaaacaca ctttaaaagc ctttaaccac
     1261 aaagaaagta aaaaatgctt taaatttata gaaaaatata aaaatgattt ttatatttta
     1321 atgcttgctg attatgagct atatagatat tttcaagata aaaatttcac aagcaaaaag
     1381 gcttatttgt ctgtatttgc ttttaaaaaa agaaaaaaat ttcaaaaaga agatatcgat
     1441 gaagaaaaat ttattcctga atttataaat tttttagatc aagataatta caaggaaaat
     1501 ttcatcaagg ttaaagaggc aatctccaaa ggaagagttt atcaaatcaa cctcactcaa
     1561 aattttaaat ttcatagcaa aatggattct tttgaacttt ttaaactttt gctttctaga
     1621 caagatactg aatttaaagc ttttataaaa gatgaagcaa gagaaatttt gtccttctct
     1681 cctgaacttt tcttcaagac caaaaaaaga aaaatattta caaaacctat gaaaggcaca
     1741 attaagcgtg ataaagatcc tataaaagat gaagaaaata aaattttctt gcaaaatgat
     1801 acaaaaaatc taagtgaaaa tgttatgatt tgtgatcttt tacgcaacga tctttcaaaa
     1861 atcatcacaa aaaaaagttt aaaaaccaaa ctttttgaaa ttcaaagtca ccctacttta
     1921 catcaaatga cttcaagagc acaaggaaaa cttaaaaaaa atatttcttt atatcaaatt
     1981 tttaaagctc tctttccttg tggttctatt acaggtgctc caaagcttga aagcattaaa
     2041 tttattgaag aattagaaca aagagatcgt ggtatttact gcggaactat aggtttaata
     2101 cacaaaaata aaaataaatt tagcgtagcc atacgcacct tagaaaaaca agatgaaatt
     2161 tatacttata gcaccggtag cggcttggtt tgggactcaa aatttaaaga tgaatttgaa
     2221 gaattaaaac ttaaaagcgc gatcttaaat ccttgtgatt ttcatctttt tgaaaccatg
     2281 tattttaaaa attctcaaat tttattttta aaagaacatt tattaaggct tataaattca
     2341 gctcttaaat ttaattttaa tactcacaag ctctttaaag atttttataa tattttaaat
     2401 caaaaaagtt cttataaaaa atatcaaaat tttacacttt ttaaactcga tgaaaaaatt
     2461 ttccacaaaa aacactcttt attttataat tttcccctac cctttaaaaa tccacataaa
     2521 gaaggaattt taaagcttat tttatacaaa gacggaagat acgaatttca acaaagtgcc
     2581 ttaaagcaaa attcaaacga tattttgctt ttaagtgatg ataaaattaa ctcaaaaagt
     2641 gacaatctct atcacaaaag ctctttacgt actttttata atcaacactc atacaaatgg
     2701 cagcaaaact tgtgttatga catagctttt tttaacgaaa aagatgaact ttgcgaaggc
     2761 tcaagaacca atctcatctt agaaaaaaac gctcaatttt atactccaca aattcaaagc
     2821 ggtatgttaa atggcgtata tagaaatttc ttaatcaatc ttggcttgat aaaagaaaaa
     2881 gcattattta aacaagattt atttgaagca gaaaatattt attgcattaa ttccgtgcgt
     2941 ggtttaaaaa aggtaaaatt acaatgaaga aaattttatt tatagataat tatgattctt
     3001 ttagttacac catcatctat tatcttaaag aacttggttt tgaatgtaaa gtgataaaaa
     3061 acgatgcctt taaaaaagcc aaagaattag aaaaatttga ttttactcat cttatcattt
     3121 ctcctggtcc tcattctccc aaagaatcta aattaagctt aaaagcaatc aaatatttta
     3181 aaaaaaataa aaaaatttta ggcatatgtt taggacatca gtgtatagct gaaatttttg
     3241 gcggtaaggt ttctaaaatg caaaatccca tgcatggtaa aatttctaaa ctttatttta
     3301 aaaaagatcc tatttttaag ggtattaaac aagaaattga aatttgctta tatcattctt
     3361 tacacatcag ttctatgcct aaaaaatgca aaattttagc tcataattca gaaaatatta
     3421 ttatggcaat taaacataaa aaatatccta tttatggatt gcaatttcac cccgaagcgg
     3481 ttttaactca aaaaggcaaa aaattactta aaaactttat gaaactttag tcttttttgc
     3541 atttaa
//
LOCUS       DBBXPZ010000119         3515 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.121, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000119 DBBXPZ010000000
VERSION     DBBXPZ010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3515
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.121"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            31..1050
                     /gene="hddA"
                     /locus_tag="ACJFD7_001684"
     CDS             31..1050
                     /gene="hddA"
                     /locus_tag="ACJFD7_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-D-manno-heptose 7-phosphate kinase"
                     /protein_id="HGG0860456.1"
                     /translation="MKTIRTQTPLRLGLAGGGTDINLYCDKYTGYVLNATISLYIHCT
                     LIEREDGKIIFDSPDTNSYCEYESKERLENDGKLDIFKSIYNRIVKDFTKKPLSFSLH
                     TYSDVPSGSGLGGSSTLVVGVIKAFAEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQD
                     QYAATFGGFNFMEFYDNKRVIVNPLRIKNWIASELEARTVLYFTNITREAKDIEEHKK
                     GKLGDEKSLEAMHAIKQDAIKMKEALFKADFDTLAKILGKSWQSKKIISEIVSNDELE
                     RIYKLAIDNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKALSKEQGYVQDFSFAKEGV
                     KSWRI"
     gene            1038..1643
                     /gene="gmhA2"
                     /locus_tag="ACJFD7_001685"
     CDS             1038..1643
                     /gene="gmhA2"
                     /locus_tag="ACJFD7_001685"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HGG0860457.1"
                     /translation="MENLNSYIKEHFTDSILVKEQILKDENLITLIKNASLEVIKAYK
                     NGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALTTDTSILTAIGNDYGYEN
                     LFARQVQAQGVKGDVFIGISTSGNSKNILKALELCKQKEIISIGLSGASGGAMNELCD
                     YCIKVPSTCTPRIQEAHILIGHIICAIIEEELFGKGFSCKQ"
     gene            1631..2299
                     /locus_tag="ACJFD7_001686"
     CDS             1631..2299
                     /locus_tag="ACJFD7_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002917961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HGG0860458.1"
                     /translation="MQAIILCGGLGTRLKSVIKNIPKPMAPINDKPFLEFIFEYLKKQ
                     GIKEVILAVSYKYEVIKEYFKDEFLGIKIKYSIEKEPLGTGGAIKETLKFIKNEAYVL
                     NGDTFFDIDLSKLKLNGSKICLALKQMNDFDRYGTVNVDGLGLVISFEEKVFKKQGLI
                     NGGIYLLDKDIFKDFALREKFSFEEFLQENYKKLKAKAHIFDDYFIDIGVPEDYRFFY
                     NSQI"
     gene            complement(2307..>3515)
                     /locus_tag="ACJFD7_001687"
     CDS             complement(2307..>3515)
                     /locus_tag="ACJFD7_001687"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HGG0860459.1"
                     /translation="RKIMHCPLCQSENNQKELFKTVNAFTSSGKLNKNPTQIKTTITT
                     NDGGGGYCKGNNAITFTQCQDCGYIYNSTFDLNKISKEYQSEGYFSRKIVSKAMSNNI
                     KTIKDKCLKYINKNSTCLEVAPGSGDMVNALIRNVKFMYTVDPSLVSLEMENINNLKH
                     IHGFFNFNILKDRLEHKIDFIIFRHLLEHINTPLDFLKDVVKLLENNGIIYIEVPNIE
                     EFIEYRRFYEIFNDHCGYYQKNVLINTLQSLGCEFIDEIFLYREQHIGLFFRKNTNIC
                     DINKLNFKLFDKNIYTLFQENIRKLNNLLHDYKNIAIYGSGAHGNTIITFIDNPEKIK
                     KCFDLDVRKQGMYLQNSSIIIQEPNIENFKDLEAIIIAAPLYEKEIIRSLREKGYKED
                     IITTEKELKK"
BASE COUNT         1237 a          436 c          599 g         1243 t
ORIGIN      
        1 ataaattata gcaaaataag tagtaattca atgaaaacta tacgcacgca aactcctctt
       61 cgccttggtt tagcaggtgg ggggactgat ataaatttat attgtgataa atacacaggt
      121 tatgttttaa atgcgactat atctttatat atacattgta ctttgatcga aagagaagat
      181 ggaaaaatca tttttgattc tcctgataca aattcttact gtgagtatga aagtaaagag
      241 cgtttagaaa atgatggaaa actagatatt ttcaaaagta tttataatcg tattgtaaaa
      301 gattttacaa aaaaaccttt aagtttttct ttgcatacat actcagatgt accaagtggt
      361 agtggtttgg gcggaagctc aaccttagtt gtaggggtta taaaagcctt tgcagaatgg
      421 cttaatctac ctttgggaga atatgaaatc gctaagcttg cttatgagat agaaagagaa
      481 gatttaggca tagtaggcgg agcacaagat caatacgccg caacttttgg tggctttaat
      541 tttatggaat tttatgataa taaaagagtc attgttaatc ctttgcgtat taaaaactgg
      601 atagctagtg agcttgaagc tagaactgtg ctttatttta caaatattac aagagaagca
      661 aaagatatag aagagcataa aaaaggaaag cttggagatg aaaaatccct cgaagctatg
      721 cacgctataa aacaagatgc tataaagatg aaagaagctt tatttaaggc ggattttgat
      781 actttggcga aaattttagg caagtcttgg cagtcaaaaa aaatcatttc agaaatcgtt
      841 agcaatgatg aacttgaaag aatttataaa ctagctatag ataatggagc ttatagcggc
      901 aaaactagcg gagcaggagc tggtggattt atgtttttct ttgtagatcc tacaaaaaaa
      961 tacaacttaa tcaaagcttt aagcaaagag caaggttatg tgcaagattt ttcatttgca
     1021 aaagaggggg ttaaatcatg gagaatttaa attcctatat aaaagaacat tttacagatt
     1081 ctattttagt aaaagagcaa attttaaaag atgagaattt aataactctt attaagaatg
     1141 cttcattaga agtcataaaa gcttataaaa atggtaacaa aactttactt gcaggaaatg
     1201 gtggtagcgc agcagatgca cagcatattg caggggaatt tgtaagtagg ttttattttg
     1261 atagacccgg tatcgcaagt attgcactta ctacagatac aagtatttta acagctattg
     1321 gcaacgatta tggttatgaa aatttatttg ctagacaagt gcaagctcaa ggagttaagg
     1381 gagatgtttt tataggaatt tctacaagcg gaaatagtaa aaatatctta aaagctttag
     1441 agctttgcaa acaaaaagaa atcataagca taggcttaag tggagctagt ggcggagcga
     1501 tgaatgagct ttgtgattat tgtataaaag taccttcaac ttgcacgcca agaattcaag
     1561 aagcacatat tttaataggg catattattt gtgctatcat cgaagaagag cttttcggta
     1621 aaggtttttc ttgcaagcaa taatactttg cggtggtttg ggaacaagac ttaaaagcgt
     1681 tataaagaac attccaaagc ctatggcacc gataaatgat aagccttttt tagaatttat
     1741 ttttgaatat cttaaaaagc aaggcataaa agaagttatc ttagcagtat catacaaata
     1801 tgaagtgata aaagagtatt ttaaagatga gtttttaggt ataaaaataa aatacagcat
     1861 cgaaaaagag cctctaggaa caggcggagc tataaaagag actttgaaat ttataaaaaa
     1921 tgaagcttat gttttaaacg gcgatacttt ttttgatata gatttaagta aattaaagct
     1981 aaatgggagt aaaatttgtc ttgctctaaa acaaatgaat gattttgata gatatggcac
     2041 ggtaaatgtt gatgggctag gtcttgtaat ttcttttgag gaaaaggtat tcaaaaagca
     2101 aggtttaatc aatggtggaa tttatctttt agataaagat atttttaaag attttgcttt
     2161 gcgggaaaaa ttctcttttg aagaattttt gcaagaaaat tataaaaaac taaaagctaa
     2221 agctcatatt tttgatgatt attttataga tattggcgtg cctgaggatt ataggttttt
     2281 ttataattct cagatatgat tctatattat ttttttaact ctttttctgt agtgataata
     2341 tcctctttat atcctttttc tcttaaagat cttataattt ctttttcata taaaggcgct
     2401 gctatgataa tagcttcaag gtctttaaaa ttttctatat ttggttcttg aatgataatt
     2461 gaagaatttt gtaaatacat tccttgtttt cttacgtcaa gatcgaagca ttttttgatt
     2521 ttttctgggt tatcaataaa agttataata gtatttccat gggctccaga tccataaatt
     2581 gcgatatttt tataatcatg caaaagatta tttaattttc ttatattttc ttgaaataag
     2641 gtataaatgt ttttatcaaa aagtttaaaa ttcaacttat ttatgtcgca tatatttgta
     2701 ttttttctaa aaaataatcc tatatgttgt tctctataaa gaaaaatttc atctataaat
     2761 tcacaaccta aagattgcaa agtgttaatt aaaacatttt tttgataata tccacagtga
     2821 tcattaaaaa tttcataaaa tcttctatat tcaataaatt cttcaatatt tggaacttct
     2881 atatatataa taccattgtt ttcaagtagt ttgactacat cttttaaaaa gtctaaaggt
     2941 gtattaatat gttctagtag atgtctaaat ataatgaaat caattttatg ttctagccta
     3001 tcttttaaaa tattaaaatt aaaaaatccg tgtatatgtt taagattatt tatattttcc
     3061 atttctaaag aaactaaaga tggatcaacg gtatacataa attttacatt acgtataaga
     3121 gcatttacca tatctccact tcctggagca acttctaagc aagtactatt tttgttgata
     3181 tattttagac atttatcttt aattgttttt atattattgc tcatggcttt tgagactatt
     3241 ttgcgggaaa aatagccttc actttggtat tctttagaga ttttatttaa atcaaatgtc
     3301 gagttataga tatatccaca atcttggcac tgtgtaaaag ttatagcatt gtttccttta
     3361 caataccccc ccccgccatc attagttgtt atagttgttt ttatttgagt tgggttttta
     3421 ttaagttttc ctgaagaagt aaaagcattt acggttttaa aaagctcttt ttggttattt
     3481 tcactttgac ataatggaca atgcataatt ttcct
//
LOCUS       DBBXPZ010000120         3499 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.122, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000120 DBBXPZ010000000
VERSION     DBBXPZ010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3499)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3499)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3499
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.122"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            428..993
                     /locus_tag="ACJFD7_001688"
                     /pseudo
     CDS             428..993
                     /locus_tag="ACJFD7_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851848.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FIST N-terminal domain-containing protein"
     gene            969..1505
                     /locus_tag="ACJFD7_001689"
     CDS             969..1505
                     /locus_tag="ACJFD7_001689"
                     /inference="COORDINATES: protein motif:HMM:NF021926.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FIST C-terminal domain-containing protein"
                     /protein_id="HGG0860460.1"
                     /translation="MQEYTFALKIGEDYLISPMKINPNKTLFSYCDIESAQELSLLKK
                     TNFIEAIKKDYEKFSLNKPKPLGVIFNDCILRRLHNKEHLNQIHFNNFPIVGFSSFGE
                     IYGAGIAKSLVAIFFYEVENFNDFKPRYLKTFIQKYSDFKYYYLNIKGQKLEMTNEIN
                     KIILNQLKCYEDVLAKLN"
     gene            complement(1564..1917)
                     /gene="rplT"
                     /locus_tag="ACJFD7_001690"
     CDS             complement(1564..1917)
                     /gene="rplT"
                     /locus_tag="ACJFD7_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HGG0860461.1"
                     /translation="MARVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSLV
                     YAYRDRRRKKRDFRRLWIVRINAACRLNDLSYSRFINGLKKAGVELDRKILADLAMND
                     AAAFAKIAEAAKKAL"
     gene            complement(2011..2202)
                     /gene="rpmI"
                     /locus_tag="ACJFD7_001691"
     CDS             complement(2011..2202)
                     /gene="rpmI"
                     /locus_tag="ACJFD7_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HGG0860462.1"
                     /translation="MPKMKSVKSAVKRFKVGKNKIKRGSAFRSHILTKKPAKRMRDLR
                     TAKYVHSTNVKAVEKMLGI"
     gene            2361..>3499
                     /locus_tag="ACJFD7_001692"
     CDS             2361..>3499
                     /locus_tag="ACJFD7_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860463.1"
                     /translation="MTINSANPYQNLTLSNPLQNSSALNLIKDSKALDQKGNENSLEQ
                     LSYIFNNITYASEFGFRINEEGFFDKDLNKIANIPESYDINIKSVRSIAKELAKQDEN
                     LNYNKIDLPYLLNSYHSSLKSINSEFLQDDNAYLSRDLISKLSSGFSTDNGEFLGQIS
                     RIYNNQEEIDLALSNITNLNTLMLDNKITNFHFDKAIENTSSNEILKPYLTKNAEVSK
                     SGLLMNFIYHDIKTQNEKEFNFFMKPATLELSSHQNLQKILKGETDIEDYIKKENEKK
                     MSFDLYLYVNGVDKKTSTQDKLSVFFQQYINYQKDMDLREFANSSSIFQIYIDQNRND
                     FDALKKQYQNQSQDTQRLEEANQLRSSSIENFLDRRQKQANINKI"
BASE COUNT         1370 a          491 c          446 g         1192 t
ORIGIN      
        1 aatttactta ttgcattttt tataacttaa ggtataataa aaattacaaa taaatgccga
       61 atttatggtg tcttgattta gttaactagt aattaaaaaa tagttttaat ggagttaaat
      121 tgatgttttt ttaattttaa aaataaaagc tcaacaaaaa aagaagaagt aaaaaagttt
      181 tagaagctct atatcttcaa taaaatgaac ttgaagaaaa attaaaaaaa ataaacatca
      241 agccaaaatt aattataggc tttgtgtcaa tcaacttaat ctagcgatca taggaaataa
      301 gattcaaaat tctataaatg agcaatgtga tatcatctta agcagtgcta ctgatttatt
      361 atgcaacctt gattctaact caaacattga aaacagtcct tataaacaaa atatccaagg
      421 aataagcttg atacttttta gtgaagatat gatagaaaat ctttgcacaa ataaaatcaa
      481 gctttttagt gatataaaag attatacaga aagaaaaaaa ctgatagaaa aagaagtttt
      541 atttataaat ataccttttg aagcacactg cataaatact ttgcattatt taatttatga
      601 tggtttaagt caaagcgaaa gttctctttt agaacttttg tacaaacaca acccctatcc
      661 ttgtgcttta gtagggggtg ggtctagcgg aaacatggac tttagcggag catttatatt
      721 ttataacgga gaaatattaa aaatcaagct ttaagcatac atgttcaatt taaacctaaa
      781 taccgtttta atttaatgaa gtctcaaaat ttcaatcctc aaagcaacat tacttttacc
      841 atacttgatg taagcttata tgataaaacc gtacgcgaat ttattaataa aaaacctttc
      901 aatccatcaa cgcggttgaa gttttatgta attattttaa ctgcactttt gaagaactta
      961 aaaataaaat gcaagaatat acttttgctt taaaaattgg agaagactat cttatttccc
     1021 ctatgaaaat caacccaaat aaaacattat ttagttattg tgatatagaa agcgctcagg
     1081 aattaagctt gcttaaaaaa acaaatttta ttgaagctat aaaaaaagat tatgaaaaat
     1141 tttctcttaa taaaccaaaa ccactaggag taatttttaa cgattgtatc ttaagaagac
     1201 ttcacaacaa agaacattta aatcaaatcc attttaataa ttttcccata gttggttttt
     1261 ctagttttgg agaaatttat ggagcgggaa ttgcaaaaag tttagtggca atattttttt
     1321 atgaagttga aaattttaat gatttcaaac ctagatattt aaaaactttc atacaaaaat
     1381 acagtgattt taaatactat tatcttaata taaaaggtca aaaactagaa atgacaaatg
     1441 agattaataa aataatctta aatcaactca aatgttatga agatgttcta gctaaactaa
     1501 attaatacta aaaaaattaa gaatttcaag aatcaaaaat cttgaaattc ttacactaaa
     1561 aaattaaagt gctttttttg cggcctctgc aatttttgca aaagcagcag catcattcat
     1621 agctaaatct gctagaattt ttctatcaag ttcaacacct gcttttttaa ggccattgat
     1681 aaatcttgaa taacttaaat cattgagtct gcaagcagca ttgatacgca caatccaaag
     1741 acggcggaag tctctttttt tacggcgtct atcacgataa gcatagacta gacttctttc
     1801 taattgttct tttgcttttc taaaatgttt gcgtcgtcca ctataaaaac cacgcgctaa
     1861 ttttaaaact tttttatgtc tgcggcgtct aacaacacct gtttttactc ttgccatttt
     1921 tatttccttt cataaagtgg cgtccaaatt tggagcttgc ccttgaaatt ttatctcaga
     1981 ggggagtttg aatgactttt agtcaaaaac ttaaattcct agcatttttt caacagcttt
     2041 tacatttgtg ctatgcacat atttagctgt gcgaagatca cgcattcttt ttgcaggttt
     2101 tttagtcaaa atatgacttc taaaagctga gcctcttttg attttatttt tacctacttt
     2161 gaagcgttta actgcgcttt taacgctttt catctttggc atacgctttc cttatttaga
     2221 taaattttta tttttcaaac tttaaaagaa aagataaata ctatcaaatt ttttctaatt
     2281 tttgactgaa tttaattttt aaaaaacttg gcacgcattt tgcttataaa aaaatcagca
     2341 atattttgga aagatttaaa atgactataa attcggcaaa tccatatcaa aatttaacct
     2401 tatctaatcc tttgcagaat agctctgctc taaatttgat taaagatagc aaagccttag
     2461 atcaaaaagg aaatgaaaat agcttagaac aattaagtta tatttttaat aatatcactt
     2521 atgctagtga atttggattt agaatcaatg aagaaggttt ttttgataaa gatttaaata
     2581 aaattgcaaa tataccagaa tcttatgata tcaacattaa aagcgttaga agcatagcga
     2641 aagaactcgc aaaacaagat gaaaatttaa actacaataa aattgatcta ccttatcttt
     2701 taaatagcta tcatagttca ttaaaatcta taaattcaga atttttacaa gatgataatg
     2761 cttatttaag tcgcgatctt atttcaaaac tatcatcagg tttttcaaca gataatggag
     2821 aatttttagg ccaaatttca agaatttaca acaatcaaga agaaattgat ttggcattaa
     2881 gtaatatcac aaatttaaat actttaatgt tagataataa aataactaat tttcactttg
     2941 ataaagccat agaaaacact tcttctaatg aaattttaaa accttattta actaaaaatg
     3001 cagaagtatc aaaatctggt cttttaatga attttattta ccatgatata aaaactcaaa
     3061 acgaaaaaga atttaacttt tttatgaaac ctgccacttt agaactaagc tctcatcaaa
     3121 atttacaaaa aattctcaag ggtgaaacag atatagaaga ttacatcaaa aaagaaaatg
     3181 aaaaaaagat gagttttgat ctttatcttt atgtgaatgg cgtagataaa aaaacaagta
     3241 ctcaagataa actatctgta ttttttcaac aatatattaa ctaccaaaaa gatatggatt
     3301 taagagaatt tgcaaattca agttcaatat ttcaaattta tatcgatcaa aatcgcaatg
     3361 attttgatgc tcttaaaaaa caatatcaaa accaaagtca agatacgcaa agattagaag
     3421 aagcaaatca actacgttct agctctatag aaaatttttt agatcgtcgt caaaaacaag
     3481 caaatataaa taaaatttt
//
LOCUS       DBBXPZ010000121         3280 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.123, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000121 DBBXPZ010000000
VERSION     DBBXPZ010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3280)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3280)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3280
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.123"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            1..1466
                     /locus_tag="ACJFD7_001693"
                     /pseudo
     CDS             1..1466
                     /locus_tag="ACJFD7_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782092.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1478..2779
                     /locus_tag="ACJFD7_001694"
     CDS             1478..2779
                     /locus_tag="ACJFD7_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860464.1"
                     /translation="MSSNKDIYEIYTSNGLILEVDKNTNQIIFDKRKDGREVGKYTQE
                     YSKALFEADRILRNSPYKDYQPQYLDPEFHTGEKSTLLEFKDWQSIYLKDPIKGSIAP
                     WTKAEKAYYKSLKTKKERYKYLVIRSGIRSVVIDIPYEAIGAVDEKGNVDPKYEKLYR
                     IVDDNKHNLRSSLFHNEWGMAAGILGDYKYLANDMFQNGFNARFIQATILYIQLSGGS
                     SILDKPHLLGAIYGYADIAVGSGLVGVHKNPLREQEIKTLAKTLKPDEFGMLPFIDEI
                     MGVDWVIDYNEYQISEDEFGSMYKALRSDIVEGKIKDPRDIDSTYESRREFDRYMDGY
                     SNGMINAYGYDIPNDRSEESAQLRIDSMILTAKLAALTPPQGYPNAPRYFTPEKLEWY
                     YKRHKLDRLLDPRIPAIYRYNFPEDLRAKIRAYAKEHNIKE"
     gene            2802..>3280
                     /locus_tag="ACJFD7_001695"
     CDS             2802..>3280
                     /locus_tag="ACJFD7_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860465.1"
                     /translation="MQKILQIDLEKRKALENFKNLALLGLGGTMLLNLKEQALDFSQE
                     LTYINTYDKYLNLKLDSFYIPSTLLSLLQLTKKSKEAFYINVLINSNTHYKNPLLQYA
                     ITQKQEQENIVYALKNNENLNASFANLNALKLALEEKNFYLNFIDLNSKESLLSFYN"
BASE COUNT         1339 a          364 c          510 g         1067 t
ORIGIN      
        1 tgaattagcc aaagctatgt ttgaaaatga tttcgaagaa gaagatcaaa cttatgtaaa
       61 ttttttaaaa accttaaatg aaagctttga tgaggagatt gaatttgaag aaaatataca
      121 aacagacaaa actcttcctt caaaaaaaga tttagataaa agcattcaag atattatgct
      181 tgataaagaa cttgcaaaat tatctataga tattactttt tttaatatca ttaagcaact
      241 ttttcctttt acagaatttt ttatgagtca gcctgatttt tttaaaaaaa tgattttatt
      301 ttttataaat tcaagcttag ataaaaagta ttatggtaat aaattatttt ctagttttaa
      361 agcacatttt tttaaagaac tagggatatt ttatgcgctt agccctaagg ggcgttttat
      421 aaaaattaat ccaaaaagta aaaaatcact caataagctt tttttatatc aaataggaac
      481 aaattattat tattttaatc aattagaata tgcaagtgaa ttaaaaaagt caaagagttt
      541 ttcaagattg gataaagcta agcaaattca tttaatatca aaagtaagaa aacaattagc
      601 cattgatttt tctattaaag taagtaaaaa tttaagtgta gatgtgttaa aaaatttagc
      661 aggatctttt attgatacac ttttgcctac aaattatgaa agattgaaaa ttttatatga
      721 aaaactaatg tatgaaaaat ttacttacaa ttatgatttt cctttagctg taaaaaaaga
      781 agaatactta acctatcctt tattgataaa ttctagattt atgagttttg atttatctga
      841 gtttattttt ggttctttat tatgcacagg tgggcttaat tattatccta gtattgcttg
      901 tgctacaact tcaagtgaag ctagggaatt tgccttaaaa agacttttat cttatattat
      961 tttagatgaa aaaagaagtg cttttatgga agataaaatc aatgaaggca aatacatctt
     1021 aaatgataag gaattttttg aaaaaaaaca atatagaact tagaaattgt aatatatata
     1081 agctagagca ttttcaaaga aaagaagagt ataaaataca acacccagtg ataaaacaac
     1141 accctatctt agcttataat gatgctatac aaattttata tgaatatgca aatgggattt
     1201 ataataccac tcaagatgaa aaaggtaagt tcatagaaga taggcaaaag gcaagaagat
     1261 tgatggaaaa tttagaagcc ataggacaac ataatttaga agtgatgtat agagggataa
     1321 atgaagaata tgttgataat gaaagaaata gaagaaaaga aaaagaagat tttaatgata
     1381 ttaataaaat acaagattat tctaataaat tcataggtag actagctaca actataatca
     1441 tggaagatgg tttatatata ggatgaaagg ataaataatg agcagtaata aagatattta
     1501 cgagatttat acttctaatg gacttatatt agaagttgat aaaaatacaa atcaaattat
     1561 atttgataaa agaaaagatg ggcgtgaagt aggcaaatac acccaagaat attccaaagc
     1621 tttgtttgaa gctgatcgta tattaagaaa ctccccctac aaagactatc aaccccaata
     1681 cctagatcct gaatttcaca caggggagaa atctacttta cttgaattta aagattggca
     1741 aagtatttat ttaaaagatc ctatcaaagg aagcatagct ccttggacta aagcagaaaa
     1801 agcttattat aaatctttaa aaactaaaaa agaaagatat aaatatttag ttataagaag
     1861 tggtataaga agtgttgtta tagatatacc ttatgaagct ataggagctg tagatgaaaa
     1921 aggaaatgta gatcctaaat atgaaaaatt atatagaata gtagatgata ataaacataa
     1981 tctaagatca agtttatttc ataatgaatg gggtatggca gcaggaatat taggtgatta
     2041 taaataccta gctaatgata tgtttcaaaa tggttttaat gcaagattta tacaagctac
     2101 tatactttat atacaactaa gtggaggaag tagtatatta gataaacctc atttattagg
     2161 tgctatttat ggttatgcag atattgctgt aggaagtggt ttagtaggag tgcataaaaa
     2221 tcctttaaga gaacaagaga ttaaaacctt agctaagact ttaaaacctg atgaatttgg
     2281 tatgcttcct tttatagatg agattatggg agtagattgg gtgattgatt ataacgaata
     2341 tcaaatttct gaagatgaat ttggaagtat gtataaagcc ttaagaagtg atatagttga
     2401 aggtaagata aaagatccaa gggatataga ttctacttat gaaagcagaa gagaatttga
     2461 tcgttatatg gatgggtatt ctaatggtat gattaatgct tatggttatg atattccaaa
     2521 tgatcggagt gaagaaagtg cacaattaag aatagattct atgatattaa ctgccaaact
     2581 agcagcccta actcctcctc aaggctatcc taatgcacca agatatttta cccctgaaaa
     2641 actagaatgg tattataaaa gacataagct tgatagactt cttgatccaa gaattcctgc
     2701 tatttataga tataatttcc cagaggattt aagagctaag ataagagctt atgctaaaga
     2761 gcataatata aaagagtaaa ccacaaaaga aaggaaaaac aatgcaaaaa atacttcaaa
     2821 tcgatttaga aaaaagaaaa gctttagaga atttcaaaaa tctagcttta ttaggattag
     2881 gtggaacaat gcttttaaat ttaaaagaac aagctttgga ttttagtcaa gaattaactt
     2941 atataaatac ttatgataag tatttaaatt taaagcttga ttctttttat atcccttcta
     3001 cacttttatc tttgcttcaa ttaactaaga aaagcaaaga agctttttat atcaatgttt
     3061 taatcaatag caatacacat tataaaaatc ctttattaca atatgctatt acccaaaaac
     3121 aagaacaaga aaatatcgtt tatgctttaa aaaataatga aaatcttaat gcttcttttg
     3181 caaatcttaa tgctttaaaa ttagccttag aagaaaagaa tttttatctt aattttatag
     3241 acttaaacag caaagaaagt cttttaagtt tttataatca
//
LOCUS       DBBXPZ010000122         3208 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.124, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000122 DBBXPZ010000000
VERSION     DBBXPZ010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3208)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3208)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3208
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.124"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(15..1034)
                     /gene="flgS"
                     /locus_tag="ACJFD7_001696"
     CDS             complement(15..1034)
                     /gene="flgS"
                     /locus_tag="ACJFD7_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system sensor
                     histidine kinase FlgS"
                     /protein_id="HGG0860466.1"
                     /translation="MNESILKSLDSNEKETLQKGLESLIEQTYVIENEYKTLNENYNS
                     LRAMVDEIIEVLPSALWILDKEKNIILQNQEALKNPKLLSIISLDKIRDELEFEGRFY
                     AVKIIAHNEKTIVSATDISDEKRNERLASMGSVAAHLAHEIRNPIGSISLLASTLFAR
                     SELKNKHIVLEIQKAIARVERIVNSTLLFTKGVHINALNFNLLELKEECESAINSYNF
                     TSQIDFEISFLDKQICADKALLGLVLQNLIYNAIDAIEESECEKPMIKILASCDNEKI
                     CIRVYDNGCEIKDEKLVFEAFKTTKLKGNGLGLSLSKEIINAHKGELSFQSDPKNFYF
                     TLPLV"
     gene            complement(1038..1916)
                     /locus_tag="ACJFD7_001697"
     CDS             complement(1038..1916)
                     /locus_tag="ACJFD7_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF234 domain-containing protein"
                     /protein_id="HGG0860467.1"
                     /translation="MLYKRKNIKFKNFVDLHKNLSLSKLFDFYSVFEGFEKLNILNSE
                     DDVFVNIERILLDDYLKIKSYFALDETSSYALTLLAKNNRKRFSINRKIQHFKALSTL
                     KYLLETGIIKLEYSKEAKKIKDKRQKIKKELRSYVVQDKIIFNNHFTRFFFYFLKPNE
                     KLILQNRYKEVLECIKEKFELYQSFCFEQLSRELLEKKFNINGVQSYWDKNLELDLYY
                     QDENLCFVGEVKFKNKKICKNILNLLKSKAKSLNLAPNYYIIISKNGFSKEFDKICEQ
                     NLLLLDLNDFKILLEE"
     gene            1952..>3208
                     /locus_tag="ACJFD7_001698"
     CDS             1952..>3208
                     /locus_tag="ACJFD7_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HGG0860468.1"
                     /translation="MYLQISDLKKELILKKGILHFDFTASALALKCVEKEISKILPTY
                     ANTHSDSSLNSFKTQQTYEQARKDIKKSLSLDENFALIACGTGSSSAIKKFQELIGIY
                     IPPLVKERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFL
                     EKTLQKNKKRKIIASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISC
                     QYYDALFISSHKLIGGIGGSGLLAIKKDLCGNKPSFAAGGTVGYVSRTSQCYLCNEEA
                     LEEGGTPGILQLIRASLAFKIKDSIGIKNIEKKEEILKDYFFEKLKTIPNLILYAKNL
                     KTRLPIFAFNIKGISPFDIAYELSKKYHIETRAGCACAGPYGHDLLGLKDNQKLKTKP
                     GWLRISLHYTHEKEDIDYFFNALNKTI"
BASE COUNT         1134 a          504 c          420 g         1150 t
ORIGIN      
        1 aaagaaaata tttatcacac caaaggtaag gtaaaataaa aattcttagg atcactttga
       61 aaacttaact ctcccttatg agcgtttatg atttctttag aaagagacaa gccaagccca
      121 ttgcctttaa gttttgttgt tttaaaagct tcaaaaacca atttctcatc ttttatttca
      181 caaccattat catacactct gatacatatt ttttcattat cacaacttgc taaaatttta
      241 atcataggct tttcacattc gctttcttct atcgcatcaa tagcattata aatcaaattt
      301 tgcaaaacca aaccaagaag agctttatca gcacaaatct gcttatccaa aaaagatatt
      361 tcaaagtcta tttgagaagt gaaattataa gagttaatgg cactttcaca ctcttctttt
      421 aactctaaaa gattaaaatt taaagcattg atgtgtacac ccttagtaaa aagtagagtt
      481 gaatttacga tacgctccac tctagcaata gccttttgga tttcaagaac tatatgctta
      541 tttttaagct cactacgagc aaaaagggtt gaagcaagta aagatataga tccaatagga
      601 tttcttatct catgtgccaa atgagccgct acactaccca tgcttgcaag cctttcattg
      661 cgtttttcat cgctaatatc tgtagctgaa actatagttt tttcattatg cgctatgatt
      721 tttaccgcat aaaacctacc ttcaaattca agctcatcac gaattttatc aagactaatg
      781 atactaagta attttggatt tttcaaggct tcttgatttt gtaaaataat atttttttct
      841 ttatctaaaa tccaaagcgc actaggcaac acctctataa tctcatcaac cattgcgcgt
      901 aaggagttat agttttcatt taaagttttg tattcatttt ctattacata agtttgttct
      961 ataagacttt ctaagccttt ttgtagggtt tctttttcat ttgagtctaa actttttaaa
     1021 atactttcat tcatttatca ttcctctaat aaaatcttaa aatcattcaa atcaagtaaa
     1081 agcaaattct gttcgcatat tttatcaaat tccttgctaa aaccattttt tgagattata
     1141 atgtaataat ttggagccaa atttaaagac tttgcttttg attttaaaag atttaaaata
     1201 tttttacaaa tttttttatt tttaaattta acttctccga caaaacacaa attttcatct
     1261 tgataataaa gatcaagttc taaattctta tcccagtaac tttgcactcc attgatattg
     1321 aattttttct caagcaattc tctagaaagc tgttcaaaac aaaaactttg ataaagttca
     1381 aatttttcct taatgcattc taaaacttct ttatagcgat tttgcaaaat aagcttttca
     1441 ttgggcttta aaaaataaaa aaagaaacga gtaaaatggt tgttaaatat aatcttatct
     1501 tggacaacat aagatcttag ttcttttttg attttttgtc ttttatcttt tattttttta
     1561 gcttccttac tatactcaag ttttattata cctgtttcta aaagatattt aagtgtagat
     1621 aaagctttaa aatgttgaat ttttctattg atagaaaaac gcttacgatt gtttttagct
     1681 agcaaagtaa gagcataaga acttgtttca tctaaggcga aataactttt aatttttaga
     1741 taatcatcaa gcaaaattcg ctctatattt acaaatacat cgtcttcaga atttaaaata
     1801 tttaattttt cgaaaccttc aaacacacta taaaaatcaa aaagcttgct taaagacaaa
     1861 ttcttatgca aatctacaaa gttcttaaat tttatatttt tccttttata aagcattttt
     1921 atagtataat tttagcaaat ttttataagg attgtatttg caaatttcag atttaaaaaa
     1981 agaattgatc ttaaaaaaag gtattttgca ttttgacttc acagcaagtg ctttagctct
     2041 aaaatgtgta gaaaaagaaa tttcaaaaat tctcccaacc tatgcaaaca cacattctga
     2101 tagctctttg aattctttta aaactcaaca aacttacgaa caagcaagaa aagatataaa
     2161 aaaaagttta tcattagatg aaaattttgc ccttatagct tgcggaacag gatcaagcag
     2221 tgctattaaa aaatttcaag aattgatcgg catttacatt ccccctcttg taaaagaaag
     2281 atattttacg caaattgata aaaatacctt acctttagtt atcgtagggc cttatgagca
     2341 tcattctaat gaactttcat ttcgagaagg cttgtgcgaa tgtattagaa ttcccttgga
     2401 taaaaatggg gaaattgatt ttgattttct agaaaaaact ttacaaaaaa acaaaaaaag
     2461 aaaaataatc gctagctttt ctttagcttc aaatgttact gggatattaa gtgattacaa
     2521 acgcatttct gaaatggttc gtaaatttaa agggatagtt gcttttgatg catctagttt
     2581 cattccctat aaaaacatat cttgtcaata ctatgatgcg ttgtttataa gttctcataa
     2641 attaatcggt ggtattggcg gttctggact tttagctatc aaaaaagatc tttgtggaaa
     2701 caagcctagc tttgcagcag gtggaactgt gggctatgtt tctcgcactt cacaatgcta
     2761 cctttgcaat gaagaagctt tagaagaagg aggaacacct ggaattttac aactcattcg
     2821 cgctagctta gcttttaaaa tcaaagattc tatagggatt aaaaatatag aaaaaaaaga
     2881 agaaattcta aaagattatt tttttgaaaa actaaaaact atacctaatt taattttata
     2941 cgcaaagaat ttaaaaaccc gattgcctat ttttgctttc aatatcaaag gaatttctcc
     3001 ttttgatatc gcttacgaac ttagtaaaaa ataccacata gaaacacgcg ctggatgtgc
     3061 ttgtgctggg ccttatggtc atgatttgct aggcttaaaa gataatcaaa aacttaaaac
     3121 aaaaccaggt tggttaagaa taagcttgca ttatacgcat gaaaaagagg atattgatta
     3181 tttttttaat gctttaaata aaactata
//
LOCUS       DBBXPZ010000123         3189 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.125, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000123 DBBXPZ010000000
VERSION     DBBXPZ010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3189)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3189)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3189
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.125"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..1309
                     /locus_tag="ACJFD7_001699"
     CDS             <1..1309
                     /locus_tag="ACJFD7_001699"
                     /EC_number="2.7.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:1900727 - osmoregulated periplasmic glucan
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HGG0860469.1"
                     /translation="VYFISFYGVLIDSDMIQNVVQTDIKEVKDLLNLKLILFVVLALL
                     LVFYVVKVKIDYYGSFKSHLKIKIINIISGLIVVCAVLIPLSKTFLPFFRNYNEIRMY
                     NTPFYQIYAVYRYYVRFVKAKPEFKTIANDAYRENNHTKKLLVLVVGETARAANYSLG
                     GYAKNDTNFYTKKDNVVFFDNFSSCGTATAVSLPCMFSISKRENYSSSEFQENAMDVL
                     YKTGVDTAWFDNNSGGCKGVCDRLAYKQKLSSDLDENLLAPFKEKLNHLSDQNIIVLH
                     LQGSHGPTYYKRYPSEFKKFTPTCDTNELSKCDSEALINTYDNTLLYTDYLLSEIIKL
                     LKEQKSYESSLFYLSDHGESLGENDIYLHGMPYAIAPSYQTRIPAIFWSNDEKLMNLA
                     KEHKGLKLSQDNLFSTLLGYFDVKTSVYEPEYDLLNPKLKANP"
     gene            1306..1662
                     /gene="dgkA"
                     /locus_tag="ACJFD7_001700"
     CDS             1306..1662
                     /gene="dgkA"
                     /locus_tag="ACJFD7_001700"
                     /EC_number="2.7.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004143 - ATP-dependent diacylglycerol
                     kinase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HGG0860470.1"
                     /translation="MKPKYHFLNNARYALEGIFALFKNEMAFRIELCIIIPAIICSFF
                     LKVSFLEHLLLVSVLMLILIIEALNSAIEACVDLITNEWHEKAKIAKDCASAAVFFSV
                     LLALFVWGFILYNIYL"
     gene            1659..1904
                     /locus_tag="ACJFD7_001701"
     CDS             1659..1904
                     /locus_tag="ACJFD7_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006276 - plasmid maintenance [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HGG0860471.1"
                     /translation="MKFENLIREILGKKRFELLKFLCENADENGFIMIKISELEEKLH
                     QSKPTIIATFKFLEEKKLFKRLKNGFYQLNIGDKNET"
     gene            1894..2901
                     /gene="pyrC"
                     /locus_tag="ACJFD7_001702"
     CDS             1894..2901
                     /gene="pyrC"
                     /locus_tag="ACJFD7_001702"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004151 - dihydroorotase activity
                     [Evidence IEA];
                     GO_process: GO:0019856 - pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HGG0860472.1"
                     /translation="MKLKNPLDMHLHLRDNQMLELIAPLSARDFCAAVIMPNLIPPLC
                     NLEDLKAYKMRIIKACKDENFTPLMTLFFENYDEKFLYSAKDEIFGIKLYPAGITTNS
                     NGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVMDRESNFAKIYEKLAKHFPRLK
                     IVMEHITTKTLCELLKDYENLYATITLHHLIITLDDVIGGKMNPHLFCKPIAKRYEDK
                     EALCELAFSGYEKVMFGSDSAPHPRDTKECCGCAAGVFSAPVILPVLAELFRQNSSEE
                     NLQKFLSDNACKIYDLKFKEDKILTLEEKEWQVPNVYEDKYNQVVPYMAGEILKFQLK
                     H"
     gene            complement(2933..3147)
                     /locus_tag="ACJFD7_001703"
                     /pseudo
     CDS             complement(2933..3147)
                     /locus_tag="ACJFD7_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343702.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1132 a          392 c          529 g         1136 t
ORIGIN      
        1 tgtttacttt attagttttt atggggtgct tatagattct gatatgatac aaaatgttgt
       61 tcaaacagat atcaaagaag taaaagattt gttaaattta aaattaatct tatttgttgt
      121 tttggcttta ttgttggttt tttatgttgt taaagtaaaa attgattatt atggtagttt
      181 taaatcccat ctaaaaatta aaattatcaa tataatatca ggtttgattg ttgtttgtgc
      241 ggttttaatc cctttaagta aaactttctt gccttttttt agaaactata atgaaataag
      301 aatgtataat accccttttt atcaaattta tgccgtatat cgctattatg ttcgttttgt
      361 aaaagctaag ccagaattta aaactatagc taatgatgct tatagagaaa acaatcacac
      421 taaaaaactt ttagttttgg tagtgggtga aaccgctaga gcggcaaatt actctttggg
      481 tggatatgct aaaaatgata ccaattttta taccaaaaaa gataatgtag tgttttttga
      541 taatttttca tcatgtggaa cagcaacagc ggtaagttta ccttgtatgt tttctatttc
      601 taagcgtgaa aattattcaa gttcagaatt tcaagaaaat gcgatggatg tgctttataa
      661 aacaggtgta gatactgcat ggtttgataa taattctggt ggttgtaaag gggtttgtga
      721 tagattagct tataagcaaa agctttctag tgatttggat gaaaatttac tcgctccttt
      781 taaagaaaaa ttaaatcatt taagtgatca aaatataata gttcttcatt tgcaaggttc
      841 ccatgggcca acttattata aacgctatcc aagtgaattt aaaaaattca ctccaacttg
      901 tgatactaat gagctttcaa aatgtgatag cgaggcttta atcaacactt atgacaatac
      961 tttactttat acagattatc ttttaagtga gattataaaa ctattaaaag agcaaaaaag
     1021 ctatgaaagt tctttgtttt atctttcaga tcatggtgaa agtttgggtg aaaatgatat
     1081 ttatcttcat ggtatgcctt atgctatagc gccaagttat caaacccgta ttcctgctat
     1141 tttttggagt aatgatgaaa aattaatgaa tttagctaaa gagcataaag gtttaaaact
     1201 ttctcaagat aatcttttta gtactctttt aggatatttt gatgtaaaaa caagtgttta
     1261 tgagccagaa tatgatttat taaatcctaa acttaaggca aatccatgaa gcctaaatat
     1321 cattttttaa ataatgcaag atatgcttta gaagggattt ttgctttatt taaaaatgaa
     1381 atggcgttta gaattgaact ttgtattatt atcccagcga taatttgtag ttttttctta
     1441 aaagttagtt ttttggagca tttattgttg gtaagtgttt taatgcttat tttaattatc
     1501 gaggctttaa attcggctat tgaagcttgt gttgatttga ttacaaatga atggcatgaa
     1561 aaggcaaaaa ttgctaaaga ttgtgcgagt gcggcagtgt tttttagtgt gcttttagct
     1621 ctttttgttt ggggctttat tttatataat atttacttat gaaatttgaa aatttaatac
     1681 gagaaatttt aggaaaaaag cgttttgaat tgttaaaatt tttatgtgaa aatgccgatg
     1741 aaaatggttt tattatgatt aaaatcagtg aacttgaaga aaaactacat caaagtaaac
     1801 ctaccatcat cgctactttt aagtttttag aagaaaaaaa actttttaag cgtcttaaaa
     1861 atggatttta tcagctaaat ataggagata aaaatgaaac ttaaaaatcc tttagatatg
     1921 catttgcatt taagagataa tcaaatgtta gaacttattg cacctttgag tgcaagagat
     1981 ttttgtgcag ctgtgattat gccaaattta atccctccac tttgcaattt agaagatcta
     2041 aaagcttata aaatgcgtat cattaaggct tgtaaagatg aaaatttcac tcctttaatg
     2101 acactttttt ttgaaaatta tgatgagaaa tttctttaca gtgctaaaga tgaaattttt
     2161 ggcattaagc tttatccagc aggaattaca acaaattcaa atggcggagt ttcaagtttt
     2221 gatatagagt atttaaaacc tactttagag gctatgagtg atttaaatat tcctttgcta
     2281 gtgcatggag aaaccaatga ttttgtaatg gacagggaaa gtaattttgc taaaatttat
     2341 gaaaaattag ccaaacattt tccacgactt aagattgtta tggagcatat taccactaaa
     2401 actttatgtg aacttttaaa agattatgaa aatttatacg cgacaatcac tttacatcat
     2461 ttaatcatca ctttagatga tgttatcgga ggtaaaatga atcctcatct tttttgtaag
     2521 cctatagcca agcgttacga agataaagaa gccctttgcg aacttgcttt tagtggttat
     2581 gaaaaagtta tgtttggaag tgatagtgcg cctcacccaa gagatactaa agagtgttgt
     2641 ggttgtgccg caggtgtatt tagcgcccca gtgattttac ctgtgttggc tgaattattt
     2701 aggcaaaata gttctgaaga aaatttgcaa aaatttttaa gcgataatgc ttgtaaaatt
     2761 tatgatttaa aatttaaaga agataaaatt ttaactttag aagaaaaaga atggcaagtg
     2821 ccaaatgttt atgaagataa atacaatcaa gtcgtgcctt atatggctgg agaaatttta
     2881 aaatttcaat taaaacattg atttcccacc ttaaaggtgg aaaatttaag ctttatttac
     2941 aagagcatct ctgatatcta taacaagata gattacaaaa aaacttaaaa ataaagcaat
     3001 aaaactgact atcagcgata ataaaccagc taaaaatcca atgctaaaca tcataaaaag
     3061 agaataaagc aaagctacaa caaaacttat cgctgcaatt gcatcaagaa tcaagcgtcc
     3121 aaatttgatg attaaatttt taaccattaa aaactccttt gaaataatga gtgaaattgt
     3181 aataaatat
//
LOCUS       DBBXPZ010000124         2919 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.126, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000124 DBBXPZ010000000
VERSION     DBBXPZ010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2919)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2919)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2919
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.126"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(33..680)
                     /locus_tag="ACJFD7_001704"
     CDS             complement(33..680)
                     /locus_tag="ACJFD7_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin family protein"
                     /protein_id="HGG0860473.1"
                     /translation="MRQYETYKCQKCGNEVEVQNVGGGKLSCCGEEMKCITTDLTAVN
                     LMKAFAGESMARNKYDLFADVAEEEGWHAVARHFREAAENEKWHARAEFKAYHEIVDG
                     KPLEVTTKNLVSAAEGENYEHTTMYPNFAKIAEDEGKKAIARLFTAIGKVEIEHEREY
                     LALKKMLEEEEFFNSEVEELWVCEVCGHIHRGKKAPAACPLCKAPKEYFKREFLG"
     gene            840..2516
                     /gene="ilvD"
                     /locus_tag="ACJFD7_001705"
     CDS             840..2516
                     /gene="ilvD"
                     /locus_tag="ACJFD7_001705"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004160 - dihydroxy-acid dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HGG0860474.1"
                     /translation="MRSDAIKKGHLKAPNRSLLRACGLKDEDFDKPFIGVANSYIDII
                     PGHYFLNDYAKIIKDEIRKNGCVPFEFNTIGVDDGIAMGHEGMLYSLPSREIIANSIE
                     TVMNAHQLDALICVPNCDKITPGMLMGALRVNVPTIFVSGGPMASGVTKKGEKISLSS
                     VFEAVGAYEAKKISEEEFKDIECSACPSGGSCSGMFTANSMNTLCEAMGIALEGNGTI
                     LALSKEREELLRKAARRICEIALDERFKIRNIITQKAVRNAMVVDMAMGGSSNTVLHM
                     LAISREAGVALDIKDLNFISSKVAHIAKIAPSLNSVYMDDIHKAGGVSAVMAEISSRQ
                     GHILELDALTITGESLKERLKNAKIKDENIIRKVDNAYSKVGGLAILFGNLAEQGCVI
                     KTAGIIGERKFKGKAVCFNSQDEAIKGIIKGKVQKGNVCVIRYEGPKGGPGMQEMLSP
                     TSLLMGMGLGADVALITDGRFSGATRGLSVGHISPEAAEGGLIGLLKDGDEIEIDVDA
                     YTIHANVSEEEIAKRKKEFALPQKEVSSRWLRMYQKLVSNASKGAVLDME"
     gene            complement(2528..2919)
                     /locus_tag="ACJFD7_001706"
                     /pseudo
     CDS             complement(2528..2919)
                     /locus_tag="ACJFD7_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343486.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
BASE COUNT          960 a          484 c          546 g          929 t
ORIGIN      
        1 tattatctta aaaaggataa gaatttctta acttaaccca aaaattcgcg tttaaaatac
       61 tcttttggtg ctttacataa aggacaggct gctggagctt ttttgccacg atgtatatgt
      121 ccgcatactt cacaaaccca taattcttct acttcgctat taaaaaattc ttcttcttca
      181 agcatttttt taagcgctag atattctctt tcgtgttcga tttctacttt accaatagct
      241 gtaaataatc ttgctatagc ctttttacct tcatcttcag caatttttgc aaaatttgga
      301 tacatagttg tgtgctcata gttttcacct tctgcagcac ttactaggtt ttttgtagtt
      361 acttctaaag gttttccatc aacgatttca tgataagctt taaattctgc tcttgcatgc
      421 catttttcat tttcagctgc ttctctaaaa tgtctagcaa ccgcatgcca accttcttct
      481 tcagctacat cagcaaataa atcgtatttg tttctcgcca tagattcgcc cgcaaaagct
      541 ttcatcaaat ttactgcagt taaatctgta gtgatacatt tcatttcttc accacaacaa
      601 ctaagcttac ctccacctac attttgaact tctacttcat taccacattt ttggcattta
      661 taggtttcat attgtctcat tttgactcct tttttgatta tcaaaaagca ttgtattata
      721 aaaaaatatt tttgtcaatt aataattttt atcatttatg aaaatgtata tcaaaataaa
      781 tttcacaaaa attaagcttt gctaaatata attttaaaaa attattatca ggagttacaa
      841 tgagaagcga tgcgataaaa aaaggacatt taaaagcacc taatcgttct ttacttcgtg
      901 cttgtggttt gaaagatgaa gattttgaca aaccttttat aggtgtagca aatagctata
      961 tagatataat cccagggcat tattttttaa atgattatgc taaaatcatt aaagatgaga
     1021 tacgcaaaaa tggttgtgtg ccttttgagt ttaataccat aggtgtagat gatggtatag
     1081 ctatgggaca tgaaggtatg ctttattctt taccaagtcg tgaaatcatc gcaaattcca
     1141 ttgaaacagt gatgaatgct catcaacttg atgctttaat ctgtgttcca aactgcgata
     1201 aaatcactcc tggtatgtta atgggagctt taagagtaaa tgttccaacc atttttgtaa
     1261 gtggtgggcc tatggcttca ggggtaacta aaaaaggaga aaagatcagc cttagctctg
     1321 tttttgaagc tgtaggggct tatgaagcca aaaaaattag cgaagaagaa tttaaagata
     1381 tagaatgttc agcctgtcca agtggtggat cttgctcggg aatgtttaca gcaaattcta
     1441 tgaatacctt atgcgaagct atgggtatag cactagaagg taatggaacc atcttagctt
     1501 taagcaaaga aagagaagag cttttaagaa aagcagcgcg tcgtatttgt gaaatcgcct
     1561 tagatgagcg ttttaaaatt cgcaatatca tcactcaaaa agccgtgcgt aatgctatgg
     1621 tagtagatat ggcaatgggt ggaagtagca atactgtttt acacatgctt gccatttcgc
     1681 gtgaagcagg ggtggcacta gatattaaag atttaaattt catctcaagc aaagttgcac
     1741 acatagcaaa aatagccccg tcgctaaata gtgtttatat ggatgatatc cacaaagcag
     1801 gcggtgtgag tgcagttatg gctgaaattt caagcagaca aggacatatt ttagaacttg
     1861 atgcactgac cattacagga gaaagtctca aagaacgctt aaaaaatgcc aaaatcaaag
     1921 atgaaaatat cattcgtaaa gtagataatg cttactcaaa agtaggtggg cttgccattt
     1981 tgtttggaaa tttagccgag caaggttgcg ttataaaaac cgcaggaata atcggagaaa
     2041 gaaaatttaa aggcaaagct gtttgtttta actctcaaga tgaagctata aaaggcatta
     2101 tcaaaggcaa ggtgcaaaaa ggaaatgttt gtgtaatacg ctatgaaggt ccaaaagggg
     2161 gtcctggtat gcaagaaatg ttaagtccta cttcactttt aatgggtatg ggtttaggtg
     2221 ctgatgtagc tttaatcacc gatggtcgtt ttagcggggc tacaaggggt ttaagcgttg
     2281 gtcatatttc ccctgaagca gctgaaggtg gtcttatagg acttttaaaa gatggagatg
     2341 aaatagaaat tgatgtagat gcttatacta tccatgcaaa tgtaagtgaa gaagaaattg
     2401 ctaaacgtaa aaaagaattt gcattgcctc aaaaagaggt gtcttcaaga tggcttagaa
     2461 tgtatcaaaa acttgttagc aatgctagta aaggtgcggt tttagatatg gaatgaaagg
     2521 tttcctttca ttcttctatt tctttggtta tacgatttct tatatctcta cgaactattt
     2581 ccatgcccca cagccaaaca atatggccaa aaattttaga caggtgttca tcaaaaggaa
     2641 tttcagaaag tggtggaact tctgcaatta aaggcattac aataacatgg gcaaaaagat
     2701 aaacaaaaaa tccaaaaact gcacctttca gtaggtaagc ctagttgttc tagaaaaatt
     2761 ttaggtggag taacacgttc taaagcatct gctggtcaaa aaacattggg atttcttgga
     2821 ggaaaaggta cttcccaacc ccatttaaca atagctccga aaatacccgc taatatacct
     2881 ataaaaaagg ctaaagtata gcgcttttga aagtatttt
//
LOCUS       DBBXPZ010000125         2909 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.127, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000125 DBBXPZ010000000
VERSION     DBBXPZ010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2909)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2909)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2909
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.127"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            3..791
                     /locus_tag="ACJFD7_001707"
     CDS             3..791
                     /locus_tag="ACJFD7_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta domain-containing
                     protein"
                     /protein_id="HGG0860475.1"
                     /translation="MIALFSLLNGDELTEALAKNNNQNSWEHFDYKNTKEAPKIQEEN
                     VDFKSTFDSLLSKTLENNNGIDKTDGNLDFQNENAQVKNLSSLYEGENNSLLFQKELF
                     VAQDNYNYSGGLINRYEKDDFLFGVNGFIDKQKEQKDTKSFGTEFGYSKFIKAYSNYY
                     IPNEAEKKLQLGMSFVIPTYTAFAFDISKDNDKTNYQVSYSPYSVFSLNLLRRDYSAR
                     ETVDDTVVQVGFSFNFNESFLKQFKKKDNTLEEVNRYDFLQRTH"
     gene            complement(788..2164)
                     /locus_tag="ACJFD7_001708"
     CDS             complement(788..2164)
                     /locus_tag="ACJFD7_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HGG0860476.1"
                     /translation="METLSQTLAERKPPLYKRIIKSLGFWVIIGIITGIVLGYTDKEL
                     AIASKPGVDYFIGALKVLIGPIIFVTLVLGIISLESLKKVGSIGAKAVIYFEVVSTLA
                     LAIGIFMANVMQPGHGMNLDPSQLDTKSVQKYISQTTEVSASSEIMHILKDAMPTDII
                     TPFTEGKTIQVLVIAIITALIISLMRIEDKQAIQRVFEVVQNFVFKILQIIMYFSPIA
                     AFSAMAVLIAQYGIGSLINLAYLLLVMLISCLVFIFGILGLICYFAKVNIFKFMRFIS
                     REVLIVFATSSSESALAPLMRKLEKAGLSKTTVGLVLPTGYSFNLDCTNIYLAMSLIF
                     LAQAFNVNLSLAHEISILIVLMIASKGAVGVTGSGFIVLGSTLAALGNMEISEANATL
                     AQVLPVAAIGVLLGVDKFMSEMRAVGNLCGNSVAALIVAIWDKQIDWEKFRYAMDNPE
                     KFHNAGMN"
     gene            2433..>2909
                     /gene="cetC"
                     /locus_tag="ACJFD7_001709"
     CDS             2433..>2909
                     /gene="cetC"
                     /locus_tag="ACJFD7_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetC"
                     /protein_id="HGG0860477.1"
                     /translation="MKEIVLSENALITSKTDLKGNIIYANNDFLKYAGYKVGELLYKP
                     HNIVRHEDMPRTVFKCLWDYIQKGDEIFAFVKNKSKDGNFYWVFANVSASFDANGDII
                     NYYSVRRAPNRKSLSIIEEVYKILLEKEQKSGINAGVSALMDIVSSYKMTYNELIFN"
BASE COUNT         1039 a          414 c          436 g         1020 t
ORIGIN      
        1 atataatagc attgttttct ttactcaatg gcgatgaact tacagaggct ttagcaaaaa
       61 ataataatca aaattcttgg gagcactttg attataaaaa taccaaagaa gctccaaaaa
      121 ttcaagaaga gaatgtggat tttaaaagca cttttgatag cttactttca aaaactttag
      181 aaaataataa tggtatagat aaaacagatg ggaatttaga ttttcaaaat gaaaacgcgc
      241 aggttaaaaa tttaagttct ctttatgagg gggagaataa ttctttgctt tttcaaaaag
      301 aactttttgt ggctcaagat aattataatt actcaggggg tttaatcaat cgttatgaaa
      361 aagatgattt tttatttgga gttaatggtt ttattgataa acaaaaagaa caaaaagata
      421 ctaaaagttt tggtacagag tttggttata gtaaatttat aaaggcttat agtaattatt
      481 atatacccaa tgaagcagaa aaaaaattac agcttggaat gagttttgta attccaactt
      541 ataccgcttt tgcttttgat ataagtaagg ataatgataa aactaattat caagtatctt
      601 actctcctta tagtgtattt agtttaaatt tattgcgtcg tgattatagt gcaagagaga
      661 ctgttgatga tactgttgtt caagttggat ttagttttaa tttcaatgaa agttttttaa
      721 agcaatttaa aaaaaaagat aatactttag aggaggttaa tcgatatgat ttcctccaaa
      781 gaactcatta gttcattcca gcattatgaa atttttctgg attgtccata gcgtagcgga
      841 atttttccca atcaatttgt ttatcccaga tagcaacgat taaagctgct actgaatttc
      901 cgcaaagatt tccaaccgct ctcatttcag acataaattt atcaacacct aaaagaacac
      961 ctatagcagc tactggtaga acttgtgcta aggttgcatt tgcttctgaa atttccatat
     1021 ttcctagagc cgcaagcgta cttccaagca ctataaaacc tgatccagtt acacctactg
     1081 caccttttga ggctatcatt aatactatta aaatactgat ttcgtgtgct aaacttaaat
     1141 ttacattgaa agcttgtgct agaaagatta agctcatagc tagataaata tttgtacaat
     1201 caagattaaa actatatccc gttggtaaaa caagtccgac tgttgtttta gaaagtcctg
     1261 ctttttctag ttttctcatt aaaggagcaa gtgcagactc gcttgaactg gttgcaaaaa
     1321 cgatcaatac ttctcttgag ataaatctca taaatttgaa gatatttact tttgcaaaat
     1381 aacaaatcag acctaagatt ccaaatataa aaacaagaca tgaaatcagc attactaaaa
     1441 gtaaatatgc taagttgatc aaagagccaa ttccgtattg agctatgagt acagccattg
     1501 ctgaaaaggc ggcaatagga ctaaaataca taatgatttg tagaatttta aaaacaaaat
     1561 tttgtaccac ttcaaaaact ctttgaattg cctgtttgtc ttctattctc attaaagaaa
     1621 taatcaaagc agtaattata gcaataacta aaacttgtat ggtttttcct tctgtaaaag
     1681 gtgtgataat atcagtaggc atagcatctt ttaaaatatg cataatctca gagctcgcac
     1741 ttacttctgt ggtttgagaa atgtattttt gaacgctttt tgtatcaagt tgacttggat
     1801 caagattcat tccatggcct ggttgcataa catttgccat aaaaatacct atagcaagtg
     1861 ctaaagtact tacaacttca aagtaaataa ccgctttagc accaatgcta cctacttttt
     1921 ttaaactttc aagactaatg atgcccaaaa ccaaagtaac aaaaataata gggcctataa
     1981 gaacctttaa agcacctata aaataatcaa ctcctggttt gctagcaatg gctaattctt
     2041 tatctgtata gccaagtaca atacctgtaa taatgcctat aatcacccaa aatccaagac
     2101 ttttgataat acgtttatat aaaggcggtt ttctttcagc taaagtttga cttaaagttt
     2161 ccaagtttat tcactccttt tgatctttgt aaaatataat tttaacaatg tgtatcgtaa
     2221 attttaacaa aaaaacaaat ctagaaatac tttcttttat atgatatgat aattttttat
     2281 ataaacgtta caaaatttct cattatttgc attataaaat ttaaaatatt tttgaaaatt
     2341 ttataatttt gtaattcagt ttgctttttg ttatttatta ttggtaataa ttctattttt
     2401 gatttatttg ttttattggg atgttttaaa ttatgaaaga aatagttttg tctgaaaatg
     2461 ctttaattac ttctaaaaca gatcttaagg ggaatatcat ttatgccaat aatgactttt
     2521 taaaatacgc aggttataaa gttggtgaac ttttgtataa acctcataat atagtaagac
     2581 atgaagatat gccacgcact gtatttaaat gtctttggga ttatattcaa aaaggagatg
     2641 aaatttttgc atttgtgaaa aataaatcca aagatggtaa tttttactgg gtttttgcaa
     2701 atgtaagtgc ttcatttgat gctaatggag atatcatcaa ttattattct gttcgtcgtg
     2761 cacccaatag aaaatctctt tctataattg aagaagttta taaaatttta cttgaaaaag
     2821 agcaaaaatc aggcattaat gctggagttt cagctttaat ggatattgta agttcttata
     2881 aaatgactta taatgaactt atttttaac
//
LOCUS       DBBXPZ010000126         2878 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.128, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000126 DBBXPZ010000000
VERSION     DBBXPZ010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2878)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2878)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2878
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.128"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..935
                     /gene="trxB"
                     /locus_tag="ACJFD7_001710"
     CDS             <1..935
                     /gene="trxB"
                     /locus_tag="ACJFD7_001710"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADPH) activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0019430 - removal of superoxide radicals
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HGG0860478.1"
                     /translation="DVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSSEI
                     ENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTELA
                     KAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEALY
                     LANICSKVYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMGVTGVKVKL
                     KDGSIRDLNVPGIFTFVGLNVRNEILKQDDGKFLCNMEEGGQVSVDLKMQTSVAGLFA
                     AGDLRKDAPKQVICAAGDGAVAALSAMAYIESLH"
     gene            complement(973..2754)
                     /locus_tag="ACJFD7_001711"
     CDS             complement(973..2754)
                     /locus_tag="ACJFD7_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoX family phosphatase"
                     /protein_id="HGG0860479.1"
                     /translation="MERRLFLKGSALGSMVAFFASSNLSAVVLKDKDLLGFKAVNAST
                     QDKVIVPQGYEAKVLISWGDPLFSKAKPYDENKIIDMNAIKNAHLVFGDNDDGMSFFP
                     LSKNGGILAVNNEYINPEIMFNHHGKNLSKEDILYEQASVGVSILEIEKKGDDWTVVL
                     DSKYNRRIDANTKMQVSGAAKKEVLKNEKFVHGTFANCANGQTPWGTYITCEENFDDF
                     FGSSDENLEFNDSLKRYGFNKTSLYGWEKFDERFDLAKNINEANRFGWIVEINPFDAK
                     STPVKRTSLGRFKHENAEIIVEKDGSVIVYMGDDEMNEFIYKFVSKRKYKKGTDTSKI
                     LDEGTLYVGQFNGKVGDFKGQGKWIALEYGKNSLDEKNGFKSQAQVLINTRLAASIVG
                     ATPMDRCEWIASHKQSGSKEVFATLTNNKNRQEPNAANPRTKNVYGQILKWMPKNSHK
                     DDDFTWEIFALAGNPDNQQGLYKGSNNITSENKFNSPDGLKFDRDGRLWIQTDGSYSN
                     KDEYEGMGNNCMLAANPKTGEIRRFLTGPIACELTGIAFSEDYTTMFVGIQHPGEGLK
                     GSTFPYGKTPRSSVIMIRKLDGGVIGS"
BASE COUNT          908 a          488 c          466 g         1016 t
ORIGIN      
        1 tagatgtagc aatcataggt ggaggtcctg ctggacttag tgccggactt tatgcaacta
       61 gaggtggcct taaaaatgta gtaatgtttg aaaaaggtat gcctggtgga caaattacct
      121 caagttctga gatagaaaat tatccaggtg tagcccaagt tatggatgga atttctttta
      181 tggctccttg gagtgaacaa tgtatgcgtt ttggtttaaa acatgaaatg gttggagtag
      241 aacaaatttt aaaaaatagt gatggaagtt ttaccatcaa attagaaggt ggtaaaacag
      301 aacttgctaa agctgtgata gtttgtacag gctcagctcc aaaaaaagca ggttttaagg
      361 gcgaagatga attttttgga aaaggtgtaa gcacttgtgc aacttgtgat ggattttttt
      421 ataaaaataa agaagttgca gttttaggtg gtggagatac ggctttagaa gaagctttat
      481 atctagcaaa tatttgttct aaagtttatc ttatccaccg cagagatgag tttagagcgg
      541 ctccatctac agtagaaaaa gttaagaaaa atgaaaaaat agaactcatt actagtgcaa
      601 gtgtagatga agtatatggt gataaaatgg gtgttactgg tgtaaaagta aaattaaaag
      661 atggtagtat tagagattta aatgttccag gaatttttac ttttgttggt cttaatgtaa
      721 gaaatgaaat tttaaaacaa gacgatggta agtttttatg caatatggaa gaaggtgggc
      781 aagtaagtgt tgatcttaaa atgcaaacta gtgttgctgg actttttgcc gcaggagatc
      841 ttagaaaaga tgcacctaag caagtgattt gtgctgcagg tgatggagct gtagctgcat
      901 taagtgctat ggcttatata gaaagcttac attaagattt tataaagttg ctaaaagcaa
      961 ctttattttt atttagcttc ctatcactcc accatcaagt tttcttatca ttattacact
     1021 cgatcttggt gtttttccat aaggaaaagt actacctttt aaaccttctc ctggatgttg
     1081 tatgcctaca aacattgtag tataatcctc actaaaagca atccctgtta attcacaagc
     1141 aataggccct gttaaaaagc gtctgatttc ccctgttttt ggatttgctg ctagcatgca
     1201 gttatttccc ataccttcgt attcatcttt attagaataa gatccatctg tttgtatcca
     1261 aagtcttcca tctctatcaa atttaagtcc atcaggagaa ttgaatttat tttcacttgt
     1321 aatattattt gagcctttat ataagccttg ttggttatca ggatttccag caagagcaaa
     1381 aatttcccaa gtaaaatcat cgtctttatg agaatttttt ggcatccatt ttaaaatttg
     1441 tccataaaca tttttagtcc ttggatttgc tgcattaggt tcttggcgat ttttgttgtt
     1501 cgttagtgtt gcaaatacct ctttagaacc actttgttta tggcttgcta tccattcaca
     1561 tctatccata ggagttgcac ctacaatgct tgcagcaaga cgcgtattga tgagtacttg
     1621 agcttgagac ttaaaaccat ttttttcatc taagctgttt ttgccatatt ctaaagctat
     1681 ccattttccc tgtcctttaa aatctcccac cttgccatta aactgtccta catacaaagt
     1741 accttcatct aaaattttac ttgtatcagt accttttttg tatttgcgtt tgctaacaaa
     1801 tttataaata aattcattca tctcatcatc acccatataa actataacag aaccatcttt
     1861 ttctacgata atttctgcat tttcatgttt aaaacgccct aaagaagttc ttttaacagg
     1921 tgtgcttttt gcatcaaaag gattgatttc cactatccaa ccaaaacgat tggcttcatt
     1981 gatattttta gctaaatcaa atctttcatc aaatttttcc catccataaa gactagtttt
     2041 gttaaatccg tagcgtttaa gagagtcatt aaattctaga ttttcgtctg aacttccaaa
     2101 aaaatcgtca aaattttctt cacaggtgat ataagttccc caaggtgttt gtccatttgc
     2161 acaatttgca aaagttccat gaacaaattt ttcatttttt aaaacttctt ttttagctgc
     2221 tccacttact tgcattttag tgtttgcatc gattctgcgg ttatacttag agtctaaaac
     2281 cacagtccaa tcatcaccct ttttttcgat ttctaagata ctcacaccca cactggcttg
     2341 ctcatataaa atatcttctt tgcttaaatt tttaccatga tgattaaaca tgatttcagg
     2401 atttatatat tcattattaa cggctaaaat tcctccgttt tttgaaagtg gaaaaaaact
     2461 cataccatca tcgttatctc caaaaaccaa atgagcattt ttaattgcat tcatatcgat
     2521 gattttattt tcatcataag gttttgcttt actaaaaagt ggatcacccc aagaaattaa
     2581 aacctttgct tcataacctt gcggtactat aactttatct tgtgtgcttg cattaacagc
     2641 tttaaaacct aacaaatcct tatccttaag cacaacagca cttaaatttg aacttgcaaa
     2701 aaaagccacc atagaaccta aagctgaacc ttttaaaaac aatcttcttt ccatttgttt
     2761 ttaccccata ttgaaattta aaacaatgga agtataaaaa tatttggaaa ctttttagaa
     2821 actttgatga aaaatttaaa ttgaaggaaa aatttatacc tagtttttta ctaggtat
//
LOCUS       DBBXPZ010000127         2859 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.129, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000127 DBBXPZ010000000
VERSION     DBBXPZ010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2859)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2859)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2859
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.129"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..856
                     /locus_tag="ACJFD7_001712"
     CDS             <1..856
                     /locus_tag="ACJFD7_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860480.1"
                     /translation="TLGIQWNDKFSIGANQNQSIDLIGIELQNRLNSLGLGGYHNSNS
                     ILNFTIKHFQNKNICFIPEKKYYLEYYNFFKCHNEWVRKEFFPHKERLFPKKDMSTYK
                     ENYELREMKPEYWDKIAEFIADIIKIKNENILSLNQTLEIKNQELSNQTNQIHNLNTS
                     LENKENLLNFQNNYGKAKTRIQNQLSYKLGQALILNSKSVLGFLSLPFIILSIVISHK
                     QEQKAYKFKIKKNPNLALPPLETYPDYNEALKEKECFTYKLGEEFIKASKNWYGGGVY
                     QIYTQRCA"
     gene            complement(912..2030)
                     /gene="truD"
                     /locus_tag="ACJFD7_001713"
     CDS             complement(912..2030)
                     /gene="truD"
                     /locus_tag="ACJFD7_001713"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HGG0860481.1"
                     /translation="MNLEEENTIFKPLYSLKHSPINAYFSKNSDDFVVRERPLYEFSG
                     KGEHLILHINKKDLTTNEALKILSETSGVKIRDFSYAGLKDKQGSTFQYLSMPKKFES
                     FLSNFSHPKLKILETFIHENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALMNLDKQG
                     FTNYFGYQRFGKFGNNYKEGLEILRGKKMKNVKMKEFLISAFQSELFNRYLSKRVELS
                     HFANDFSEKELIQIYKISKEEAKELKKQEQFFKLLKGEVLGHYPFGKCFLCEDLSAEL
                     RRFKARDISAMGLLIGAKAYETGEGLALNLENEIFKDTLEFKAKMQGSRRFMWGYLEE
                     LKWRYDEEKAHFCIEFFLQKGSYATVVLEEILHKNLFE"
     gene            complement(1999..2820)
                     /locus_tag="ACJFD7_001714"
     CDS             complement(1999..2820)
                     /locus_tag="ACJFD7_001714"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HGG0860482.1"
                     /translation="MNKEDFIIKAFLNEKNGDDGAIIDDWCFSKDLFFENVHFKREWF
                     SLEQIATKAMLVNISDAISMNAVPKYALLGLALPKNLSENEIKALQKGFLKTARKFNI
                     KIIGGDTISNDKIDISLTIISKINDKAVFRKGLKKGHLLAYTGKLGRSLKGLEILQNG
                     GTLKPNHVFIKPKLRASFFYEIAPLISCAMDISDGLSKDLSRLLALNKCGISWFKKLD
                     DYTLYSGEEYEILFAFDEKERQNIKTIAKKHGVKLNIFGKAVKGKYEFRGREHHF"
BASE COUNT         1034 a          482 c          337 g         1006 t
ORIGIN      
        1 tactttgggt attcaatgga atgataaatt ttctattgga gctaatcaaa atcaaagcat
       61 tgatctaata ggcattgaat tgcaaaatcg cttaaatagt ttaggtttag gaggttatca
      121 taattccaat agcatactca attttaccat aaaacatttc cagaataaaa atatatgctt
      181 tattccggaa aaaaaatact acctagaata ttataatttt ttcaaatgcc ataatgaatg
      241 ggttagaaaa gaattttttc cacataaaga aagattattt cccaaaaaag atatgagcac
      301 ttataaagaa aactatgagc ttagagaaat gaaaccagaa tattgggata aaatagctga
      361 atttatagca gatattatca aaataaaaaa cgaaaatatt cttagtctta atcaaacttt
      421 agaaattaaa aatcaagaac tcagtaatca aactaatcaa attcataatt taaatacatc
      481 cttagaaaat aaagaaaacc tactaaattt ccaaaataac tacggaaaag ccaaaacaag
      541 aattcaaaat caactttctt ataaactagg acaagctttg attttaaatt ctaaaagtgt
      601 attaggtttt ttatctttac cttttataat attaagcatt gttatttcac ataaacaaga
      661 acaaaaggct tataaattta aaataaagaa aaatccaaat ttggctttac cacctttaga
      721 aacttatcct gattataatg aagctttaaa agaaaaagaa tgttttactt ataaattagg
      781 agaagaattt attaaggcta gtaagaattg gtatgggggg ggggtatatc aaatttatac
      841 tcaaagatgc gcctaggttg aagagagagt acgagagaaa aagataaaat atatattaga
      901 tatatttaca ctcactcaaa caaattttta tgcaaaattt cttctaaaac cacagtagca
      961 taagagcctt tttgtaagaa aaactctata caaaaatgag ctttttcttc atcataacgc
     1021 cattttaact cttctaaata tccccacata aagcgtcttg aaccttgcat tttagcctta
     1081 aactccaaag tatctttaaa aatttcattt tctaaattta aggccaaacc ttctcctgtt
     1141 tcataagcct tagcaccgat taaaagcccc atggcgctta tatctcttgc cttaaaacgc
     1201 ctaagctcag cacttaaatc ctcgcataaa aaacactttc caaaaggata atgccctaaa
     1261 acctcacctt ttaaaagctt aaaaaattgt tcttgttttt taagttcctt agcttcttct
     1321 ttagaaattt tataaatttg gatcaattct ttttcgctaa aatcatttgc aaaatgtgat
     1381 aactccactc ttttactcaa atagcgatta aaaagctcac tttgaaaagc tgaaattaaa
     1441 aactctttca tttttacatt tttcattttt ttgccacgca aaatttcaag cccttcttta
     1501 taattattcc caaattttcc aaaacgctga taaccaaaat aattcgtaaa accttgctta
     1561 tccaaattca tcaaagcttg ttctagtttt aaagcatcgc ttggcaaaac tttttttaag
     1621 cgtatgaaaa aagaatttcc ttttaaatgc cctattctta gcttgttttc atggataaaa
     1681 gtttctaaaa ttttaagttt aggatgagaa aaatttgaca aaaaactctc aaatttttta
     1741 ggcatagaaa ggtattgaaa ggttgatcct tgcttatctt taagccctgc ataactaaaa
     1801 tctcttattt taaccccgct tgtttcgctt aaaattttta aagcttcatt tgtggttaaa
     1861 tcttttttat tgatatgcaa aataagatgt tcacccttac cgctaaattc atacaaaggc
     1921 ctttcacgca ctacaaaatc atcgctattt ttactaaaat acgcattaat aggactgtgt
     1981 tttaaactat acaaaggctt aaaaatggtg ttctcttcct ctaaattcat attttccttt
     2041 cactgctttt ccaaagatat ttaatttcac gccgtgtttt ttggctattg tttttatatt
     2101 ttgacgctct ttttcatcaa aagcaaacaa aatttcatat tcttctccgc tataaagcgt
     2161 ataatcatca agttttttaa accaagaaat accacattta tttaaggcta aaagtcttga
     2221 taaatccttg cttaaaccat ctgaaatatc catagcacaa gaaattaaag gtgcgatttc
     2281 ataaaaaaaa ctagctctta attttggctt tataaataca tggtttggtt ttaaagtgcc
     2341 cccattttgt aaaatttcaa gcccttttaa acttcgtcct aattttcccg tataagcaag
     2401 taaatgcccc ttttttaaac cttttctaaa aacagcttta tcgttaatct ttgaaatgat
     2461 agtaagacta atgtctattt tatcattgct tatagtatca ccgcctatga tttttatatt
     2521 aaatttccta gctgttttta aaaaaccttt ttgcaaggct ttgatctcat tttcgcttaa
     2581 attttttggt aaagcaagtc ctaaaagtgc gtattttggt acagcattca ttgaaatagc
     2641 atctgagata ttaacaagca ttgcttttgt agcaatttgc tctaagctaa accactctct
     2701 tttaaaatgc acattttcaa aaaacaaatc cttactaaaa caccaatcat caataatagc
     2761 tccatcatcg ccattttttt catttaaaaa agctttgata ataaaatctt ctttgttcat
     2821 aatgcgtgat tttataaaat ttccttttaa attctagtg
//
LOCUS       DBBXPZ010000128         2837 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.130, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000128 DBBXPZ010000000
VERSION     DBBXPZ010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2837)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2837)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2837
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.130"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            77..1522
                     /locus_tag="ACJFD7_001715"
     CDS             77..1522
                     /locus_tag="ACJFD7_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase subunit A"
                     /protein_id="HGG0860483.1"
                     /translation="MNQIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHV
                     KIADEAYRIGTDAIRGYLDVARIVEIAKACGADAIHPGYGFLSENYEFAKACEDAGII
                     FIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILK
                     ASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGD
                     NYGNIIHLCERDCSIQRRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTI
                     EFLLDDYNRFYFMEMNTRIQVEHPITEEITGIDLIVRQIRIAAGEILDLEQSDIKPRG
                     FAIEARITAENVWKNFIPSPGKIGEYYPALGPSVRVDSHIYKDYTVPPYYDSMLAKLI
                     IKATSYDLAVNKLERALKEFVIDDIRTTIPFLIAITKTREFRRGYLDTSFIETHMQEL
                     LEKTEDRHQENKEEVIVAIAATLKKIRESRE"
     gene            1526..1777
                     /locus_tag="ACJFD7_001716"
     CDS             1526..1777
                     /locus_tag="ACJFD7_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860484.1"
                     /translation="MDFLESLKSIKKEMQANANTPKLAKKSSKSGASVKNLEKLAKDI
                     REKNQETNIDKEMQEIFLKQEKLQDEFSEFIKNADIKKI"
     gene            1777..2496
                     /locus_tag="ACJFD7_001717"
     CDS             1777..2496
                     /locus_tag="ACJFD7_001717"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HGG0860485.1"
                     /translation="MLEIGFCTLEDQCPYLKDKRSRIEYKYIENCPKEINNELIKRGW
                     RRFGRYFSRPICKDCDECLSLRILVNEYNFSRSERRVVNKNINTKVILRTPNLSNEHL
                     FLYDKYHRFMEEKKNWKRYDLSFKQYYNLYVDGFMNFGYELAFYIEDKLVCVDLIDIL
                     EDGISSIYCFYDPDFSYFSLGKFSLLNEIQIAKKMNLDYIYLGYFVKKCQSLSYKADY
                     TPNEILKGTKELFENEVLWEK"
     gene            2497..>2837
                     /locus_tag="ACJFD7_001718"
     CDS             2497..>2837
                     /locus_tag="ACJFD7_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HGG0860486.1"
                     /translation="MQIVQTLETINVNTDDISVFQYFKDLITKNFTKVIGRKNKIFSF
                     FEENEIPQRRYFLKVLDQKYRKSTNEGIENLQDAHFKTFRLIFEQNNMLKPMLFIRID
                     FVAGRILMKLSS"
BASE COUNT         1050 a          337 c          530 g          920 t
ORIGIN      
        1 attaaatttt ttgctaagtt tttgtaagga aaatttgcta aaattaacaa taaaaatata
       61 acaaaaaagg caaattatga atcaaatcca taaaattctc atagcaaata gagctgaaat
      121 agctgttaga gtaatccgtg cttgtagaga tttacatatt aaaagtgttg cagtttttac
      181 agagcctgat cgtgaatgtt tgcatgtaaa aatcgcagat gaggcttatc gcataggaac
      241 ggatgctata agaggatatt tagatgttgc tcgtattgtc gagattgcta aggcttgtgg
      301 tgctgatgcg atccatcctg gttatggatt tttaagtgag aattacgaat ttgctaaggc
      361 ttgtgaagat gctggaatta tttttatagg tccaaaatct gaagtaatcc ataagatggg
      421 aaataaaaat atcgctcgta agttaatggc taaaaatggc atacctattg ttccagggac
      481 tgaaaaatta aattcctata gcatggaaga aattaaaatt tttgctgaga agattggtta
      541 tcctgttatt ttaaaagctt caggtggtgg aggtggacgc ggaattcgcg ttgttcataa
      601 agaacaagat cttgaaaatg cctttgaatc ttgcaaaaga gaagctttaa catactttaa
      661 taatgatgaa gtatttatgg aaaaatatgt agttaatccc agacatatag aatttcaaat
      721 tttaggagat aactacggaa atattatcca tctttgtgaa agggattgtt ctattcaaag
      781 aagacatcaa aaggtaattg agatagcacc ttgccctgga atttcagata atcttagaaa
      841 aaccatgggt gttacagctg tggcagctgc taaggctgta ggttatacaa atgctggaac
      901 tatagagttt ttgcttgatg attataatcg cttttatttt atggaaatga atacaagaat
      961 tcaagttgag catccaatta ctgaagaaat tacaggtatt gatcttattg taagacaaat
     1021 tcgtattgca gcaggagaaa ttttggactt agaacaaagc gatattaaac ctaggggttt
     1081 tgctattgaa gctagaatta ctgctgaaaa tgtatggaaa aattttattc caagtcctgg
     1141 aaaaatagga gaatactacc cagctcttgg accatctgtt agggttgata gtcatattta
     1201 taaagactat actgtgccgc cttattatga ttccatgctt gcaaagctta ttattaaagc
     1261 aacaagttat gatttagcgg ttaataaact tgagcgtgct ttgaaggaat ttgtgattga
     1321 tgatattaga acaacaatac catttttaat tgccattaca aaaacaagag aatttagaag
     1381 ggggtattta gacacctctt tcatagaaac acatatgcaa gaattattag aaaaaacaga
     1441 agatcgtcat caagaaaata aagaagaagt tatagttgca atagctgcta cgcttaaaaa
     1501 aatacgagaa agtagagaat aatagatgga ttttttagag agtcttaaaa gtattaaaaa
     1561 agaaatgcaa gctaacgcca atactccaaa attagcgaag aagtcaagca agagtggtgc
     1621 aagtgtaaaa aatttagaaa aactagctaa agatattcgc gaaaaaaatc aagaaacaaa
     1681 catagataag gaaatgcaag aaattttctt aaagcaagaa aaactacagg atgaattttc
     1741 cgaatttatc aaaaatgcag atattaagaa aatttaatgc ttgagattgg tttttgtact
     1801 cttgaagatc agtgtcctta cttaaaggat aaacgttcaa gaatagagta taaatacatt
     1861 gaaaattgcc ctaaagaaat caataatgag ctaataaaac gaggttggcg tcgttttggt
     1921 aggtattttt cacgccctat ttgtaaagat tgtgatgaat gtttaagtct tagaatttta
     1981 gttaatgaat ataatttttc aagaagtgaa agaagggttg taaataaaaa tattaacacc
     2041 aaagttatac ttagaacacc caatttaagc aatgaacatt tgtttttata tgataaatac
     2101 catcgtttta tggaagaaaa aaagaactgg aagcgttatg atttaagctt taaacagtat
     2161 tataatcttt atgtcgatgg ttttatgaat tttggatatg agcttgcatt ttatatagaa
     2221 gataagctcg tttgtgttga tttgattgat attttagagg atggaatttc aagcatttat
     2281 tgtttttatg atcctgattt ttcgtatttt tctttgggta aattttcttt gctcaatgaa
     2341 atacaaatag ctaaaaaaat gaacttagat tatatttatc ttgggtattt tgtaaaaaag
     2401 tgtcaatctt tatcttataa agccgattat acacctaatg aaattttaaa aggcactaaa
     2461 gagctttttg aaaatgaggt tttatgggag aaatagatgc aaatcgtgca aactttagaa
     2521 actatcaatg ttaatacaga tgatattagc gtatttcagt attttaaaga cttgattacc
     2581 aaaaatttca caaaggtcat aggacgaaaa aataaaattt tttctttttt tgaagaaaat
     2641 gaaattccac agcgccgtta tttcttaaaa gttttagatc aaaaatatcg taaaagcaca
     2701 aatgaaggta tagagaattt acaagatgct cattttaaaa cttttagatt aatttttgag
     2761 caaaataata tgcttaagcc tatgttgttt atcaggattg attttgttgc gggtagaatt
     2821 ttgatgaagt taagctc
//
LOCUS       DBBXPZ010000129         2823 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.131, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000129 DBBXPZ010000000
VERSION     DBBXPZ010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2823)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2823)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2823
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.131"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            110..>2823
                     /locus_tag="ACJFD7_001719"
     CDS             110..>2823
                     /locus_tag="ACJFD7_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002886483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HGG0860487.1"
                     /translation="MAKAKQNIKKHLLLNQFIHDKSLVQKLNESYDFGNFSQAINLQF
                     YQQEGVKNALAILSFYMKDELNSHNYNQERRKLLDFYQGENKDLKLQKEHIARASFWM
                     ATGSGKTIVMIKLIALIHEFIKNNQLPKKPIMLLAPNDKILNQFKANITKYNNYHSNF
                     IKIKDLKDFESIEKEASLLNEAVVYFARSDLLESEENVGKDKKAKRLNYKNYLNKDGW
                     YILLDEAHRGDSKTSLRKNYYHELARGFIKEDEFPKGFVFNFSATFEDEIDFITCAYN
                     YNLQKFNQEGYGKNIAILNENLDFKSENNEEVKIKTILEGFIIFNAIVKTKEELFLKR
                     QDFTYHNPLIIAVSDKVNTQDAGIKTYFKAVHNVLKNKADIGNIALELYEKLQNQNLH
                     FGINTLSDDFLKYIKNTNNDELRKNIFYASANANLECYSIKGNDKELAFKSKNSNKPF
                     MLLNISNAKEWEKNFLLELGVESISDISQSHFENINSLESSINIMLGSKVFSEGWDSN
                     RVNLISFINIGSVNAKKYVLQTIGRGVRIEPFLNIRKRLNTLKETFKIDERCVNLACG
                     LETLFVMASDNEAIQAIIEGIEYEFIESKHLKGFKETKLSFNLPIPKYKNETKLKSIY
                     KISKDDAKSLEELIKSYDEDVLILGQCLYKNFKYSTLQEFNKFIKGKESRIQLSGNKV
                     EFNEKTILKTINSVLNSNTKVLDKFVKLEKEITHHKNIQAKLDFETVQKINKTIKDVL
                     NAKSEDELKADFENKKINLDELMQGIKENQKSKEVKNYIISAKLSKHYYNPLIIYNKN
                     DKESKINFAISNESEKEFLEDLEKNLNLSFFEQYEWYFSKLVENQDEIYIPYFDEEQQ
                     KERKFYPDFIFWLKNKQSGEFDIYFIDPKGLKIEDNPRFKLKGFKMIF"
BASE COUNT         1251 a          305 c          412 g          855 t
ORIGIN      
        1 atcattcttt acaccacttg caagataagc tgttgcaaga attttcagta tgtaaaaatt
       61 cttacatact gcaaatgata aaaacaatta aagctttaaa ggaaaaataa tggctaaagc
      121 aaaacaaaat ataaaaaaac atttattgtt aaatcaattt atccatgata aatcactagt
      181 gcaaaagctt aatgaaagtt atgattttgg caatttttct caagctataa atttgcaatt
      241 ttatcagcaa gaaggtgtta aaaatgcttt agccatactc tctttttata tgaaagatga
      301 gttaaattcg cataattaca atcaagaacg cagaaaactt ttagattttt atcaaggtga
      361 aaacaaggat ttaaaactac aaaaagaaca tatcgcaaga gcttcatttt ggatggctac
      421 aggaagtggt aaaactatag ttatgattaa acttatagct ttgatacatg aatttattaa
      481 aaataatcaa ttacctaaaa aacccatcat gcttttagca ccaaatgata agattttaaa
      541 tcaattcaaa gcaaatataa ctaaatacaa taattatcac agcaatttta tcaaaataaa
      601 agatttaaaa gattttgaaa gcatagaaaa agaagctagt ttattaaatg aagcggtggt
      661 gtattttgca agaagtgatt tgctcgaaag cgaagaaaat gtaggcaagg ataaaaaagc
      721 aaaaagatta aactataaaa attatcttaa taaagatggt tggtatatat tgttagatga
      781 agctcataga ggagatagta aaacatcact aagaaaaaat tattatcatg aacttgctag
      841 aggttttatc aaagaagatg aatttccaaa aggctttgtt tttaattttt ctgctacttt
      901 tgaagatgag atagacttta taacttgtgc ttataattat aatcttcaaa aattcaatca
      961 agaaggatat ggtaaaaata tagcgatttt aaatgagaat ttagatttta aaagcgaaaa
     1021 taacgaagag gtaaaaatta aaacgatttt agaaggtttt ataatcttta atgctattgt
     1081 aaaaacaaaa gaagaattgt ttttaaaaag acaagatttt acatatcata atcctttaat
     1141 catagcagtt tctgataaag taaatactca agatgcaggt ataaaaacat actttaaagc
     1201 agtgcataat gtattaaaaa ataaagcaga tataggcaac atagccttag aactttatga
     1261 aaaacttcaa aatcaaaatt tacattttgg tataaataca ctaagtgatg attttttaaa
     1321 atacataaaa aatacaaata atgatgaact gagaaaaaat attttttatg cgagtgcaaa
     1381 tgcaaattta gagtgctata gcattaaagg aaatgacaaa gaattagctt ttaagagcaa
     1441 aaattcaaac aaacccttta tgcttttaaa tatttcaaac gcaaaagaat gggaaaaaaa
     1501 ctttttactt gaacttggag tagaaagtat aagcgatata tcgcaaagtc attttgaaaa
     1561 catcaatagc ctagaatcct ctatcaatat aatgttagga agcaaagttt tttcagaagg
     1621 ttgggatagc aatcgtgtaa atttaatttc ttttatcaat ataggcagtg ttaatgctaa
     1681 aaaatatgtt ttacaaacca taggaagagg tgtcagaata gaacctttct taaatataag
     1741 aaaaagacta aacaccttaa aagaaacatt taaaattgat gagcgatgtg taaatttagc
     1801 atgtggctta gaaactcttt ttgtaatggc aagtgacaat gaagccattc aagctatcat
     1861 agaaggtata gaatacgaat ttatagaaag caaacattta aaaggattta aagaaacaaa
     1921 attgtcgttt aatttgccta taccaaagta taaaaatgag acaaaactaa aaagtattta
     1981 taaaatttca aaagatgacg caaaatcttt agaagaattg ataaaatctt atgatgagga
     2041 tgttttaatt ttagggcagt gtttgtataa aaattttaaa tattctacat tgcaagaatt
     2101 caacaaattt ataaaaggaa aagaaagtag aatacaatta tcaggaaata aggtagaatt
     2161 taatgaaaaa acaatattaa aaacaatcaa tagtgtgtta aattctaata ctaaagtttt
     2221 ggataaattt gtaaagctag agaaagaaat aacacaccat aaaaatatac aagcaaagtt
     2281 agattttgaa acagttcaaa aaattaacaa aactataaaa gatgttttaa atgcaaaaag
     2341 cgaagatgaa ttaaaagcag actttgaaaa taaaaaaatc aatttagatg agctaatgca
     2401 aggcataaaa gaaaatcaaa aaagtaaaga agtaaaaaac tatataatta gtgcaaagct
     2461 tagcaagcat tactacaacc ctttaatcat ttacaataaa aacgataaag aaagtaaaat
     2521 taactttgct atttccaatg aaagtgaaaa agaattttta gaagatctag aaaagaattt
     2581 aaatttatct ttttttgaac aatacgaatg gtatttttct aaattggtag aaaatcaaga
     2641 tgaaatttat attccttatt ttgatgaaga acagcaaaaa gaaagaaaat tttaccctga
     2701 ttttatattt tggctaaaga ataaacaaag cggagaattt gatatatatt ttatagatcc
     2761 aaaaggttta aaaatagaag ataatcctag atttaaacta aaaggcttta aaatgatatt
     2821 cga
//
LOCUS       DBBXPZ010000130         2652 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.132, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000130 DBBXPZ010000000
VERSION     DBBXPZ010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2652)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2652)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2652
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.132"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            27..1451
                     /gene="katA"
                     /locus_tag="ACJFD7_001720"
     CDS             27..1451
                     /gene="katA"
                     /locus_tag="ACJFD7_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HGG0860488.1"
                     /translation="MKKLTNDFGNIIADNQNSLSAGAKGPLLMQDYLLLEKLAHQNRE
                     RIPERTVHAKGSGAYGEIKITADLSAYTKAKIFQKGEITPLFLRFSTVAGEAGAADAE
                     RDVRGFAIKFYTKEGNWDLVGNNTPTFFIRDAYKFPDFIHTQKRDPRTHLRSNNAAWD
                     FWSLCPESLHQVTILMSDRGIPASYRHMHGFGSHTYSFINDKNERFWVKFHFKTQQGI
                     KNLTNQEAAELIAKDRESHQRDLYNAIENKDFPKWKVQVQILAEKDIEKLGFNPFDLT
                     KIWPHSLVPLMDIGEMILNKNPQNYFNEVEQAAFSPSNIVPGIGFSPDKMLQARIFSY
                     PDAQRYRIGTNYHLLPVNRAKSEVNTYNVAGAMNFDSYKNDAAYYEPNSYDNSPKEDK
                     SYLEPDLVLEGVAQRYAPLDNDFYTQPRALFNLMNDDQKTQLFHNIAASMEGVDEKII
                     TRALEHFEKISPDYAKGIKKALEK"
     gene            1508..1978
                     /locus_tag="ACJFD7_001721"
     CDS             1508..1978
                     /locus_tag="ACJFD7_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj1386 family hemin-binding protein"
                     /protein_id="HGG0860489.1"
                     /translation="MTTLSLEEEKRFEELCKMAFNFARNNECENLKIMIEAGLNVNLK
                     THKGDSLLMLAAYNNSYESAKMLLEKGAKVDEKNDRGQTPLAGVCFKGYLPMCELLVK
                     YGANIDENNGLGMTPYTFAIMFGRKDVAEFLLKKSKNNFLKKISLKILKFIKKF"
     gene            complement(1979..2635)
                     /locus_tag="ACJFD7_001722"
     CDS             complement(1979..2635)
                     /locus_tag="ACJFD7_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0140110 - transcription regulator activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HGG0860490.1"
                     /translation="MDEGQKQQFIKLTYFLGEVLGEQYEIVFHVITEDGAYIAAIANS
                     HISGRSLDSPLTAFASELMQNKKYLEKDFLCDYKALVGKSKLIRGSTFFIKNHDKLVG
                     ILCINHDTSIMRDLICKMIDLEKIGDMGDILGNISFSQNDSSIETLSHSIEDILVQSV
                     DSSYLNSDYQLSITQKEEIAEKLYEKGIFNIKGAVPIVAKFLKISEPSVYRYLKKFKK
                     "
BASE COUNT          984 a          407 c          407 g          854 t
ORIGIN      
        1 aaaatttatt attttaggag aaaacaatga aaaaattgac taacgatttt ggaaacatta
       61 tagccgataa ccaaaattca ttaagcgcgg gtgcaaaagg acctttgctt atgcaagatt
      121 atcttttgct tgaaaaactt gctcatcaaa atagagaaag aattccagaa agaaccgttc
      181 atgccaaggg aagtggggct tatggagaaa taaaaatcac cgctgattta tctgcttata
      241 ctaaggcaaa aatatttcaa aaaggagaaa taactcctct tttcctacgc ttttctactg
      301 ttgcaggtga agcaggtgca gcagatgctg agcgtgatgt acgtggattt gccattaaat
      361 tttacaccaa agaaggaaac tgggatttag taggaaataa tactccaact ttttttatcc
      421 gtgatgcgta taaatttcct gatttcattc atactcaaaa aagagatcca agaactcatc
      481 taagaagtaa taatgctgct tgggattttt ggagtttatg tcctgaaagt ttacatcaag
      541 taaccattct tatgagcgat agaggaattc ctgcaagtta tcgtcatatg catggatttg
      601 gaagccatac ttatagtttt attaatgata aaaatgaaag attttgggtg aaattccatt
      661 ttaaaaccca acaagggatt aaaaatctta ccaaccaaga agctgccgag cttatagcaa
      721 aagatagaga aagtcatcaa agagatctct ataatgctat agaaaataaa gattttccaa
      781 aatggaaagt tcaagttcaa attcttgctg aaaaagatat agaaaaactt ggatttaatc
      841 cttttgattt aacaaaaatt tggcctcata gtcttgtgcc tttgatggat ataggcgaaa
      901 tgattctaaa caaaaatcct caaaattatt ttaatgaagt tgaacaagct gcctttagtc
      961 caagcaatat cgttcctgga attggcttta gccctgataa aatgttgcaa gctagaattt
     1021 tttcatatcc tgatgcacaa agatatagaa taggaactaa ttatcatctt ttgcccgtaa
     1081 atcgtgcaaa aagcgaagtg aatacttaca atgtcgctgg tgctatgaat tttgatagtt
     1141 ataaaaatga tgcagcttat tatgaaccaa acagctatga taatagccca aaagaagaca
     1201 aaagctatct tgaacctgat ttagtcttag aaggcgtagc acaaagatat gctccactag
     1261 ataatgactt ttatactcaa ccaagagctt tatttaatct tatgaatgat gatcaaaaaa
     1321 ctcaactttt tcataatatc gccgcttcta tggagggagt tgatgaaaaa attatcacta
     1381 gagctttaga acattttgaa aaaatttcac ctgattatgc aaaaggaatt aaaaaagctt
     1441 tagaaaaata atttttactt gccacttttg gtggcaaact aaagattata ataattaagg
     1501 aaaaacaatg acaactctta gtttagaaga agaaaaaaga tttgaagagc tttgcaaaat
     1561 ggcttttaat tttgcaagaa ataatgaatg tgaaaatctt aaaatcatga tagaagcagg
     1621 tttaaatgta aatttaaaaa ctcataaagg cgatagcttg cttatgcttg cagcttataa
     1681 taattcttat gaaagcgcta aaatgctttt agaaaaaggt gcaaaagtag atgaaaaaaa
     1741 cgatcgtgga caaaccccat tagcgggagt ttgttttaaa ggatacttac ctatgtgtga
     1801 acttttagtt aaatatggag caaatattga tgaaaacaat ggtttaggaa tgacacctta
     1861 tacttttgct attatgtttg gacgcaaaga tgtggcagaa tttttactca aaaaatctaa
     1921 aaataatttt ttaaagaaaa taagcctaaa aatactaaaa tttatcaaaa aattttagtt
     1981 attttttaaa tttcttcaga tacctataga cactaggttc tgaaattttt aaaaattttg
     2041 ctacgatagg aaccgcccct tttatattaa aaataccttt ttcatatagc ttttcagcaa
     2101 tttcttcttt ttgagtaatg cttaattgat agtcagaatt taaataacta gaatctacgc
     2161 tttgaactaa aatatcctct atcgagtgac ttaatgtttc tatacttgaa tcattttgag
     2221 aaaaactaat atttcctaaa atatcaccca tatctccaat tttttctaaa tcaatcatct
     2281 tgcatattaa atctctcata atgctagtat catgattgat acacaaaata cctactaatt
     2341 tgtcatgatt tttaataaaa aaagtagatc ctctaattaa ttttgatttt ccaacaagag
     2401 ccttataatc acataaaaaa tctttttcta aatatttttt attttgcata agctcacttg
     2461 caaaagcagt caagggagaa tctaaacttc ttccactaat gtgactgtta gcaattgctg
     2521 caatataggc cccatcttca gtaattacat gaaaaactat ctcatattgc tcacctaaaa
     2581 cttctcctaa aaaatatgtc aactttataa attgttgttt ttgtccctca tccataaaac
     2641 taccttcaat aa
//
LOCUS       DBBXPZ010000131         2536 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.133, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000131 DBBXPZ010000000
VERSION     DBBXPZ010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2536)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2536)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2536
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.133"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..757
                     /locus_tag="ACJFD7_001723"
     CDS             <1..757
                     /locus_tag="ACJFD7_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860491.1"
                     /translation="YCFILFLSLVLSSNLLANNFSQKKVIKIEKSADSFEVIDLNQNV
                     ANPNLNQQKALFDSSTLIEKKSQITKDKDIDFAIVLTSRKNFGYFLDGFRVSDKEFST
                     LFAKNLIQSLKLNWVNSAANGIYQSPKTLSYFSPKDAKLINVSPFLTQEKDKAKMYAK
                     FTDYVVVVNLQDFYVNITNYFITTSKEGVANVNFKIISTSNGKILVAKNAKLNLTLKN
                     QDAKQNYQDIINQMPKMLADVIKNQIFHLKLLN"
     gene            complement(761..2515)
                     /locus_tag="ACJFD7_001724"
     CDS             complement(761..2515)
                     /locus_tag="ACJFD7_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860492.1"
                     /translation="MFDKIHYYYFNANYEKCLNLSEQFLKESPKFALEFATLSSYKLS
                     LFQKALYYAQELFSLNPTSFNGLMLAKSYIENLRLDEALNLLQTLLTRKDDLEDELKL
                     ELAFIYKLSNKLEESEQIFKELLSKDMYNLNLWKNYAEIYFKHDFTKALNAHEHLCHF
                     MQDLIDKLQKGIIAEQTNLNLVKLEDRLHSKTKENLTISKIKDFLTHQILPQKAYLLF
                     KLFRISDSLELFQSLQEANQHHAQFWQNYAKVLEFNSNYQEAYHAYKKCLSLDSHATY
                     QFDLAYLLMRMGVDDNFEEGKKYYESRLFYAHNETFSTYHYNESLKAFNKFGVDAFKN
                     KEVLVFCEQGFGDTIMYARCLEKLCKIASKVLFAPQSAMYEMFKNQIKFLNQNDDIFK
                     NVKVLKNLPTNFDYAIPICSLPFFIDIKLDEILRLKTPILPQKKPHNQRKKLGIFYAT
                     PNAENSDLLRNVKFEFLFDVLKDLDYEIISFQMQLKEELPKVIEDRSKLIKNWNDTLN
                     YLYDIDCMLSIDSAIAHLSLAMDIPTIVLLHPRFDWRWGKFENPKSYFWPKAKCFIIK
                     EQEETKRNLQKLIKDILN"
BASE COUNT          933 a          341 c          335 g          927 t
ORIGIN      
        1 gtattgtttc attttgtttt taagtttagt tttaagttct aatcttttag cgaataattt
       61 ttctcagaaa aaagttatta aaattgaaaa aagcgcagat agttttgaag taatagatct
      121 aaatcaaaat gttgcaaatc caaatctaaa tcaacaaaaa gcattgtttg atagttctac
      181 cttgattgaa aaaaaatcgc aaatcaccaa agataaagat attgattttg ccattgtatt
      241 aacttctagg aaaaattttg gttatttttt agatggtttt agggtgagtg ataaggaatt
      301 ttctacatta tttgctaaaa atttgattca aagtttaaag cttaattggg ttaattctgc
      361 tgcaaatggt atttatcaaa gtcctaaaac tttgtcatat tttagcccta aggatgcaaa
      421 acttataaat gtaagtcctt ttttaacaca agaaaaagat aaggctaaaa tgtatgccaa
      481 atttacagat tatgttgtgg tggtaaattt gcaagatttt tatgtaaata ttacaaatta
      541 ttttatcaca actagtaaag agggtgtggc taatgttaat tttaaaatca tttctacaag
      601 caatggaaaa attcttgtag caaaaaatgc aaaattaaat ttgacattaa aaaatcaaga
      661 tgcaaagcaa aattatcaag atattataaa ccaaatgcca aaaatgctag ctgatgttat
      721 caaaaaccaa attttccacc taaagctctt aaactaagct ttagtttaaa atatctttaa
      781 tcagtttttg caaatttctt tttgtttctt cttgttcttt tatgataaaa cattttgctt
      841 ttggccaaaa ataactttta ggattttcaa attttcccca acgccaatca aacctaggat
      901 gtaaaagaac tatagtagga atatccatag ctaaacttaa atgcgctata gcactatcaa
      961 tactaagcat acagtcaata tcatataaat aatttagagt atcattccaa ttttttataa
     1021 gcttgcttct atcttctatt accttaggca attcttcttt taattgcatt tgaaaagaaa
     1081 tgatctcata atctaagtct tttaatacat caaataaaaa ttcaaatttt acatttctta
     1141 ataaatcaga attttcagca ttaggagtag cataaaaaat accaagtttt tttctttgat
     1201 tatgcggttt tttctgtggc aatataggtg tttttaatcg taaaatctca tcaagcttaa
     1261 tatcaataaa aaaaggcaaa gaacaaatag gaatagcata atcaaaattt gtaggtagat
     1321 tttttaaaac ctttacattt ttaaaaatat catcattttg atttaaaaat ttgatttgat
     1381 ttttaaacat ttcatacatg gcactttgag gagcaaataa aacctttgaa gcgattttgc
     1441 aaagtttttc taagcatctt gcatacatta tagtatcgcc aaagccttgc tcgcaaaata
     1501 ctaaaacttc tttattttta aaagcatcaa cgccaaattt attaaaagct tttaggcttt
     1561 cattataatg ataagtagaa aaagtttcat tatgagcata aaataatctg ctttcataat
     1621 atttcttgcc ctcttcaaaa ttatcatcca ctcccatacg catcaaaaga taagccaaat
     1681 caaattgata ggttgcatga gaatccaagc taagacattt tttataagca tgataagctt
     1741 cttgatagtt tgagttaaat tctaatacct tagcatagtt ttgccaaaac tgtgcatggt
     1801 gttgattggc ttcttgtagt gattgaaaaa gttctaaaga atcagatatt ctaaaaagct
     1861 taaaaagcaa gtatgctttt tggggtaaaa tttgatgagt taaaaaatct tttattttag
     1921 aaatggtaag attttctttg gttttactat gaagcctatc ttcgagtttg actaaattaa
     1981 gattggtttg ttcagcaatg attccttttt gtagtttatc aatcaaatct tgcataaaat
     2041 gacacaagtg ctcatgtgca tttaatgcct tagtaaaatc atgtttaaaa taaatttctg
     2101 cataattttt ccatagatta agattataca tatctttaga aagcaattct ttgaaaattt
     2161 gttcagattc ttctagttta ttactcagtt tataaataaa agccaattct aacttaagtt
     2221 catcctctaa atcatctttg cgagttaaaa gtgtttgtaa taaattcaag gcttcatcaa
     2281 gtcttaaatt ttcaatatag cttttagcaa gcataagacc attaaaactt gtaggattta
     2341 aagaaaaaag ctcttgagca taatataaag ctttttgaaa aagagaaagt ttataagaag
     2401 aaagcgtagc aaattctaaa gcaaattttg gactttcttt taaaaattgc tcactcaagt
     2461 tcaaacattt ttcataatta gcattaaaat aataataatg aattttatca aacatatttt
     2521 tccttgatgg ttacat
//
LOCUS       DBBXPZ010000132         2309 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.134, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000132 DBBXPZ010000000
VERSION     DBBXPZ010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2309
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.134"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            78..395
                     /locus_tag="ACJFD7_001725"
     CDS             78..395
                     /locus_tag="ACJFD7_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860493.1"
                     /translation="MIGKDFLYSIHKDKKSIYLFCENKSIIDCQSIYDELYKLEATTD
                     FTFEELQNYQAYIFLNSTLLTGSNELPNNPFYFGELDQDNTIKQDTPSYYFSPSNEFK
                     CKS"
     gene            541..2073
                     /locus_tag="ACJFD7_001726"
     CDS             541..2073
                     /locus_tag="ACJFD7_001726"
                     /inference="COORDINATES: protein motif:HMM:NF039427.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6402 family protein"
                     /protein_id="HGG0860494.1"
                     /translation="MDEELFWENIVPVGHINEETLKSQIYINNINFSTLQYDETVLPT
                     ELECCYNEFKYYQKSNNEIATLGWAISYQLQVLWQNSPKIDTIQNYHLPVKQNKPNNP
                     QAEQRLKEIQNFLQSKGIEPLILHYTPYPNNTQTQEMKRLRQNSERFSRHVDNKTNEV
                     REERRSIKFYTTLDWDKFYSHFPIIKRLSKKFHTKEDIYTQNFTKQIEIILQKTHNIL
                     ILKNLPQGEYKFDFAIDIKENRSDKNEESYFIIKENDEISKDYKRILDCKPYELDTLN
                     CQYIGVGDDEFFRQIWQNLGINIAEKFKVDFSYARLDKFIFATSPFGLTYNTYETLVQ
                     TYDELMQDLSLYACSGKFSFNFVPSKLSIKKEIQGDREKVSYRVDEMLVYVYDSFDFL
                     DQGHEFDDEGNFIKLGQPVGAWDFNEKSFSIWGSTRQMGTYDKNKIIKTVVEIVDKKI
                     TFEDILRSPKTKQYYLYNQDYQDYQKFTPYGLDFRLYSKDFITKLDFKDKAYNVLYNT
                     GV"
     gene            2074..>2309
                     /locus_tag="ACJFD7_001727"
     CDS             2074..>2309
                     /locus_tag="ACJFD7_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860495.1"
                     /translation="MGDSITLSIFVGSLLSIAVITKFYLIALSVLIAFSIINYWIKIN
                     IKEFVKSYFLVYFIIFFTAIIIIFYLSYDIETSRG"
BASE COUNT          904 a          290 c          335 g          780 t
ORIGIN      
        1 tttaggtgga gtttgtaaaa tatcacaagc tttgtatttt aatggaaaag ctaaaatagg
       61 tattatttag gaaaattatg ataggtaaag actttttata ttctattcat aaagataaaa
      121 aaagtattta tttgttttgt gaaaataaaa gcataattga ttgtcaaagt atttatgatg
      181 aactttataa attagaagca acgacagatt ttacttttga agaacttcaa aactatcaag
      241 cttatatctt cctaaactcc accctcctta caggatcaaa tgaacttcct aacaatcctt
      301 tttactttgg agaattagat caagataata ctataaaaca agatacacct agttattatt
      361 tttctcctag taatgaattc aaatgcaaat cataaaggat aaaataatat atgaaaacaa
      421 gccaaatata tgaaacttta taaatatgct agaatgtgct ggactaggta ttctataaat
      481 tttaaatgag aacatgctta aggaatttct aaaaaaatat aaaaacaata ggatgaaata
      541 atggatgaag aacttttttg ggaaaacatt gttccagtag gacatattaa tgaagaaact
      601 ttaaagagcc aaatttatat taataatata aattttagca ctttacaata tgatgaaaca
      661 gtgttaccta cagaattaga gtgttgttat aatgaattta aatactatca aaaaagcaat
      721 aatgaaatag caacactagg ttgggctatt agctatcaac ttcaagtatt gtggcaaaat
      781 agccctaaga tagatacaat acaaaattat catctccccg taaaacaaaa taagcctaat
      841 aatccccaag cagaacaaag actaaaagaa atacaaaatt tcttacaaag taaaggtata
      901 gaacctctta ttttacatta taccccttat ccaaacaaca cacaaaccca agagatgaaa
      961 agactaaggc aaaattcaga gcgtttttcg cgccatgtag ataataaaac aaatgaagta
     1021 agagaagaaa ggcgttctat taaattttac actacgctag attgggataa gttttattct
     1081 cattttccta taataaaaag actaagtaaa aaatttcata caaaagaaga catatacact
     1141 caaaatttta caaagcaaat agaaataatc ttacaaaaaa ctcataatat tttgatatta
     1201 aaaaatttac ctcaaggaga atataaattt gattttgcga tcgatataaa agaaaatcga
     1261 agcgataaaa atgaagaatc ttatttcatc attaaagaaa atgatgaaat ttcaaaagat
     1321 tataaacgca ttttagactg taagccctat gagcttgata ctttaaattg tcaatatata
     1381 ggtgtgggtg atgatgagtt tttcagacaa atttggcaaa atttaggtat aaatattgca
     1441 gagaaattta aggtagattt ttcttatgct agacttgata aatttatttt tgcgacatcg
     1501 ccatttggac ttacttataa tacatatgag actttagtgc aaacttatga tgaactcatg
     1561 caagatctat ctctttatgc ttgtagtggt aaattttctt ttaattttgt tccttcaaaa
     1621 ttaagcatta aaaaagaaat tcaaggagat agagaaaagg tatcataccg cgttgatgaa
     1681 atgcttgttt atgtttatga tagctttgat tttttagatc aaggacatga atttgatgat
     1741 gagggaaatt ttatcaagct aggacaacct gttggagctt gggattttaa tgaaaagagt
     1801 ttcagtattt ggggttctac aagacagatg ggaacttatg ataaaaataa aattattaaa
     1861 actgttgtag aaattgtgga taaaaaaata acctttgaag atattctccg atctccaaaa
     1921 accaaacaat actatcttta caatcaagat tatcaagact atcaaaaatt cactccttat
     1981 ggtttggatt ttagacttta tagtaaagat tttatcacta agcttgattt taaagataaa
     2041 gcttataatg tgctttataa tacaggagtt taaatgggag atagtattac gctttctatt
     2101 tttgtaggtt cattgctatc cattgctgtt atcacaaaat tttatcttat agctttatct
     2161 gtgcttattg ccttttctat tataaattat tggattaaga ttaacataaa agaatttgta
     2221 aaatcttatt ttttagtata ttttattatc ttttttacag ctattattat catattttat
     2281 cttagctatg atattgaaac ttctagggg
//
LOCUS       DBBXPZ010000133         2221 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.135, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000133 DBBXPZ010000000
VERSION     DBBXPZ010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2221)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2221)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2221
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.135"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..1384)
                     /locus_tag="ACJFD7_001728"
     CDS             complement(<1..1384)
                     /locus_tag="ACJFD7_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion protein IcmF/TssM N-terminal
                     domain-containing protein"
                     /protein_id="HGG0860496.1"
                     /translation="MFKKIFDFVKSRLFITAFLLCCIFLLSILFWFWGSLVAFNDIYI
                     FSSSFLRFSIILIIWLIVFLFFLLKPIINFISSLKSEKRLKFKVLKKEADEFIYKSKR
                     NFFLSLKDAKETWKNDLKTKNLPLIIIIGNEGAGKSTFINYSDIEYPLSDSLESYKKF
                     HKSTRNFALYVSKKGALLDTEGNYFSQEEFFKPASSDEIPEDDIDKNRDFLIKKNIWK
                     KFLTFLNKNFFHSKLNGIILVVDTIIFLNNPKEYSKNLIRYLTKRVNECEKTLNLKLP
                     IYIVFSKLDLIEGMKEYFDIFDKKISDKILGLSFDKILSEEFLNNEFKELSDSLLCSL
                     MSKNSHIYNIENKNKSYLFLKQLDNLFALAKTFILEVQEENKLKNNSYLRGVYFVSAY
                     QENIPRNFLLDAICEKYNCKKVLSKSNIIHNKQSYFVKSLLEDLIFTDYSLSTMKSYS
                     KKLSFLIIILI"
     gene            1502..2017
                     /locus_tag="ACJFD7_001729"
     CDS             1502..2017
                     /locus_tag="ACJFD7_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002862966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hcp family type VI secretion system effector"
                     /protein_id="HGG0860497.1"
                     /translation="MAEPAFIKIEGSTQGLISSGASTEASIGNRYKSGHEDEIMAQEI
                     SHIVTVPVDQQSGQPSGQRVHKPFSFTCSLNKSVPLLYNALTKGERLPTVEVHWFRTA
                     TSGGSEHFFTTKLEDAIITNIELIMPNAQESSNHDKTELLKVSMSYRKVVWEHTAAGT
                     SGSDDWREGKA"
BASE COUNT          833 a          284 c          285 g          819 t
ORIGIN      
        1 tgattaaaat tataattaaa aaagataatt ttttagaata agatttcata gtgcttaaag
       61 aataatctgt aaaaattaaa tcttcgagca gtgatttaac aaaatagctt tgtttattat
      121 gtataatatt ggattttgat aatacttttt tgcagttata tttctcacat atggcatcga
      181 gtaagaaatt tctaggaata ttttcttgat aggcactaac aaaataaact cctctaagat
      241 aagaattatt tttaagctta ttttcttctt gcacttccaa aataaaagtc tttgctaatg
      301 caaataaatt atcaagttgt tttaaaaata agtagctttt atttttattt tctatattat
      361 aaatatggga gtttttactc atcaaggaac ataataatga atcacttaat tctttaaatt
      421 cattatttaa aaattcttca cttaagattt tatcaaaaga taatcctaaa attttatctg
      481 aaattttttt atcgaaaata tcaaaatact ctttcatgcc ttcgatcaag tcgagttttg
      541 aaaaaactat ataaataggc agttttaaat ttaaagtttt ttcacattca tttactcttt
      601 ttgttagata tctaataaga tttttggaat actccttagg attatttaag aaaattatag
      661 tgtcaacaac taaaataatt ccatttagtt tgctatgaaa aaaattttta ttgagaaaag
      721 taaggaattt tttccatata ttttttttaa ttaaaaaatc tctattttta tctatatcat
      781 cttcgggtat ttcatcgcta cttgcaggct taaaaaattc ttcttgtgaa aaatagtttc
      841 cttctgtatc taacaaagca cctttttttg atacataaag tgcaaaattt ctagtagact
      901 tatggaattt tttataagac tctaaactat cactaagtgg gtattcgatg tcagaataat
      961 taataaaagt gctttttcca gctccttcat ttcctatgat gataattaag ggtaaatttt
     1021 ttgtttttaa atcattcttc catgtttctt tggcatcttt aagagataaa aagaagtttc
     1081 ttttagattt gtaaatgaac tcatcagctt ctttttttag gactttaaat tttaatcttt
     1141 tttcactttt taaagaagat ataaaattta taataggctt taataaaaaa aacaaaaaaa
     1201 cgataagcca aattatcaaa ataatactaa atcttaaaaa tgaactacta aaaatatata
     1261 tgtcattaaa agctactaaa gaaccccaaa accaaaataa aatactcaaa agaaaaatac
     1321 aacaaagcaa aaaagcagtt ataaataatc ttgatttcac aaaatcaaat atttttttaa
     1381 acatcattat tccttagtaa agtaaaaaca aattaatatg caaatatttt gcaaaaattt
     1441 aatagattaa gattaaaatg atacaatttt gaatgttaaa aaaaattaaa ggagtttttt
     1501 tatggctgaa ccagcgttta taaaaattga aggttccaca caaggtttga tttcaagcgg
     1561 tgcatctact gaagcgagta ttggcaatag atataaatcg ggtcatgaag atgaaatcat
     1621 ggctcaagag atatctcata ttgtaaccgt acctgttgat cagcaaagcg gacaaccttc
     1681 tggacaaaga gttcataagc ctttttcttt tacttgctca ttaaataaat ctgtgccttt
     1741 gctatataat gcacttacca aaggagaaag acttccaaca gtcgaagttc attggtttag
     1801 aaccgcaaca agtggcggat ctgaacattt ttttactaca aaattggaag atgcaattat
     1861 tacaaatatt gaattaataa tgccaaatgc gcaagagtca agtaatcatg ataaaaccga
     1921 gcttttaaaa gtttcaatga gctatagaaa agtagtttgg gaacatactg ctgctggaac
     1981 tagcggaagt gatgattgga gagagggcaa agcttaatta taatttatct taaataatcc
     2041 tgactaaaat acataattat agttgggatt gtatcgtgaa ttatatccat ggcataatta
     2101 tgatacgacc ttatacttat ttgtactaat aatttgcata attaaagctt gtttttatat
     2161 tatttttatc cttttatagg ttttacattt gatttttatt ctagcagtaa aacaattttt
     2221 a
//
LOCUS       DBBXPZ010000134         2197 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.136, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000134 DBBXPZ010000000
VERSION     DBBXPZ010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2197)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2197)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2197
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.136"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            27..290
                     /gene="rpsT"
                     /locus_tag="ACJFD7_001730"
     CDS             27..290
                     /gene="rpsT"
                     /locus_tag="ACJFD7_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HGG0860498.1"
                     /translation="MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDK
                     NAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLALLVNKIA"
     gene            309..1376
                     /gene="prfA"
                     /locus_tag="ACJFD7_001731"
     CDS             309..1376
                     /gene="prfA"
                     /locus_tag="ACJFD7_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HGG0860499.1"
                     /translation="MLASKLDPFLKRFEELNSLLSSSDIINDISKMTTLSKEQKNLEP
                     IVLKAKEYLKTLDNIEENKALLNDPELGELAKEELKTLEELKPKLEEEIKILLLPKDP
                     NDERNIFLEIRAGAGGDEASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEII
                     MLVKGTGAYSRLKYEGGTHRVQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDL
                     KVDVMRSSGHGGQSVNTTDSAVRITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYE
                     MQESERLAKESEARKSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLF
                     DEIIEPLITHHQAQALQEQNL"
     gene            complement(1390..2145)
                     /locus_tag="ACJFD7_001732"
     CDS             complement(1390..2145)
                     /locus_tag="ACJFD7_001732"
                     /EC_number="1.14.14.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004392 - heme oxygenase (decyclizing)
                     activity [Evidence IEA];
                     GO_process: GO:0042167 - heme catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HugZ family heme oxygenase"
                     /protein_id="HGG0860500.1"
                     /translation="MNFESIISHMNDHHKSNLVDLCKKFGGIEQVQDVFLKSVDFNGL
                     DLVYNDKENLRVEFPKKADENTIKDAIISLCMSAKSEQNFSGVEKELNEFMLSFNSVA
                     LATLNANGEVVCSYAPFVSTQWGNYIYISEVSEHFNNIKVNPNNIEIMFLEDESKAAS
                     VILRKRLRYRVNASFLERGERFDQIYDEFEKQTGGEGGIKTIRKMLDFHLVKLEFKKG
                     RFVKGFGQAYDIENGNVTHVGASGNPHKFLHKH"
BASE COUNT          806 a          368 c          344 g          679 t
ORIGIN      
        1 tttaatttca aaaaaggaaa atataaatgg caaaccataa atctgctgaa aaaagagcga
       61 gacaaactat taaaaaaaca gaaagaaata gattctatag aacaagactt aaaaatataa
      121 ctaaagccgt aagagaagct gcagcaaatg gagataaaaa tgctgctaat gaagctttaa
      181 aagtagctaa taaaagcatt catgctatgg taagtcgcgg tttcattaaa aaacaaactg
      241 cttctcgccg tgtaagccgc ttagcccttt tagtaaataa aatcgcataa ttttctatat
      301 agtttttaat gttagctagc aaactagatc cttttttaaa acgctttgaa gagttaaatt
      361 ctcttcttag cagttctgat ataatcaacg atatcagtaa aatgactaca ctctctaaag
      421 aacaaaaaaa tttagaacct atcgttttaa aagctaaaga gtatttaaaa actttagaca
      481 atatagaaga aaataaagct ttgctaaacg atccagaact tggggaactt gcaaaagaag
      541 aactaaaaac tttagaagaa ttaaaaccaa agcttgaaga agagattaaa attttacttc
      601 ttcctaagga tcccaatgat gaaagaaata tttttcttga aattcgtgca ggcgcaggtg
      661 gcgatgaggc atctttattt gtaggagatc ttgtaaaagc ttatgcaaga tatgctgaaa
      721 atcgtggcta taaacttgag attgtaagtt ctagtgaagg aagtgtaggt ggatttaaag
      781 aaatcatcat gcttgttaaa ggaacaggag cttattcaag acttaaatat gaaggtggaa
      841 cgcaccgtgt tcaaagagtt cctcaaacag aatcccaagg acgcgtgcat acttctgcta
      901 tcaccgtagc agtaatgcca gaagttgatg atatagaaat cgaaatcaat ccaaacgatc
      961 ttaaagttga tgttatgcga tcttcaggac atggtggaca aagtgtaaat actactgatt
     1021 cagctgttcg tatcactcat atccctacag gtatagttgt agtcaatcaa gatggaaaaa
     1081 gccaacacaa aaataaagaa agtgcgatga aagtcctaaa agcaaggctt tatgaaatgc
     1141 aagagagtga aagactggca aaagaaagtg aagcaagaaa atcacaagta ggaagcggag
     1201 atagaagtga acgcattcgc acttacaatt ttccacaaaa tcgtatcagc gatcatagaa
     1261 taaatcttac tttatatcgc ttagatgcca ttatgcaaga tgggcttttt gatgaaatca
     1321 tagaaccttt aatcactcat catcaagccc aagctttaca agaacaaaat ttataagatt
     1381 ttatataaat taatgcttat gtaggaattt atgtggattt ccactagcac ctacatgtgt
     1441 aacatttcca ttttctatat cataagcttg accaaaacct tttacaaagc gtcctttttt
     1501 aaattcaagc tttactagat gaaaatcaag catcttgcgt atagttttaa tgcctccttc
     1561 tcctccggtt tgtttttcaa actcatcata aatttgatca aatctttcac ctctctctaa
     1621 aaagcttgca tttactctat agcgcaatct tttgcgaagt atcacagaag cggctttact
     1681 ctcatcctct aaaaacatta tttctatatt gtttggattt actttgatgt tgttaaaatg
     1741 ttcgcttact tcacttatat aaatataatt tccccattgt gtgcttacaa aaggtgcata
     1801 cgagcaaaca acttctccat ttgcatttaa agttgccaaa gctacagaat taaaacttag
     1861 cataaattca tttaattctt tttctacgcc actaaaattt tgctcgctct ttgcactcat
     1921 gcaaagggat attatagcat ctttaatcgt gttttcatcg gcttttttag gaaattccac
     1981 tcgtaaattt tctttatcat tgtaaacaag atccaagcca ttaaaatcaa cactttttag
     2041 aaaaacatct tgtacttgct caataccacc aaatttttta caaagatcaa ctaaatttga
     2101 tttatgatga tcattcatat gagaaataat gctttcaaaa ttcattttta tcctttcttg
     2161 attttaaaat aaaatattaa aaaaaatggt atcaatt
//
LOCUS       DBBXPZ010000135         2165 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.137, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000135 DBBXPZ010000000
VERSION     DBBXPZ010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2165)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2165)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2165
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.137"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..1951
                     /locus_tag="ACJFD7_001733"
     CDS             <1..1951
                     /locus_tag="ACJFD7_001733"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860501.1"
                     /translation="KKMDRELFITRLAFINNDEIDTIDKNSSIAYLKALYQCENSIAI
                     NYNQEELFTQATAINNLGYNSTFTKIFILDKEKLNDTYLDARKRLYKSINTLKEKRNE
                     KIKDIQDYLNKEISLQDNLNNQSFNTKENDVNLILNEVFNIEQFYDKNTNTIVLKTNN
                     IKIIFLDKVNLQDLQDNSNNTSFISMSNLIHIYDNHCDIFAKDRSVLDIKDIEEKYQI
                     DFKSLDIKIFLNSTLLTGSNELPNNPFYFGELDQDNTIKQDTPSYYFSPKDESSGKGR
                     LSIFYKNDELCLLNYSIIENSLNIKLECLSKQSLEYKDLISNTLKEQKTTQVDKKQAI
                     AKLHALLENQNLECIHGGKVILKSNKGKTFKDDGVPIMLESDLLNSSIVACPNTIAGV
                     SVPCTKVVNVKGSLSQKKVNNEYVILQELISACKTDKGFALKVSFTPTKFKFDHSFDP
                     KEGLGEQSKNQIELKEPIIRLHYKSDRFQKDNLLIYNLLINNEKKEQDKALNEFNIDL
                     KDLKDLKDIEDVNILNQFKQDFSKDYEFKELNLSFDTNLIKLYFIIPKNIAKAYKSAY
                     KEFENKDLGAGYFTQLHEYDKIIKNALEDNKELNEYHFSFLAPAKMQNLKLQIAQGLD
                     EILEDEDRKQELYVCKFVVVNGVKI"
     gene            1948..>2165
                     /locus_tag="ACJFD7_001734"
     CDS             1948..>2165
                     /locus_tag="ACJFD7_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860502.1"
                     /translation="MKIKNFTLIASNHNLEIELKNLTKNANKIIFICSDFDGYKEAKN
                     SLYKTLHTIEDNFKIDNTKTFKIIHLNQA"
BASE COUNT          939 a          267 c          276 g          683 t
ORIGIN      
        1 gaaaaaaatg gatagagaat tatttataac aaggcttgct tttataaaca atgatgaaat
       61 agacacaata gataaaaatt catccatagc atacttaaaa gccttatatc aatgtgaaaa
      121 ttccatagct ataaattata atcaagaaga gcttttcacc caagctaccg ctataaacaa
      181 tctaggctat aattctactt tcacaaaaat cttcatccta gataaagaaa agctcaatga
      241 tacctatctt gatgctagaa aaaggcttta taaatctatc aatactttaa aagaaaaaag
      301 aaatgaaaaa ataaaagata tccaagacta tttaaataaa gaaatttcct tacaagataa
      361 tctaaataat caaagcttta atactaagga aaatgatgtt aatttaattt taaacgaagt
      421 atttaacata gagcaatttt atgataaaaa taccaatacc atagtattaa agacaaataa
      481 tataaaaatc atattcttag ataaagtaaa tttacaagat ttgcaagata attctaacaa
      541 tacttctttc atctctatgt caaatttgat ccatatttat gataatcatt gtgatatttt
      601 tgcaaaagat agaagtgttt tggatataaa ggacatagaa gaaaaatatc aaatagattt
      661 taaaagttta gatataaaaa tcttcctaaa ctccaccctc cttacaggct caaatgaact
      721 tcctaataat cctttttact ttggagaatt agatcaagat aatactataa aacaagatac
      781 acctagttat tatttttctc ctaaagatga aagcagtggc aaaggaagac ttagcatctt
      841 ttataaaaat gatgaacttt gcttgcttaa ttattctatt atagaaaatt ctttaaatat
      901 caaattagaa tgtttaagca aacaaagctt agagtataaa gacttaattt caaacacttt
      961 aaaagaacaa aaaaccacac aagtagataa aaaacaagct atagctaaac ttcatgctct
     1021 tttagaaaat caaaacctag aatgtatcca tggaggtaaa gtcatactta aatcaaacaa
     1081 aggaaaaact tttaaagatg atggtgtgcc tataatgcta gaaagtgatt tattaaactc
     1141 tagtatagta gcttgtccta atactatagc aggtgtaagt gttccttgta ctaaagttgt
     1201 taatgtaaaa ggatccttat ctcaaaagaa agtcaataat gaatatgtaa tcttacaaga
     1261 actcatctca gcttgtaaaa cagataaagg ctttgcttta aaagtaagct ttactcctac
     1321 taagtttaaa tttgatcaca gctttgatcc taaagagggc ttaggagaac aaagtaaaaa
     1381 tcaaatagag ttaaaagagc ctataataag acttcattat aaaagtgata gatttcaaaa
     1441 agataattta cttatctata atcttttaat caataatgaa aaaaaagaac aagataaggc
     1501 tttaaatgaa tttaatatag atttaaaaga tttaaaagat ttaaaagata tagaggatgt
     1561 taatattctt aatcaattca aacaagactt tagtaaagat tatgaattta aagaattaaa
     1621 tcttagcttt gatactaatt taatcaaact ttattttatt atcccaaaaa acattgctaa
     1681 agcttataaa agtgcttata aggaatttga aaataaagat ttaggagcag ggtattttac
     1741 acagctacat gagtatgata aaatcatcaa aaatgcttta gaagataata aagaattaaa
     1801 tgaatatcat tttagttttt tagctcctgc aaaaatgcaa aatttaaaac ttcaaatcgc
     1861 acaaggacta gatgaaatct tagaagatga agatagaaaa caagagcttt atgtttgtaa
     1921 atttgtggtg gtaaatgggg ttaaaatatg aaaataaaaa attttacttt aattgcatca
     1981 aatcataatt tagaaatcga gttaaaaaat cttaccaaaa atgctaataa aattattttt
     2041 atatgcagtg attttgatgg atataaagaa gctaagaatt ctttgtataa gacactacat
     2101 actattgaag ataattttaa aattgataat acaaaaactt ttaaaatcat acatttaaat
     2161 caagc
//
LOCUS       DBBXPZ010000136         2074 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.138, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000136 DBBXPZ010000000
VERSION     DBBXPZ010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2074)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2074)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2074
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.138"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..1354)
                     /locus_tag="ACJFD7_001735"
     CDS             complement(<1..1354)
                     /locus_tag="ACJFD7_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mbeg1-like protein"
                     /protein_id="HGG0860503.1"
                     /translation="MKELINNLRDYAELAQASYFNFMYINNDEREMDSYKIGQNRFPK
                     DKDNIENLEYTKTLSKKYKDYFIYDDSIALYPTLNGEFGEIQAKNFAKKYEIKFHQPN
                     TASGFSATLFYDKEKDKFVVGFRGTEGLWSMDTLADIGLTFGKGDFQLNALKQFLLDI
                     APILNKVDSNNIIFIGHSLGGYLAVIAMQFCDTIDRSLNTQFNAIKFMVSQVYTFNSP
                     AIDEIDNMLMRALAALLDKNIMEQVLNPQKVYCVYDSGGINIIASAQYGSHNRLPIYT
                     GKDSHSIIPLTQTLYFYSYLLELDANHNKVKDKSFSECIEYLNHFMKNIQIYTETFVL
                     KNNATNKNSSFGFNKNHPEKINHFEYSLSLIATIMQETNGILEELGDNYYASYKAPTI
                     SQTKIIDFILKAQEKEKYILILDKNDFNKYRKDCSFINNQENLAHKIAIGEFRIFIVV
                     Y"
     gene            complement(1611..>2074)
                     /locus_tag="ACJFD7_001736"
     CDS             complement(1611..>2074)
                     /locus_tag="ACJFD7_001736"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860504.1"
                     /translation="KEIKMKTQINNLKDYAELAWASYFYFDFLNTRNIFELDFNQEKI
                     QEENSLRGYREIKVNLEHVVSQKHKDKEVLIDLRQDDAWQSKMLNFFDEKTNFDKLNG
                     EFGELQTKNFIQRYEVQFHQPNTTSGFSAALFYDTHKDGFVVWFRETECGF"
BASE COUNT          703 a          342 c          262 g          767 t
ORIGIN      
        1 tataaaccac aatgaaaatt ctaaattccc caatggcaat tttatgagct aagttttctt
       61 gattattaat aaaggaacaa tcttttctgt atttattaaa atcattttta tcaagaatta
      121 aaatatattt ttctttttct tgcgccttta aaataaaatc tatgattttt gtttgactaa
      181 tggtaggagc tttatagctt gcataataat tatctccaag ctcttctaaa ataccatttg
      241 tttcttgcat tatagtggct attaatgaaa gagaatactc aaagtggtta atcttttctg
      301 gatggttttt attgaaccca aaagagctat ttttattagt agcattattt tttaacacaa
      361 aagtttctgt atatatttga atatttttca taaaatgatt aagatactct atacactcac
      421 taaaactttt atctttgact ttgttatggt tagcatctaa ttctaaaaga taggagtaga
      481 agtaaagagt ttgagttagg gggattatgg agtgagaatc tttacccgta tagataggca
      541 gtctattgtg tgagccatat tgagcagaag cgatgatatt tataccaccg ctgtcataga
      601 cacaatatac tttttgagga tttaagactt gctccataat atttttatct aataatgctg
      661 ccaaagcccg cattagcata ttatcaatct catcaatagc aggagaatta aaagtataga
      721 cttgcgatac cataaatttg attgcattaa attgtgtatt taagctccta tcaatagtat
      781 cgcaaaattg cattgctata actgctaaat atccgcctaa agaatgccct ataaaaataa
      841 tattatttga atctactttg tttaaaatag gtgctatgtc taataaaaat tgctttaaag
      901 cattaagttg aaaatcgccc ttaccaaagg taagccctat atccgccaaa gtatccatac
      961 tccaaagtcc ctctgtcccc ctaaacccta ctacaaactt atctttttct ttatcataaa
     1021 acaaagtagc actaaagcca gaagccgtat ttggttggtg gaatttaatc tcatattttt
     1081 tagcaaagtt tttagcttga atctccccaa attctccatt aagtgtcgga tatagtgcaa
     1141 tggaatcatc ataaataaaa taatctttat attttttaga taaggtcttt gtatattcta
     1201 aattttctat attgtcttta tctttaggga atctattttg ccctatttta taactatcca
     1261 tttctcgctc atcgttattg atatacataa agttaaaata acttgcttgg gccaactcgg
     1321 catagtctct tagattgttg attaattctt tcatttagtc tcctaaagtt aatttagcac
     1381 caaaaacaga gcaaatgcca aagggtaata taaaaacaat attaaaaaat tccttaaata
     1441 ttttttaatt cttgttattc caaaaagcca tagattggct atcattagtg gaaagactat
     1501 ccaaccaagc attataaaaa actcctcaac cctatttgga ttatgtccaa caataggaga
     1561 tataaaccaa cctacaacac ataatataat ccaacaaata taaagtattt ttagaatccg
     1621 cattctgttt ccctaaacca caccacgaaa ccatctttgt gtgtatcata gaacaaagca
     1681 gcagaaaagc cacttgtagt gttaggctga tgaaattgaa cctcatatct ttgaatgaaa
     1741 tttttagtct gtaattctcc aaattctcca tttagtttat caaaatttgt cttttcatca
     1801 aagaaattta acatttttga ttgccaagca tcatcttgtc ttaaatcaat caatacttct
     1861 ttatctttat gtttttgact gacaacatgt tctaaattta cctttatttc tctatagcct
     1921 ctaagagaat tttcttcttg aattttttct tgattaaaat ctaactcaaa tatatttcta
     1981 gtatttaaaa aatcaaaata aaaataacta gcccatgcaa gttctgcata atcttttaaa
     2041 ttattgattt gagttttcat ttttatttct ttta
//
LOCUS       DBBXPZ010000137         2068 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.139, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000137 DBBXPZ010000000
VERSION     DBBXPZ010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2068)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2068)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2068
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.139"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(122..754)
                     /locus_tag="ACJFD7_001737"
     CDS             complement(122..754)
                     /locus_tag="ACJFD7_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860505.1"
                     /translation="MLPQPIFLNKLIEFLSDENLDIVNMKKGVDKIFSKKDFYAILEL
                     NIKIMNIAKLIFKSDEQLNILLPQASDYKNTNYFPQELELKKEMDVNLNDLKNCDNKK
                     IIEIIKQEYQNNLIKELDINSQKEKIKILFIINEVPKFLKSIYKECEFKEYGLANYLE
                     FDEIWGFYENNTRYFTILTPMGANKIKLRLENTQNSEKELNIIEVNLDKK"
     gene            complement(754..1104)
                     /locus_tag="ACJFD7_001738"
     CDS             complement(754..1104)
                     /locus_tag="ACJFD7_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860506.1"
                     /translation="MEDLKLLQRRWEEAYEAMPKLYETPDGLIINFTLSGDTDTILFK
                     KPWENFELDDEDKETKWRLSFFSISKDEPLGYLEYKEALEKLQDFSLIQSEERILIRA
                     MSLEELESLELKGW"
     gene            complement(1189..1740)
                     /locus_tag="ACJFD7_001739"
     CDS             complement(1189..1740)
                     /locus_tag="ACJFD7_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1629 domain-containing protein"
                     /protein_id="HGG0860507.1"
                     /translation="MMYNGQHNDVDNWINCIKPDIKNNDKYALLESKPITNWQTPSFE
                     IDKDDGKILTDLISNVYNWRIVSPKFINLMQDLIKDCVQYLDVEIKSQEINYYGCKIM
                     HVIKSLEALDYEHSVYTYMGDNDEYLSITKAVLKKSKLDGSHIFRIKDDEVPVFVSSE
                     FRKIVRENNLLGFSFSEVMVYEN"
     gene            complement(1755..>2068)
                     /locus_tag="ACJFD7_001740"
     CDS             complement(1755..>2068)
                     /locus_tag="ACJFD7_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AHH domain-containing protein"
                     /protein_id="HGG0860508.1"
                     /translation="DNKQPPIQTHHIATNKSKKYTPKFQEILNSYDLKLNGDWNKVKM
                     PHRGRHPNEYHEYILEKMSKIDKIARGDKNKFLKEFEKLKEEVKNNPAILHKDYYKER
                     K"
BASE COUNT          669 a          298 c          194 g          907 t
ORIGIN      
        1 gtttatggtg tttataattt ggtataaatc cactatgttt ttaattttta tatttattat
       61 tttaacacaa atagtctaaa tttgagtaga aaaagaaatt gcttattttt gttattaaaa
      121 tctatttttt atctaaattt acttctatga tattgagttc tttttcgctg ttttgtgtat
      181 tttctaaacg caattttatt ttatttgcac ccatgggagt taaaatagta aaatatctag
      241 tattattttc ataaaaaccc caaatttcat caaattccaa ataatttgct aatccatatt
      301 ctttaaactc acattcttta tagattgatt ttaaaaattt tggcacttca ttaataataa
      361 aaagtatttt gattttttct ttttgagaat taatatccaa ttctttaatc agattatttt
      421 gatattcttg cttaattatt tctattattt ttttattatc acaatttttt aaatcattaa
      481 gattaacatc catttctttt tttaactcta attcttgagg aaaataattt gtattcttat
      541 aatcagaagc ttgtggtaat aatatattta attgttcatc acttttaaaa attaatttcg
      601 ctatattcat aattttaata tttaattcta atatagcgta aaaatctttt ttagaaaaaa
      661 ttttatctac accttttttc atatttacaa tatctaaatt ttcatcagat aaaaattcta
      721 taagtttatt taaaaatata ggttgaggaa gcattaccac cctttaagct ctaagctttc
      781 aagctcttct aaactcattg ctctaattaa aatcctttct tctgattgaa ttaaagaaaa
      841 atcttgcaat ttctctaaag cttctttata ctctaaatac cccaaaggct catctttgct
      901 aatgctaaaa aaactcagcc tccatttggt ttctttatct tcatcatcta attcaaaatt
      961 ttcccaaggt tttttaaaaa gaatagtatc tgtatctcca cttagggtga aatttattat
     1021 taacccatct ggtgtttcat aaagtttagg catagcttca taagcttctt cccaacgcct
     1081 ttgtaaaagt tttaaatctt ccataaattt ttccttaaat ataaaatgaa attataacta
     1141 aaaatctttt tatattaaat tgcaaaattt tttatagctt ttagtctttc aattttcata
     1201 taccataact tcactaaaac taaaacctaa taaattgttt tctcttacta tttttctaaa
     1261 ttcacttgat acaaaaacag gtacttcatc atctttaatt ctaaatatat ggcttccatc
     1321 aagttttgat ttttttaaaa cagctttagt aatacttaaa tattcatcat tatcacccat
     1381 ataagtatat acagaatgtt cataatctaa agcctcaagt gattttatta catgcataat
     1441 tttacaacca taataattta tttcctgact tttaatttct acatctaaat attgcacaca
     1501 atctttaatt aaatcttgca ttaaatttat aaatttagga gagactatac gccaattata
     1561 tacattagat attaaatcgg tcagtatttt accatcatct ttatcgattt caaaactagg
     1621 tgtttgccaa tttgtgatag gtttggattc taaaagtgca tatttgtcat tattttttat
     1681 atctggttta atacaattta tccaattatc aacgtcatta tgttgtccat tatacatcat
     1741 tttataatat ttcattattt tctctcctta tagtaatctt tatgaagtat agcaggatta
     1801 tttttgactt cttcttttag tttttcaaat tcttttaaga atttattctt atctcctctt
     1861 gctattttat caattttact cattttttca agaatatatt catgatattc attaggatgt
     1921 cttccgcgat gtggcatttt aactttattc caatctccat ttagttttaa atcatatgaa
     1981 ttaagtatct cttgaaattt tggagtatat tttttactct tattagtggc aatatgatgg
     2041 gtttgaattg gtggttgttt gttatcgc
//
LOCUS       DBBXPZ010000138         1968 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.140, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000138 DBBXPZ010000000
VERSION     DBBXPZ010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1968)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1968)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1968
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.140"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..1259
                     /gene="tssK"
                     /locus_tag="ACJFD7_001741"
     CDS             <1..1259
                     /gene="tssK"
                     /locus_tag="ACJFD7_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssK"
                     /protein_id="HGG0860509.1"
                     /translation="LEFSQEMLLQGKIALSKISGIAQDGSIFNAPEQDLLPEPIEINY
                     ESLIDSVVVLKIPIGVTDIADLSLRNTFPNSKFICLRNSIALRNYDDSKSNVMDKIED
                     EYELENLTFTQEKKDLLLASLRLKLGILGNSTPDELELPIAKIKNIDINKKIELESDF
                     IPTCLNISKISTIRSFLEEIIFSINQHKKVLSNVFKGIDQTKNTLDFSTFLSLNLLKK
                     WYLIFSHLSKKDKIHPEFLYEKFLEFQGELAAFSNEESFLDFIPYKHDNLYNTFLNMM
                     NNLRLLFSKITSPKYFIAKTSINGNGFYDFIFDNSGILEESEIYFAIRADVTTEYLLN
                     NFKIQSKIHTQSKIKNIVATQLEGLNVDQVPNVPSSIPYLNGYVYYKLDKRDQLFKDF
                     KNESIISMYLTNNIKNPDIIMWAVFQ"
     gene            1256..>1968
                     /gene="icmH"
                     /locus_tag="ACJFD7_001742"
     CDS             1256..>1968
                     /gene="icmH"
                     /locus_tag="ACJFD7_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IVB secretion system protein IcmH/DotU"
                     /protein_id="HGG0860510.1"
                     /translation="MKEINEEKKALSLLLDSDFDGLKNNKIIDYSLELLLLSYRLSKI
                     SSMDTSSINQLRETLINKILDITAKLSICKEYDEKEIIKFKYCLCVFIDESLMKNELF
                     INFWAHNTLTVRLFDETLGGNNFYDIASSWINNPFKFKDFLEFIYACLILGYKGKYNE
                     TKDRDEKIIHFCNNIATSLKPVYKIEEELAFNKAYKTGLKENIWQKFIRLYFKKLIIV
                     VPVLIILGVLSYAIFNLET"
BASE COUNT          757 a          224 c          274 g          713 t
ORIGIN      
        1 acttggaatt ttctcaagag atgttattgc aaggaaaaat tgcactttct aaaatttcag
       61 gtatcgcaca agatggaagc atttttaatg cacctgagca agatttgttg cctgagccta
      121 ttgaaatcaa ttatgaatct ttaattgatt cagttgtggt attaaaaatt cctatcggag
      181 ttactgatat tgctgattta tctttaagaa atacttttcc aaattcaaag tttatatgtc
      241 ttagaaatag tattgcttta agaaattatg atgattcaaa atctaatgta atggacaaaa
      301 ttgaagatga gtacgaactt gaaaatctga cttttacaca agagaaaaaa gatttacttc
      361 ttgctagttt aagattaaaa cttggcattt taggtaattc aactcctgat gaacttgaat
      421 taccaattgc aaaaattaaa aatattgata tcaataaaaa aattgaatta gaaagtgatt
      481 ttatacccac ttgcttaaat atcagcaaaa tatctaccat aagatccttt ttggaagaaa
      541 ttattttttc aatcaatcaa cataaaaaag ttctatctaa tgtttttaaa ggaatcgatc
      601 aaacaaaaaa tacattggat tttagcactt ttttatccct taatctttta aaaaaatggt
      661 atttaatatt ttcacatcta tcaaaaaaag ataaaataca tcctgaattt ttatacgaaa
      721 aatttttaga atttcaagga gagcttgcag cttttagcaa cgaagaatct tttttagatt
      781 ttattcctta taaacacgat aatctttata atactttttt aaatatgatg aataatctaa
      841 gattgttatt ttctaaaatc acaagcccta aatattttat agctaagacc agtattaacg
      901 gcaatggttt ttatgatttt atttttgata attcgggaat tttagaagaa agtgaaattt
      961 atttcgcaat tcgtgcagat gttactacag aatatctact taataatttt aaaattcaaa
     1021 gcaagataca tactcaaagt aaaattaaaa atatagtcgc aactcagctt gagggcttaa
     1081 atgtagatca agtacctaat gttccatcta gcattcctta tttaaatggt tatgtttatt
     1141 ataaattaga taaaagagat caactgttta aagattttaa aaatgaaagt atcattagta
     1201 tgtacttgac caacaatata aaaaaccctg atattataat gtgggcggta tttcaatgaa
     1261 agaaataaat gaagaaaaaa aggcattaag cttacttctt gattcagatt ttgatggttt
     1321 aaaaaacaat aaaattattg attattcttt ggagttgctt ttgctttctt atagactttc
     1381 aaaaataagc tctatggata caagtagtat taatcaactt agagaaacat tgattaataa
     1441 aattttagat ataaccgcta aattaagtat atgtaaagaa tatgatgaaa aagaaattat
     1501 taaattcaaa tattgtcttt gtgtctttat agatgaaagc ttaatgaaaa atgaactttt
     1561 tattaatttt tgggctcaca atactctaac tgtaaggtta tttgatgaaa ctttaggtgg
     1621 aaataatttt tatgatattg catcatcttg gattaataac ccttttaagt ttaaagattt
     1681 tttggaattt atctatgctt gtttaattct tggttataaa ggaaaatata atgagactaa
     1741 ggatagagat gaaaaaataa ttcatttttg caataatatt gccacatctt taaaaccggt
     1801 ttataagata gaagaagagt tagcttttaa taaagcatat aaaactggtt tgaaagaaaa
     1861 tatttggcaa aaatttataa gattgtattt taaaaaactt attatcgttg tgccagtatt
     1921 gattatatta ggagtattaa gctatgcaat tttcaattta gaaaccaa
//
LOCUS       DBBXPZ010000139         1802 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.141, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000139 DBBXPZ010000000
VERSION     DBBXPZ010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1802)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1802)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1802
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.141"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            35..1066
                     /gene="pseI"
                     /locus_tag="ACJFD7_001743"
     CDS             35..1066
                     /gene="pseI"
                     /locus_tag="ACJFD7_001743"
                     /EC_number="2.5.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid synthase"
                     /protein_id="HGG0860511.1"
                     /translation="MQIGNFNTDKKVFIIAELSANHAGSLEMALQSIKAAKKAGADAI
                     KIQTYTPDSLTLNSDKEDFIIKGGLWDKRKLYELYESAKTPYEWHSQIFETAQNEGIL
                     CFSSPFAKEDVEFLKRFDPIAYKIASFEANDENFVRLIAKEKKPTIVSTGIATEEELF
                     KICEIFKEEKNPDLVFLKCTSTYPTAIEDMNLKGIVSLKEKFNVEVGLSDHSFGFLAP
                     VMAVALGARVIEKHFMLDKSIESEDSKFSLDFDEFKAMVDAVRQAESALGDGKLDLDE
                     KVLKNRVFARSLYASKDIKKGEMFSEENVKSVRPSFGLHPKFYQELLGKKASKDIKFG
                     DALKQGDFQ"
     gene            1063..>1802
                     /locus_tag="ACJFD7_001744"
     CDS             1063..>1802
                     /locus_tag="ACJFD7_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF115 domain-containing protein"
                     /protein_id="HGG0860512.1"
                     /translation="MTFTPTQKELFNKNIEALNNILLKESLKEIKSSKFELILGKDNL
                     DINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFK
                     ALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARLMVLENDKLQAQDYTELCSS
                     KPFFQFSRIYFLELMSHYYERFHEDVLGLNKKLAENFKNSIVSHGNDPLDALQGIEQF
                     VYNLPQMITHPSYKELLSKRKNLSDTAI"
BASE COUNT          687 a          244 c          300 g          571 t
ORIGIN      
        1 ttttagtcag gaaatttacc aaagaaagaa aagtatgcaa ataggaaatt ttaacaccga
       61 taaaaaggtt tttatcatag cagaacttag tgcaaatcac gcaggaagtc ttgagatggc
      121 acttcaaagt ataaaagctg ccaaaaaagc aggtgctgat gcgataaaaa tccaaactta
      181 cactccagat agcctcacac taaatagcga taaagaagat tttatcatca aaggaggact
      241 ttgggacaaa agaaaacttt atgagcttta tgaaagtgca aaaacccctt atgaatggca
      301 ttctcaaatc tttgaaaccg cacaaaatga aggcatactt tgtttttcaa gtccctttgc
      361 taaagaagat gtagaatttc ttaaacgctt tgatcctata gcctataaaa tcgcttcttt
      421 tgaagccaat gatgaaaatt tcgtgcgttt aatcgccaaa gaaaaaaaac ctactatcgt
      481 ttcaacgggc attgctacag aagaagaact ttttaaaatc tgtgaaattt ttaaagaaga
      541 aaaaaatcct gatttagtct ttttaaaatg tacttcaact tatcctactg ccatagaaga
      601 tatgaattta aaaggtatag taagtttaaa agaaaaattt aatgttgaag tgggactaag
      661 tgatcatagc tttggctttt tagcccctgt tatggcagta gcacttggag ctagagtgat
      721 agaaaagcat tttatgttag ataaaagcat agaaagtgaa gacagtaaat ttagtcttga
      781 ttttgatgaa tttaaagcta tggtagatgc agtaagacaa gctgaaagtg ctttaggcga
      841 tggtaagtta gatctagatg aaaaggtgct taaaaaccgt gtttttgcaa gaagcttata
      901 tgcaagtaag gatatcaaaa aaggtgaaat gttcagcgaa gaaaatgtaa aatccgtgcg
      961 tccttctttt ggactacatc ctaaatttta tcaagaactt ttaggaaaaa aagccagtaa
     1021 agatataaaa tttggcgatg ctttaaaaca aggagatttc caatgacctt cacccctact
     1081 caaaaagaac tctttaacaa aaacattgag gctttaaaca atattctttt aaaagaaagt
     1141 ttaaaagaaa ttaaatcaag taaatttgaa cttatcttag gtaaagataa tctagatatc
     1201 aatttaaaag atacaagtat aaaaaataat gggggggggt ataatgaaaa tttactttat
     1261 caagatccca ttaaagaatt gcaaactatg ctaaacacct ataatgacaa atacctactt
     1321 tatcctgtat tgtattttta tggttttgga aatggaattt tatttaaagc tttattgcaa
     1381 aataaaaatc atcaacatat tgttgttttt gaaaaagata tagaaatcat ttggataatg
     1441 tttcatatct tagatttttc aagtgaattg caaagtgcaa gattgatggt tttggaaaat
     1501 gataaattac aagctcaaga ttatactgaa ctttgttctt ctaaaccttt ctttcaattt
     1561 tctagaattt attttttaga actgatgagt cattattatg aaagatttca tgaggatgtt
     1621 ttaggattga ataaaaaatt agcagaaaat tttaaaaatt ctattgtttc tcatggcaat
     1681 gatcctcttg atgctcttca aggtatagag caatttgttt ataacttacc tcaaatgatc
     1741 actcatccta gttataaaga attactttct aaaagaaaaa atttaagtga tacagctatc
     1801 at
//
LOCUS       DBBXPZ010000140         1741 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.142, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000140 DBBXPZ010000000
VERSION     DBBXPZ010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1741)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1741)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1741
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.142"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..1621
                     /locus_tag="ACJFD7_001745"
     CDS             <1..1621
                     /locus_tag="ACJFD7_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HGG0860513.1"
                     /translation="FIQNVILYELFWQVQELVNHPEKLSFMNQAKIHKYLDLLDQVFC
                     FIDKQSIIKFNFNPFLFLHKMGFLHCFKKEKVPIDKVFIEQIDDKNDEILIKFYTADI
                     NDEVKMLFDDKSAKIICSKIRQYDFLNRVFIYERRIWFKFFINAKNMICFINDKNVGI
                     IYQEKKCTFYDVFYEIKKLKKRRAKNKSLWLFADMPFRADDNAEHLYRYVMKNHLKQN
                     IVFVLRKNSHDYKRLKKEGFKLVDPKSFKFKYLVFKADKLISSHIDRYFFEALGENTL
                     KTKDFIFLQHGITKDDLSSWLNQRKIDLFITGMQDEYDSIVGDFNRYKFTPKEVKLTG
                     FPRWDALLKNNKINTKQILIMPTWREYIVGSYSKKLMKRRFNPKFYESEYFYRWGSFL
                     HSKKLQELHEKYNYKIVFNPHPQIRPYLEGFDLPNYIITPSVEISMQKLFCESSLMIT
                     DYSSVAFEMAVLKKPVIYYQFDKNELFSRHTYTQGYFDYNKDGFGTVVLDIDNLLYEL
                     KMKLQNHSFKNNFLIPKANSLEKVTQVILSI"
     gene            complement(1610..>1741)
                     /locus_tag="ACJFD7_001746"
     CDS             complement(1610..>1741)
                     /locus_tag="ACJFD7_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HGG0860514.1"
                     /translation="YRRRKLQKMMSYELTHIKQHRPDIVASWKYYQEFEKMCKELDG"
BASE COUNT          655 a          179 c          242 g          665 t
ORIGIN      
        1 tttcatacaa aatgttattt tgtatgaact attttggcag gtgcaagaac tggttaatca
       61 tcctgaaaaa ttatctttta tgaatcaagc taaaattcat aaatatcttg atttgcttga
      121 tcaagttttt tgttttattg ataagcagag tataataaaa tttaatttta atcctttttt
      181 atttttacac aaaatgggat ttttacattg ttttaaaaaa gaaaaagtac ctatagataa
      241 agtttttatt gaacaaatag atgataaaaa tgatgaaatt ttgattaaat tttatactgc
      301 agatattaat gatgaagtta aaatgctttt tgatgataag tctgctaaaa tcatttgttc
      361 aaaaatcaga caatatgatt ttttaaaccg agtttttatt tatgaaagaa gaatttggtt
      421 taaatttttt ataaatgcta aaaatatgat ttgttttatt aacgataaaa atgttggcat
      481 aatctatcaa gaaaaaaagt gcacttttta tgatgttttt tatgaaatta aaaaattaaa
      541 aaaaagaaga gccaagaata aatcattatg gctttttgct gatatgcctt ttagagctga
      601 tgataatgct gaacatttat atcgctatgt tatgaaaaat catcttaaac aaaatattgt
      661 ttttgttctt agaaaaaatt ctcatgatta taaaaggcta aaaaaagaag gttttaaact
      721 tgttgatcca aaaagtttta aatttaaata tttggttttt aaggctgata aacttatttc
      781 atcacatatt gataggtatt tttttgaagc tttgggggaa aatactttaa agactaaaga
      841 tttcatattt ttacaacatg ggatcacaaa agatgattta tcttcttggt tgaatcaaag
      901 aaaaattgat ttatttatta ctggaatgca agatgaatat gattctatag taggagattt
      961 taatcgttat aaatttactc caaaagaggt aaaattaaca ggatttccta gatgggatgc
     1021 tttgcttaaa aataataaaa taaatactaa acaaattctt attatgccta cttggagaga
     1081 atatatagta ggttcttata gtaaaaaatt aatgaaaaga agatttaatc caaaatttta
     1141 tgaaagtgag tatttttata gatggggttc ttttttacac agtaaaaaat tacaagaatt
     1201 acatgaaaaa tataattaca aaatagtttt taatcctcat ccacaaatta gaccttattt
     1261 ggaaggtttt gatttaccaa attatattat aacaccttct gttgaaataa gtatgcaaaa
     1321 gcttttttgt gaatcatctt taatgataac ggattattca agcgtggctt ttgagatggc
     1381 cgttttaaaa aagcccgtga tttattatca atttgataaa aatgaattat tttctaggca
     1441 tacatatact caaggttatt ttgattataa taaagatgga tttggaactg tagttttaga
     1501 tatagataat ctattatatg aattaaaaat gaagctacaa aaccatagtt ttaaaaataa
     1561 ttttttaatc cctaaggcaa attctttaga aaaagttaca caagtaattt tatccatcta
     1621 actccttaca cattttttca aattcttgat agtatttcca tgatgctact atatctgggc
     1681 gatgttgttt gatatgggtt aattcataac tcatcatttt ttgcaacttt cttcttctat
     1741 a
//
LOCUS       DBBXPZ010000141         1724 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.143, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000141 DBBXPZ010000000
VERSION     DBBXPZ010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1724)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1724)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1724
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.143"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..329
                     /locus_tag="ACJFD7_001747"
     CDS             <1..329
                     /locus_tag="ACJFD7_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860515.1"
                     /translation="KKYNGKDIKEYLTKEVALRIIQEEKLEVIWYDEALKPLCAGIKH
                     DKQRDKYISFITNAKAEIIEWKSIEFDGDRYSETFKEMLNDEFLALYALINRARMIKQ
                     NRISFV"
     gene            388..1482
                     /locus_tag="ACJFD7_001748"
     CDS             388..1482
                     /locus_tag="ACJFD7_001748"
                     /inference="COORDINATES: protein motif:HMM:NF025387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TNT domain-containing protein"
                     /protein_id="HGG0860516.1"
                     /translation="MAKKRTILIPRIEDINITPDTSCMHPILEDNTLVCLHGGRVKLK
                     AKKAKRIKSDNVSIMLDNEIQGASISGCLNPPILGGPCTKVAMVFAYTYSDHKVNNKH
                     SVLQMGLIGMSIKGYPIFAISKKNKIKFALAKIQASPLAKIKYDRIRWEGGGGKLKAA
                     QRRRREKSKEKAKMLLYLENENKKGKVSDKEVHLYKHNGIWPKDTPKPRSPDYIGENG
                     KIKYPDDDGYKIPPKPEEITLKKGMKLDRYGDNSGSFVCPFKEKKGAIPYEKRSLPYE
                     DNEAMQKTYKRYEVLEDINMEGIERKIEMSGNRELKGKIDKLKAKNKFHSPKIGKISP
                     YFEQEGGGTQIKLPISIENLIQLGFIKQIP"
     gene            1496..>1724
                     /locus_tag="ACJFD7_001749"
     CDS             1496..>1724
                     /locus_tag="ACJFD7_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860517.1"
                     /translation="MTREQAELIIEEEKLIDTDWYPSYKHSGEYHLTMWFDSDNNKYE
                     AVYIGERGSVELEYSFDSEKEAIDKMLQMNYE"
BASE COUNT          730 a          198 c          310 g          486 t
ORIGIN      
        1 aaaaaaaata caatggaaaa gacattaaag aatatctaac aaaagaagta gcactaagaa
       61 tcatccaaga agaaaaacta gaggtgattt ggtatgatga agcacttaaa cctttatgtg
      121 caggtattaa acacgataaa caaagagata aatatatttc ttttatcact aatgctaaag
      181 cagaaattat agaatggaaa agtattgaat ttgatgggga tagatacagt gaaaccttta
      241 aggaaatgct taacgatgaa tttctagccc tttatgctct tatcaatcgt gctagaatga
      301 ttaagcaaaa taggattagc tttgtgtaaa tactttcctt atgatttaat ttaatcttag
      361 cgagtttaaa aacccacaag acttttcatg gctaaaaaaa gaacaatcct tattcctaga
      421 atagaagata ttaatataac tcctgatact tcttgtatgc atcctatctt agaagataat
      481 actttagtat gcttacatgg aggtagagtt aagttaaaag caaaaaaagc taaaagaata
      541 aaatcagaca atgtttctat tatgcttgat aatgaaatac aaggagccag tataagtgga
      601 tgtttaaatc cacctatact aggaggacct tgtactaaag tagctatggt atttgcttat
      661 acttattcag atcataaagt taataataaa cattctgtgt tacaaatggg tttgatagga
      721 atgagtataa aaggttatcc tatatttgct atatccaaaa agaataagat taaatttgct
      781 ttagctaaaa tacaagctag tcctcttgct aagattaaat atgataggat aagatgggaa
      841 gggggaggag gtaaattaaa agcagcacaa agaaggagaa gagaaaaaag taaagagaaa
      901 gcaaaaatgc ttttatattt ggaaaatgaa aataaaaaag gtaaggtaag tgataaagaa
      961 gttcatcttt ataaacataa tggaatatgg cctaaagata ctccaaaacc tagaagtcct
     1021 gattatattg gtgaaaatgg taagattaaa tatcctgatg atgatggtta taaaattcca
     1081 cctaaaccag aagaaatcac tctaaaaaaa gggatgaaac tggacagata tggagataat
     1141 tcaggtagct ttgtttgtcc ttttaaagag aaaaaaggag caatacctta tgaaaaaaga
     1201 tcattgcctt atgaagataa tgaagccatg caaaaaacct ataaaagata tgaagtatta
     1261 gaagatatta atatggaagg tattgaaaga aagattgaaa tgagtgggaa tagagaacta
     1321 aaaggtaaaa ttgataaatt aaaagcaaaa aacaaattcc attccccaaa aataggtaaa
     1381 atatctccat attttgaaca agaaggtgga ggaacacaga ttaaacttcc tatttccata
     1441 gaaaacttaa tacaattagg ttttatcaaa caaataccat aataaaggat aaaaaatgac
     1501 aagagaacaa gcagaattaa ttatagaaga agaaaagttg attgatacag attggtatcc
     1561 ttcttataaa cattcaggag aataccatct tactatgtgg tttgattctg ataataataa
     1621 atacgaagct gtttatattg gagaaagggg aagtgttgaa cttgagtatt cttttgatag
     1681 tgaaaaagaa gctattgata aaatgttgca gatgaattat gaac
//
LOCUS       DBBXPZ010000142         1704 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.144, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000142 DBBXPZ010000000
VERSION     DBBXPZ010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1704)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.144"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(303..650)
                     /locus_tag="ACJFD7_001750"
     CDS             complement(303..650)
                     /locus_tag="ACJFD7_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860518.1"
                     /translation="MKKSILFASALLASSMLFADSLKLEGTIAQIYDNNKTLLIDSIY
                     GGQMAIKVLPNTEIEMDDCGIFGTDKDGTFKDLQVGNFLESKISYGIPATPNTQAIPV
                     ARKIEIQCYKKAY"
     gene            complement(749..1321)
                     /locus_tag="ACJFD7_001751"
     CDS             complement(749..1321)
                     /locus_tag="ACJFD7_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiX/YebB-like N1pC/P60 family cysteine
                     hydrolase"
                     /protein_id="HGG0860519.1"
                     /translation="MFYLNKILYFFLILFLLIGILGFFINSNPSNQIIKKPYLPFLEI
                     GDLVFRAGIGSESFLIENLSQSPYSHIAMVVKTSPTILIHATTDDDKNAKNQVILSSM
                     DDFLKLSHKIAIKRLKFDEKTKQKIVAKALEHLGRKFIISTDKDAFYCTTFLEQSINS
                     ITPFHLQYTLIKAPFNEGLYLFPQAFFENN"
     gene            complement(1305..1646)
                     /locus_tag="ACJFD7_001752"
     CDS             complement(1305..1646)
                     /locus_tag="ACJFD7_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4878 domain-containing protein"
                     /protein_id="HGG0860520.1"
                     /translation="MAYGSSNPEDLAKNFTKDLYSGDTKSVMSYIDLSEAKSDEEKTF
                     VSDKITQVVAENAAKAKRMGGVKDIQIEEKTINKDSAKIRVLVLFNNDNNQSSNVFLA
                     KKDRKWLVLLK"
BASE COUNT          613 a          216 c          230 g          645 t
ORIGIN      
        1 tttagaggtt aaaaaacctt ttttgaagta aatatctgta attgtataat caggattgct
       61 gtttttaata aatttattaa ataaaagttc gttagtgtat cctatataaa atatatgaat
      121 aataaaacct aatataaaac aaaaaacaat aaaaatccat tttttcatta tttgccttag
      181 atgaaaatat aagtgttatt ttataaattg cttgttaaaa aagagtttaa atttttattt
      241 aagagtaatg aagtagtttg ccgaagaatg atttttataa atcccttgtt aagggattta
      301 tattaataag cttttttata acattgaatt tcaatttttc tagctactgg aatagcctga
      361 gtatttggtg tagcaggtat tccataagaa attttacttt ctaaaaaatt tccaacctgt
      421 aaatctttaa aagttccatc tttatctgtt ccaaaaatac cacaatcatc catttctatt
      481 tcggtatttg gtagaacttt tatagccatt tgtccgccat aaatagagtc aataagcaag
      541 gttttattgt tatcataaat ttgtgcaata gtaccttcaa gttttagact atctgcaaaa
      601 agcattgagc tagctaaaag tgctgatgcg aataaaatac tttttttcat aattatttct
      661 ccttaatgta aagtgatgac attataaaat ttttaagtga agtgaatgtg aaattaaaaa
      721 tttttgactt tcataaaatt aatacgcttt aattattttc aaaaaaagct tgtggaaaaa
      781 gatataaacc ttcattaaaa ggagctttga ttagagtata ttgaagatga aatggggtaa
      841 tggagttaat agattgttct aaaaaagtag tgcagtaaaa agcatcttta tctgtactta
      901 tgataaattt tctgcctaaa tgttccaaag ctttagcaac tattttttgt ttggtttttt
      961 catcaaattt taatctttta atagcaattt tatgactcag ttttaaaaaa tcatccatag
     1021 agcttaagat aacttggttt ttagcatttt tgtcatcatc tgttgtagca tgtatgagta
     1081 tagttggaga agttttaact accatagcga tatgagaata agggctttga cttaaatttt
     1141 ctattaaaaa actttcactt cctattcctg cacgaaagac aagatcacct atttcaagaa
     1201 aaggtagata gggttttttg atgatttgat ttgaaggatt ggaatttata aagaaaccca
     1261 aaattccaat caataaaaat aaaattaaga aaaaatataa aattttattt aagtaaaaca
     1321 agccattttc tatctttttt agcaagaaaa acattgctgc tttgattatt atcattgtta
     1381 aataacacta aaactctgat tttagcagaa tctttattga ttgttttttc ttcaatttga
     1441 atatctttaa caccacccat tctttttgct ttggctgcat tttcagcaac aacttgagtg
     1501 attttatcac taacaaatgt tttttcttca tcgcttttag cttcgctaag atcaatgtaa
     1561 ctcataacag atttagtatc accactgtaa agatcttttg taaaattttt agctaaatct
     1621 tcaggatttg aagaaccata agccactaaa aaaaggcaac taaagccaag aaagaaagtt
     1681 taaaaaattt cattttttct tttg
//
LOCUS       DBBXPZ010000143         1671 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.145, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000143 DBBXPZ010000000
VERSION     DBBXPZ010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1671)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1671)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1671
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.145"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..393
                     /locus_tag="ACJFD7_001753"
     CDS             <1..393
                     /locus_tag="ACJFD7_001753"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="Replicative helicase"
                     /protein_id="HGG0860521.1"
                     /translation="QVIDKLDFKEFENIKSQINETSCNPSKIISQKNANIKNNSFVDL
                     TQWAIRSVDLEKIEFTSLIDDFLDKGSISFLTSEANKGKTFLSFAICKHLLEFNKIRK
                     IIYFDGDNSKITIKSRIKKSMQIGGYYF"
     gene            501..809
                     /locus_tag="ACJFD7_001754"
     CDS             501..809
                     /locus_tag="ACJFD7_001754"
                     /inference="COORDINATES: protein motif:HMM:NF024872.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HGG0860522.1"
                     /translation="MQSGGLVNVFIVFDSLFNFFNGDMNDNKKVAEFMKIIKKISHKG
                     EATFLFIHHKGKSAENEFMGGVNFLNATDNLFKIQTSNNDGEILNIELNTKKARNFLP
                     "
     gene            931..1146
                     /locus_tag="ACJFD7_001755"
     CDS             931..1146
                     /locus_tag="ACJFD7_001755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860523.1"
                     /translation="MQGELLELLEKSKTDTHAIKKLESGKGLYFNIIEKSRATGGKAL
                     KYYVPLKENKTIINGIEINVEQTLFSK"
     gene            complement(1400..1606)
                     /locus_tag="ACJFD7_001756"
     CDS             complement(1400..1606)
                     /locus_tag="ACJFD7_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002899137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HGG0860524.1"
                     /translation="MTNNDFESILKKCNLSKKEFATLCDLPYPTLMNWVKADKTPNWV
                     KSWLENYIKAQKYNKIKDLIKDDL"
BASE COUNT          678 a          188 c          255 g          550 t
ORIGIN      
        1 caagttatag ataaacttga ctttaaagaa tttgaaaata ttaaaagtca aataaatgaa
       61 acaagttgca accctagtaa aattatatca caaaaaaatg caaatataaa aaataattct
      121 tttgtagatt taacacaatg ggctataaga agcgttgatt tagaaaaaat agaatttaca
      181 tctttaatcg atgatttttt ggataaagga agtattagtt ttttaacaag tgaagctaat
      241 aagggtaaaa cttttttaag ttttgctatt tgcaagcatt tattagaatt taacaagatt
      301 agaaaaatta tttattttga tggtgataat agcaaaataa ccattaaaag caggattaaa
      361 aaaagtatgc aaataggggg atattatttt tagattatcc tgcttttaat tatatacaaa
      421 caagcaatgc tttagagtgt ggaactgatg agatagaagt tgattttaac tttattgttg
      481 aaaaatatct agaaccttta atgcaaagcg gtggtttggt taatgttttt atcgtatttg
      541 atagcctttt taactttttt aatggtgata tgaatgataa taaaaaagta gctgaattta
      601 tgaaaataat taaaaaaata agtcataaag gcgaagctac ttttttattt atacatcaca
      661 agggaaagag tgctgaaaat gagttcatgg gtggggttaa tttcttaaat gcgaccgata
      721 acctttttaa aatacaaaca agtaataacg atggagaaat tttaaatata gaattaaata
      781 caaaaaaggc aagaaatttt ttaccttaat aatttaaagg tagatataga cttaaatacg
      841 cttgatttaa aaatagaaag agcaataaat gaaaacgata caaactttct tacaaaagct
      901 aaagaaatca tagaacaaaa aggcgagatt ttgcaagggg agttattaga gcttttagaa
      961 aaatcaaaaa ccgatacaca tgccattaaa aagctagaaa gtggaaaagg gttatatttt
     1021 aatataatag aaaaatcaag agcaacgggt ggaaaagctt taaaatatta tgtgccttta
     1081 aaagagaata aaaccatcat taacggcata gaaataaatg tcgagcaaac tttatttagc
     1141 aaataagtaa aaagctatgt gagtttaatt catacagctt tttacttaat tattatctta
     1201 tagccatagc ttaataaaaa cactcctaaa atcaaaaaag tatttttacc gataaacacc
     1261 ttagacaaaa aataaaaacg cttaaaatcg cttattttaa tttagtattt tttataaaaa
     1321 gtggttgaag ggggtgtctt caaatttgaa gacacctagc aattagcact gctcaatttt
     1381 gagcacacat catcaaaact tacaaatcat cttttattaa gtctttaatc ttattgtatt
     1441 tttgagcttt gatatagttt tcaagccaag atttaaccca gttaggcgtt ttatcggctt
     1501 taacccaatt catcaaagta ggatagggca agtcgcaaag agtagcaaac tcttttttag
     1561 ataggttgca tttttttaaa atgctttcaa aatcgttatt agtcataatt aagcctttat
     1621 attaatttaa tagctatatt gtagcatata gcattaaaat aatactttaa t
//
LOCUS       DBBXPZ010000144         1587 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.146, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000144 DBBXPZ010000000
VERSION     DBBXPZ010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1587)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1587)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1587
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.146"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..731)
                     /locus_tag="ACJFD7_001757"
     CDS             complement(<1..731)
                     /locus_tag="ACJFD7_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2,3-sialyltransferase"
                     /protein_id="HGG0860525.1"
                     /translation="MKKVIIAGNGPSLKEIDYSRLPNDFDVFRCNQFYFEDKYYLGKK
                     CKAVFYTPGFFFEQYYTLKHLIQNREYETELIMCSNYNQAHLENENFVKTFYDYFPDA
                     HLGYDFFKQLKEFNAYFKFHEIYFNQRITSGVYMYAVAIALGYKEIYLSGIDFYQNGS
                     SYAFDTKQENLLKLAPDFKNDRSHYIGHSKNTDIKALEFLEKTYKIKLYCLCPNSLLA
                     NFIELAPNLNSNFIIQEKNNYTKDIL"
     gene            820..>1587
                     /locus_tag="ACJFD7_001758"
     CDS             820..>1587
                     /locus_tag="ACJFD7_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002924067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HGG0860526.1"
                     /translation="MFKISIILPTYNVEQYIARAIESCINQTFKDIEIIVVDDCGNDN
                     SINIAKEYSKKDKRIKIIHNEKNLGLLRARYEGVKVANSPYIMFLDPDDYLELNACEE
                     CIKILDEQDEVDLVFFNAIVESNVISYKKFDFNSGFYSKKEFVKKIIAKKNLYWTMWG
                     KLIRKKLYLEAFASLRLEKDVKINMAEDVLLYYPMLSQAQKIAYMNCNLYHYVPNNNS
                     ICNTKNEVLVKNNIQELQLVLNYLRQNYILNKYCSVLY"
BASE COUNT          595 a          169 c          242 g          581 t
ORIGIN      
        1 agtatatctt tagtgtagtt atttttttct tgtatgataa aatttgaatt taaatttggc
       61 gctagttcta taaaatttgc taaaagactg ttaggacata agcaatatag ttttattttg
      121 taagtttttt ctagaaattc taaagctttt atatctgtat ttttactatg tccgatatag
      181 tgtgagcgat catttttaaa atcaggggct agttttaaaa gattttcttg tttggtatca
      241 aaagcataag atgacccatt ttgataaaaa tcaattcccg aaagataaat ttctttgtat
      301 cctagggcta tggctactgc atacatatag acccctgagg taattctttg attgaaataa
      361 atttcgtgaa atttaaaata agcattaaat tctttaagtt gtttaaaaaa atcatatccc
      421 aaatgagcat caggaaaata atcgtaaaaa gtttttacaa aattttcatt ttctagatga
      481 gcttggttgt aattagaaca cataattagt tcggtctcat attctcgatt ttggattaaa
      541 tgttttaaag tgtagtattg ctcaaagaag aaaccagggg tgtaaaacac tgctttgcat
      601 tttttaccaa gatagtattt atcttcaaaa taaaattgat tacatctaaa tacatcaaaa
      661 tcatttggta gccttgaata atcaatttct tttaaacttg gtccatttcc agcaataata
      721 acttttttca tgattatttt ccatcaagat ttatttttaa cgattttatc aaaatagatt
      781 ttatgttata attaaattat aataaaataa ggaataaata tgtttaaaat ttcaatcatc
      841 ttaccaactt ataatgtgga acaatatata gcaagggcaa tagaaagctg tatcaatcag
      901 acttttaaag atatagaaat aattgtagtt gatgattgtg gaaatgataa tagtataaat
      961 atagccaaag aatactctaa aaaagacaaa agaataaaaa taatccacaa tgaaaaaaac
     1021 ttaggtcttt taagagcaag atatgaaggt gtgaaagtag caaactctcc ttatataatg
     1081 tttttagatc ctgatgatta tttggaacta aatgcttgtg aagagtgtat aaaaatttta
     1141 gatgaacagg atgaagttga tttagtgttt ttcaatgcta ttgttgaaag taatgttatt
     1201 tcatataaaa agtttgactt taattctggt ttttatagca aaaaagagtt tgtaaaaaaa
     1261 attattgcaa agaaaaattt atattggact atgtggggga aacttataag aaagaaattg
     1321 tatttagaag cttttgcgag tttaagactc gagaaagatg ttaaaatcaa tatggctgaa
     1381 gatgtattgt tatattatcc aatgttaagt caagctcaaa aaatagcata tatgaactgt
     1441 aatttatatc attacgtgcc taataataat tcaatttgta atactaagaa tgaagtgctt
     1501 gttaaaaata atattcaaga gttgcagttg gttttaaact atttaaggca aaattatatt
     1561 ttaaacaagt attgtagcgt tctctat
//
LOCUS       DBBXPZ010000145         1537 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.147, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000145 DBBXPZ010000000
VERSION     DBBXPZ010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1537)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1537)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1537
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.147"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            52..1476
                     /locus_tag="ACJFD7_001759"
     CDS             52..1476
                     /locus_tag="ACJFD7_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HGG0860527.1"
                     /translation="MDFLTSLSEGGQFAIQIIIVLICLFYGAKKGGIALGLLGGIGIL
                     MLVFAFHIKPGKPAIDVMLTILAVVVASATLQASGGLDVMLQIAERILRRNPKFLTIL
                     APFVTCFLTILCGTGHVVYTIMPIIYDIAIKNGIRPERPMAAASISSQMGIIASPVSV
                     AVVSLTALLLNANHKLAGFDGYINLLQITIPSTLFGVLCIGIFSWFRGKDLDKDEVFQ
                     EKLKDPEFKKYVYGDSKTLLGVKLPKSNWVAMWIFLGAIALVALLGVFDFLRPNWGQV
                     VKNGIPQVDALGNPKMDVLSMVSVIQMFMLLAGSLIIIFTKTDAKKIGSNEIFKSGMI
                     ALVAVFGISWMADTMFAVHTPMMKAALGDIVKEHPWTYAIMLLLISKFVNSQAAAISA
                     FVPLALGIGVEPGVIVAFAAACYGYYILPTYPSDLATIQFDRSGTTHIGKFVINHSFI
                     LPGLIGVITSCIAGYFIAMAAGYL"
BASE COUNT          431 a          220 c          302 g          584 t
ORIGIN      
        1 atgtgataca ataataactg tttttaaata ttaattttca aaggagttaa aatggacttt
       61 ttaacaagcc ttagtgaggg agggcaattt gcaatccaaa tcattatcgt tttaatttgt
      121 cttttttacg gtgcaaaaaa aggcggcata gcgcttggtt tacttggtgg tataggtatt
      181 ttaatgcttg tatttgcttt tcatataaag cctggaaaac cagccataga tgttatgctt
      241 acaattttag cggtagtggt tgcgagtgca actttgcaag caagcggtgg tttggatgtt
      301 atgcttcaaa tagcagaaag aattttaaga cgcaatccta agtttttaac aatattagcg
      361 ccttttgtaa cctgcttttt gactatactt tgtggaacag gacatgtggt ttatactatt
      421 atgcctatta tttatgatat agcgattaaa aacggtattc gtcctgagcg tccaatggcg
      481 gcagcttcta tatcgtcaca aatgggtatt attgcatctc ctgtatctgt ggctgttgtg
      541 agtttgactg ctttgctttt aaatgctaat cataaattag caggttttga tggttatatt
      601 aatcttcttc aaattaccat acctagtaca ttatttggtg tattgtgtat aggaattttt
      661 tcttggttta gaggaaaaga tttggataaa gatgaagtat ttcaagaaaa acttaaagat
      721 cctgaattta aaaaatatgt ttatggggat tctaaaacac ttttaggcgt taaacttcca
      781 aaaagcaatt gggttgcaat gtggattttc ttaggagcta ttgctttagt agctttatta
      841 ggtgtatttg atttcttgcg tccaaactgg gggcaagttg taaaaaatgg cattcctcaa
      901 gtagatgctt taggcaatcc taaaatggat gttttatcca tggtttcagt tattcagatg
      961 tttatgcttt tagcaggttc tttgattatc atctttacta aaacagatgc aaagaaaatc
     1021 ggctctaatg aaatttttaa atcaggtatg atagcacttg ttgcggtttt tggaatttct
     1081 tggatggctg atactatgtt tgcagttcac actcctatga tgaaagcagc gcttggagat
     1141 atagtaaaag aacatccttg gacttatgct ataatgcttc ttttaatttc aaaatttgta
     1201 aactctcaag cagcggctat ttcagctttt gttcctttgg ctttaggaat tggtgttgaa
     1261 cctggtgtga ttgttgcttt tgcggctgct tgttatggat attatatttt accaacttat
     1321 ccaagcgatt tggctactat acaatttgac agatcaggta ctactcacat cggtaaattt
     1381 gttatcaatc atagttttat tttaccaggt cttataggtg taatcacttc ttgtatagca
     1441 ggatatttta tcgctatggc agcgggttat ctttaacaat ttttagcagg atttttcctg
     1501 ctaaattctt tatttgtctt tttatttaat atagata
//
LOCUS       DBBXPZ010000146         1440 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.148, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000146 DBBXPZ010000000
VERSION     DBBXPZ010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1440)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1440)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1440
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.148"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..>1440
                     /locus_tag="ACJFD7_001760"
     CDS             <1..>1440
                     /locus_tag="ACJFD7_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860528.1"
                     /translation="KIQLTLDTLFNTLLKNITQSNDDEYKQIIRAIAKFFINILDSVT
                     NLKKPVSLVKKNPYVFVVNTLFEAYNSSAEYQEYKEQKYYYDFAYPLLELITSKLYPI
                     IALCNEEILSDVLIIDDKVLLDFSSYSNVPSISLYKNSFYKVILDEEFQGIFDNFLEN
                     NLKFENEKLDNTLLVNSSLNNFDTTLKKAINLNISKLNHFFYAEYPDLNSSMLVEMIL
                     DKKNTDQINTTKMGKNYLLITNPPQLNNAGLCEDLYQKKLGAIIKNRPKALTKNEKLG
                     LKEQFPSKRDYGSYFIERDVKKEDDFVLQLCPFVKLDGQIYQKYKEYFNFYNQTYSWV
                     KLYLLEYINERLEYEKVKQDFAYIDSFFKLPKELEEISEKEKEKVKEYVELFNDYLDN
                     INSCYDQIQFFLELDSSISKTYENVDFRKYSPLTVVLLTLTLYVLQKDLAFTQEYSLG
                     VKNIVIPNPDYGDKEISLNYQRIKIPNYF"
BASE COUNT          567 a          173 c          181 g          519 t
ORIGIN      
        1 caaagataca acttacccta gatacacttt ttaatacact tttaaaaaat attactcaat
       61 ctaatgatga tgaatataag caaattatta gagctatagc aaaatttttt atcaatatat
      121 tagattctgt aaccaatctt aaaaaacctg tctctttagt caaaaaaaat ccttatgttt
      181 ttgttgtaaa tacattattt gaagcttata attcttctgc tgagtatcaa gagtataagg
      241 aacaaaaata ttactatgat tttgcttatc cacttttaga gcttattact agtaagcttt
      301 atcctattat cgctttgtgc aatgaagaaa ttttatctga tgtattgatt atagatgata
      361 aagtattatt agatttttca tcttattcta atgtaccttc tattagtctt tataaaaata
      421 gtttttataa agttatttta gatgaagaat ttcaaggtat ttttgataat tttttagaaa
      481 ataatctaaa atttgaaaat gaaaagttag ataatacact tttagtgaat tctagtttaa
      541 ataattttga tacaacatta aaaaaagcaa tcaatttaaa tatctctaaa ctcaatcatt
      601 tcttttatgc agaatatcct gatttaaatt cttccatgct agtagaaatg atactagata
      661 aaaaaaatac tgatcaaatc aatacaacca aaatgggtaa aaattatttg cttattacta
      721 atccaccaca gcttaacaat gcaggacttt gtgaggactt gtatcaaaaa aaattaggag
      781 caataataaa aaatcgccca aaagctctta caaaaaatga aaaacttggg ttaaaagagc
      841 aatttcctag taaaagagat tatggctctt attttataga aagagatgtt aaaaaggaag
      901 atgattttgt attgcaactt tgtccttttg tgaaacttga tggacagatt tatcaaaaat
      961 ataaagagta ttttaatttt tataatcaaa catattcttg ggtcaaactt tatttattag
     1021 aatatataaa cgaacgatta gaatatgaaa aagttaagca agattttgct tatattgata
     1081 gcttttttaa attgcctaaa gaactggaag aaattagcga aaaagaaaaa gaaaaagtaa
     1141 aagaatatgt cgagcttttt aatgattatt tagacaatat caattcttgc tatgatcaaa
     1201 tacaattttt tcttgagtta gattcatcaa tatccaaaac atatgaaaat gtagatttta
     1261 ggaaatactc acccttaaca gttgttttat tgactttgac tttgtatgtt ttacaaaaag
     1321 acttagcttt tacgcaagaa tattctcttg gtgttaaaaa tattgtaatt ccaaatccag
     1381 attatggcga taaagaaatt tcacttaatt accaaaggat taaaatacca aattatttta
//
LOCUS       DBBXPZ010000147         1342 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.149, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000147 DBBXPZ010000000
VERSION     DBBXPZ010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1342
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.149"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            4..747
                     /locus_tag="ACJFD7_001761"
     CDS             4..747
                     /locus_tag="ACJFD7_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4261 domain-containing protein"
                     /protein_id="HGG0860529.1"
                     /translation="MTIDLNHNFTSFVLLDKVDFNFSELKSILEDKFNIKIADENFTK
                     EGVIFSYENMLVTLNLIKNPIPNHEAEYYANFNFMWKDVLEQTKKHKAHLLIAVLSQD
                     QSKLEQAKMFTKIAALCLDNKHALGFYTGAVVLEPSFYIENAKMLDDNRLPVYNWIYV
                     SVYPSENGVNAYTYGLRNFDKLELEVCDLNIEEKELFFCIYDIVLHILTYDINLKDKD
                     ILKFEDGKEIKFIKSQGISVENESLKIIF"
     gene            813..1229
                     /locus_tag="ACJFD7_001762"
     CDS             813..1229
                     /locus_tag="ACJFD7_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HGG0860530.1"
                     /translation="MKAKLTLLALLGTTVLLAKDMVVPASELPNNAKEFISKNFKTAQ
                     IGLVKKDIDSYDVILNDGTEIDFMINGEWKEVDGKYKALPHTILPNVMKKVSATQPNA
                     QILEVDKEINGYKFKFNNNMEVYTDMQGNILGQKLD"
BASE COUNT          513 a          146 c          214 g          469 t
ORIGIN      
        1 aacatgacta tagatttaaa tcacaatttt acctcttttg ttcttcttga taaagttgat
       61 tttaattttt cggagttaaa aagcatttta gaagataaat ttaatataaa aatagctgat
      121 gaaaatttta ccaaagaggg cgtgattttt tcatatgaaa atatgttagt tactctaaat
      181 ttgattaaaa atcctatacc taatcacgaa gcagaatact atgcaaattt taattttatg
      241 tggaaagatg tcttagagca aactaaaaaa cataaagctc atcttcttat agcggtgcta
      301 agtcaagatc aaagcaaatt agaacaagct aaaatgttta cgaaaattgc agctttatgt
      361 ttggataata aacatgcttt aggtttttat acaggtgcag ttgttttaga gcccagtttt
      421 tatatagaaa atgcaaaaat gttagatgat aatcgcttgc cggtatataa ttggatatat
      481 gttagtgttt atcctagtga aaatggagtt aatgcttata cttatgggct tagaaatttt
      541 gataaattag aacttgaagt ttgtgattta aacatagaag aaaaagaact tttcttttgt
      601 atttatgata ttgttttgca tattttaact tatgatatta atctaaaaga taaagatatt
      661 ttaaaatttg aagatggaaa agaaataaaa tttataaaaa gtcaaggtat aagtgttgag
      721 aatgaaagct tgaaaattat tttttaagtt tcacattcac ttcacagttt tgagttaaac
      781 tttcgccaac caagacaaaa aaaggagaaa ttatgaaagc aaaactaact ttacttgctt
      841 tgttgggtac tacggtgctt ttagctaaag atatggttgt tcctgctagc gaacttccaa
      901 ataatgccaa agaatttatt tctaaaaatt ttaaaaccgc tcaaattggt ttggtgaaaa
      961 aagatataga ttcttatgat gtgattttaa atgatggaac tgaaattgat tttatgatca
     1021 atggagagtg gaaagaagtt gatggaaaat ataaggcttt gccacatact atcttaccta
     1081 atgttatgaa aaaagtgagt gcaactcaac caaatgctca aattcttgaa gtagacaaag
     1141 aaattaatgg ttataaattt aagtttaata acaatatgga agtttataca gatatgcaag
     1201 gaaatatcct aggtcaaaaa ttagattaat ttttgaaaat ttaactccct tagaaaattt
     1261 gatgcaaaaa tttggaagca tagtcttcca aatttttatt ttttgattgc aaaacccaaa
     1321 atatatttag ttttaaaata at
//
LOCUS       DBBXPZ010000148         1160 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.150, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000148 DBBXPZ010000000
VERSION     DBBXPZ010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1160)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1160)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1160
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.150"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..187
                     /locus_tag="ACJFD7_001763"
     CDS             <1..187
                     /locus_tag="ACJFD7_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015016486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF115 domain-containing protein"
                     /protein_id="HGG0860531.1"
                     /translation="ILKAVMYERGLKISLVYKENIVDNASFITAYIKAYDEWLLYFIE
                     KLEQRINIIIDSFKELP"
     gene            184..>1160
                     /locus_tag="ACJFD7_001764"
     CDS             184..>1160
                     /locus_tag="ACJFD7_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-hydroxymethylpterin diphosphokinase MptE-like
                     protein"
                     /protein_id="HGG0860532.1"
                     /translation="MNLLEKNIQALLSGVNEPLGNKLLNFIQNKTCSRFNIDENLNIY
                     DKTHNVFMYENLEEEINFFYQSILEKTPRYPFICIYGTGNALLIKNLAKHYKHLFVFE
                     SEIELFILALSTIDLSEELCSGKIYLVDIEEERVDIQLLILFDMKDMFEYLSLYEMFV
                     NNVYYKKFYEDIWHKADELCEKNIKVVIRNLNSSLCIGFECYSHLLQNIPSMLESIPF
                     QRILSQRKNKFDNAIVVSAGPSLAKQLSLLKAYQDKAVIFCADGALSMLEKEGIIPDY
                     VTNLDFTDLAMKFFQNKENKTSLNVLSCATHLSLVHFLDNKSVVLRDDP"
BASE COUNT          427 a          132 c          186 g          415 t
ORIGIN      
        1 tattttaaaa gcagtgatgt atgagcgagg acttaagata agtttagttt ataaagaaaa
       61 tattgtagat aatgctagtt ttatcacagc ctatatcaag gcttatgatg aatggttgct
      121 ttattttata gaaaaactag agcaaagaat aaatattatc atcgattctt ttaaggaact
      181 tccatgaatt tgctagaaaa aaacatacaa gctttattaa gtggggtaaa tgaaccctta
      241 ggaaataaac ttttaaattt catacaaaat aaaacttgtt ctcgttttaa tatagatgaa
      301 aatttgaata tctatgataa aactcataat gttttcatgt atgaaaactt agaagaagaa
      361 ataaattttt tctatcaaag tattttagaa aaaactccta gatatccttt tatatgtatt
      421 tatggtacag gcaatgcttt actgattaaa aatttagcta aacactataa acatctgttt
      481 gtatttgaaa gtgaaataga actttttatt ctagctttaa gcacgataga tttgagtgaa
      541 gagctttgta gtggaaaaat ttatcttgtg gatatcgaag aagaaagagt agatattcaa
      601 ctgcttatac tttttgatat gaaagatatg tttgagtact taagtttata tgaaatgttt
      661 gtaaataatg tttattacaa aaagttttat gaagatattt ggcataaagc agatgaactt
      721 tgcgagaaaa atattaaagt tgtgataaga aatttaaatt ctagtttatg tatcggtttt
      781 gagtgttatt ctcatctttt acaaaacatc ccttctatgc ttgaaagcat tccttttcaa
      841 agaatcttaa gccaaagaaa aaacaaattt gataatgcta tagtagtttc tgcaggacca
      901 agcttagcca aacaactttc tttacttaaa gcttatcaag ataaagcagt gatattttgc
      961 gcggatgggg ctttgagcat gcttgaaaaa gaaggcataa tacctgatta tgttacgaat
     1021 ttagatttta ctgatctagc aatgaaattt tttcaaaata aagaaaataa aacttcttta
     1081 aatgtgcttt catgtgctac tcatcttagc ttggttcatt ttttagataa taaaagtgta
     1141 gttttaagag atgacccttt
//
LOCUS       DBBXPZ010000149         1152 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.151, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000149 DBBXPZ010000000
VERSION     DBBXPZ010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1152)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1152)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1152
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.151"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..220
                     /locus_tag="ACJFD7_001765"
     CDS             <1..220
                     /locus_tag="ACJFD7_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HGG0860533.1"
                     /translation="KEKLIKELENNPKNASFANIEKLLSWYGYKLVSIRGSHHKFKKD
                     NKSIIVPLHKPIKEFYVKQILKLLKDEK"
     gene            217..585
                     /locus_tag="ACJFD7_001766"
     CDS             217..585
                     /locus_tag="ACJFD7_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HGG0860534.1"
                     /translation="MKKDINYYLNLPYKINLVKLDDGDYFAQFDDKELNKLVLMAGDG
                     KTPNEAIEDLKNAFACYLEEALAKNEFIPEPIQKDKSKNLAITLKNSLVDEIDFYSKK
                     MGLSRSAFLAVSAKAYIKTL"
     gene            596..733
                     /locus_tag="ACJFD7_001767"
     CDS             596..733
                     /locus_tag="ACJFD7_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860535.1"
                     /translation="MNLILENVSDDLAKVIKAMAKIENTKVKLKKEKKLTINGFNLSL
                     F"
     gene            771..>1152
                     /locus_tag="ACJFD7_001768"
     CDS             771..>1152
                     /locus_tag="ACJFD7_001768"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860536.1"
                     /translation="MLPSFKADFEVAIKWEKERECQEAINDKIEPYYNIEIEKAKDEN
                     YLYDYLCNSWLENPLYFIFQSEECTILNNKIEEQKIALCDFLLNNDILFNSFKIFNKL
                     SPRERVKERENIIHNLSHFVKFSME"
BASE COUNT          509 a          111 c          182 g          350 t
ORIGIN      
        1 caaagaaaag ttaatcaaag aattagaaaa taaccccaaa aatgcaagtt ttgctaacat
       61 agaaaagctt ttaagttggt atggttataa actagttagc attaggggaa gtcatcataa
      121 atttaaaaaa gataataaaa gcattattgt gcctttgcat aaacctataa aagaatttta
      181 tgtaaagcaa atattaaaac ttttaaagga tgaaaaatga aaaaagatat aaattattat
      241 ttgaatttgc cttataagat taatttagta aaacttgatg atggcgatta tttcgcacaa
      301 tttgatgata aagaacttaa taaacttgtc ttaatggcag gagatggtaa aacaccaaac
      361 gaagcaatag aagatttaaa aaatgccttt gcttgttatt tagaagaagc tttggctaaa
      421 aatgagttta tcccagaacc catacaaaaa gacaaaagta aaaatctagc tattacctta
      481 aaaaatagtc ttgtagatga gatagatttt tattctaaaa aaatgggctt atcaagaagt
      541 gcatttctag cggtatcggc taaagcatat attaaaacac tttaaggggt taaaaatgaa
      601 cttgatttta gaaaatgtaa gcgatgattt ggcaaaagtc attaaagcaa tggcaaaaat
      661 agaaaataca aaagtaaagt taaaaaaaga aaagaaactt actattaatg gctttaattt
      721 aagtttattt taataagtgg ttaaatggga aaaagagagt aaaataagcg atgttaccaa
      781 gttttaaagc tgattttgaa gtggcgataa aatgggaaaa agaaagagaa tgtcaagaag
      841 ccattaatga taaaatagag ccatattata atatagaaat agaaaaagca aaagatgaaa
      901 actatttata tgattattta tgtaatagtt ggcttgaaaa tcctttatat tttatctttc
      961 aaagtgaaga atgcacaatt ttaaataata agatagaaga acaaaaaata gccttatgtg
     1021 attttttact taataatgat attcttttta atagctttaa gatttttaac aaattatccc
     1081 caagagaaag agtaaaagaa agagaaaata taatacataa tttatcacat tttgtaaaat
     1141 tttcaatgga aa
//
LOCUS       DBBXPZ010000150         1088 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.152, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000150 DBBXPZ010000000
VERSION     DBBXPZ010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1088)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1088)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1088
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.152"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..203)
                     /locus_tag="ACJFD7_001769"
     CDS             complement(<1..203)
                     /locus_tag="ACJFD7_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860537.1"
                     /translation="MVIFKNILLFLFFSTYLLAQEDFTPLEQCTYENEKFWIKILNLC
                     PEGNITCDKVVYVGVNKNNGKYIV"
     gene            complement(232..816)
                     /locus_tag="ACJFD7_001770"
     CDS             complement(232..816)
                     /locus_tag="ACJFD7_001770"
                     /inference="COORDINATES: protein motif:HMM:NF013152.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HGG0860538.1"
                     /translation="MVVNGVSENKIKENKDVNINNGTKYTNTTKSNNISSSENNTQEK
                     ITHLSNDGQNLLKNIEKLRLKPYNDQNGKEITSYVKGATIGYGHLIGQNEWDLYKNGI
                     TLQEADKLFKSDLLPFENAVKNSINSSLAQNEFDALVILCFNIGIDNFKNSFVAKIIN
                     AEKTGYKTLKEAWMAWNKSQNKVMQGLINRRNAE"
BASE COUNT          350 a          172 c          123 g          443 t
ORIGIN      
        1 acaatatatt ttccattatt tttattgaca cccacatata caaccttatc acaagttata
       61 ttaccctctg gacatagatt taaaattttt atccaaaact tttcattttc ataggtacat
      121 tgctctagtg gagtaaaatc ctcttgtgct aacaaataag tactaaaaaa taaaaacaat
      181 aatatatttt taaaaattac catttttcat aacctccttg agtgtaaagc tttattcagc
      241 atttctccta ttaattagtc cctgcattac tttattttga cttttgttcc atgccatcca
      301 agcttccttt aatgttttgt aacccgtttt ctctgcattg atgattttag caacaaaaga
      361 gtttttaaaa ttatcaatcc ctatattaaa acataatata accaaggcat caaattcatt
      421 ctgtgccaag gaagagttta ttgaattttt tacagcattt tcaaagggta acaaatcgct
      481 tttaaacaat ttatccgctt cttgtaaagt aataccattt ttatacaaat cccattcatt
      541 ttgccctata agatgtccat atccgatagt tgcaccttta acatatgaag taatttcttt
      601 tccattttga tcattataag gtttgagtct tagcttctct atatttttta aaagattttg
      661 accatcattg cttagatgag tgattttttc ttgagtattg ttttcactag aacttatatt
      721 attgcttttt gtagtgtttg tgtattttgt gccattattt atatttacat ctttattttc
      781 ttttattttg ttttcactaa ccccatttac caccacaaat ttaccaacat aaagctcttg
      841 ttttctatct tcatcttcta agatttcatc tagtcaaggt gatagaatga aaaaatataa
      901 aaagatttta gtgctattat caccaataat tttaattata ttattttata ccccttttta
      961 tatcctagct attgggaatt tagaaggtta tgtaaattaa ataattatcc aaaaagtgag
     1021 gaaaaatata atagaatctt agcttatttt tgataagagt ttagatggta gtataggaaa
     1081 aaatggtt
//
LOCUS       DBBXPZ010000151         1066 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.153, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000151 DBBXPZ010000000
VERSION     DBBXPZ010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1066)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1066)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1066
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.153"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..>1066)
                     /locus_tag="ACJFD7_001771"
     CDS             complement(<1..>1066)
                     /locus_tag="ACJFD7_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HGG0860539.1"
                     /translation="SFLAHSVAIVRSNFKGLLFTACIVIFAMYLSSAQSIKDTTHLAA
                     TAFAIIIGVLLSPWFFKYQHHFQAGVHFSAKKLLRLGIVLYGFNITLTELLSVGLKGF
                     LLSAIVIFFVFIIALFVGTKIFKLDKETSMLVGAGSAICGAAAVLALESSLKSDPFKG
                     ILAVGTVVIFGLVFMFLYPIAFSLNLFPFFDQNAMGVFMGATLHEVANVAGAAEMAKD
                     MAGFEQGASNVAVIIKMMRVILLVPFLLIVTYFFAKNQHSSSGKTAKSITIPYFAFAF
                     LGMIVLNTYLASKESILGIATSDIISLGKTLCTLCIVFAMAALGLQIDFKKFLKSGSR
                     VFGLAFVLGLVLIFGGYFLTL"
BASE COUNT          432 a          221 c          139 g          274 t
ORIGIN      
        1 ctaaggttaa aaaatatcct ccaaaaatca aaacaagccc taaaacaaaa gccaagccaa
       61 ataccctaga gccacttttt aaaaattttt taaagtcaat ttgcaagcct aaagctgcca
      121 tagcaaaaac gatacataaa gtacaaagtg ttttacctaa agagataata tcactcgtag
      181 caatacctaa aatactttct ttgcttgcta aataagtatt taaaactatc atgcctaaaa
      241 atgcaaaagc aaaataaggt atagtgatac tttttgcagt ttttccactg cttgaatgtt
      301 gatttttagc gaaaaaataa gtcactataa gcaaaaaagg cacaagtaaa atcactctca
      361 tcatttttat aatcactgca acattagaag caccttgctc aaatcctgcc atatcctttg
      421 ccatttcagc agcacctgcg acatttgcca cctcatgcaa agtagctccc ataaaaacac
      481 ccatagcatt ttgatcaaaa aaaggaaaaa gatttaaaga aaaagctatg ggatataaga
      541 acataaatac aagtccaaaa atcaccaccg tacctacagc taaaattccc ttaaaaggat
      601 cacttttcaa acttgactct agtgctaaaa ccgctgccgc accgcaaatc gcacttccag
      661 ctccaacaag catagaagtt tctttatcga gtttaaaaat tttcgttccc acaaataaag
      721 caataataaa aacaaaaaat atcactatag cagaaagcaa aaatcctttc aatcctacgc
      781 ttaaaagctc agttaaagtg atattaaaac catataaaac aatgccaagt cttaaaagtt
      841 ttttcgcact aaaatgcact ccggcttgaa aatgatgttg gtatttaaaa aaccaaggag
      901 aaagcaacac tcctatgata atagcaaaag cagtcgctgc taaatgagtg gtatctttga
      961 tactttgagc actagaaaga tacatagcaa aaatcactat acaagcagta aaaagcaaac
     1021 ccttaaaatt tgatcgcact atagccacgc tatgtgctaa aaaact
//
LOCUS       DBBXPZ010000152         1061 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.154, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000152 DBBXPZ010000000
VERSION     DBBXPZ010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1061)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1061)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1061
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.154"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..>1061)
                     /locus_tag="ACJFD7_001772"
     CDS             complement(<1..>1061)
                     /locus_tag="ACJFD7_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system domain-containing
                     protein"
                     /protein_id="HGG0860540.1"
                     /translation="QLKNNLDELQEFQLLEDEMSKYKTLNHENISWDKVYQYSQFILL
                     NHSLDFKICNYFLLSCFNLNNEECFEKLLLLFQHLKKLIDENNAYILAQKRKIQIFIQ
                     NFIQEYNKTKVLISSEIVNQFITLFSEFENLLSCNFAKIEIAQVASQLPKSPVTQVSV
                     NIRSDNINSLNEREYKNFYQKLAFELLEEDENNLNIYALFTQAMWGKIRCLPECNNEK
                     ITKIRKPDADIIRILLSDKENDIEHIKCFMHELILNPFWIEGVQLFCDFLEKKKKNKQ
                     LDILIILTSDFISKFDTIELLRFQNGDFICKEEVYKYFVKSKENKKSFFSSKKTDKEH
                     TLQDFEQMLMNIDKENFNNS"
BASE COUNT          378 a          131 c          124 g          428 t
ORIGIN      
        1 gaattattaa aattttcttt atcaatattc atcagcattt gctcaaaatc ttgtagtgta
       61 tgttctttgt cagttttttt acttgaaaaa aaactttttt tattttcttt ggatttaaca
      121 aaatatttat aaacttcttc tttgcagata aaatcaccat tttgaaaacg gagaagctca
      181 atagtatcaa atttagaaat aaaatcactt gttaatatta taagaatgtc taattgttta
      241 ttttttttct ttttttctaa aaaatcacaa aagagttgta caccctctat ccaaaaagga
      301 tttaaaataa gttcatgcat aaaacattta atatgttcta tatcattttc tttatcagaa
      361 agtaatatgc gaattatatc tgcatcaggt tttcttattt tagtaatttt ttcattatta
      421 cattcaggca aacacctgat ttttccccac attgcttggg tgaataaagc gtagatattg
      481 agattatttt catcctcttc caaaagctca aatgcaagtt tttgataaaa atttttatat
      541 tctctctcgt ttaaagagtt aatattatcg cttctaatgt ttacagatac ttgagttaca
      601 ggagattttg gaagttgtga tgcaacttga gcaatttcaa tttttgcaaa attgcaagat
      661 agtaaatttt caaattcgga aaataaagta ataaattgat taacaatctc agatgatata
      721 agcacttttg ttttattgta ttcttgaata aaattttgaa taaaaatttg aatttttcgc
      781 ttttgagcta atatataagc attattttca tctataagtt tttttaaatg ttgaaaaaga
      841 agcaaaagct tttcaaagca ttcttcattg tttaaattaa aacacgataa aagaaaatag
      901 ttgcaaattt taaaatctaa agaatgattt aataatataa actgagaata ttgataaact
      961 ttatcccaag aaatattttc atggtttaaa gtcttatatt ttgacatctc atcttcaagt
     1021 aactgaaatt cttgtagttc atctaaatta tttttcaatt g
//
LOCUS       DBBXPZ010000153         1048 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.155, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000153 DBBXPZ010000000
VERSION     DBBXPZ010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1048)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1048)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1048
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.155"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            125..607
                     /locus_tag="ACJFD7_001773"
     CDS             125..607
                     /locus_tag="ACJFD7_001773"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860541.1"
                     /translation="MDNKQQINKLRDMAELAQASYGYFHYVDNKFDIKDEDKIVTFEN
                     VLDITYKNSKIIDERGFKIGKLDGDFSPLQAKQFFSRYDLLIHQPNTESSFSATLFYD
                     KQKDKFIAGFRGMETDNFIDLVQDITLSLNGNLQSSFLLEFLEQVNKIIKNKRKRIIF
                     "
     gene            616..744
                     /locus_tag="ACJFD7_001774"
     CDS             616..744
                     /locus_tag="ACJFD7_001774"
                     /inference="COORDINATES: protein motif:HMM:NF013890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860542.1"
                     /translation="MGGYLAQMALIYCDIKYKDKLSFSPNEVYTFNAPSVYGWNGS"
BASE COUNT          379 a          120 c          163 g          386 t
ORIGIN      
        1 aaaatatatt ttagaccaat atggaaaaac tatgcaccaa atatttatgg taatgagggt
       61 aatatggatt ttagattaaa gcttgacggt gaaatagatt gcagaagctt attaggagaa
      121 ttatatggat aataaacaac aaatcaataa actaagggac atggcagaac ttgcacaggc
      181 aagttatgga tattttcatt atgttgataa taaatttgat ataaaagatg aagataaaat
      241 tgttaccttt gaaaatgttt tagatattac ctataaaaac tctaaaatta ttgatgaaag
      301 aggatttaaa atcggcaaac tcgatggcga cttctcccca ctccaagcta aacaattctt
      361 ttctcgctat gatttattaa tccatcaacc aaatacagag tcaagctttt ctgctacttt
      421 gttttatgat aaacaaaaag ataaatttat agcgggattt agagggatgg aaactgataa
      481 ttttattgac ttggttcaag acataactct atctctcaat ggcaatcttc aatcttcttt
      541 tcttttagaa tttttagaac aagtaaataa aataatcaaa aacaaacgca aaagaattat
      601 attttaggac attcattggg tgggtattta gctcaaatgg ctttgatata ttgcgatatt
      661 aaatataaag acaaattatc ttttagccct aatgaagttt atacttttaa tgcccctagt
      721 gtttatggtt ggaatggttc ctagtgtagt tatattttaa tttttaaaaa agtagaataa
      781 ttttattaaa aatattaaaa aggaaaataa atgggtctat tgaaaaaaaa tatacattgc
      841 ttgggggggg gtattttggg gaattatttt tttgtttagt tctttatatg cttattttag
      901 tgatatagaa ttttttggtg atatgttaaa gattgcattt tttatatatt cttatccatt
      961 gttaccttac atatcatatt taacactaca agaaactatt aaatccaaaa atatttttct
     1021 ttatttttct ttatttcggg aggatttt
//
LOCUS       DBBXPZ010000154         1031 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.156, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000154 DBBXPZ010000000
VERSION     DBBXPZ010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.156"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..>1031
                     /locus_tag="ACJFD7_001775"
     CDS             <1..>1031
                     /locus_tag="ACJFD7_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098561 - methyl accepting chemotaxis
                     protein complex [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HGG0860543.1"
                     /translation="SKYLSPLAAIQTGLTSFFDFINYKTKNVSTIEVKSNDEFGQISN
                     AINENILATKRGLEQDNQAVKESVQTVSVVEGGNLTARITANPRNPQLIELKNVLNKL
                     LDVLQARVGSDMNAIHKIFEEYKSLDFRNKLENASGSVELTTNALGDEIVKMLKQSSD
                     FANALANESGKLQTAVQSLTTSSNSQAQSLEETAAALEEITSSMQNVSVKTSDVITQS
                     EEIKNVTGIIGDIADQINLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSE
                     IEANTNLLVQSINDMAESIKEQTAGITQINDSVAQIDQTTKDNVEIANESAIISSTVS
                     DIANNILED"
BASE COUNT          395 a          157 c          168 g          311 t
ORIGIN      
        1 tatcaaaata cctctcccca cttgcagcta tccaaacagg tttaacttca ttctttgatt
       61 ttatcaacta taaaacaaaa aatgtttcta ctatagaagt aaaaagcaat gatgaatttg
      121 gacaaatctc aaatgctatc aatgaaaaca ttcttgctac taaaagaggc ttagaacaag
      181 acaatcaagc cgttaaagaa tcagttcaaa ccgtatcagt tgtagaaggt ggtaatttaa
      241 cagcaagaat tactgctaat ccaagaaacc cacaacttat tgaacttaaa aatgttctaa
      301 ataaacttct tgatgtttta caagctagag taggttctga tatgaatgct attcataaaa
      361 tttttgaaga atacaaaagc ttagacttta gaaataaatt agaaaatgct agcggtagtg
      421 tagaattaac tactaatgct ttaggtgatg aaatagttaa aatgctaaaa caaagttcag
      481 actttgctaa tgccttagct aatgaaagtg gaaaattaca aactgctgtt caaagcttaa
      541 ccacttcttc aaattctcaa gctcaatctt tagaagaaac tgcagcagct ttagaagaga
      601 tcacttcttc tatgcaaaat gtttcagtta aaactagtga tgttatcact caatctgaag
      661 agattaaaaa tgttacaggt attataggtg atattgcaga tcaaatcaat cttttagctt
      721 taaatgcagc tattgaagca gctcgtgctg gagaacatgg tagaggcttt gcagtggtag
      781 ctgatgaagt tagaaagtta gctgaaagaa ctcaaaagtc tttatcagaa attgaagcta
      841 atactaattt acttgttcaa tctatcaatg atatggcaga aagtattaaa gaacaaactg
      901 caggtatcac tcaaatcaat gatagcgtag ctcaaattga tcaaactact aaagataatg
      961 ttgaaattgc taatgaatca gctattattt ctagtacagt aagtgatata gctaataata
     1021 tcttagaaga t
//
LOCUS       DBBXPZ010000155          991 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.157, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000155 DBBXPZ010000000
VERSION     DBBXPZ010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 991)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 991)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..991
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.157"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..356
                     /locus_tag="ACJFD7_001776"
     CDS             <1..356
                     /locus_tag="ACJFD7_001776"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HGG0860544.1"
                     /translation="ELNEEEKKVILNKGTEAPFSGKYNDFYEKGIYQCKQCGASLYKS
                     EDKFKSGCGWPSFDDEIKGAVKRIPDKDGIRTEIVCANCNGHLGHVFEGEGFSAKNVR
                     HCVNSISLEFVKTKD"
     gene            371..>991
                     /locus_tag="ACJFD7_001777"
     CDS             371..>991
                     /locus_tag="ACJFD7_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HGG0860545.1"
                     /translation="MGSELYLMFFAAITLLAILNPFGNLTQFLAMSDGLPLMLRKKLF
                     RTILYTAFTIVLVFLSSGPLFMNYIFRVSLDDLRVSGGLVLIIMAIKNLLFSTKIATK
                     DFSSYQDMDDKEILRQSLIPMAFPMLVGPGTLASVIVIAEDGGLDVALGGVMIAFIFM
                     FILFHFAATIEKIVGKLILHVFSRIAQVFIVAMGFKMIIVGLKDIFN"
BASE COUNT          307 a          103 c          196 g          385 t
ORIGIN      
        1 aagaattaaa tgaagaagaa aaaaaagtaa ttttaaataa aggaacagaa gctcctttta
       61 gtgggaaata taatgatttt tatgaaaaag gaatctatca atgcaagcaa tgtggagctt
      121 cgctttataa atccgaagat aaatttaaat caggttgtgg atggcctagc tttgatgatg
      181 aaataaaagg ggctgttaaa agaattcctg ataaagatgg gattagaacc gagattgtat
      241 gtgcaaattg caatggacat ttaggtcatg tttttgaagg agaaggattt tctgctaaaa
      301 atgtaagaca ttgtgtaaat tctatttctt tggaatttgt aaaaactaag gattgatagt
      361 gttttctagt atgggttctg agctttattt gatgtttttt gctgcaatta ctttacttgc
      421 tatattaaat ccttttggta atttaactca atttttggct atgagtgatg gattgccttt
      481 aatgcttcga aaaaaacttt ttagaactat tctctataca gcttttacta tagttttggt
      541 gtttttatca tcaggacctt tatttatgaa ctatattttt agagtttcat tggatgattt
      601 aagggtttct ggtggtttgg ttcttattat aatggctatt aaaaatttac ttttttcaac
      661 aaaaattgca actaaggatt ttagttctta tcaagatatg gatgataagg aaattttaag
      721 acagagttta atacctatgg catttcctat gcttgttggg cctggaactt tagctagcgt
      781 tattgttata gccgaagatg gtgggcttga tgttgctctt ggcggagtaa tgatagcttt
      841 tatttttatg tttatacttt ttcattttgc agctactata gaaaaaatag ttggaaaatt
      901 gattttacat gttttttctc gtatagcaca agtatttatt gttgctatgg ggtttaagat
      961 gattattgta ggtttaaagg atatatttaa c
//
LOCUS       DBBXPZ010000156          953 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.158, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000156 DBBXPZ010000000
VERSION     DBBXPZ010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 953)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 953)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..953
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.158"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            8..>953
                     /locus_tag="ACJFD7_001778"
     CDS             8..>953
                     /locus_tag="ACJFD7_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,4-N-acetylgalactosaminyltransferase"
                     /protein_id="HGG0860546.1"
                     /translation="MLFQSYFVKIICLFIPFRKIRHKIKKTFLLKNIQRDKIDSYLPK
                     KTLAQINKYNNEDLIKLNKAIIGEEHKGYFNYDEKSKDPKSPLNPWAFIRVKNEAITL
                     KASLESILPAIQRGVIGYNDCTDGSEEIILEFCKQYPSFIPIKYPYEIQIQNPKSEEN
                     KLYSYYNYVASFIPKDEWLIKIDVDHIYDAKKLYKSFYIPKNKYDVVSYSRVDIHYFN
                     DNFFLCKDNNGNILKEPGDCLLINNYNLKWKEVLIDRINNNWKKATKQSFSSNIHSLE
                     QLKYKHRILFHTELNNYHFPFLKKHRAQDIYKYNWISIE"
BASE COUNT          406 a          118 c          116 g          313 t
ORIGIN      
        1 ttttaatatg ctatttcaat catactttgt gaaaataatt tgcttattca tcccttttag
       61 aaaaattaga cataaaataa aaaaaacatt tttactaaaa aacatacaac gagataaaat
      121 cgattcttat ctaccaaaaa aaactcttgc gcaaattaat aaatacaaca atgaagattt
      181 aattaaactt aataaagcta ttataggtga ggagcataaa ggatatttta attatgatga
      241 aaaatctaaa gatccaaaat ctcctttgaa tccttgggct tttatacgag taaaaaatga
      301 agctattacc ttaaaagctt ctcttgaaag tatattgcct gctatccaaa gaggtgttat
      361 aggatataat gattgtaccg atggaagtga agaaataatt ctagaatttt gcaaacaata
      421 tccttcattt ataccaataa aatatcctta tgaaattcaa attcaaaacc caaaatcaga
      481 agaaaataaa ctctatagct attataatta tgttgcaagt tttataccaa aagatgaatg
      541 gcttataaaa atagatgtgg atcatatcta tgatgctaaa aaactttata aaagcttcta
      601 tataccaaaa aacaaatatg atgtagttag ttattcaagg gttgatattc actattttaa
      661 tgataatttt tttctttgta aagataataa tggcaatata ttgaaagaac caggagattg
      721 cttgcttatc aataattata acttaaaatg gaaagaagta ttaattgaca gaatcaataa
      781 caattggaaa aaagcaacaa aacaaagttt ttcttcaaat atacactctt tagagcaatt
      841 aaagtataaa cacaggatat tatttcacac tgaattaaat aattatcatt ttcctttttt
      901 aaaaaaacat agagctcaag atatttataa atataattgg ataagtattg aag
//
LOCUS       DBBXPZ010000157          929 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.159, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000157 DBBXPZ010000000
VERSION     DBBXPZ010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 929)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 929)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..929
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.159"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..906)
                     /locus_tag="ACJFD7_001779"
     CDS             complement(<1..906)
                     /locus_tag="ACJFD7_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HGG0860547.1"
                     /translation="MKSVKLKVSLIANLIAVVCLIILGVVTFIFVKQAIFHEVVNAEI
                     NYVKTAKNSIESFKTRNSLALESLAKSILKHPIEQLDSQDALMHYVGKDLKNFRDAGR
                     FLAVYIAQPNGELVVSDPDSDAKNLDFGTYGKADNYDARTREYYIEAVKTNKLYITPS
                     YIDVTTNLPCFTYSIPLYKDGKFIGVLAVDILAADLQAEFENLPGRTFVFDEENKVFV
                     STDKTLLQQGYDISTIANLAKTKEDLEPFEYTRPKDGNERFAVCTKVSGIYTACVGEP
                     IEQIEAPVYKIAFIQTVIVVFASILS"
BASE COUNT          321 a          170 c          112 g          326 t
ORIGIN      
        1 gctaagaatg cttgcaaaaa caacaatcac agtttgtata aatgcaattt tataaactgg
       61 agcttctatt tgttctattg gctctccaac gcaagcagta taaattccag aaacctttgt
      121 gcatacagca aatctttcat taccatcttt tggtctagta tactcaaaag gttcaagatc
      181 ctctttagtt ttagcaagat ttgcaatagt actaatatca taaccttgtt gcaaaagagt
      241 tttgtctgta gaaacaaata ctttattttc ttcatcaaat acaaaagttc tacctggtaa
      301 attttcaaat tcagcttgca aatctgccgc aagaatatct acagccaaaa cccctataaa
      361 tttaccatct ttataaagcg gaatagaata tgtaaagcaa ggtaaatttg tagttacatc
      421 aatataagat ggggtaatat aaagtttatt tgttttaact gcttctatat aatactctct
      481 tgttctagca tcataattat cagcttttcc ataagttcca aaatctaaat ttttagcatc
      541 agagtctgga tcgcttacaa caagttcgcc atttggttga gcaatataaa ctgctaagaa
      601 tcttccagca tctctaaaat tctttaaatc ttttccaaca taatgcatta aagcatcttg
      661 actatctaac tgttctatag gatgctttaa aatactttta gctaaacttt caagagctaa
      721 agaatttctt gtcttaaaag actctataga atttttagcc gttttaacat aatttatttc
      781 agcattcaca acttcatgaa aaattgcttg ctttacaaat ataaatgtta caacacctaa
      841 aattatcaaa cacactactg cgattaaatt tgcaatcagt gaaaccttca attttacact
      901 tttcataatt taagcgctcc tttctaata
//
LOCUS       DBBXPZ010000158          928 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.160, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000158 DBBXPZ010000000
VERSION     DBBXPZ010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 928)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 928)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..928
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.160"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..382
                     /gene="perR"
                     /locus_tag="ACJFD7_001780"
     CDS             <1..382
                     /gene="perR"
                     /locus_tag="ACJFD7_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HGG0860548.1"
                     /translation="ELKATPQRLCVLKILKRHEHPNIDELYTEIKKEYPSISLATVYK
                     NLNTLQEQGLVVEINVLNQKTCYDIYEEEHIHVVCAKCGGIEDLSFKDAKLYEYQEHL
                     EKKIGNLVNHLSVCAYVDSCKKCH"
     gene            428..>928
                     /locus_tag="ACJFD7_001781"
     CDS             428..>928
                     /locus_tag="ACJFD7_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860549.1"
                     /translation="MVYEIQKNFLLSDCTLLENLKKDNIPFRNSKFETFYTQITSNHS
                     VKFQSFCNEFYKITKFNNSILEQNQEEKISKKKFEKARKKIIGKSIKKERFEFKFCSL
                     KSYIDIYEEPKICILKIFFPTLDSSNEFKIPKDFKIQKELHHDLNSKHIVLYGFEYQN
                     FDIEKYF"
BASE COUNT          378 a           98 c          122 g          330 t
ORIGIN      
        1 tgagttaaaa gctactccgc aaagactatg tgttttaaaa attttaaaaa gacatgagca
       61 tcctaatatt gatgaattat atacagaaat taaaaaagaa tacccttcaa tctctttagc
      121 gacggtttat aaaaatctta atactttaca agaacaaggt ttagttgttg aaatcaatgt
      181 tttaaatcaa aaaacttgtt acgatatcta tgaagaagaa catattcatg ttgtttgcgc
      241 caaatgtggt ggtatagagg atttaagttt taaagatgct aagctttatg aatatcaaga
      301 gcatttagaa aaaaagatag gcaatctcgt caatcatctg tctgtttgtg cttatgttga
      361 tagttgcaaa aagtgtcatt aagcaaaata aggttaaaat aacccatata ttttaagggt
      421 tattttaatg gtttatgaaa ttcaaaaaaa ctttttacta tctgattgca ctcttttaga
      481 gaatttaaaa aaagataata taccttttcg aaattctaaa tttgaaactt tttatactca
      541 aataacttca aatcatagtg ttaaatttca aagtttttgc aatgaatttt ataaaattac
      601 aaaatttaat aattcaattt tagaacagaa tcaagaagag aaaatttcta aaaaaaaatt
      661 tgaaaaagct cgaaaaaaga ttataggaaa gagtattaaa aaagaacgct tcgaatttaa
      721 attttgctct ttaaaaagtt atattgatat ttatgaagag cctaaaattt gtattttaaa
      781 aatatttttt ccaactttgg atagttccaa tgaatttaaa attcctaaag attttaaaat
      841 tcaaaaagaa ttacatcatg atttaaattc taaacatatc gttttatatg gttttgaata
      901 tcaaaatttt gatatagaga aatatttt
//
LOCUS       DBBXPZ010000159          926 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.161, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000159 DBBXPZ010000000
VERSION     DBBXPZ010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 926)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 926)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..926
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.161"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            177..407
                     /locus_tag="ACJFD7_001782"
     CDS             177..407
                     /locus_tag="ACJFD7_001782"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860550.1"
                     /translation="MQTITIKAKEQEINKLLDILKELNISYELESNNYKKALNDYESG
                     KSWQETKQELHKALNDYESGKAKLTPLGSEWL"
     gene            407..694
                     /locus_tag="ACJFD7_001783"
     CDS             407..694
                     /locus_tag="ACJFD7_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002926587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008657 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) inhibitor activity
                     [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_process: GO:0030541 - plasmid partitioning [Evidence
                     IEA];
                     GO_process: GO:0051290 - protein heterotetramerization
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HGG0860551.1"
                     /translation="MQILESDLFTNELNIILSFIVRKESIKVKNTFKNDLYKALKKLD
                     FMPYKFRKSLAFDDENVRDFIFKGYVIPYKIDKEKDLIIILGIYKENLPNF"
BASE COUNT          405 a           93 c          140 g          288 t
ORIGIN      
        1 gagctaatta gtgggggggg ggactaatgg gtagattaaa cctagggctt aaaagctacc
       61 taactttaac ttatatagat ttgtcaaagt attttaatta aatagctttt cttttaaagg
      121 cttataaaat aaaataagtt ataataacta aactttgaat cagtaaagga aaagctatgc
      181 aaaccataac aataaaagca aaagaacaag aaataaacaa gcttttagat attttaaaag
      241 agttaaatat cagttatgaa ctagaaagca acaactataa aaaggcttta aatgattatg
      301 aaagcggtaa aagttggcaa gaaacaaaac aagaactaca taaggcttta aatgattatg
      361 aaagcggtaa ggctaaatta acgccattag gcagtgagtg gctgtaatgc aaatcctaga
      421 aagcgattta tttacaaatg aattaaatat tattttatcc tttattgtga gaaaggaaag
      481 tataaaagtt aaaaacactt ttaaaaatga tttatacaag gctttaaaaa agcttgattt
      541 tatgccttat aagtttagaa agtctttagc ctttgatgat gagaatgtaa gagattttat
      601 atttaaaggt tatgtaatac cttacaaaat agacaaagaa aaagatttaa ttattatctt
      661 aggtatttat aaagaaaacc taccaaactt ttaaaaaatt actttttaag cttttgaaaa
      721 aatgagttta agtttcaagc taaaaaagct taaaaaaatg agaaaactta aataaaaaaa
      781 gcgtgaaaca ttctatttaa gctaaataaa cttaaatggc tttaaaaata ccttaatata
      841 atttttaata accctataaa atagggcttt aatgatgata taaataaata aagcttgaaa
      901 agtgtagttt tcaaatttga tttaag
//
LOCUS       DBBXPZ010000160          902 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.162, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000160 DBBXPZ010000000
VERSION     DBBXPZ010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 902)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 902)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..902
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.162"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..495)
                     /locus_tag="ACJFD7_001784"
     CDS             complement(<1..495)
                     /locus_tag="ACJFD7_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860552.1"
                     /translation="MNKIEIFLQNLNPREKFLFISFICLCALFLAFKIHDHFLEDIFQ
                     KTLVEHNYLALNEAKIENSHLKEIETKLTKQIKTEEEKLKYYKEKLHLFFYDKDFFNK
                     KINNLSKNLIINEIKFSQENKNFIHYNYVSLSLNGNFKDLLNFIQNLENLPIALKIDK
                     IKLYN"
     gene            complement(488..>902)
                     /locus_tag="ACJFD7_001785"
     CDS             complement(488..>902)
                     /locus_tag="ACJFD7_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860553.1"
                     /translation="FIEYKQNKEIQNKNFIIQEEISKLKQDKQKLLTNIQDLNFTLSN
                     KISSTQQQFHILSTITKEINLDKNKAIILNQIISWLNSNKLKITNLEFEQTKIILSFI
                     DENHFKRALENLNSAFKILDKNEETFNIILEVIHE"
BASE COUNT          294 a           73 c          120 g          415 t
ORIGIN      
        1 gttgtatagt tttattttat caatttttaa agctatagga agattttcta aattttgtat
       61 aaaattgagt aagtctttaa agttgccatt taaacttaga gaaacataat tatagtgaat
      121 aaaatttttg ttttcttggg aaaattttat ttcgttaatg attaaatttt tggataaatt
      181 attgattttt ttattgaaaa aatctttatc ataaaaaaat aaatgcaatt tttctttata
      241 gtattttaat ttttcttcct ctgtttttat ctgttttgtc agctttgtct ctatttcttt
      301 aagatgtgaa ttttctattt ttgcttcatt taatgcaagg taattatgtt ctactaatgt
      361 tttttgaaaa atatcttcca aaaagtgatc gtgaatttta aaagctaaaa acaaagcaca
      421 aaggcagata aaagaaataa aaagaaattt ttccctagga tttaaatttt gcaaaaatat
      481 ttctatttta ttcatgtatg acttctaata tgatattaaa tgtttcttca tttttatcaa
      541 gaattttaaa agcagaattt agattttcta atgctctttt aaagtggttt tcatcgataa
      601 aagaaagaat gatttttgtt tgttcaaatt caagatttgt gattttaagt ttattggaat
      661 taagccatga tatgatttga tttagaatga ttgccttatt tttgtctaaa ttgatttctt
      721 ttgttatggt ggataaaata tgaaattgtt gttgtgtaga tgatatttta ttggaaagag
      781 taaagtttaa atcttgtatg tttgttaata atttttgctt atcttgtttt agtttagaaa
      841 tttcttcttg tatgataaaa tttttatttt gaatttcctt attttgtttg tactctataa
      901 aa
//
LOCUS       DBBXPZ010000161          901 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.163, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000161 DBBXPZ010000000
VERSION     DBBXPZ010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 901)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 901)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..901
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.163"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..>901
                     /locus_tag="ACJFD7_001786"
     CDS             <1..>901
                     /locus_tag="ACJFD7_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HGG0860554.1"
                     /translation="KIKRKIMNSIKIKLSLIANLIAIFALIVLGIVSFYFTKTSLYES
                     TLKNQTDLLKVTQSTVEDFRSTNQSFTRALEKDIANLPYQSLITEENIINNVGPILKY
                     YRHSINALNVYLGLNNGKVLLSQKSNDAKMPELRDDLDIKTKDWYQEALKTNDIFVTP
                     AYLDTVLKQYVITYSKAIYKDGKIIGVLGVDIPSEDLQNLVAKTPGNTFLFDQKNKIF
                     AATNEALLDPSVDHSPVLNAYKAHGDNNFFSYKLNNEERLGACTKVFAYTACITESAD
                     IINKPIFKAAYIQVIALIVMISIS"
BASE COUNT          346 a          130 c          121 g          304 t
ORIGIN      
        1 aaaaattaaa aggaaaataa tgaatagtat taaaatcaaa ctttctctca ttgcaaattt
       61 aattgcaatt tttgccttaa ttgttctagg tattgtaagt ttttatttta caaaaacctc
      121 actatatgaa agcactctta aaaatcaaac tgatctactt aaagtcacac aatctaccgt
      181 tgaagatttc cgttccacaa atcaatcttt tactagagct ttagaaaaag atatcgcgaa
      241 cttaccttat caatctttaa tcactgaaga aaatattatt aacaatgttg gtccaatatt
      301 gaaatattat cgtcatagta taaatgcact aaatgtttat ttaggtttaa acaatggaaa
      361 agttttactt agtcaaaaat ctaatgatgc aaaaatgcct gaattacgtg atgatttaga
      421 tataaagaca aaagattggt atcaagaagc tttaaaaaca aatgatattt ttgttacacc
      481 agcatattta gatacagttt taaaacaata tgtaataacg tattctaaag ctatttataa
      541 agatggtaaa atcatagggg tactgggtgt cgatatacca tcagaagatt tgcaaaattt
      601 agttgcaaaa acccctggaa atactttttt atttgatcaa aaaaataaaa tatttgcagc
      661 aaccaacgaa gctttattag atccttcggt agatcattct cctgttttaa atgcatataa
      721 agctcatggt gataacaact tcttctctta taagctaaat aatgaagaaa gacttggagc
      781 ttgtactaaa gtctttgctt atacagcttg tattaccgaa agcgctgata ttataaataa
      841 acctatattt aaagcagcat atatacaagt tatagcctta attgttatga tatctattag
      901 c
//
LOCUS       DBBXPZ010000162          890 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.164, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000162 DBBXPZ010000000
VERSION     DBBXPZ010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 890)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 890)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..890
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.164"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            3..>890
                     /locus_tag="ACJFD7_001787"
     CDS             3..>890
                     /locus_tag="ACJFD7_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015016418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HGG0860555.1"
                     /translation="MKIKLSLIANSITIFALSILSIISFYFTKDSLYQSTLYTQTELL
                     KATQISIEDFRSRNISLLNTLEKDILNLPYEALNSQDNIVNNVGAILKYYRNSGNLLA
                     VYIGLDNGENIMSSDLSEKKNTNITINGKANNYNATTREWYKGARNSNQIYITPAYID
                     AFTNEYCITYSKALYKDGKFIGVLGIDVLLTSLQDQIARTPGNTFAFDNKDKIFAATN
                     EALLDPSVDHSPVLNAYKAHGDNNFFSYKLNNEERLGACTKVFAYTACITESADIINK
                     PIFKAAYIQVIALIVMISIS"
BASE COUNT          330 a          132 c          125 g          303 t
ORIGIN      
        1 atatcaaaat aaaactttcc ctcattgcaa attcaattac aatttttgct ttaagtattt
       61 tgagcatcat tagcttttac tttacaaaag attctttgta tcaaagtacg ctttatactc
      121 aaacagaact tcttaaagca acacaaattt ctatagagga ttttagatcc agaaatatat
      181 ctttacttaa tactcttgaa aaagatatat taaatttacc ctatgaagca ctaaattctc
      241 aagataacat agttaataat gtaggggcca tattaaaata ctaccgcaat agtggaaatt
      301 tgcttgctgt ttatattggt ttagataatg gtgaaaatat catgagtagt gatctaagcg
      361 agaaaaaaaa tactaatata actataaatg gaaaagccaa caactataat gcaactacta
      421 gggaatggta taaaggagct agaaatagta atcaaatcta tataacccca gcttatattg
      481 atgcttttac taatgaatac tgcattactt actctaaagc tctttataag gatggtaaat
      541 ttattggtgt tttaggaatt gatgttttat taactagttt acaagatcaa attgctagaa
      601 ctccaggcaa tacctttgct tttgataata aagataaaat atttgcagca accaacgaag
      661 ctttattaga tccttcggta gatcattctc ctgttttaaa tgcatataaa gctcatggtg
      721 ataacaactt cttctcttat aagctaaata atgaagaaag acttggagct tgtactaaag
      781 tctttgctta tacagcttgt attaccgaaa gcgctgatat tataaataaa cctatattta
      841 aagcagcata tatacaagtt atagccttaa ttgttatgat atctattagc
//
LOCUS       DBBXPZ010000163          827 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.165, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000163 DBBXPZ010000000
VERSION     DBBXPZ010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.165"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..241)
                     /locus_tag="ACJFD7_001788"
     CDS             complement(<1..241)
                     /locus_tag="ACJFD7_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HGG0860556.1"
                     /translation="MLINQTFEIDSCDDVELGIKRTSKLEYRISYDDEKDIKAIVFIV
                     GGFGANANISFLDFDREYIAKNFDVVVVHVFYHCFC"
     gene            complement(254..>827)
                     /locus_tag="ACJFD7_001789"
     CDS             complement(254..>827)
                     /locus_tag="ACJFD7_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015016477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HGG0860557.1"
                     /translation="DGVIDNSGTVLPLLECIIGKDLSRPEFFFSDLNKLVGMFIKTYW
                     TREDERLSYFFTNENYMIRSLLNSSHLTIQASVNKNIILVSYHSLKDPFNTAKDKQTL
                     FLAYKELGYDATLHLIKDESEIDGRFIKDLNHGMRITDKALFRKELPLMLEKLQKRKS
                     FMQENSISYPCGNKVFTFKDVENQLKLIIN"
BASE COUNT          301 a          139 c           82 g          305 t
ORIGIN      
        1 cacaaaaaca atgataaaaa acatgtacca ctacaacatc aaaattttta gcaatatatt
       61 ccctatcaaa atctaaaaaa gaaatatttg cattagctcc aaaaccaccc actataaaaa
      121 ctatggcttt gatatctttt tcatcatcat aacttatgcg atattcaagc ttactggttc
      181 ttttaatacc tagttctaca tcatcacaag aatcaatttc aaaggtttgg tttataagca
      241 tatattttcc tttttaatta ataatcaatt ttaactgatt ttctacatct ttaaaagtaa
      301 acactttatt tccacaagga taagagatgg aattttcttg catgaaagat tttctttttt
      361 gtagtttttc aagcattaaa ggaagttctt ttctaaataa ggctttatca gtaatcctca
      421 taccatgatt taaatctttt ataaatcttc catcaatctc actttcgtct tttattaaat
      481 gtaaagtggc gtcatatcct agctctttat acgctaaaaa aagagtttgt ttatcttttg
      541 ctgtattaaa tggatctttt aaactatgat aagatactaa aataatattt ttattgacac
      601 tagcttgtat agttaaatgg gaagaattta acaaagaacg aatcatataa ttttcattag
      661 taaaaaaata agataatctt tcatcttctc tagtccagta cgttttaata aacatgccta
      721 ccaatttatt taaatcacta aaaaaaaatt cgggtctact taaatctttt cctattatac
      781 attccaataa tggcaaaaca gttcctgaat tatcaatcac accatcc
//
LOCUS       DBBXPZ010000164          748 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.166, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000164 DBBXPZ010000000
VERSION     DBBXPZ010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 748)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.166"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..>748)
                     /locus_tag="ACJFD7_001790"
     CDS             complement(<1..>748)
                     /locus_tag="ACJFD7_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002904900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860558.1"
                     /translation="CIFECEIKDTRGLSSDIENGIFFLKCEFENKILFFNLYFKNISF
                     ILCNFKNNTTFQACTFKTFCNFESSVFENFVSFDKSMFLDKVSFYNTHFHKVPNFSQA
                     IFNENLNIVNTKLNFTFSNLEEKIEQECEEFNKNKKEEDQKSLDKFANDFRDSFRIFK
                     NALIKDNNLLDASNFHKYELYCKEIELKQNWDKKGENVKNTTDLEKNVSRIRDFVDFL
                     LLGFYRKLCDHHTDFLKVFNNLILLISLYI"
BASE COUNT          285 a          100 c           64 g          299 t
ORIGIN      
        1 aaaatatata aactaattag taatataaga ttattaaaaa cttttaaaaa gtctgtgtga
       61 tgatcgcaaa gttttctata aaatcctaaa agtaaaaaat ccacaaaatc ccgaattctc
      121 gaaacatttt tttctaaatc tgtcgtattt tttacattct cacctttttt atcccaattt
      181 tgttttagct ctatctcttt acaataaagc tcgtatttat gaaaatttga agcgtctaaa
      241 agattgttat cttttatcaa agcattttta aaaatcctaa aagaatctct aaaatcattt
      301 gcaaatttat ctaaggattt ttgatcttct tcttttttat ttttattaaa ctcttcacat
      361 tcttgttcga ttttttcttc taaattagaa aaagtaaaat ttaattttgt attaactata
      421 tttaaatttt cattgaaaat tgcttgtgaa aaatttggca ccttatgaaa atgtgtatta
      481 taaaaactaa ctttatctaa aaacatgctt ttatcaaaac ttacaaaatt ttcaaaaaca
      541 ctactttcaa aattacaaaa agttttaaat gtgcaagctt gaaaagttgt attattttta
      601 aaattgcaca agatgaaaga tatatttttg aaataaagat taaaaaaaag aattttattt
      661 tcaaattcgc atttcaaaaa aaatattcca ttttctatat ccgagcttaa gcctctagta
      721 tctttaattt cacattcaaa tatacatt
//
LOCUS       DBBXPZ010000165          746 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.167, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000165 DBBXPZ010000000
VERSION     DBBXPZ010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 746)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 746)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..746
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.167"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            80..>746
                     /locus_tag="ACJFD7_001791"
     CDS             80..>746
                     /locus_tag="ACJFD7_001791"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HGG0860559.1"
                     /translation="MNLWDKKAKTYARYQNTLNTIQKQTFEYLQNLNISFQNKSIIDI
                     GCGTGVWTLHLAKEAKEILALDSANTMLEILQEDAKKLNLNNIKCENLSFETWMQNNP
                     NVKFDLAFLSMSPALQNEKDYTNFLNLAKIKIYLGWADYRKSDFLDPIFKYFNTEFKG
                     FYKKDLENYLLEKNIFFHKIVFDETRKVQRTKEEAIENALWHLSMNKITTSKEAVSSF
                     VEND"
BASE COUNT          302 a           90 c          105 g          249 t
ORIGIN      
        1 taatcattca agccctttct ttgggcttga attttaaaaa tttatgctat gattttgtat
       61 attttatcaa ggaaaatata tgaatttatg ggataaaaag gccaaaactt acgcaagata
      121 tcaaaacact ttaaacacca tacaaaagca aacttttgaa tatttacaaa atttaaatat
      181 ttcttttcaa aataaaagca ttatagatat aggatgtgga actggggttt ggactttaca
      241 cttagctaaa gaagctaaag aaattttagc cctagatagt gcaaatacta tgcttgaaat
      301 tttacaagaa gatgctaaaa aactaaatct taacaatata aaatgcgaaa atttgagctt
      361 tgaaacttgg atgcaaaaca atcctaatgt taaatttgat cttgcatttt taagcatgtc
      421 ccctgctttg caaaatgaaa aagattatac aaatttctta aatctagcca aaataaaaat
      481 ttatcttggt tgggctgatt atagaaaaag tgatttttta gatccgattt ttaaatattt
      541 taatactgaa tttaaaggtt tttataaaaa agatttagaa aattatttac tagaaaaaaa
      601 tatatttttt cataagattg tttttgatga aacacgcaaa gtccaaagaa caaaagaaga
      661 ggctatagaa aatgctctat ggcatttaag catgaacaaa atcacaactt ctaaagaagc
      721 tgtaagttct tttgttgaaa atgata
//
LOCUS       DBBXPZ010000166          682 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.168, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000166 DBBXPZ010000000
VERSION     DBBXPZ010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 682)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.168"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            63..>682
                     /locus_tag="ACJFD7_001792"
     CDS             63..>682
                     /locus_tag="ACJFD7_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009882473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0814 family flagellar-dependent secreted
                     protein"
                     /protein_id="HGG0860560.1"
                     /translation="MSIFSINDNSNYGSMLSQAKANKESKENSKISFTNAFLKQNASK
                     LNEIQNANSQTLARSEVLNSANTTNTSNNTNFSISSKTSSPNYDISSEFKNSIYTLKY
                     KQADISTSTNTAYGYSVDKDGYMGSDFNKAAGLPEDFKIHKSTLDEIERKAENNSYTS
                     DIKKYLGIDKYYTNIDMAETIKQYYNLFSNALGQSFPNDKTSFSEA"
BASE COUNT          288 a           84 c           96 g          214 t
ORIGIN      
        1 ttgcttatat tattttagta tatttaggtt gaaggcagaa aaatctaaat taaggaatta
       61 atatgagtat ctttagtatc aatgataact caaactatgg ttctatgctt tcacaagcaa
      121 aagctaataa agaaagtaaa gaaaattcta aaataagttt tactaatgct tttttaaaac
      181 aaaatgctag taaattaaat gaaattcaaa atgcaaattc acaaactcta gcaagaagtg
      241 aagtattaaa ttctgctaat acaacaaata ctagcaataa tactaatttt agtataagta
      301 gtaagacaag ttctcctaat tatgatatat caagtgaatt taaaaactct atttatactc
      361 taaaatacaa acaagcagat ataagcactt ctaccaatac agcctatggt tatagtgtag
      421 ataaagatgg ctatatggga agtgatttta acaaagccgc aggacttcct gaagatttta
      481 agatacataa atctactttg gatgagatag agaggaaggc tgaaaataac tcttatactt
      541 cagatataaa aaaatattta ggtatagata aatattatac aaacatagat atggctgaaa
      601 ccataaaaca atactataat cttttttcta atgctttagg tcaaagtttt ccaaatgata
      661 aaacaagttt tagtgaagca ga
//
LOCUS       DBBXPZ010000167          679 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.169, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000167 DBBXPZ010000000
VERSION     DBBXPZ010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 679)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.169"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..>679
                     /gene="ung"
                     /locus_tag="ACJFD7_001793"
     CDS             <1..>679
                     /gene="ung"
                     /locus_tag="ACJFD7_001793"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HGG0860561.1"
                     /translation="ITINIDKIKINDDWKEFLRDEFQKKYFLEIKKQYLNAINQNIVI
                     YPPANLIFNAFNLCPLKEIKIIILGQDPYHQPNQAMGLSFSVPKNVKIPPSLNNIFKE
                     LQNDLNITPAKSGDLSSWAKQGVLLLNSILSVEANKAASHSSWGWQEFSDAIIHKLSN
                     EKSGLVFMLWGNYAKNKEILIDNTKHLILKAAHPSPLARTGFLGCKHFSKANEFLKKV
                     GKIPIDWK"
BASE COUNT          268 a           91 c          106 g          214 t
ORIGIN      
        1 attacaataa acatagataa gattaaaata aatgatgact ggaaagaatt tttaagagac
       61 gaatttcaaa aaaaatattt tctagaaatc aaaaaacaat acctaaatgc gattaatcaa
      121 aatatagtta tttatccgcc tgcaaattta atctttaatg cttttaattt atgtccttta
      181 aaagaaatta aaattattat cctaggacaa gatccttatc atcaaccaaa tcaagcaatg
      241 gggcttagtt tttcggttcc aaaaaatgta aaaatcccac caagtcttaa taatattttt
      301 aaagaattgc aaaatgattt aaacatcact ccagcaaaaa gcggagattt aagctcttgg
      361 gcaaaacaag gagttttgct cttaaattct attcttagcg ttgaagcaaa taaagcagct
      421 agccatagtt cgtggggttg gcaagaattt agtgatgcta taatacataa attaagtaat
      481 gaaaaatcag ggcttgtttt tatgctttgg ggaaattacg caaaaaacaa ggagattttg
      541 attgataata ctaagcattt gattttaaaa gcagctcacc caagtccttt agctagaaca
      601 ggatttttag gttgtaagca tttttcaaag gctaatgaat ttttaaaaaa agttggtaaa
      661 attcctatag attggaaaa
//
LOCUS       DBBXPZ010000168          628 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.170, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000168 DBBXPZ010000000
VERSION     DBBXPZ010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 628)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.170"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..>628)
                     /locus_tag="ACJFD7_001794"
     CDS             complement(<1..>628)
                     /locus_tag="ACJFD7_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HGG0860562.1"
                     /translation="KDCYKNILTIYLHQDECASPSDYSLGNFTIKTNLIKDKNENNVS
                     YYLKMDYIWIKEWIDECIKIYEEKSTKDQKFILDIQNIIFTLNQYKSILQWYMTDEYT
                     QRDDVLEFIFQNNIKMQNLKNAMILYRYNKNKSELKNLNEENYKKAKDIIQHKWSNIC
                     EYIIEEFFDSFEHKEIKIGDITFIGNKIEENRVNHGVFIFYPIDYKNE"
BASE COUNT          202 a           94 c           52 g          280 t
ORIGIN      
        1 ctttcattct tataatcaat aggataaaat ataaacacac catgattaac acgattttct
       61 tctattttat tgccgataaa agttatatca cctattttaa tttccttatg ttcaaagcta
      121 tcaaaaaatt cttctattat atattcgcag atgttgctcc atttatgctg gataatatct
      181 ttagctttct tatagttttc ttcatttaaa tttttaagct ctgatttgtt tttgttatat
      241 ctatataaaa tcatcgcatt ttttaaattt tgcattttta tattgttttg aaaaataaat
      301 tctagtacat catctctttg agtatactca tctgtcatat accattgtaa aatacttttg
      361 tattgattta gagtaaaaat aatgttttgt atatcaagaa taaatttttg atctttggtt
      421 gatttttctt catatatttt tatacactca tcaatccatt ccttaatcca tatataatcc
      481 atcttcaaat aatagctaac attattttca tttttatctt taatcaaatt tgtctttatt
      541 gtaaaatttc ccaaactata atcactagga ctagcacact catcttgatg caaatatata
      601 gtcaatatgt ttttataaca atctttta
//
LOCUS       DBBXPZ010000169          622 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.171, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000169 DBBXPZ010000000
VERSION     DBBXPZ010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 622)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.171"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..345)
                     /locus_tag="ACJFD7_001795"
     CDS             complement(<1..345)
                     /locus_tag="ACJFD7_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860563.1"
                     /translation="MGDSITLSIFWGLILFIASFTVARIYLIALSVLIVFSIINYWMR
                     INIKEFVKSYFLISFIIFFMAIVIVFYLTYDLETSRGLVLLGPPEIEKLSPQEYKAHN
                     YFGFLSGITIIFF"
     gene            complement(346..477)
                     /locus_tag="ACJFD7_001796"
     CDS             complement(346..477)
                     /locus_tag="ACJFD7_001796"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860564.1"
                     /translation="MKIFKDYQKFTPYGLDFKLYSKDFIAKLDFKNKAYNVLYNTGV"
BASE COUNT          272 a           88 c           67 g          195 t
ORIGIN      
        1 aaaaaaaata atagttatac cacttaaaaa tccaaaataa ttatgtgctt tatattcttg
       61 tggtgataat ttttcaattt ctggaggacc aagtaataca agccctctag aagtttcaag
      121 atcataagta agataaaata cgataacaat agccataaaa aagataataa aagatattaa
      181 aaaataagat tttacaaatt cttttatgtt aattctcatc caataattta taatagaaaa
      241 gacaataaga acgcttagag ctataagata aattcttgca acagtaaaac tagcaataaa
      301 caaaatcaaa ccccaaaaaa tagaaagtgt aatgctatct cccatttaaa ctcctgtatt
      361 ataaagcaca ttataagctt tatttttaaa atcaagttta gcaataaaat ctttactata
      421 aagtttaaag tccaaaccat aaggagtgaa tttttgatag tctttaaaga ttttcatata
      481 tcacataaac acttgagatc aatataggaa cattacacac aaaccctata aaccaactta
      541 attttttgcg tttttctcct gtgctataac atttaaataa ataagcttgc aataaacaag
      601 gaagtataaa aaatgtgatt at
//
LOCUS       DBBXPZ010000170          603 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.172, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000170 DBBXPZ010000000
VERSION     DBBXPZ010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 603)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.172"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            19..522
                     /gene="ctf"
                     /locus_tag="ACJFD7_001797"
     CDS             19..522
                     /gene="ctf"
                     /locus_tag="ACJFD7_001797"
                     /EC_number="1.16.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HGG0860565.1"
                     /translation="MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLF
                     AHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKSIN
                     TLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIKN
                     IALSRKK"
BASE COUNT          225 a           92 c          101 g          185 t
ORIGIN      
        1 tttaataagg agataagaat gctttctaaa gaagttgtaa aattactcaa tgaacaaata
       61 aacaaagaaa tgtatgcggc aaacttatat cttagtatga gttcttggtg ctatgaaaac
      121 agtcttgatg gagctggagc cttcttgttt gcacatgcaa gcgaagaaag cgatcatgct
      181 aaaaagctta tcacttatct taatgaaaca gattctcatg tagagcttca agaagtaaaa
      241 cagcctgaac aaaatttcaa atctttactt gatgtttttg aaaaaaccta tgaacatgag
      301 caatttatca caaaatcaat caatacttta gttgaacaca tgctaacaca taaagactat
      361 tctactttta atttcttaca gtggtatgta agcgaacaac acgaagaaga agcacttttc
      421 cgcggtatag ttgacaagat taagttaatc ggagaacacg gaaatggact ttatttagct
      481 gatcaataca tcaaaaatat tgcattaagc agaaaaaaat aatctttgcc ctactatggg
      541 caaatctcgc tttggattga aggtatgact tatttttctc tagaatttag tattttaatg
      601 ata
//
LOCUS       DBBXPZ010000171          569 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.173, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000171 DBBXPZ010000000
VERSION     DBBXPZ010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 569)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.173"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            28..474
                     /gene="tssJ"
                     /locus_tag="ACJFD7_001798"
     CDS             28..474
                     /gene="tssJ"
                     /locus_tag="ACJFD7_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system lipoprotein TssJ"
                     /protein_id="HGG0860566.1"
                     /translation="MFCKKNLFFLLPLFFCACSSVVSVKINNVENSNLNNRHDDVPVT
                     AIVYQLKDIKKFEEASDIDLATREEGVLGKDKLDSIKTQIAPKDNIIAVKVDEEEVPY
                     VGILVLFANNTKKTTKIWAKTEDANGFGKNKYLKFEISKEGIKRIK"
BASE COUNT          222 a           61 c          108 g          178 t
ORIGIN      
        1 ctaagataga aaggatactt tagtttcatg ttttgtaaaa aaaacttatt ttttttattg
       61 ccattattct tttgcgcttg ctcaagtgtt gttagcgtta agataaataa tgtagagaat
      121 tccaatctta ataatagaca tgatgatgtt cctgttacgg ctattgtata tcaacttaag
      181 gatattaaaa aatttgaaga agcaagtgat atagatttgg ctactagaga agagggggta
      241 ctaggcaagg ataaacttga ttctattaaa acgcaaattg cacctaaaga caatattatc
      301 gcggttaaag tagatgaaga agaggttcct tatgtaggca ttcttgtatt atttgcaaat
      361 aatacaaaaa aaacaacaaa aatatgggca aagaccgaag atgcaaatgg gtttgggaag
      421 aataagtatt taaaatttga aatatccaaa gaaggtatca aaagaattaa ataggaataa
      481 tatatggcaa ataaattaaa agttgcttgg tttgatggac ttaatattgg acaaacccat
      541 tttgagcagc aagaaagatt ttttaatag
//
LOCUS       DBBXPZ010000172          538 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.174, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000172 DBBXPZ010000000
VERSION     DBBXPZ010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 538)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.174"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..>538
                     /locus_tag="ACJFD7_001799"
     CDS             <1..>538
                     /locus_tag="ACJFD7_001799"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860567.1"
                     /translation="GHGTGTEALKVFLSYNKIIIPDNFFNYETGLQRYKYALNILLND
                     IDHIKGIRLKDYHFNDFEKFCKLIQKKCKFIFQVRDYFEIFTCYINHRTRKSDAIMNF
                     DLQTNLSDVFDRFYYFSSGENHPIRLNLKNFLSWPALHQEMGFRTCVMEYSMLQNFDN
                     ILDVLYIDIKDIIGVDTK"
BASE COUNT          209 a           51 c           75 g          203 t
ORIGIN      
        1 gtggacatgg aactgggact gaagcattaa aagtattttt atcttacaat aaaattatta
       61 ttccggataa tttttttaat tatgaaacag gattacaaag atataaatat gctcttaata
      121 tcttattaaa tgatattgat catataaaag gcatacgctt aaaagattat cattttaatg
      181 attttgaaaa attttgtaaa ttgattcaaa aaaaatgtaa atttattttt caagtaagag
      241 attattttga aatatttact tgctatataa atcatagaac tagaaaatct gacgcaatta
      301 tgaattttga tctacaaact aatttaagtg atgttttcga tcgtttttat tatttttcga
      361 gcggagaaaa tcatccaatt agattaaatc taaaaaattt tttatcttgg cctgcattac
      421 atcaagaaat gggatttaga acttgtgtaa tggagtattc gatgctacaa aattttgata
      481 atattttaga tgttctttat attgatataa aagatattat aggagtagac acaaaaaa
//
LOCUS       DBBXPZ010000173          526 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.175, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000173 DBBXPZ010000000
VERSION     DBBXPZ010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 526)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.175"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            <1..377
                     /locus_tag="ACJFD7_001800"
     CDS             <1..377
                     /locus_tag="ACJFD7_001800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860568.1"
                     /translation="EKMEKVDYCRMSCLDGKINAFKYLLDLFLSDLENENDVKTCNMF
                     ENDTSIEYVKDMLMMMLDKIKEIVIDQDNCHHNIDMYASVYHEIIKDELGKEFTPKEL
                     KELHKKQEERLLKELLEGSKKK"
BASE COUNT          231 a           53 c           86 g          156 t
ORIGIN      
        1 gagaaaaaat ggaaaaggta gattattgta gaatgagttg cctagatggc aaaataaacg
       61 cttttaaata tcttttagat ttatttttaa gtgatttgga aaacgaaaac gatgttaaaa
      121 cttgtaatat gtttgagaat gatacaagta tagagtatgt aaaagatatg cttatgatga
      181 tgcttgataa gataaaagaa attgttatcg accaagataa ttgtcatcac aatatagata
      241 tgtacgcaag tgtttatcat gaaattataa aagatgagtt aggtaaagaa tttaccccta
      301 aagagcttaa agaactgcat aagaaacaag aagagagatt attaaaagaa ttacttgaag
      361 ggagtaaaaa gaaataaaac aaggtagtaa gtttaacttg ctacccttac ctttaagggc
      421 aaaaatctat ttttaatctt ctaaattcaa atacaaataa accacgcaat aaaatcctta
      481 taaagtatat aaaaaagatg atgtaaataa aatttactcc atataa
//
LOCUS       DBBXPZ010000174          519 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.176, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000174 DBBXPZ010000000
VERSION     DBBXPZ010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 519)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.176"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
BASE COUNT          171 a           82 c           52 g          214 t
ORIGIN      
        1 tataagaaag gatacaaatg gctataaaaa ttgaaattag cggatttgat aaggattttt
       61 tacctgtttt tgagagttta gctaaaagct tatctcaaaa gcctatttta tcaatgtttt
      121 ttcttatttt ttgagcaaaa acttacgcat accctttttt cattttttgt ttctttaact
      181 tctcaaaaaa atttgtgcct cattaaaact tggaaataca ttattttttc ttcctgtgca
      241 acttttaaaa cgcacatttc cgtaaactct ctcaaccata tattcctcaa atagagtggt
      301 aataatttct atgctataat agcgaatgtt tcctttctca gttattctgt gcaacaaaac
      361 attattcata aaaaacctaa ttaaaaatta tttattttat tcaaaaaatc atttttaaac
      421 attttttcta tagcaagctt aatcatttga ttaattttct cattttcttt agctacatta
      481 gaaatttcat ctttgtaagc aggaatcatc atttctatc
//
LOCUS       DBBXPZ010000175          471 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.177, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000175 DBBXPZ010000000
VERSION     DBBXPZ010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 471)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 471)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.177"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            54..236
                     /locus_tag="ACJFD7_001801"
     CDS             54..236
                     /locus_tag="ACJFD7_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860569.1"
                     /translation="MKKVVLISALLGAFAANVFAANTPSDVNQTHTKAHHSKAKADKK
                     HEAKTHKKTKEQTPAQ"
     gene            complement(372..446)
                     /locus_tag="ACJFD7_001802"
     tRNA            complement(372..446)
                     /locus_tag="ACJFD7_001802"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(411..413),aa:Glu,seq:ttc)
BASE COUNT          204 a           76 c           66 g          125 t
ORIGIN      
        1 ttttaataat tacaattaat ttgcaactaa aaattattca taaggaggaa aatatgaaaa
       61 aagttgtact aatctcagca ttactaggtg ctttcgcagc taatgttttt gcagctaata
      121 ctccaagcga tgtaaatcaa acacatacaa aagctcatca ttcaaaagct aaagctgata
      181 aaaaacatga agctaaaact cacaaaaaaa caaaagagca aacaccagct caataatgcc
      241 cagccttgat ataagtctat aatagactta tatcaaaagc tattcgtatt ctacaaaata
      301 aattattaat atttattaaa tttcaataga aaaaatgaaa aaattgttat tttaaaagaa
      361 aaattaaaaa gtggtgaccc atacgagact cgaactcgtg ttaccgccgt gaaagggcga
      421 tgtcctaacc gctagacgaa tgggccactt ttaaggagta aaaaataaaa a
//
LOCUS       DBBXPZ010000176          456 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.178, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000176 DBBXPZ010000000
VERSION     DBBXPZ010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.178"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            34..>456
                     /locus_tag="ACJFD7_001803"
     CDS             34..>456
                     /locus_tag="ACJFD7_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002898740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HGG0860570.1"
                     /translation="MHNPNSAIERVKNHLAYKLGQAMIDFANSSSGGGYIALFKKLYK
                     IKKQHKKEQKIYQQTIQVFPQLKYPSLEACSDYEQALKYKFHLSYMLGEVLIKAYQNW
                     YKGAGFKLKNNIKKANKEFQIFREIFKEFDQINSSILEG"
BASE COUNT          194 a           53 c           66 g          143 t
ORIGIN      
        1 gtattaaaaa taaattttta caaggaatct tttatgcata atccaaactc agctatagaa
       61 agagtaaaaa atcatcttgc ttacaaacta ggtcaagcta tgattgattt tgcaaacagt
      121 agtagtgggg gggggtatat agcattattt aaaaaacttt ataaaattaa aaaacaacac
      181 aaaaaagaac aaaaaattta tcaacaaacc atacaagttt ttcctcaact caaatatcca
      241 agtttagaag catgtagtga ttatgagcaa gctttaaaat ataaatttca tttgtcttat
      301 atgctaggtg aagttttaat caaagcttat cagaattggt ataagggagc tggatttaaa
      361 ttaaaaaata atattaaaaa agcaaataaa gaatttcaaa tttttagaga aatttttaaa
      421 gaatttgatc agattaactc tagcatcctt gaaggt
//
LOCUS       DBBXPZ010000177          412 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.179, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000177 DBBXPZ010000000
VERSION     DBBXPZ010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 412)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 412)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..412
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.179"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..314)
                     /locus_tag="ACJFD7_001804"
     CDS             complement(<1..314)
                     /locus_tag="ACJFD7_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HGG0860571.1"
                     /translation="MEKFIERLLEEDIKFEKDVNNGLSDINIFDALNIETKENYHSKF
                     IAYLIDINKDHYQKNFAKVFLEKLGKSLVNTKFENLNIEDIKSVETEACIKDNRRIDI
                     LIT"
BASE COUNT          143 a           61 c           26 g          182 t
ORIGIN      
        1 gttattaaaa tatctatcct tctattatct tttatgcagg cttctgtttc tacgcttttt
       61 atatcttcta tgtttaaatt ttcaaatttc gtatttacta aactcttacc aagtttttct
      121 aaaaatacct ttgcaaaatt tttttgataa tgatccttat ttatatcaat taaataagct
      181 ataaatttag aatgataatt ttcttttgtt tcaatattca aagcatcaaa tatatttata
      241 tcactcaaac cattattcac atctttttca aatttaatat cttcttcaag caacctttca
      301 ataaattttt ccatgtatca ctttccaaat tttatacaat tttacatgta aataaatttt
      361 taattacaaa ctaaaaaaac tgattattaa ttttataggc aagttaagta ga
//
LOCUS       DBBXPZ010000178          370 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.180, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000178 DBBXPZ010000000
VERSION     DBBXPZ010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 370)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 370)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.180"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            1..200
                     /locus_tag="ACJFD7_001805"
                     /pseudo
     CDS             1..200
                     /locus_tag="ACJFD7_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866842.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          176 a           55 c           47 g           92 t
ORIGIN      
        1 ttacttaaca cgccttgcag ggggataata gatacaaatt ttgaaagcaa aagaattagc
       61 ataacttcaa ctttaaaatt tcaagaaaaa aagaaaaagt agaagctaag gctgagaaag
      121 aagaagcaaa taaagacaat agcaattcta caaacacaaa taccaataaa aaagataaac
      181 ttttggatat atctgcttag tctaaaatat actatagcta tatctcctta aagaatacgc
      241 aataaatgat tttttgattt ttattaagct tttaaaacat cgaaaaaagg aaaaattaaa
      301 aaacacaaaa acaatatccc aaagtccata gcttagaaga agaccttgcg atacttaaaa
      361 acaacccata
//
LOCUS       DBBXPZ010000179          363 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.denovo.181, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000179 DBBXPZ010000000
VERSION     DBBXPZ010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.denovo.181"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(5..80)
                     /locus_tag="ACJFD7_001806"
     tRNA            complement(5..80)
                     /locus_tag="ACJFD7_001806"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(45..47),aa:Arg,seq:tct)
     gene            complement(100..175)
                     /locus_tag="ACJFD7_001807"
     tRNA            complement(100..175)
                     /locus_tag="ACJFD7_001807"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(140..142),aa:Lys,seq:ttt)
     gene            complement(180..256)
                     /locus_tag="ACJFD7_001808"
     tRNA            complement(180..256)
                     /locus_tag="ACJFD7_001808"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(220..222),aa:Asp,seq:gtc)
BASE COUNT          103 a           90 c           90 g           80 t
ORIGIN      
        1 tgattggcga cccctagagg atttgaacct ctgtttccac acagagagag tgttgtcctg
       61 ggccactaga cgaaagggtc ataaccctaa caataaaaat ggtgtcccgt gttggattcg
      121 aaccaacggc cccctcctta aaagggagat gctctaccgg ctgagctaac gagacaagat
      181 ggcgcagcgg acggggctcg aacccgcgac ctccgccgtg acagggcggc attctaacca
      241 gctgaactac cgctgcatcc aaagtaaaga agtagagatt ataaaaccta tttatgattt
      301 tataaaatgg tggtcactat aagactcgaa cttatgacat ccaccttgta agggtggcgc
      361 tct
//
LOCUS       DBBXPZ010000180        20286 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.guided.025, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000180 DBBXPZ010000000
VERSION     DBBXPZ010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20286)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20286)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20286
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.guided.025"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            22..2370
                     /locus_tag="ACJFD7_001809"
     CDS             22..2370
                     /locus_tag="ACJFD7_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HGG0860572.1"
                     /translation="MLNKELEIFKKNLSSYTQSCRKFFLKQGAFSLYHSKNMDNFIKK
                     AYDIVLKDYFDDFSPPGDNIPFCVLASKAYANNSLCFNESISLIFVYKDIKAFHLKPM
                     IKAFIEILNDAHLQIDSVILEFNGLYNASNELKTSIIQTRFICGSRILFKGIKTKFES
                     ILKENKNDFAKLLLENFKEFDIPFIKQEFNILKDFGGLNHLRSLESLLVLFKTSPKNY
                     ALNFIDEKNLSELRLAGDFLLSLKSAMNLLSAKDEDEFLLINVHDLSELMYKKAKKHF
                     GANELLVQKALQSMHTIGFYTHFLAKQIQDGLNHTLKQEYKFKTLVEVLEYLLKLEDK
                     QVIFDLHLVFALRRLKYGKKDIEKALILFEKIFYKRHSFCVLKLLLDSGILKDLCKPF
                     WTVRFLSDEEGNYSFDEQVFLMLSEFEKYEDELETLQKLKTYEKMILKLVILLSAIES
                     ENEISLAGIYRAYCSKFDLKNEILEWGLKIFKNNNALKDLVEKEDIYNPIVVSSLVSK
                     LENLENLELLYTLTWLKAKALNYNAFYFRVLDKLLENAKQGFEDENLLEESARRVKKE
                     LTLKRSKIFLEQDEILQDKIIHIKSNLFIIKNTFEDIVMISKLAKENDFKFWFSNETN
                     LSLQIVAPLHFNIAIILSSLTNLNLIFMNFFELFDDKIYLRFEYDNIISDEQKLKLCE
                     LLNSNLSGFNLKKIKKPIIKKEELKLDLNYSKMYAKLGLNTKDQQGLMAYLMNVFNEL
                     ELVLCAAKIQTIRQRTRNIFIFQKNEKLEHSEQKLVNLLISE"
     gene            2375..4171
                     /gene="glmS"
                     /locus_tag="ACJFD7_001810"
     CDS             2375..4171
                     /gene="glmS"
                     /locus_tag="ACJFD7_001810"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:1901137 - carbohydrate derivative
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HGG0860573.1"
                     /translation="MCGIVGYIGNNEKKQIILNGLKELEYRGYDSAGMAVMQEGELSF
                     FKAVGKLENLANKCTDFESQGYGFAVGHTRWATHGKPTEINAHPHLGQYSCVIHNGII
                     ENYKEIKDKLEKEGVSFLSQTDTEVIVQLFEFYARNLGVFEAWQKTIKELRGAFATLL
                     VTKKDPNHVYFAKNAAPLIIGKNANKEWYFSSGDAPLIGSCDEVMYLEDLSLGYASKD
                     ELVVYENDILKSLCFSKLSGDKAYAKKDGFRFFMEKEIYEQSRVMSEVLMGRIQGDEV
                     VFDELNNEDLSQVDEITLCACGTSYHAAMASAYLFERIAKVKAKVEIASEFRYREAII
                     KKDSLFIVISQSGETADTLEALKIAKEQGAKTFAICNVDNSNIVRLAHLSLLTRAGIE
                     KGVASTKAFATQVLTLWMLAIFMAQKRNLNVSAEIKALLHTPNCVSVKQALHEKIHRL
                     SKRYLDGHGFFFIGRDVFYPLALEGALKLKELSYLHAEGYPAGEMKHGPIALADSKLY
                     TIALMPKHMLYEKTKSNVEELIARDSTVLSISPLEFDLSDDFIKTNEQDHYMCEFFEM
                     MVITQLLAMEISIRLGNDVDMPRNLAKSVTVE"
     gene            4174..7299
                     /locus_tag="ACJFD7_001811"
     CDS             4174..7299
                     /locus_tag="ACJFD7_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HGG0860574.1"
                     /translation="MKKFFCLTLVCKLFALSEFELHHIDKVHKLGYSGDTIIIGVADD
                     AFNQDHISLKDKILKSTYPTDTAGKQLIPDLKKSTHGSHVAGIAVGAKIGDSKPYGVA
                     YGAKFYGAGVFPNGSYTQIPDIYNFFKDVSIINNSWGINFYPYFNLKASNSGLVDCTQ
                     TNQGTSYNICNTPLEYVMKADKVANDMMRLSKDKGVLNVFAAGNEGILSPALHAILPS
                     YDESLRAWLAVGALDANEITLESDGTLIIKSQGLADFSNGFKGATNFSLVAAGVNINN
                     VDSSTNDKFTKKSGTSMAAPMVSGTAALVKQNFPFLDGKQIADILLSTANKNYKAPKF
                     TVKQVTDGTNQPKFLIVYISQDPPRIEDEIKRDLKQLYNGIQVQVNGQWIDYSDYIWD
                     NRDSAQSQKLNTSTISSINGVVRVEKEELFGQGILDAQKALKGLSILDANRLSDQDVL
                     KYEQEPNTAYYTINTAGYDAEFSNDISQRKWDESTHLSSAINKPTHLANLNIGLSKEG
                     EGILIISGQNTYEGATLIKQGELKLKGKVKNNAYVEQKAILSGNGIVGQNLNNKGIVR
                     PGNEDLNDLTVQGTYTQEGVDSKLQLDFGNYKNSKLIAKTYDIKSGNLEYIPLPKYYI
                     LNKPVKINLGDLEKSLSSFNHVLIQNTYALNFDFILSDDLVSINKTLIKPNLKPNAYE
                     IPNTSLGNALRQLRSRADLSQTYQEFFASLDNGIDVKTKLNRIEGSGYLSTFSNHNQS
                     NLMQNNMLFTLHPLNINNFAQNNNILLASTYLPRIFSNEEYFWHLTPSYKYYKDKDFS
                     GQKTGANISLGENFSSGFLAYALSLSSAKFNFNNGSDLKSYNMDLLLNYNHDLDFIKI
                     LSGLGIGVGFNTLNRFVVEQPIEGKYKTLQTSAQLGVTKDIILGQDFIFNPLMYFTHS
                     FFYQEDFKENKSPFAKNYESLKHHSINANLGFNLAKNIEQDDYQASFSTFVIFEKRIY
                     GRTLENKASFVDFPITFIQKYKLKDNILSQGFNSEFLYKNNVFWQFMLMNRFSHNAYE
                     LHLMSSVGKRF"
     gene            7355..8746
                     /gene="fumC"
                     /locus_tag="ACJFD7_001812"
     CDS             7355..8746
                     /gene="fumC"
                     /locus_tag="ACJFD7_001812"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045239 - tricarboxylic acid cycle
                     heteromeric enzyme complex [Evidence IEA];
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006106 - fumarate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HGG0860575.1"
                     /translation="MEYRVEHDTMGEVKVPNDKYWGAQTERSFENFKIGCEKMPKVLI
                     YAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSN
                     MNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLI
                     PALDELIATFEKKVKEFDGIIKIGRTHLQDATPLTLAQEFSGYLSMLLHSKEQIIASL
                     PTLRELAIGGTAVGTGLNAHPELSQKVSEELTQLIGTKFVSSPNKFHALTSHDAINFT
                     HGAMKGLAANLMKIANDIRWLASGPRCGLGELIIPENEPGSSIMPGKVNPTQCEAVTM
                     VAVQVMGNDAAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEP
                     NRAKIDHNLHNSLMLVTALNPHIGYENAAKVAKNAHKKGISLKESAMELGLVSEEDFN
                     KFVDPTKMIGSKA"
     gene            complement(8776..9819)
                     /locus_tag="ACJFD7_001813"
     CDS             complement(8776..9819)
                     /locus_tag="ACJFD7_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HGG0860576.1"
                     /translation="MQNGKFFLISFILVILFLLLYLFKGFLLVIIIASLMAVATSNIN
                     AKFLNLTKGHKFLASILTTACMVLLFFAPFVYAMIELAKALKNFDINLVTQTLDYVKN
                     YQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYASSFTKSGAKFLIDMVLICVFYF
                     FANLYGTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGLITI
                     FYGYDGILMGVIFAVSSLIPAIGGALIYMPVSLYEFASNNLNSALVIFIYSVIVISFI
                     ADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILTFFVST
                     LRMYVILKDKNLI"
     gene            complement(9823..10830)
                     /gene="ruvB"
                     /locus_tag="ACJFD7_001814"
     CDS             complement(9823..10830)
                     /gene="ruvB"
                     /locus_tag="ACJFD7_001814"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HGG0860577.1"
                     /translation="MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFITA
                     AKKRNECLDHILFSGPAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLS
                     EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
                     AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR
                     IALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKP
                     IGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSYSALKLNYEKTLFE
                     E"
     gene            10921..11331
                     /locus_tag="ACJFD7_001815"
     CDS             10921..11331
                     /locus_tag="ACJFD7_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase"
                     /protein_id="HGG0860578.1"
                     /translation="MGILTKLELDYEIDDIEKFLQFFRTMCDRFEPLIIKLGSDSVRY
                     KEAIKELETLAHNTAWAARRLNLEEVTDFCVFCEEMMAQANRFNGPASDEFTDWMLLM
                     SDQFEKYCRSYENDDSVLAVFNPLIVNVPNIISK"
     gene            11332..11690
                     /gene="ssrA"
                     /locus_tag="ACJFD7_001816"
     tmRNA           11332..11690
                     /gene="ssrA"
                     /locus_tag="ACJFD7_001816"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            11746..12318
                     /locus_tag="ACJFD7_001817"
     CDS             11746..12318
                     /locus_tag="ACJFD7_001817"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860579.1"
                     /translation="MKLRMIYYRERWHIKRDLYDWWLRKIKEGASVGHRYSCLCVLAS
                     YAVKCDIPEDELFTDAFSLLQFLDDMSDDEHNRFTKRDIMDAMQFYQENYVTYSRSEA
                     ERVSAIPMPANKRNYQKQADHLEKARAIRDIRMKRQDRDWREGNGRPKGSGEKSKIVE
                     EWQRQHPDGKKADCIRETGLSKPTVYKWWK"
     gene            12849..14768
                     /gene="tet(O)"
                     /locus_tag="ACJFD7_001818"
     CDS             12849..14768
                     /gene="tet(O)"
                     /locus_tag="ACJFD7_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance ribosomal protection
                     protein Tet(O)"
                     /protein_id="HGG0860580.1"
                     /translation="MKIINLGILAHVDAGKTTLTESLLYTSGAIAELGSVDEGTTRTD
                     TMNLERQRGITIQTAVTSFQWEDVKVNIIDTPGHMDFLAEVYRSLSVLDGAVLLVSAK
                     DGIQAQTRILFHALQIMKIPTIFFINKIDQEGIDLPMVYREMKAKLSSEIIVKQKVGQ
                     HPHINVTDNDDMEQWDAVIMGNDELLEKYMSGKPFKMSELEQEENRRFQNGTLFPVYH
                     GSAKNNLGIRQLIEVIASKFYSSTPEGQSELCGQVFKIEYSEKRRRFVYVRIYSGTLH
                     LRDVIRISEKEKIKITEMCVPTNGELYSSDTACSGDIVILPNDVLQLNSILGNEILLP
                     QRKFIENPLPMLQTTIAVKKSEQREILLGALTEISDGDPLLKYYVDTTTHEIILSFLG
                     NVQMEVICAILEEKYHVEAEIKEPTVIYMERPLRKAEYTIHIEVPPNPFWASVGLSIE
                     PLPIGSGVQYESRVSLGYLNQSFQNAVMEGVLYGCEQGLYGWKVTDCKICFEYGLYYS
                     PVSTPADFRLLSPIVLEQALKKAGTELLEPYLHFEIYAPQEYLSRAYHDAPRYCADIV
                     STQIKNDEVILKGEIPARCIQEYRNDLTCFTNGQGVCLTELKGYQPAIGKFICQPRRP
                     NSRIDKVRHMFHKLA"
     gene            14820..14993
                     /locus_tag="ACJFD7_001819"
     CDS             14820..14993
                     /locus_tag="ACJFD7_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich KTR domain-containing protein"
                     /protein_id="HGG0860581.1"
                     /translation="MMKCEWILCPVCGSKTRNKIRKDTVLENYPLYCPKCRQERLIKV
                     DNLKITVIKEPDA"
     gene            15747..18032
                     /locus_tag="ACJFD7_001820"
     CDS             15747..18032
                     /locus_tag="ACJFD7_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002821824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HGG0860582.1"
                     /translation="MKKNASSKILLSLGVATLLYSSAFAQEQNINLTESSDIGKYFEE
                     NGKDINLKNPDDYKGKDLSITMGVWDLPNDDYDNADYRLNIDIGKNNTLSFTHNNGEN
                     PAYVTNLNATAQEVKTTDIVLQAFAPSVINGNLTMTSSGSEAITEDEKKGSGIILYNG
                     TVEGKSANGSLTINGNFTADKTLFATYGNFVKVNGTANLTNSNFGLIKRSYTDLEANN
                     VVMVQAKDFNKDILEEKSNNNAGALLVKFLNDYVSTDLHGKDVIETGAVIDISDEDEY
                     GDGKKGLVDYKLSVQNCGGNKCLVVNGGATAAAKDKLTQLKVDINAIDKLLKNEFDSS
                     QDEEWKQAKEALEKQKTELEKLQQEAMQNGGKIDDEKYIDLVNKNLNLNLSANDKASI
                     LALRSITEQLGSIGADLASREGVKLALDIKKDTDNTGKSVSNLNSASSAVNTTMNISN
                     DVSIGSRVAMLNNPFGTYASKMNGLKFAALDSDMRPSYVNEYTNSVWANAFGGANIID
                     GDSGAMYGATIGVDKQANDDVLWGAYFTYANAKIKDNNLEQKSDNFQLGMYSTINIAP
                     QWELNLKAYAQVSPTKQDNVQTDGAYNSDYTSKFLGLSANAGRVFDFSDNTLFIKPFA
                     GVNYYFSYTPSHTENGAIAKDIDSMKNNSVSVEVGAEFRKYMNENSYIFVTPKIEQFV
                     INSGDDYTANLAVNNAFFTSVEANNKKKTYGQIIVGGNVDFTNQLSMNLGFGAKQILA
                     GRVDSKNETYLSGQVGLKYKF"
     gene            complement(18172..20280)
                     /locus_tag="ACJFD7_001821"
     CDS             complement(18172..20280)
                     /locus_tag="ACJFD7_001821"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HGG0860583.1"
                     /translation="MQLKKEKLMQTSPDMFINRELSWLRFNSRVLDQCSKNLPLLEKL
                     KFIAIYCTNLDEFYMIRVAGLKQLFSAGVNASSSDEMTPLQQLKAIRKYLHQEKELLE
                     RYFNEITSELEKENLFIKHYENLDENLKQKCDEYFFSNIFPVIVPIAVDATHPFPHLN
                     NLSFSLAVKICDKAHPELVKFGMIRIPRVLPRFYEVSANIYVPIESIVHQHAEEIFPG
                     YKLLASAAFRVTRNADMVIEEEEADDFMMILEQGLKLRRKGAFVRLQIQKDADEQIVE
                     FLNTHMKIFHKDVYEYSILLNLPSLWQIAGNKTFTHLLSPLYTPKTLPPFDENLSIFD
                     AVEKEDILIIQPFESFDPVYKFIKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASD
                     GKQVTVMVELKARFDEENNLHWAKALENAGAHVIYGITGFKVHAKVSQVIRKQGDKLK
                     FYMHLSTGNYNASSAKIYTDVSYFTSKAEFARDTTSFFHILSGFSKNRRLQTLSMSPN
                     QIKEKVLEMIRIETSKKNEGVIVAKMNSLVDSDIIQALYEASMEGVQIDLIIRGICCL
                     KPDEEYSKNIRVRSIIGKYLEHARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIY
                     DERNKAKLAQFLRLQLSDNVLAYELKNNGEYEKIPSSEKIIDSQQTLEEYVSKIYKTL
                     KKDTDQSRATHLASKLFKEN"
BASE COUNT         6987 a         2898 c         3768 g         6633 t
ORIGIN      
        1 aatttaaaga gagtagaaat tttgttaaat aaagaattgg aaatttttaa aaaaaatctt
       61 agttcctata cccaaagttg tagaaaattt tttcttaagc aaggggcgtt tagcttatat
      121 cattctaaaa atatggataa tttcataaaa aaagcttatg atatagttct taaagattat
      181 tttgatgatt tttcacctcc aggtgataat atcccttttt gtgttttagc aagcaaagca
      241 tatgcaaata atagtctttg ttttaatgaa agtatttctt tgatttttgt ttataaagat
      301 attaaggctt ttcatttaaa acctatgatt aaggctttta tcgaaatttt aaatgatgcg
      361 catttgcaaa ttgactctgt tatcttagaa tttaacggac tttataatgc tagcaatgag
      421 cttaagactt ctataataca aactcgtttc atatgtggtt ctaggatttt atttaaaggg
      481 attaagacaa aatttgagag tattttaaaa gaaaataaaa atgattttgc caagcttttg
      541 ctagaaaatt ttaaagaatt tgatattcca tttataaagc aggaatttaa tatcttaaaa
      601 gattttggcg gattaaatca tttaagatcc ttagagagtt tgcttgttct ttttaagact
      661 tctccaaaaa attatgcttt aaattttata gatgaaaaaa atttaagcga gttgcgttta
      721 gctggagatt ttttactttc tttaaaatca gcgatgaatt tattaagtgc taaagatgag
      781 gatgagtttt tacttattaa tgttcatgat ttgagtgaat taatgtataa aaaagctaaa
      841 aaacattttg gagcaaatga gttgttggtt caaaaggctt tacaaagtat gcatactata
      901 ggtttttata cacacttttt agcaaagcaa attcaagatg gattaaatca tactcttaaa
      961 caagaatata aatttaaaac tcttgtggaa gttttagaat acttattaaa acttgaagat
     1021 aaacaggtta ttttcgatct tcacttggtt tttgccctaa gaagattgaa atacggtaaa
     1081 aaagatatag aaaaagcttt aatacttttt gagaaaattt tttataaaag gcatagtttt
     1141 tgtgttttaa aacttttgct tgatagtgga attttaaaag atttatgcaa gcctttttgg
     1201 acagttcgtt ttttaagcga tgaagaagga aattatagtt ttgatgagca agtttttctt
     1261 atgttaagtg aatttgaaaa atacgaagat gagcttgaga cactccaaaa acttaaaact
     1321 tatgaaaaaa tgattttaaa gcttgtgata cttttaagtg ctatagaaag tgaaaatgaa
     1381 atttctttag caggcatata tagagcgtat tgctccaaat ttgatttaaa gaatgaaatt
     1441 ttagaatggg gtcttaaaat atttaaaaac aataatgcct taaaagatct tgtagaaaaa
     1501 gaagatatat acaatcctat tgttgtaagt agtttggttt ctaagctaga aaatttagaa
     1561 aatttagagc ttttatatac tttaacttgg ctaaaggcta aggctttaaa ttataatgct
     1621 ttttatttta gagttcttga taaactttta gaaaatgcaa aacaaggttt tgaagatgaa
     1681 aatctacttg aagaaagtgc aagaagggta aaaaaagaat taacacttaa aagaagtaag
     1741 atttttttag agcaagatga aattttgcag gataaaatca tacatatcaa atcaaatctt
     1801 tttattataa aaaatacttt tgaagatatt gttatgattt ctaaattagc caaagaaaat
     1861 gattttaaat tttggtttag taatgaaaca aatcttagtt tgcaaattgt tgcaccactt
     1921 cattttaata ttgccattat tttaagttct ttaacaaatt taaatcttat tttcatgaat
     1981 ttttttgaac tttttgatga taaaatttat ttaaggtttg aatatgataa tattatcagt
     2041 gatgagcaaa aactaaaact ttgtgagctt ttaaattcaa atctttctgg ttttaatttg
     2101 aaaaaaatta aaaagccaat cattaaaaaa gaggagttaa aattagactt aaactattct
     2161 aaaatgtatg ccaaattagg tcttaatact aaagatcagc agggtttaat ggcgtatttg
     2221 atgaatgttt ttaatgaact tgaacttgtt ttatgtgcag caaaaattca aaccataaga
     2281 caaaggacgc gtaatatttt tatttttcaa aagaatgaaa aattagaaca tagcgagcaa
     2341 aagttagtta atttattaat aagtgagtaa aaaaatgtgt ggaatcgtag gctatatagg
     2401 aaataatgaa aaaaaacaaa ttatactaaa tggacttaaa gaattagaat atcgtggcta
     2461 tgatagtgcg ggtatggcag tgatgcaaga aggcgaactt agttttttta aagctgtagg
     2521 aaagcttgaa aatttggcga ataaatgcac agattttgaa agtcaaggtt atggttttgc
     2581 tgtaggtcat acaagatggg caacccatgg taaacctact gaaatcaacg cacaccctca
     2641 tttaggacag tattcttgcg tgattcacaa tggtattata gaaaattata aagaaattaa
     2701 agataaactt gaaaaagaag gcgtgagttt tttaagtcaa acagatacag aagtgattgt
     2761 tcagcttttt gaattttatg caagaaattt gggagttttt gaagcttggc aaaaaaccat
     2821 caaagaactt cgcggtgctt ttgctacttt gttagtaaca aaaaaagatc ccaatcatgt
     2881 gtattttgca aaaaatgctg ctcctttgat tatcggtaaa aatgcaaata aagaatggta
     2941 tttttcttca ggtgatgcgc ctttgatagg aagttgtgat gaggtaatgt atcttgaaga
     3001 tttaagcttg ggatacgcga gtaaagatga gcttgtcgtt tatgaaaatg atattttaaa
     3061 atcactttgt ttttctaagc tttcaggtga taaggcttat gcaaaaaaag acggctttcg
     3121 tttttttatg gaaaaagaaa tttatgaaca aagtcgcgtg atgagtgaag ttttaatggg
     3181 gcgtattcaa ggcgatgaag tcgtttttga tgagctaaac aatgaagatt taagtcaagt
     3241 agatgaaatc acgctttgtg cttgtggaac aagctatcat gctgcaatgg caagtgctta
     3301 tttgtttgaa agaattgcta aagttaaagc taaagtagaa attgcaagtg aatttcgata
     3361 ccgtgaagca attataaaaa aagattcttt atttatcgtt atttctcaaa gtggagaaac
     3421 agcagacact ttagaggctt taaagattgc aaaagagcag ggtgctaaga cttttgcaat
     3481 ttgcaatgtg gataattcta atatagtgcg tttagcacat ctaagtcttt taactcgtgc
     3541 gggcatagaa aaaggagttg cttcaactaa agcttttgct actcaggttt taacactttg
     3601 gatgcttgct atttttatgg cacaaaaaag aaatttaaat gtttctgctg aaattaaagc
     3661 acttttgcat actccaaatt gcgtgagtgt aaaacaggct ttacatgaaa aaattcatcg
     3721 tttatccaag cgttatttag atggacatgg ctttttcttt ataggcagag atgtgtttta
     3781 tcctttggct ttagaaggag ctttgaaact taaagaatta tcttatcttc acgctgaggg
     3841 ttatcctgca ggagagatga aacatggccc tattgctttg gctgattcta agctttatac
     3901 tatagcttta atgccaaagc acatgcttta tgaaaaaaca aaatcaaatg ttgaagagct
     3961 tattgctagg gattctacag tgcttagcat ttcaccttta gaatttgatt taagtgatga
     4021 ttttataaaa accaatgagc aagatcatta tatgtgtgaa ttttttgaaa tgatggtcat
     4081 tactcaactt ttggcgatgg aaatttccat aagacttggc aatgatgtgg atatgccaag
     4141 aaatttggct aaaagcgtaa cggtagaata gaaatgaaaa aatttttttg tttaacttta
     4201 gtttgtaaac tttttgcttt aagcgaattt gaacttcatc atattgataa agtacataag
     4261 ctagggtata gtggagatac tattataata ggtgtagccg atgatgcttt taatcaagat
     4321 catattagtt taaaggataa gattttaaag tctacttatc ctactgatac agctgggaaa
     4381 cagcttatac ctgatttgaa aaaatcaaca cacggaagtc atgtagcagg tatagctgtt
     4441 ggagcaaaga taggcgatag caaaccttat ggagtggctt atggggcaaa attttatgga
     4501 gctggggtgt ttccaaatgg ctcttacact caaattcctg atatttataa ttttttcaaa
     4561 gatgtgagta ttattaataa tagctggggt attaattttt atccttattt taatcttaag
     4621 gcttcaaatt ctggattagt agattgtact caaactaatc aagggacaag ctataatatc
     4681 tgtaatactc ctttggaata tgttatgaaa gcagataagg ttgctaatga tatgatgagg
     4741 cttagcaagg acaagggagt attaaatgta tttgctgctg gtaatgaagg aattcttagc
     4801 cctgctttgc atgcgatttt accaagttat gatgaatctt taagagcttg gttggctgtt
     4861 ggagctttgg atgcaaatga gattacttta gaatcagatg ggactttaat aattaaaagt
     4921 caaggtttgg ctgattttag taatggtttt aagggagcta cgaatttttc tttagttgct
     4981 gctggagtaa atattaataa tgttgattca agcactaatg ataagtttac aaaaaaaagt
     5041 ggaacttcta tggcagcacc tatggtaagt ggaacagcgg cactggtcaa gcaaaatttc
     5101 ccctttttgg atggtaagca aattgctgat atactgttaa gtacagcaaa taaaaattat
     5161 aaggctccaa aatttactgt taaacaagta accgatggaa caaatcaacc taaatttctt
     5221 attgtgtata tttcgcaaga tccacctagg atagaagatg aaataaaacg ggatttaaaa
     5281 cagctttaca atggaataca agttcaagtt aatggacaat ggattgatta tagtgattat
     5341 atttgggata atagagatag tgcgcagtca caaaaactta atacttctac tattagttct
     5401 attaatggag tagttagagt tgagaaagaa gaattatttg gacaaggaat tttagatgca
     5461 caaaaggcgt taaaaggact gagtatttta gatgcaaaca gactcagtga tcaggatgta
     5521 ttaaaatatg agcaagaacc taatacagct tattatacta taaacactgc aggttatgat
     5581 gctgaatttt ctaatgatat tagtcaaaga aaatgggatg aaagtactca tttatcaagt
     5641 gctattaata aacctacaca tttagctaat cttaacatag gattatctaa agaaggtgaa
     5701 ggtattttga ttatcagtgg tcaaaatact tatgagggtg caactttaat caaacaagga
     5761 gaattaaagc ttaaaggaaa agttaaaaat aatgcttatg tagaacaaaa agcaatatta
     5821 agcggtaatg gtattgtagg gcaaaattta aacaataaag gcatagttag acctggaaat
     5881 gaagatttga atgatttaac cgtgcaagga acttatactc aagaaggagt tgactctaaa
     5941 ttgcaacttg attttggtaa ttataaaaat tctaaactga ttgcaaaaac ttatgatatt
     6001 aagagcggga atttagaata tattccttta cctaaatact atatcttaaa taagccagtg
     6061 aaaattaatt taggagattt ggaaaaaagt ttatcatctt ttaatcatgt tttgatacaa
     6121 aatacctatg ctttaaattt tgattttatt ttaagtgatg atttagtgag tattaataaa
     6181 accttaataa aacctaattt aaagccaaat gcctacgaaa ttcctaatac aagcttggga
     6241 aatgctttaa gacaattgcg atctagggca gacttgagtc agacttatca ggaatttttt
     6301 gcttctttag ataatggaat agatgtaaag actaaattaa atagaataga aggttcaggg
     6361 tatttaagca cttttagtaa tcataatcaa tctaatttaa tgcaaaataa tatgttattt
     6421 acccttcatc ctcttaatat taataatttt gcacaaaaca ataatatctt acttgctagt
     6481 acttatttac ctagaatttt tagcaatgaa gaatattttt ggcatcttac tccaagttat
     6541 aaatactata aagataaaga tttttcaggt caaaaaacag gtgctaatat ctctttagga
     6601 gaaaatttct catcaggctt tttagcttat gctttatctc tttctagcgc taaatttaat
     6661 tttaataatg gtagtgattt gaagagttat aacatggatt tattgcttaa ttataaccat
     6721 gatttagatt ttataaaaat attaagcgga ttaggtatag gtgtaggatt taatactctt
     6781 aatcgttttg tagtagagca gccaattgaa ggcaaatata aaacattgca aacttcagcc
     6841 cagcttggtg taactaaaga tattatttta ggtcaagatt ttatttttaa tcctttaatg
     6901 tattttacac atagtttttt ttatcaagaa gattttaaag aaaataaaag tccttttgct
     6961 aaaaattatg aaagtttaaa acatcatagc ataaatgcaa atttaggttt taatcttgct
     7021 aaaaatatag agcaagatga ttatcaagct tctttttcta cttttgtaat ttttgaaaaa
     7081 agaatttatg gaagaacttt agaaaataag gctagttttg ttgattttcc tattactttt
     7141 attcaaaaat ataaattaaa agataatatt ttaagtcaag gttttaattc agaattttta
     7201 tataaaaaca atgtattttg gcagtttatg ttaatgaata gattttctca taatgcctat
     7261 gaattgcatt taatgagttc agtaggaaaa cgtttttgaa agtatttatt tttttagctt
     7321 ataataaata aaattttaat caaaggaaaa aattatggaa tacagagttg aacatgatac
     7381 tatgggtgaa gttaaggtcc caaatgataa atattgggga gctcaaactg aaagaagttt
     7441 tgaaaatttc aaaattggtt gtgagaaaat gccaaaggtt ttaatctatg cttttgcaaa
     7501 tcttaaaaaa tctttagctt tagtcaataa caaacttggc aaacttgatg atgctaagaa
     7561 aaatgctata gttcaagctt gcgatgagat tatcgcaggt aaatttgatg ataattttcc
     7621 acttgcgatt tggcaaacag gttcaggcac gcaaagcaat atgaatatga atgaagttat
     7681 tgcaaatcgt gctactgaaa tcatgggcgg ggattttcgc aaagaaaagc ttgtgcatcc
     7741 aaatgatcat gttaatatga gtcaaagttc aaatgatact tttccaacag ctatgagtat
     7801 agttgcagtt gagcaagtag agaaaaagct tatccctgca cttgatgagc ttattgcaac
     7861 ttttgaaaaa aaagtaaaag aatttgatgg cattattaag ataggtcgca cgcatttaca
     7921 agatgctact ccacttactc tagcacaaga atttagtgga tatctttcta tgcttttaca
     7981 ttcaaaagag caaatcatcg cttctttacc aactttaaga gaacttgcca taggaggaac
     8041 cgcagtagga acagggctta atgcacatcc agaattaagc caaaaagtaa gtgaagagct
     8101 aactcaactt ataggtacaa aatttgtttc aagtccaaat aaatttcatg ctttaacaag
     8161 tcatgatgcg attaatttta ctcatggagc gatgaaaggt ttggctgcaa atttaatgaa
     8221 aattgcaaat gatattagat ggctagcttc aggtccaaga tgcggtcttg gtgagcttat
     8281 catccctgaa aatgagccag gaagttcgat tatgccaggt aaggtaaatc ctacccagtg
     8341 cgaagctgtt actatggttg ctgtacaagt gatgggaaat gatgcagcta tcggatttgc
     8401 agcaagtcaa ggaaattttg aacttaatgt gtttaagcct gtgattattt ataatttctt
     8461 gcaaagtctt gatttgttgg ctgattctat gcattcattc aatatccatt gtgctgtagg
     8521 catagaacca aatcgtgcaa aaatcgatca taatcttcat aattctttaa tgctagttac
     8581 cgctctaaat ccacacatag gttatgaaaa cgctgctaaa gtagccaaaa atgcccataa
     8641 aaaaggtatt tctttaaaag aaagcgcaat ggagcttggt ttggttagcg aagaagattt
     8701 caataaattt gttgatccta ctaaaatgat aggctcaaaa gcctagaaca tcaaacttgc
     8761 cttttttaag gcaagttaaa ttaaattctt atcttttaaa atcacataca ttcttaaagt
     8821 tgatacaaaa aaggttaaaa tcgcaggacc taatataata ccccaaaaac caaaggtaga
     8881 aattcctgct atcatagcca agaaaattaa aagttcattg attttagtag gggtttttac
     8941 aagttttttg ttgatccatt tgatgattaa aggtttgatt aaagtatctg ctataaaaga
     9001 aattacaatt acagaataaa taaaaataac aagagctgag ttaagattgt ttgaggcaaa
     9061 ttcataaaga cttacaggca tataaattaa agcacctcct atagcaggta tgagagaact
     9121 tacagcaaaa attactccca ttaaaattcc atcataacca taaaatattg tgattaaacc
     9181 aaaaagcgca ccttgaaata tcgctacaat caccatagag taaagtacaa cagccataac
     9241 attacccact tcgcttaaaa catcatcaag ttctttttta tcaataggaa tgatggattt
     9301 aagatagata acaagttctg ttccatatag atttgcaaag aaataaaata cgcaaattaa
     9361 aaccatatct ataagaaatt tagctcctga ttttgtaaaa cttgaagcat aacttagaat
     9421 ttgtttagaa atactattta aatctataga agctaaaaat tctttgattt taggttctaa
     9481 aaaattaaag ctttcaggca aggtgaattg atagtttttg acataatcaa gtgtttgtgt
     9541 aactaaatta atatcaaaat tctttaaagc tttggcaagt tctatcatgg cataaacaaa
     9601 aggtgcaaag aaaagcaaaa ccatacaagc tgttgtaaga atggaagcta aaaatttatg
     9661 tcctttggta agatttaaaa attttgcatt gatgtttgag gtagctaccg ccattaaact
     9721 agctatgata attacaagta aaaaaccttt aaaaaggtaa agtaaaagaa ataaaataac
     9781 taaaataaag cttataagaa agaattttcc attttgcaaa atttactcct caaataaagt
     9841 tttttcatag tttagtttta aagcactata actttttgca cttgctatac gcccttttgc
     9901 agtgcgttct atatagccat tagctagtaa ataaggctcg attacatctt ctatggtatt
     9961 ttcatcttca cttaaagccg cagcaatgct tgcaagtccg ataggttttt gtttagcagc
    10021 agttaaaagt tcaagatatc ttaaatccat cgcatcaaaa ccaagctcat tcactcctaa
    10081 agaatttaag gcctcattag cccttttttc tgtgataatc tcttcatcat taacatcagc
    10141 aaaatctctt acccttttta aaagccttag ggctattcta ggggttgaac gacttctttt
    10201 agcgatctca agtgcggctt tttcttcgca agttttatta agttttaaag ctgctttttg
    10261 caagatgaga gcaagttcgc tatctttgta aaattctaat ctaaattgca taccaaaacg
    10321 atctcgcaaa ggattactaa gcatacctgc acgcgttgta gctcctataa gagtaaattt
    10381 tggtaaatcg atttttatgg tttgagcagc tggaccacta cctatgataa tatcaaggcg
    10441 gtaatcctcc attgcagggt aaagcacttc ttcgatagca gggcttaagc gatgaatttc
    10501 atcaataaaa agtatatccc cttcgctaag attggttaaa atagcggcta aatccccgct
    10561 tttttctatc ataggagcgg ccgttgtttt gatatttgca cccatttcat aggagatgat
    10621 attagctagt gttgtttttc caagtcctgc aggaccacta aaaagtatat gatctaaaca
    10681 ttcattgcgt tttttggctg cagttataaa gatatttaaa ttttttttaa tgctttcttg
    10741 acctatataa ccatcaaaat ttgaaggacg taacgaagtt tcgtaagttt catcaaagga
    10801 gtatttttct atttctacta ttctatccat atctttgctt atattttgga aaaattaaaa
    10861 taagatttta gctaaaattt gctagaattt acattaaact ttaatgatta tggtttaaaa
    10921 atgggaattt taacaaaatt agaattagat tatgaaattg acgatataga aaaattttta
    10981 caatttttta gaaccatgtg cgataggttt gaacctttaa tcatcaagct tggaagcgat
    11041 agcgtgcgtt ataaagaggc tataaaagag cttgaaactt tagcacacaa taccgcttgg
    11101 gcagcaagac gtttaaatct tgaagaagtg actgattttt gtgtattttg tgaagagatg
    11161 atggcgcaag caaatcgctt taacgggcct gctagtgatg aatttacgga ttggatgctt
    11221 ttgatgagtg atcaatttga aaaatattgt cgttcgtatg aaaatgatga ttctgtttta
    11281 gcggttttta atcctttaat tgttaatgtt ccaaatatta tttctaaata agggagcgac
    11341 ttggcttcga caggagtaag tctgcttaga tggcatgtcg ctttgggcaa agcgtaaaaa
    11401 gcccaaataa aattaaacgc aaacaacgtt aaattcgctc ctgcttacgc taaagctgcg
    11461 taagttcagt tgagcctgaa atttaagtca tactatctag cttaattttc ggtcattttt
    11521 gatagtgtag ccttgcgttt gacaagcgtt gaggtgaaat aaagtcttag ccttgctttt
    11581 gagttttgga agatgagcga agtagggtga agtagtcatc tttgctaagc atgtagaggt
    11641 ctttgtggga ttatttttgg acaggggttc gattcccctc gcttccacca tcacgctaat
    11701 tttaagtaaa tcataagttt atttcaaatt tttagaattt tttatatgaa gttaagaatg
    11761 atttattacc gtgagcgttg gcatatcaaa agggacttat atgattggtg gctgcggaaa
    11821 ataaaagagg gagcttctgt agggcataga tacagctgcc tttgcgtttt ggcgtcctat
    11881 gccgttaagt gcgatattcc ggaagatgag ctttttacgg acgctttttc cctattgcag
    11941 tttcttgatg atatgtcaga tgatgagcat aaccgtttta ctaagcgtga tataatggac
    12001 gctatgcagt tttatcaaga aaattatgtc acatatagtc gaagtgaagc ggaaagagta
    12061 tcggctattc ctatgccagc gaataaaagg aattaccaaa aacaggctga tcacttagaa
    12121 aaagcaaggg caattcgtga tattcgtatg aaaagacagg atagggattg gagagaggga
    12181 aatggtagac caaaaggcag cggagaaaag tcgaagattg tcgaagaatg gcagcgtcag
    12241 cacccggacg gaaagaaagc agactgcata cgggagacag gattgagcaa gcccacagtt
    12301 tacaagtggt ggaagtaggg catacttgaa atgccgaaag gcatatggta taatgccagt
    12361 aggcgaaaat gacagaagtg ctcatgtggc acagcaaaaa gccccggagg tcgcaactcc
    12421 ggggcttttc tattccgttc tgggtgggtg gcttaatccc aaggctggct accagttatt
    12481 cttctccgtc caaccatttg cagatgtagt aggcaactac acttgccaaa acagagagaa
    12541 aaaatgacag aagttcactc atgcggttca ccccctttct ctacctgtct gggggcggta
    12601 gcgtcgttca ttatatcaca ggggcagaaa tgccacaaga agccatttcc ccttgtttat
    12661 catcaaagcc ataaggaaaa gagtgtcaag ggcggtcata gaccgcagcg tttacccttg
    12721 atactctttt ttgttggcta taatgccgga ggggaaaacg gctattggag ttatttaccc
    12781 agtgatagga gtatttatca ctgggtattt ttatgccctt ttttgggtgt tgataggagg
    12841 aaaatcacat gaaaataatt aacttaggca ttctggctca cgttgacgca ggaaagacaa
    12901 cattaacgga aagtttattg tataccagtg gtgcaattgc agaactaggg agcgtagatg
    12961 aaggcacaac aaggacagat acaatgaatt tggagcgtca aaggggaatc actatccaga
    13021 cagcagtgac atcttttcag tgggaggatg taaaagtcaa cattatagat acgccaggcc
    13081 atatggattt tttggcggaa gtataccgtt ctttatccgt attagacgga gcagtattat
    13141 tagtttctgc aaaggatggc atacaggcac agacccgtat actgtttcat gcactacaga
    13201 taatgaagat tccgacaatt tttttcatca ataaaattga ccaagagggg attgatttgc
    13261 caatggtata tcgggaaatg aaagcaaagc tttcttcgga aattatagtg aagcaaaagg
    13321 ttgggcagca tccccatata aatgtaacgg acaatgacga tatggaacag tgggatgcgg
    13381 taattatggg aaacgatgaa ctattagaga aatatatgtc agggaaaccg tttaaaatgt
    13441 cagaactgga acaggaagaa aacaggagat tccaaaacgg aacgttattt cccgtttatc
    13501 acggaagcgc taaaaacaat ctggggattc ggcagcttat agaagtaatt gccagtaaat
    13561 tttattcatc aacgcctgaa ggtcaatctg aactatgcgg gcaggttttt aagattgaat
    13621 attcagagaa aaggcggcgt tttgtttatg tgcgtatata tagcggaaca ttgcatttga
    13681 gggatgttat tagaatatct gaaaaagaga aaataaaaat cacagagatg tgtgttccga
    13741 caaacggtga attatattca tccgatacag cctgctctgg tgatattgta attttaccaa
    13801 atgatgtttt gcagctaaac agtattttgg ggaacgaaat actgttgccg cagagaaaat
    13861 ttattgaaaa tcctctccct atgctccaaa caacgattgc agtaaagaaa tctgaacagc
    13921 gggaaatatt gcttggggca cttacagaaa tttcagatgg cgaccctctt ttaaaatatt
    13981 atgtggatac tacaacgcat gagattatac tttctttttt ggggaatgtg cagatggaag
    14041 tcatttgtgc catccttgag gaaaaatatc atgtggaggc agaaataaaa gagcctactg
    14101 ttatatatat ggaaagaccg cttagaaaag cagaatatac catccacata gaagtcccgc
    14161 caaatccttt ctgggcttct gtcgggttgt ccatagagcc gctccctatt ggaagcggag
    14221 tgcagtatga aagcagagtt tcacttggat atttaaatca atcgttccaa aatgcggtta
    14281 tggagggggt tctttatggc tgcgagcagg ggctgtatgg atggaaagtg acagactgta
    14341 aaatctgttt tgaatatgga ttgtattata gtcctgtaag tacccccgca gactttcggc
    14401 tgctttcccc tatcgtattg gagcaggctt taaaaaaagc agggacagaa ctattagagc
    14461 catatctcca ctttgaaatt tatgcaccgc aggaatatct ctcacgggcg tatcatgatg
    14521 ctccaaggta ttgtgcagat attgtaagta ctcagataaa gaatgacgag gtcattctga
    14581 aaggagaaat ccctgctaga tgtattcaag aatacaggaa cgatttaact tgtttcacaa
    14641 atgggcaggg agtctgcttg acagagttaa aaggatacca gccagctatt ggtaaattta
    14701 tttgccaacc ccgccgcccg aatagccgta tagataaggt tcggcatatg ttccacaagt
    14761 tagcttaaca gcttgcaaaa gtcatataaa atgagatttg aaaggattag agactaatta
    14821 tgatgaaatg cgaatggata ttgtgtcctg tttgtgggag caaaacccgt aataaaatta
    14881 ggaaggacac tgttttggag aattatcccc tttattgtcc aaaatgcaga caagaaagat
    14941 tgattaaagt tgacaacttg aagataactg tcatcaaaga gccagacgct taagacgcag
    15001 agccgatgaa attgtggaac aattcacgaa tcatcggctc tttttgtttc gtatttgaaa
    15061 gaacaaactc accaaataaa aaaaacgata ttcgggtggg ttattttgtt ataccctaaa
    15121 ttaccctctg aatttgtttt taaatttgga gggatttttt tatgtccttt tttcgggcag
    15181 ttatctatct gctcatacga agcaaaattt atcaatacat agcatatcag agaacggcag
    15241 gaaaccagtt aaaaaaattt ctgccagtgc aacggtactt ctcaccttga aagtagaagt
    15301 acaatctcca tacaatagaa ttactatttc ctataaccgt aaaggtcaca gagcctttgc
    15361 ggtttttctt ttgtcgattt ttgttggaaa gtgccgtagg gctgtttctg atatgcggtg
    15421 tcgttctccg cctctccatc tggatttttt acatttcaaa aattcagatg ggaggtattt
    15481 atggtgaaat atgcaccaag aaaggtatat atcagagaaa gtggcggcta tgtggaatta
    15541 tcctacacgg agttctgccg ttgcagggaa tccgaccaga ccttgaagca cagggggaag
    15601 taacggaacg gacggacagc ccttaaaatt ttgatatatt gggttttata atttttcatt
    15661 aaaaatttat agttttattt ttaagcttat ttttaggggg ggggtataat tattccttca
    15721 gtttaaattt attgaaggag aaacttatga agaaaaatgc ttcgagcaag atattgctaa
    15781 gtttaggtgt agcaactttg ctttattcga gtgcttttgc acaagaacaa aatattaatc
    15841 ttacagagtc ttcagatata ggaaaatatt ttgaagaaaa tggtaaggat atcaatctta
    15901 aaaatcctga tgattacaaa ggaaaagatt taagtatcac aatgggtgtt tgggatttac
    15961 caaacgatga ttatgataac gctgattatc gattgaacat tgatatcggt aaaaacaata
    16021 ctttaagctt tacacacaat aatggcgaaa atcctgctta tgtaacaaat ctaaacgcta
    16081 ctgctcaaga ggttaaaaca acagatatag ttttacaagc ttttgcacct tcggtgatta
    16141 atggaaattt aactatgact agctcaggga gtgaagccat taccgaagat gaaaaaaaag
    16201 gctcaggtat aattctttat aatggaacag ttgaaggaaa aagtgctaat ggtagcttaa
    16261 ctataaatgg aaattttact gccgataaaa ccctttttgc tacttatgga aattttgtta
    16321 aggtaaatgg aactgcaaat cttacaaatt caaattttgg acttatcaaa cgctcttata
    16381 cagacttaga agcaaataat gtagtaatgg ttcaagctaa agattttaac aaagatatct
    16441 tagaagaaaa atcaaataat aacgcaggtg cattacttgt aaaattttta aatgattatg
    16501 tttcaactga tcttcatggc aaagatgtta tagaaacagg agctgttata gatattagcg
    16561 atgaagatga atacggcgat ggaaaaaaag gcttagtaga ttataaactt agcgttcaaa
    16621 actgcggtgg caataaatgc ttggtagtta atggaggtgc tactgcagca gctaaagata
    16681 aactcacgca acttaaagta gatataaatg ctatcgataa attgcttaaa aatgaatttg
    16741 attctagtca agatgaagaa tggaaacaag caaaagaagc tcttgaaaaa caaaaaaccg
    16801 aacttgaaaa acttcaacaa gaagctatgc aaaacggcgg taaaatcgat gatgaaaaat
    16861 acattgattt agtaaataaa aacttaaatt taaatcttag tgctaatgat aaagcttcta
    16921 tcctagcact tcgttctatc acagaacaat taggaagtat aggagcagat ttagcaagta
    16981 gagaaggtgt aaaactagct ttagatatca aaaaagacac agacaacaca ggtaaatctg
    17041 tatctaatct aaattcagct tctagtgcag ttaataccac tatgaatatt tctaatgatg
    17101 tttctatagg ttctcgtgta gcaatgctaa acaatccttt tggaacttat gcttctaaaa
    17161 tgaatggtct taaatttgct gctttagata gtgatatgag accaagctat gtaaatgaat
    17221 ataccaatag tgtttgggct aatgcttttg gtggtgctaa cattatcgat ggagatagtg
    17281 gtgcaatgta tggtgctact ataggtgtag ataaacaagc taatgatgat gttttatggg
    17341 gtgcttattt tacttatgca aacgctaaaa tcaaagacaa taatttagaa caaaaaagcg
    17401 ataacttcca attaggtatg tattctacta tcaatatagc tccacaatgg gaacttaatc
    17461 ttaaagctta tgctcaagtt tctccaacta aacaagacaa tgttcaaaca gatggtgcat
    17521 ataactcaga ttatacaagc aaattcttag gacttagcgc taatgcaggt cgtgtgtttg
    17581 actttagtga taatacttta tttattaaac cttttgcggg agtaaattat tattttagtt
    17641 atactccatc tcatacagaa aatggtgcta ttgctaaaga tattgattct atgaaaaaca
    17701 attctgtaag tgttgaagtg ggtgctgaat ttagaaaata tatgaatgaa aactcttata
    17761 tttttgtaac tccaaaaata gaacaatttg ttatcaatag tggtgatgat tacacagcta
    17821 acctagctgt aaataatgct ttctttacta gtgtagaagc taacaacaag aaaaaaactt
    17881 acggacaaat tatcgtaggg ggtaatgtag attttacaaa tcaactcagt atgaatcttg
    17941 gctttggtgc taaacaaata ctagcaggta gagtagatag caaaaatgaa acttacttaa
    18001 gtggtcaagt aggacttaag tataaatttt aatcttaaaa atcatttcta aatcttttta
    18061 tagtttagaa atgattgttt atttctatgg gaaatctcct agggctttat cttaaagccc
    18121 ttttataaca aacaagtaaa taagtcttta gagtaaaaac cctaaaaact tttagttttc
    18181 tttgaaaagt ttagaagcta agtgcgttgc acgactttga tctgtatctt ttttaagtgt
    18241 tttataaatt ttacttacat attcttctaa ggtttgttga gaatctatga ttttttcaga
    18301 agaaggaatt ttttcatatt ctccattgtt tttaagctca taagctaaaa cattatcact
    18361 aagttgtaag cgtaaaaatt gagctaattt agctttattt ctttcatcat atataggagt
    18421 cataagctct aagcgacgct ctaaatttct tggcatccaa tctgcgctcg atataaaata
    18481 atttggttca ctatgtttaa aataaaatac tctagcatgt tctaagtatt ttcctatgat
    18541 gcttctaacg cgtatgtttt tgctgtattc ttcatcaggt tttaagcaac aaattccgcg
    18601 tatgataaga tcgatttgca ctccttccat acttgcttca taaagcgctt gtatgatatc
    18661 actatccaca agagaattca ttttagctac aatcacacct tcatttttct tgcttgtttc
    18721 aatgcgtatc atttctaaaa ctttttcttt gatttgattt gggctcattg aaagagtttg
    18781 aaggcgacga tttttactaa agcccgataa gatgtgaaaa aagcttgtcg tatctcttgc
    18841 aaattctgct ttgcttgtaa aataactcac atcagtatag attttagcac tgcttgcatt
    18901 ataatttcct gtgcttaaat gcatataaaa tttaagttta tctccttgtt tgcgtatgac
    18961 ttgagaaacc ttagcatgta ctttaaaacc tgtaatgcca taaataacat gagccccggc
    19021 attttctaaa gctttcgccc aatgaagatt attttcttca tcaaagcgtg cttttaattc
    19081 taccatcaca gttacttgtt ttccatcgct tgcagcatca attaaagctt gaactatatt
    19141 ggaatttttt tcaactctat aaagtgtcat tcttatggaa attacttcag gatctttgct
    19201 tgcttcttta ataaatttat aaactggatc aaaactttca aaaggttgta tgatgagtat
    19261 atcttctttt tctacagcat caaaaataga taaattctca tcaaaaggtg gtaaagtttt
    19321 aggcgtgtaa agtgggctta aaagatgtgt aaaggtttta tttcctgcga tttgccaaag
    19381 gctagggaga ttaagtaaga tagaatattc ataaacatct ttatgaaaaa ttttcatgtg
    19441 agtattaagg aattctacga tttgttcatc tgcatctttt tgaatttgca atcttacaaa
    19501 agctcctttt ctacgaagtt ttaagccttg ctctaaaatc atcataaaat catcagcttc
    19561 ttcctcttct attaccatat ctgcatttct agtcactcta aatgctgctg aagctaagag
    19621 tttatagcct ggaaaaattt cttctgcgtg ttgatggact atactttcta taggaacata
    19681 aatatttgca cttacttcat aaaaacgagg taaaactctc ggaattctaa tcattccaaa
    19741 ttttacaagt tcaggatgcg ctttatcgca aattttaacc gctagtgaaa aagataagtt
    19801 gtttaaatgc ggaaaggggt gagtagcatc aacagctatt ggaacaataa caggaaaaat
    19861 attggagaaa aaatactcat cacatttttg ttttaaattt tcatctaaat tttcataatg
    19921 ttttatgaaa agattttctt tttctaattc acttgtgatt tcattaaaat aacgctccaa
    19981 aagctctttt tcttgatgta agtatttgcg tatggctttt aattgttgta acggggtcat
    20041 ttcatcgcta ctgcttgcat taactccagc tgaaaaaagt tgttttaagc ctgcgacgcg
    20101 tatcatataa aattcatcta aattagtgca atatatagct ataaatttta atttttctaa
    20161 caagggtaaa tttttagaac attggtctaa aacacgagaa ttaaagcgaa gccaagaaag
    20221 ttcgcgattg ataaacatat caggacttgt ttgcattaat ttttcctttt ttagttgtat
    20281 tttatc
//
LOCUS       DBBXPZ010000181        18154 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate CA21CH-0337-5-4
            SAMN37598888-rid24034473.guided.032, whole genome shotgun sequence.
ACCESSION   DBBXPZ010000181 DBBXPZ010000000
VERSION     DBBXPZ010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN37598888
            Sequence Read Archive: SRR26214811
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18154)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18154)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-NOV-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002477325.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002477325.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/20/2024 01:07:19
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,840
            CDSs (total)                      :: 1,796
            Genes (coding)                    :: 1,735
            CDSs (with protein)               :: 1,735
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 49 of 61
            Pseudo Genes (incomplete)         :: 10 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18154
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN37598888-rid24034473.guided.032"
                     /isolate="CA21CH-0337-5-4"
                     /isolation_source="Retail chicken"
                     /db_xref="taxon:197"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.6293 N 1.2979 E"
                     /collection_date="2021-08-13"
                     /collected_by="Quadram Institute Bioscience"
     gene            complement(<1..209)
                     /locus_tag="ACJFD7_001822"
     CDS             complement(<1..209)
                     /locus_tag="ACJFD7_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HGG0860584.1"
                     /translation="MEKLKNFLSLKNIEDTQIYKELKCAKNEALILRELCRNYVVSIS
                     SINAFTLLSTIFGNDKYLYLDALED"
     gene            complement(209..1033)
                     /locus_tag="ACJFD7_001823"
     CDS             complement(209..1033)
                     /locus_tag="ACJFD7_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860585.1"
                     /translation="MKFFLLVFCFVNLVLAQVYKGELYFYHLQDKEIFAIVYDNTPMT
                     PLFDRDKNQTSSSFLIVDDINGNLEIPLFKTNDFWQDEHKKYKINSSKMLTYDNKNFQ
                     GENLGTTTLELVETQDGIRIKRSLDFIGFKDDFKEFHPVHKGVFSFEQIRQKPIFLQD
                     GKISFEEWYYFYEDGMSRAILELNNFVYDINAHAFVKLNDLYNTENQKFQNLLHEKLK
                     NTCDECFEDLQNLQFNNNFLLNNGKLKICYLPFEGHFLDENICVEFNEDELKEFKK"
     gene            complement(1044..1520)
                     /locus_tag="ACJFD7_001824"
     CDS             complement(1044..1520)
                     /locus_tag="ACJFD7_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HGG0860586.1"
                     /translation="MKHCLALCFIFFLCACSAKNQNFSSQSLMVLIASPMIKINDAAF
                     LKKENNALNLEVYKLGQAFFELKIKDKICINAVCYDKQVFNQKFFKNVYYDDILNDIL
                     KANPLWQGRNLEKTDCGFEQNLKAKNYEIFYYVCDNKVSFFDKISHTKIILTHIQN"
     gene            complement(1529..2020)
                     /locus_tag="ACJFD7_001825"
     CDS             complement(1529..2020)
                     /locus_tag="ACJFD7_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HGG0860587.1"
                     /translation="MASEHSFDISAALDKQELKNAFEQAKKELDSRYDLKGIKCEIDL
                     SEKESIFKLSSSSEGKLDVLKDIVISKLIKRGINPNAIKELSRESGAMFRLNLKANDA
                     IDSENAKKINKAIKDSKLKVNSSIRGEEIRVVAKQIDDLQAVMKLVKELDLELNVSFK
                     NLK"
     gene            complement(2010..2945)
                     /locus_tag="ACJFD7_001826"
     CDS             complement(2010..2945)
                     /locus_tag="ACJFD7_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HGG0860588.1"
                     /translation="MKIVCLDAATLGDYDLSVFEKFGSLQIYTTTNKEQTIERLKDAN
                     VAMTNKVVIDKDVIDACKNLKLILETATGVNNIDIEYAKEKGIIVKNAAGYSTMSVVQ
                     HTFAFMFAFLNQVLYYDKWSKEGKWCESPIFTDYSRILNTLSGKKHGIIGLGTIGKEV
                     AKISKAFGAEIYYYSTSGANKNADFVHLELKDLLKTCDIISIHAPLNEKTKNLLAFEE
                     LKLLKDNAILINVGRGGIVNENDLAKIIDEKNIRVGLDVLEIEPMMKNHPLLSIKNKE
                     NLIITPHVAWASKEALNALMDIVYNNLKEWIENGK"
     gene            complement(2948..4117)
                     /locus_tag="ACJFD7_001827"
     CDS             complement(2948..4117)
                     /locus_tag="ACJFD7_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HGG0860589.1"
                     /translation="MQLLQVDKLQKDYLENIGFSWHTDEDGSDYISNKLVCVKESEAN
                     AYYEAVNELYDMFIAAAQEVIDNDRFDELGIPFNLIDAIKMSWENEVHWHLYGRFDLA
                     GGLDGKPIKLIEFNADTPTALFESAILQWALLKQNGMDESAQFNSIYESLMDNFKRLI
                     TLDESVEGFEEHYQGWKILFSSVAGSKEEEITTKLLSHIANEAGFQTNFSFVDEVEFS
                     EEGIFKEGENYEYWFKLIPWEDIAIEEGELAMLLTQIMRNQRAIILNPAYTLLFQSKG
                     ILKILWELYPNHPLLLETKDTPLEGKNYVKKPVFGREGANISIIKDGKTLHENVGPYG
                     NNKAIYQEYVEFNSCENEYYQAGVFFAYEGCGLGFRKGGLVLDNYSKFVGHIIKD"
     gene            complement(4127..4732)
                     /locus_tag="ACJFD7_001828"
     CDS             complement(4127..4732)
                     /locus_tag="ACJFD7_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0323 family lipoprotein"
                     /protein_id="HGG0860590.1"
                     /translation="MKKIKKIIQIGMIGGLAAVAGGALAGCGSNNDNADTLNQAANAQ
                     GAFVIIEETAPGQYKIKDQYPSDETRVVLKDLNGTERILSKEEMDALIKEEAAKIDNG
                     TSNLTKDNGQISSGGLSLGETLLASAAGAILGSWIGSKLFNNQNFANQQRGAFSNQSA
                     YQRSVNSFNKAGTTSSASSAKKSGFFGGGSKAVSSSSSFGS"
     gene            complement(4853..5065)
                     /gene="rpsU"
                     /locus_tag="ACJFD7_001829"
     CDS             complement(4853..5065)
                     /gene="rpsU"
                     /locus_tag="ACJFD7_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HGG0860591.1"
                     /translation="MPGIKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEI
                     RKKQKISARKKMLKRLYMLRRYESRL"
     gene            5226..6602
                     /gene="ccoG"
                     /locus_tag="ACJFD7_001830"
     CDS             5226..6602
                     /gene="ccoG"
                     /locus_tag="ACJFD7_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HGG0860592.1"
                     /translation="MQGHITNYTKKRYFVYLIASIIIFALPFIRINENHFFLLSFDHS
                     KLNLFFISFSTQEFYLMPFVLIFLFLFIFFITTLGGRIWCAWSCPQTIFRVIYRDIIQ
                     TKFLKIRKNINNKQKEYEGQYFKKFLGVIIFYFISLVAVSNLLWYFIPPEDFFNYIQN
                     PGEHLLLLGILFCASLLFTLDITYLQEKFCVYVCPYARIQSVMFDHDTMQVIYDEKRG
                     GLIYDGHTKLHKKPPEGECIGCEACVSICPTHIDIRKGMQLECINCLECADACSKVQS
                     KFNRPSLINWTSAKAIETRSKVHYLRFRTIAYFIVLLIALLALIIMGSKKESMLLNIN
                     RSSELYNISNVKGELVISNAYTFLFQNTDSKPHEYYFTANLEGINDGIEIIRPNKPFK
                     LKAGEQVKKIVVIRATKNLANNDKKDVIFPLHIKAYAKDNEKISVFRKSIFVYPKSTL
                     IKDKNELK"
     gene            6589..7221
                     /gene="cmeR"
                     /locus_tag="ACJFD7_001831"
     CDS             6589..7221
                     /gene="cmeR"
                     /locus_tag="ACJFD7_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     regulator CmeR"
                     /protein_id="HGG0860593.1"
                     /translation="MNSNRTPSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSG
                     GSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIENGTLKEILTSFGLAFIEI
                     FNQPEAVAFGKIIYSQVYDKDRHLANWIENNQQNFSYNILMDFFKQQNNSYMKKNAEK
                     LAVLFCTMLKEPYHHLNVLINARLKNKKEQKEHVEFVVNVFLNGINSSKA"
     gene            7316..8419
                     /gene="cmeA"
                     /locus_tag="ACJFD7_001832"
     CDS             7316..8419
                     /gene="cmeA"
                     /locus_tag="ACJFD7_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeA"
                     /protein_id="HGG0860594.1"
                     /translation="MKLFQKNTILALGVVLLLTACSKEEVPKIQMPPQPVTTMSAKSE
                     DLPLSFTYPAKLVSDYDVIIKPQVSGVIENKLFKAGDKVKKGQTLFIIEQDKFKASVD
                     SAYGQALMAKATFENASKDFNRSKALFSKSAISQKEYDSSLATFNNSKASLASARAQL
                     ANARIDLDHTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDK
                     LNLVRNTQSGKWDLDSIHANLNLNGETVQGKLYFIDSVIDANSGTVKAKAIFDNNNST
                     LLPGAFATITSEGFIQKNGFKVPQIAVKQNQNDVYVLLFKNGKVEKSSVHISYQNNEY
                     AIIDKGLQNGDKIILDNFKKIQVGSEVKEIGAQ"
     gene            8419..11541
                     /gene="cmeB"
                     /locus_tag="ACJFD7_001833"
     CDS             8419..11541
                     /gene="cmeB"
                     /locus_tag="ACJFD7_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HGG0860595.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGAIGLTNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSI
                     NLLTLFALILAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVL
                     VLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPF
                     KFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPNSLVPEED
                     QGLMISIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLKDWKDRNVSADEIAMELNKKFAFDRNASSIFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDEIQKDVNKLVTAANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDV
                     FNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQDTLKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSG
                     SAYQEVSSKGTASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLVGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKRGKVHE"
     gene            11534..13012
                     /gene="cmeC"
                     /locus_tag="ACJFD7_001834"
     CDS             11534..13012
                     /gene="cmeC"
                     /locus_tag="ACJFD7_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HGG0860596.1"
                     /translation="MNKIISISTIASFTLLISACSLSPNLNIPEANYSIDNKLGALSW
                     EKENNSSIAKNWWKDFDDENLNKVVDLALKNNNDLKLAFIHMEQAAAQLGIDFSSLLP
                     KFDGSASGSRAKTAINAPSNRTGEVSYGNDFKMGLNLSYEIDLWGKYRDTYRASKSGF
                     KASEYDYEAARLSVISNTVQTYFNLVNAYENENVLKETYESAKEIYRINDEKFQVGAV
                     GEYELAQARANLESMALQYNEAKLNKENYLKALKILTSNDLNDILYKNQSYQVFNLKE
                     FDIPTGISSTILLQRPDIGSFLEKLTQQNYLVGVARTTFLPSLSLTGLLGFESGDLDT
                     LVKGGSKTWNIGGNFTLPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLITAFGEIRYAL
                     VARKTIRLQYDNAQASEQSYKRIYEIAKERYDIGEMSLQDYLEARQNWLNAAVAFNNI
                     KYSYANSIVDVIKAFGGGFEQSEDTSKNIKEESKNLDMSFRE"
     gene            complement(13035..13286)
                     /gene="cmeU"
                     /locus_tag="ACJFD7_001835"
     CDS             complement(13035..13286)
                     /gene="cmeU"
                     /locus_tag="ACJFD7_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CmeU family protein"
                     /protein_id="HGG0860597.1"
                     /translation="MDKAKIVQNLNALFKQRAEFYSYFDENIAKINDTEVFDFKNAKN
                     LNPEEVYKQFYHFDYAIRKLLPAIYKAYEITDADLDKDF"
     gene            13414..14760
                     /locus_tag="ACJFD7_001836"
     CDS             13414..14760
                     /locus_tag="ACJFD7_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HGG0860598.1"
                     /translation="MNLFQNLALKYSHTMMEKSLQKGFNVELLKQPEEKIPKQDKSYM
                     LYAHVPFCHTFCPYCSFHKYYYDENLAKVYFQNLREEIKIMKNKGFDFTSMYVGGGTT
                     LIDEEELLKTLELCKKLFNIKEISCESDPNHIDPNKLSMFKGIIDRLSCGIQSFDDET
                     LKKVARYNKFGSSKELQEKISKALGILPIFSIDLIFNLPGQNEKQLLNDLEIAKNLAP
                     QQITTYPLMKSNLTKDNIAKSLGVSIKDNEFTYYQIIREFFKDYTQNNGWSFSLEKNK
                     LNDEYVSSHHEYLGVGSGAFSFLDGELLINAFNLNDYAKFIQEKQNANIAKACFDKKE
                     IIKYVFLTEIFSGKIEIDKFNKTLNCNLEKELFIELLGLKTSGAIIKDQNALIATEFG
                     QYLFVVLMKDFYTGMDLVRAVFRDDKRLKNKDYIDIMKENIDPLNSASMEFKAETN"
     gene            complement(14757..15209)
                     /gene="hemJ"
                     /locus_tag="ACJFD7_001837"
     CDS             complement(14757..15209)
                     /gene="hemJ"
                     /locus_tag="ACJFD7_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HGG0860599.1"
                     /translation="MTEWINDYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAEHKDNK
                     GFVEVVKIQERKLYYYIQTPAMIVTLITGSLMLHAHKEVLMVGAGFMHVKLTCVTLLI
                     IFHIHNYYCLKALANDTSTKSGKYFRIYNEFPTIMFIIIALMMVVRPF"
     gene            complement(15193..15663)
                     /gene="lspA"
                     /locus_tag="ACJFD7_001838"
     CDS             complement(15193..15663)
                     /gene="lspA"
                     /locus_tag="ACJFD7_001838"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HGG0860600.1"
                     /translation="MAKTFKFIFYFWGAFVLVFALDQWVKSLTLAGFRWQSEYLDLTY
                     ALNTGVAFSMLSFLEHNLKYLHLALIGVLFIYLFWQRTLLKTHSIAFGMMLGAGVSNL
                     LDRFIHGGVVDMFFWHKWFNFAIFNVADVMINISVALILIQEIFKKRKKDDRMD"
     gene            complement(15656..16993)
                     /gene="glmM"
                     /locus_tag="ACJFD7_001839"
     CDS             complement(15656..16993)
                     /gene="glmM"
                     /locus_tag="ACJFD7_001839"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HGG0860601.1"
                     /translation="MRLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSITNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYFDDKLIQASKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALYPVNLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALYLKEQGK
                     LQSSVVATIMSNGALKEFLNKHGIELDTCNVGDKYVLEKLKANGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLSKKKSASSILGQVKPYPQLLINLKIAEKKDLDKIKGLK
                     ELKKDLENKNINTLFRYSGTENLIRLLLEARDIKLLEKEMKNVVEFFKKALNG"
     gene            complement(17087..18112)
                     /locus_tag="ACJFD7_001840"
     CDS             complement(17087..18112)
                     /locus_tag="ACJFD7_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HGG0860602.1"
                     /translation="MKVKALLIASLVAFSSLNAASLIDEAKNSGLVALPKDQKGVDEI
                     LKQNGVKASEFTLEKAELGKKLYFEPRLSKSGIISCNTCHNVGLGGTDGVSTAIGHKW
                     TANPHHLNSPTVYNAVLNNTQFWDGRAGTLADQAKGPIQADPEMATPAKLAVEKISSL
                     PEYVSEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDKFLEGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDANGMVKTPTLRNVAETAP
                     YFHNGAIWNLKDAIKEMGSVQLGIKISDKEAKSIETFLKSLTGTKPAIVYPQLPISTE
                     KTPKPEL"
BASE COUNT         6421 a         3007 c         2502 g         6224 t
ORIGIN      
        1 aaatcctcca aagcatcaag ataaagatac ttatcatttc caaaaattgt cgataataaa
       61 gtaaaggcat tgatagaaga aatagaaacg acataatttc tacaaagctc tctaagaatc
      121 aaagcctcat ttttagcaca cttaagctct ttataaattt gagtatcttc tatatttttc
      181 aaacttaaaa aattttttaa tttttccatt attttttaaa ttccttaagc tcatcttcgt
      241 taaattctac gcaaatattt tcatctaaaa aatgaccttc aaaaggtaga taacaaattt
      301 ttagttttcc attattaagc aaaaaattat tattaaattg taaattttgc agatcttcaa
      361 aacactcatc acatgtattt ttaagcttct catgtaaaag attttgaaat ttttgatttt
      421 cagtattata caaatcattt agttttacaa acgcgtgagc attaatatca taaacaaaat
      481 tatttaactc taaaatagca cgactcatac catcttcata aaaataatac cattcttcaa
      541 aactaatttt tccatcttgt aaaaaaatag gtttttggcg aatttgttca aaactaaata
      601 cacccttatg aacaggatga aattctttaa aatcatcctt aaaacctata aaatcaagac
      661 tacgctttat gcgaatacca tcttgcgttt caacaagttc taaagtagtt gttcctaaat
      721 tttctccttg aaaattttta ttatcatatg taagcatttt agaagaattg attttatatt
      781 ttttatgctc atcctgccaa aaatcatttg tcttaaagag tggaatctct aaatttccat
      841 ttatatcatc aacaattaaa aaactagaac ttgtttgatt tttatccctg tcaaaaagtg
      901 gagtcatagg tgtattatca taaactatgg caaaaatttc tttatcctgc aaatgataaa
      961 aatacaattc acctttataa acttgcgcta aaactagatt tacaaagcaa aataccagta
     1021 aaaaaaattt caaactctat ccttcaattt tgaatatgcg ttaagataat tttagtatgt
     1081 gaaattttat caaaaaaact tactttatta tcacaaacat aataaaaaat ttcataattt
     1141 tttgctttta aattttgttc aaaaccacaa tcagtttttt ctaaatttct accttgccat
     1201 aaaggatttg cctttaaaat atcatttaaa atatcatcat aatatacatt tttaaaaaat
     1261 ttttgattaa acacttgttt atcataacac actgcattga tgcaaatttt atctttgatt
     1321 ttgagttcaa aaaaagcttg ccctagttta taaacttcta aatttaaagc attattttct
     1381 ttttttaaaa aagctgcatc attgattttt atcataggag aagcaatcaa aaccatcaag
     1441 ctttgacttg aaaaattttg atttttcgca ctacaagcgc aaagaaaaaa aataaaacat
     1501 agagctaaac aatgtttcaa atttgacctt atttgagatt tttaaaactg acatttaact
     1561 ctaaatcaag ctcttttaca agcttcatca cagcttgtaa atcatcgatt tgttttgcta
     1621 caacacgaat ttcttcacca cgaatcgaag agttaacttt aagcttgcta tctttgatag
     1681 ctttattgat ttttttagca ttttcactat caatagcatc gtttgctttc aaatttaaac
     1741 gaaacattgc tccactttca cgagaaagct ctttaatagc attaggatta attcctcttt
     1801 tgataagttt agaaatcact atatctttta aaacatcaag ctttccttca ctagaagaac
     1861 tgagtttaaa aatactctct ttttcgctta aatcaatctc acacttaatt ccttttaagt
     1921 cataacgact atcaagttct tttttagctt gttcaaaagc attttttaac tcttgtttat
     1981 ctaaagctgc tgaaatatca aaactatgtt cacttgccat tttctatcca ttcttttaaa
     2041 ttattataaa ctatatccat taaagcattt aaagcctcct tgctcgccca cgcaacatga
     2101 ggagtgataa taagattttc tttattttta atgcttaaaa gtggatgatt tttcatcata
     2161 ggttcaattt ctaaaacatc aagccctaca cgaatatttt tttcatctat gattttagct
     2221 aaatcatttt cattgacaat cccacctctt cctacattaa tcaaaatcgc attatctttt
     2281 aaaagcttta attcttcaaa ggcgagtaaa tttttggttt tttcatttaa aggtgcgtgg
     2341 atacttataa tatcgcaagt ttttaataaa tcttttaatt ccaaatgtac aaaatctgcg
     2401 tttttattag ctccactcgt agaataataa taaatttcgg ctccaaaagc ctttgaaatt
     2461 tttgccactt ctttacctat ggttcctaaa cctataatac catgtttttt accacttaag
     2521 gtgtttaaaa ttctactata atctgtaaaa ataggacttt cacaccattt accctctttg
     2581 ctccatttgt cataataaag cacttgattt aaaaaagcaa acataaatgc aaaagtatgt
     2641 tgcaccacac tcatagtaga atacccagca gcatttttta caataatacc tttttcttta
     2701 gcatactcaa tatcgatatt attaacccct gtagcagttt ccaaaatgag ttttaaattt
     2761 ttacaagcat caatcacatc tttatcaatt acaaccttgt ttgtcatggc gacattagca
     2821 tcttttaaac gctctatggt ttgctcttta tttgttgtgg tataaatttg caaagaacca
     2881 aatttttcaa aaacacttaa atcataatcc cctaaagttg ccgcatctaa acaaacaatt
     2941 ttcatttcta atcctttata atatgtccta caaatttaga ataattatca agcacaagtc
     3001 ctccttttct aaatcctaag ccacaccctt cataagcaaa gaaaacacct gcttgatagt
     3061 attcgttttc acatgaatta aactctacat attcttgata aatagcctta ttattcccat
     3121 aaggacctac attctcatgc aaagtttttc catctttaat tatactgata tttgcgcctt
     3181 ctctaccaaa aacaggtttt ttaacatagt ttttaccctc taaaggagta tcttttgttt
     3241 ctaaaagtaa tggatgattt ggataaagtt cccatagaat ttttaaaatt cccttagatt
     3301 gaaataaaag cgtataagca ggatttaaaa taattgctct ttgattacgc atgatttgag
     3361 ttaaaagcat ggcaagttca ccctcttcta tagctatatc ttcccaagga ataagcttaa
     3421 accaatactc ataattttcg ccctctttaa aaataccctc ttcgctaaat tccacctcat
     3481 ccacaaagga aaaattagtt tgaaaacctg cttcattggc tatatgagaa agtaattttg
     3541 tagtgatttc ttcttcttta cttcctgcaa cacttgaaaa aagaattttc catccttgat
     3601 aatgctcttc aaacccttca acactttcat caagagtaat aagtctttta aaattatcca
     3661 tcaaactttc ataaatacta ttaaactgtg cgctttcatc cattccattt tgttttaaaa
     3721 gtgcccattg taaaatcgca ctttcaaaaa gagcagtagg ggtatcagca ttaaattcta
     3781 taagttttat aggcttgcca tcaagtccac ccgctaaatc aaaacgccca tataaatgcc
     3841 aatgaacctc attttcccaa ctcatcttaa ttgcatcaat aagattaaaa ggaattccaa
     3901 gctcatcaaa acgatcatta tcaatcactt cttgtgctgc agcaataaac atatcataaa
     3961 gctcattcac cgcttcataa taagcattag cttcactttc cttaacacaa actaacttat
     4021 tgctaatata atcacttcca tcttcatctg tatgccaaga aaaacctata ttttctaaat
     4081 aatctttttg aagtttgtct acttgtaata attgcattat ttatccttaa gaaccaaaag
     4141 aagaactaga acttacagct ttagagcctc cgccaaaaaa gcctgatttt ttagcacttg
     4201 aagcagagct tgttgtgcct gctttattaa aactattaac actcctttga taagcacttt
     4261 gatttgaaaa agcaccgcgt tgttggttgg caaaattttg attattgaaa agttttgaac
     4321 ctatccaact tcctaaaata gcacctgcag cacttgcgag taaagtttcc cctaaactca
     4381 atcccccact actgatttgt ccattgtctt tagttaaatt tgaagttcca ttatcaattt
     4441 tagctgcttc ttctttaatc aaagcatcca tttcttcttt ggataaaatt ctttctgtgc
     4501 cattaagatc ttttaaaact acccttgttt catcacttgg atattgatct ttgattttat
     4561 actgccctgg agctgtttct tcgataatta caaaagctcc ttgagcatta gctgcttgat
     4621 ttaaagtatc tgcattgtca ttattacttc cacaacctgc taaagcacct ccagcaacag
     4681 ctgctaaacc acctatcata ccaatttgaa tgattttttt gatttttttc ataagtttat
     4741 cctaaaaaca gaaaatttaa attagaaatt ttaacaaaaa ataataaata ctttttaatt
     4801 taataccaaa tgaagtttgt agatataaaa aaagcccttt cgggcttttg ggttagagtc
     4861 ttgactcgta gcgtctaagc atataaagtc ttttaagcat ttttttgcgt gctgaaattt
     4921 tttgtttttt gcgaatttca gtcataggct caaaaaatct tcttgctctt acttcagtca
     4981 caactagatt tctatctact tgttttttga atttacgata tgcttcatca aaagactcgt
     5041 taggatgcac cttgattcct ggcacagtcc tcaccacctt tctgtgtaaa tttttgttgt
     5101 gaaatataat tataaaacac ttcttattaa ttctaactta gaaagcattt aaaaattgtt
     5161 ttagttttta tcggttataa tccttaatta caaagtacta aaaaattata atttaaggtc
     5221 taaaaatgca aggacacatt acaaactata caaaaaaacg atattttgta tatttaattg
     5281 caagtattat catatttgcc ctacctttca taagaattaa tgagaatcat ttttttcttt
     5341 taagttttga tcattctaaa ttaaacctat tttttatttc tttttcaaca caagaatttt
     5401 atctcatgcc ttttgttctt atatttcttt ttttatttat tttttttatt acaactttag
     5461 gtggaagaat ttggtgtgct tggagttgtc cacaaacgat ttttagagtt atatatagag
     5521 atatcataca aactaaattt cttaaaattc gcaaaaatat caataacaaa caaaaagaat
     5581 atgagggaca atattttaaa aaatttcttg gagtaataat tttttatttt atatctttag
     5641 ttgctgttag taatttactt tggtacttta ttcctcctga agattttttc aattatattc
     5701 aaaatcctgg cgagcatcta cttttacttg gaattttatt ttgtgctagc ttacttttta
     5761 ctttggatat tacctattta caagaaaaat tttgtgttta tgtctgtcct tatgcaagaa
     5821 tacaatctgt aatgttcgat catgatacaa tgcaagtgat ctacgatgaa aaacgcgggg
     5881 gcttgatcta tgatggacac accaaacttc ataaaaaacc gcctgaggga gaatgcatag
     5941 gttgcgaagc ctgtgttagc atctgtccaa ctcatattga catacgcaaa ggaatgcaac
     6001 ttgaatgtat taattgtctt gaatgtgccg atgcttgctc taaggttcaa agcaaattta
     6061 atcgtccaag tttgatcaat tggacaagtg caaaagctat tgaaacgcgt tctaaggttc
     6121 attatttaag atttagaacg atagcatatt ttatagttct tctaattgct ttactggctt
     6181 taatcatcat gggaagcaaa aaagaaagca tgcttttaaa tatcaatcgt agtagtgaat
     6241 tatataatat ttcaaatgtt aaaggtgaat tagtcatttc aaatgcttat acctttttgt
     6301 ttcaaaatac agattctaaa cctcatgaat attattttac agcaaattta gaaggaataa
     6361 atgatggaat tgaaatcata agaccaaaca aaccttttaa attaaaagca ggagaacaag
     6421 tcaaaaaaat agttgttatc agggctacaa aaaatttagc aaataatgat aaaaaagacg
     6481 taatctttcc tttacatata aaagcttacg caaaggataa tgaaaaaatt tctgttttta
     6541 gaaaaagtat atttgtatac cctaaaagca ctcttataaa ggataaaaat gaactcaaat
     6601 agaacaccat cacaaaaagt tttagccaga caagaaaaaa tcaaagcagt ggccttagag
     6661 ctttttttaa caaaaggata ccaagaaaca agtttgagtg atattattaa attatctgga
     6721 ggatcttatt ctaatattta tgatggtttt aaaagtaaag aagggctatt ctttgaaatt
     6781 ttagatgaca tatgtaaaaa acactttcat cttatttatt ccaaaacaca agaaattgaa
     6841 aatggcactt taaaagaaat tttaacttct tttggtttag cttttataga aattttcaat
     6901 caaccagaag ctgtagcttt tggtaaaatt atctattctc aagtttatga caaagataga
     6961 catcttgcca attggataga aaacaatcaa caaaattttt cctataacat acttatggat
     7021 tttttcaagc aacaaaataa ttcttatatg aaaaaaaatg cagaaaaact tgctgttctt
     7081 ttttgcacta tgttaaaaga accttatcat catcttaatg ttttaattaa tgctcgttta
     7141 aaaaataaaa aagaacaaaa agaacatgtt gaatttgttg taaatgtttt tctaaatgga
     7201 atcaatagct ccaaagctta aaaaataatt ttattaacca aaattaagat ataattagcc
     7261 aaaaattttt gtaataaaaa ttacaatttt taatttaatt tttcaaggca aaaccatgaa
     7321 attatttcaa aaaaatacta ttttagcttt aggtgttgtg cttttactca ctgcttgcag
     7381 caaagaagaa gtaccaaaaa tacaaatgcc gcctcaacct gtaacaacca tgagtgctaa
     7441 atctgaagat ttaccactta gttttactta ccctgctaaa cttgtcagtg attatgatgt
     7501 cattataaaa cctcaagtta gtggcgtaat agaaaataaa ctttttaaag ctggagataa
     7561 agtaaaaaaa ggacaaacat tatttattat agaacaagat aaatttaaag ctagtgttga
     7621 ttcggcttac ggacaagctt tgatggctaa ggcaactttc gaaaatgcaa gcaaggattt
     7681 taatcgttct aaagctcttt ttagtaaaag tgcaatctct caaaaggaat acgactcttc
     7741 tcttgctaca tttaacaatt caaaagctag tctagcaagt gctagagcac agcttgcaaa
     7801 tgcaagaatt gatctagatc ataccgaaat aaaagctcct tttgatggta ctataggaga
     7861 tgctttagtt aatataggag attatgtaag tgcttcaaca actgaactag ttagagttac
     7921 aaatttaaat cctatttacg cagatttctt tatttcagat acagataaac taaatttagt
     7981 ccgcaatact caaagtggaa aatgggattt agacagcatt catgcaaatt taaatcttaa
     8041 tggagaaacc gttcaaggca aactttattt tattgattct gttatagatg ctaatagtgg
     8101 aacagtaaaa gccaaagcta tatttgacaa caacaactca acacttttac caggtgcttt
     8161 tgcaacaatt acttcagaag gttttataca aaaaaatggc tttaaagtgc ctcaaatagc
     8221 tgttaaacaa aatcaaaatg atgtttatgt tcttcttttt aaaaatggaa aagtagaaaa
     8281 atcttctgta catataagct accaaaacaa tgaatatgcc attattgaca aaggattgca
     8341 aaatggcgat aaaatcattt tagataactt taaaaaaatt caagttggta gcgaagttaa
     8401 agaaattgga gcacaataat gttttctaaa ttttttatcg aaagacctgt ttttgcttca
     8461 gttgttgcaa ttatcatttc tttagctgga gccataggtc ttacaaattt acctatagaa
     8521 caatatcctt ctttaacccc tcctacagtt aaagtaagtg caacttacac aggagctgat
     8581 gcacaaacca ttgcttcaac agttgcaagt cctatcgaag atgcaatcaa tggcgcagat
     8641 aatatgattt acatggattc aacttcaagt tcttcaggaa ctatgagttt gactgtttat
     8701 tttgatatcg gtacagatcc tgatcaagcc accatagatg ttaataatag aatttcagcc
     8761 gcaactgcaa aaatgccaga tgcagttaaa aaacttggag taacagttag aaaaacttcc
     8821 tcaacaacac ttgctgcaat ttctatgtat tcaagtgatg gctcaatgag tgcagtagat
     8881 gtatataact atatcacttt aaatgtttta gatgagttaa aaagggttcc aggagttgga
     8941 gatgcaaacg ctataggaaa tcgtaattat tctttaagaa tttggctcaa gcctgattta
     9001 ttaaataaat ttggaatcac agctactgat gtaatttctg cggttaatga ccaaaatgcc
     9061 caatacgcaa ctggtaaaat tggcgaagaa cctgtaaccc aaaaatcccc ttatgtttat
     9121 tcaatcacta tgcaaggaag actacaaaat cctagtgaat ttgaaaacat tattttaaga
     9181 acaaataatg atggatcatt tttaagactt aaagatgtag ctgatgtgga aataggatca
     9241 caacaataca gctcacaagg acgattaaat ggcaatgatg cagttccaat tatgatcaat
     9301 cttcaatcag gggcaaacgc attgcataca gcagaacttg ttcaagctaa aatgcaagaa
     9361 ctttcaaaaa attttccaaa aggtttaaca tataaaattc cttacgatac aacaaaattt
     9421 gtaatagaat caatcaaaga agttgttaaa acttttgttg aagctctaat tttagttatc
     9481 attgttatgt atatgttctt aaagaatttc cgtgcaacac ttattcctat gatagctgta
     9541 cctgtttcat tgttaggaac ttttgctgga ctttatgttt taggttttag tattaacttg
     9601 cttacgcttt ttgctttaat tttagccata gggatcgttg tagatgatgc gattatagtt
     9661 gtagaaaata ttgataggat tttacatgaa aatgagcaaa taagcgtaaa agatgctgct
     9721 atccaagcga tgcaagaagt tagctctccg gttatttcaa ttgttcttgt gctttgtgct
     9781 gtttttgtac cagtttcttt tatatcaggt tttgttggag agattcaaag acaatttgct
     9841 cttaccttag ctatatctgt aaccatatca ggttttgttg ctcttacctt aacaccttct
     9901 ttatgtgcac tctttttgcg acgcaatgaa ggagagccat ttaaatttgt aaagaaattt
     9961 aatgattttt ttgattggag tacctctgta tttagcgcag gagtagcata tatcctaaaa
    10021 agaaccattc gttttgtttt aattttttgt attatgcttg gagcaatttt ttatctctat
    10081 aaagcagtac caaattcttt agttcctgaa gaagatcaag gtttgatgat tagcattatt
    10141 aatcttcctt cagcttcagc actccataga acaatttcag aggttgatca cataagccaa
    10201 gaagttttaa aaactaatgg agttaaagat gcaatggcta tgataggatt tgatcttttt
    10261 acaagttcac tcaaagaaaa tgccgctgca atgtttatag gcttgaaaga ttggaaagat
    10321 agaaatgtga gtgctgatga aatcgccatg gagcttaata aaaaatttgc ttttgatcgc
    10381 aatgcttcaa gtatatttat aggcttacct cctatacctg gattaagtat cacaggcggt
    10441 tttgaaatgt atgttcaaaa caaaagcgga aaaagctatg atgaaataca aaaagatgta
    10501 aataaacttg ttactgcggc caaccaaaga aaagaactat caagagtaag aacaacactt
    10561 gatacaactt tccctcaata caagcttata attgatagag ataaattaaa acactacaat
    10621 cttaacatgc aagatgtttt taacacgatg aatgcaacta taggcactta ttatgttaat
    10681 gatttttcta tgctaggtaa aaatttccaa gtaaatatcc gcgcaaaagg tgattttaga
    10741 aatacacaag atacattaaa aaatattttt gtaagatcaa atgatggaaa aatgatacca
    10801 cttgattctt tcttaacttt acaaagaagt tcagggcctg atgatgtaaa acgattcaac
    10861 cttttcccag cagcacaagt tcaaggtcaa cccgcaccag gttatacttc aggtcaagct
    10921 atagaagcga ttgctcaagt agcaaaagaa actttagggg atgattattc catagcttgg
    10981 agtggatcag cttatcaaga agtttctagt aaaggaacag caagttatgc ttttgcttta
    11041 ggtatgatat ttgtcttttt aattctagct gctcaatatg aaagatggct tataccttta
    11101 gcagtcgtaa cagctgtacc ttttgcggta tttggatcat ttttattggt atatttaaga
    11161 ggatttagca atgatatata ttttcaaaca ggacttttgc tcttgattgg actttcagct
    11221 aaaaatgcta tcttaatcgt agaatttgca atggaagagc gctttaaaaa aggtaaagga
    11281 gtttttgaag cagctgttgc agcagcaaaa cttcgttttc gtcctatcat aatgacttct
    11341 ttggcattta cttttggggt cttaccaatg attttcgcaa caggagcagg aagtgcttca
    11401 agacactctt taggaacagg gcttgttggt ggaatgatcg cagcatcaac tttagcgata
    11461 ttcttcgtgc ctttattttt ctatctttta gaaaatttta atgaatggct agataaaaaa
    11521 agaggtaagg ttcatgaata aaataatttc aattagcact atagcaagtt ttactctttt
    11581 gatttcagct tgctctttaa gtccaaattt aaatattccc gaagcaaact atagcattga
    11641 taataagctt ggagccttat cctgggaaaa agaaaacaat agctctatcg caaaaaattg
    11701 gtggaaagat tttgatgatg aaaatttaaa taaagtggtt gatttagcac ttaaaaataa
    11761 taatgattta aaacttgcct tcatacacat ggaacaagct gctgctcaat taggtataga
    11821 ttttagcagt ttgttgccaa aatttgatgg tagtgcaagc ggaagtcgtg caaaaacagc
    11881 tataaatgct ccaagcaatc gaactgggga agtaagttac ggtaatgatt ttaaaatggg
    11941 acttaattta agctatgaaa tcgatctttg gggaaaatat cgcgatacat atcgcgcctc
    12001 aaaatcaggc tttaaagcaa gtgagtatga ttatgaagct gcaagacttt ctgttatttc
    12061 aaatacagtt caaacttatt ttaatcttgt aaatgcttat gaaaatgaaa atgttcttaa
    12121 agaaacctat gaatcggcaa aagaaattta taggattaat gatgaaaaat ttcaagttgg
    12181 tgctgtaggt gaatatgaac ttgctcaagc aagagccaac ttagaaagta tggctttgca
    12241 atataatgaa gcaaagttaa ataaagaaaa ttaccttaaa gctttaaaaa ttttaacttc
    12301 aaatgattta aatgacatac tttacaaaaa tcaaagctat caagttttta atcttaaaga
    12361 atttgacatt ccaactggaa tttcaagtac catcttgctt caacgtccag atattggctc
    12421 ttttttagaa aaattaactc agcaaaatta tcttgttgga gtagctcgca cgactttctt
    12481 acctagcctt tctttaacag gattattggg atttgaaagc ggggatttag ataccttggt
    12541 taaaggaggt tctaagactt ggaatatagg tggaaacttt actctgccta tttttcattg
    12601 gggtgaaatt taccaaaatg taaatttagc caagcttaat aaagatgaag cttttgtaaa
    12661 ttatcaaaat actttgatta ctgcttttgg agaaattcgc tatgctttag tagctagaaa
    12721 aactatacgc ttacaatacg ataatgcaca agcaagcgaa caatcttaca aaagaatcta
    12781 tgaaattgct aaagaacgct atgatatagg agaaatgtct ttgcaagatt atttagaggc
    12841 acgtcaaaat tggcttaatg ctgcggttgc ttttaataat attaaatatt cttatgccaa
    12901 ttccatagta gatgtaatca aagcatttgg tggaggattt gagcaaagtg aagatacgag
    12961 taaaaatata aaagaagaat caaaaaattt agatatgtct tttagagaat agtttattct
    13021 attctctaaa taaattaaaa atctttgtct aaatctgcat ctgtaatttc ataagccttg
    13081 taaatagcag gcaataattt tcttatagca taatcaaaat gataaaattg cttatatacc
    13141 tcttctggat ttaaattttt agcattctta aaatcaaata cttcagtatc attgattttg
    13201 gcaatatttt catcaaaata agagtaaaac tctgctcttt gtttaaacaa agcatttaaa
    13261 ttttgaacaa ttttggcttt atccatttta tatccttttt aaataattta aaaacttaat
    13321 cccatttttt atttaagaaa taaaaaattt actcctattt tagctaaaaa ttgataaagt
    13381 tatatcttaa atattttaat atataggcca cttatgaatt tatttcaaaa tttagcttta
    13441 aaatactctc atactatgat ggaaaaatcc ctccaaaaag gtttcaatgt cgaactttta
    13501 aaacaacccg aagaaaaaat tccaaaacaa gacaaaagct atatgcttta tgcccatgta
    13561 cctttttgcc atactttttg tccttattgt agctttcata aatattatta tgatgaaaat
    13621 ttagccaaag tatattttca aaatcttaga gaagaaatta aaatcatgaa aaataaaggt
    13681 tttgatttta cctccatgta tgtgggtggt ggtacaacac tgattgatga agaggaatta
    13741 ttaaaaacct tagaactttg taaaaagtta tttaatataa aagaaatttc atgcgaaagc
    13801 gatccaaatc atattgatcc aaataagctt tctatgttta aaggtataat tgatcgttta
    13861 agttgcggga ttcaaagttt tgatgatgaa actttgaaaa aagtggcaag atataataaa
    13921 tttggttcat ctaaagaact tcaagaaaaa atttcaaaag ctttaggaat tttacctatt
    13981 tttagtatag atcttatttt caatcttcca ggacaaaacg aaaaacaact tttaaatgac
    14041 ttagaaattg ctaaaaattt agccccacaa caaatcacaa cctatccttt aatgaaatca
    14101 aatcttacca aagataatat cgctaaaagt ctaggagtga gcattaaaga taatgaattt
    14161 acttattatc aaatcatacg agaatttttt aaagactata cccaaaacaa tggttggagt
    14221 ttttctttag aaaaaaacaa gcttaatgac gaatatgtca gttctcatca tgaataccta
    14281 ggagtaggca gcggagcttt tagcttttta gatggggagc ttttaatcaa tgcatttaat
    14341 ctaaatgatt atgctaaatt tatacaagaa aaacaaaatg ctaatatagc caaagcttgt
    14401 tttgataaaa aagaaattat caaatatgtc tttttaactg aaattttttc agggaaaata
    14461 gaaattgata aatttaataa aactctaaat tgcaatctcg aaaaagaact tttcatagaa
    14521 cttttaggac ttaaaacaag tggtgccatc ataaaagatc aaaatgcttt aatcgcaact
    14581 gaatttggtc aatatctttt tgtggtttta atgaaagatt tttacacagg aatggatctt
    14641 gtgcgcgcag tatttagaga tgataagcgt cttaaaaata aagattatat cgatatcatg
    14701 aaagaaaata ttgatccgct taactccgct agtatggaat ttaaagcgga gacaaactaa
    14761 aagggacgaa caaccatcat taaagcgatg ataataaaca ttatagttgg aaattcatta
    14821 taaattctaa aatattttcc acttttagta gaagtatcat ttgctaaagc ttttaaacaa
    14881 taataattat gtatatgaaa aataatcaaa agtgtaacac aggtaagttt aacatgcata
    14941 aaacccgcac ctaccattaa aacttcctta tgagcatgca acattaaact tcctgtgatt
    15001 aaagtcacaa tcattgcagg agtttgtata taataataaa gctttctttc ttgaattttt
    15061 acaacctcga caaaaccttt attgtcttta tgttcagcat gatacacaaa aagacgaggt
    15121 aaataaaaaa gacccgccat ccaagaaaca aatgccaaat aatgcaccca tttaatccaa
    15181 aaataataat cattaatcca ttctgtcatc ttttttcctt tttttaaata tttcttgtat
    15241 taaaatcaaa gccacactta tatttatcat gacatctgca acattaaaaa tagcaaaatt
    15301 aaaccattta tgccaaaaaa acatatccac tacacctcca tgtataaaac gatccaataa
    15361 atttgaaacg ccggcaccaa gcatcattcc aaaagctatg ctatgagttt ttaaaagtgt
    15421 tctttgccaa aaaagataaa taaaaagcac gccaattaaa gcaagatgta aatattttaa
    15481 attatgttct aaaaaactca acattgaaaa agctacgcct gtatttagag cataagttaa
    15541 atctaggtat tcactctgcc atctaaatcc tgctaaagtt aaggatttta cccattgatc
    15601 aagggcaaaa accaaaacaa aggcacccca aaaataaaaa ataaatttaa aagttttagc
    15661 catttaaagc tttcttaaaa aactccacaa catttttcat ttctttttct aagagcttaa
    15721 tatctctggc ttctagtaaa agtcttatca aattttctgt tccagaatag cgaaataagg
    15781 tattaatatt tttattttct aaatcttttt ttaattcttt taaaccttta attttatcta
    15841 aatctttttt ttctgcaatt ttaagattga ttaaaagctg aggataaggt ttaacttgac
    15901 ccaaaataga acttgcagat tttttcttag aaagcattaa agcactaaat tgcaaggcag
    15961 ctatcaaacc atctccagtt tttgcataat cgctaaaaat aatatgccca ctttgttctc
    16021 caccaaaatt tccaccattg gcttttagtt tttcaagcac atatttatcg ccaacattac
    16081 aagtatcaag ttctatacca tgtttattta aaaactcttt taaagcacca ttactcatta
    16141 tagtagccac aacacttgat tgtaatttac cttgttcttt aagataaagt gccaatacgc
    16201 ccaataaact atccccatta gccacttcgc ctttttcatc tacaaccacc aaacgatctg
    16261 catcaccatc aaaagcaaag cccacatctg cacgcaaacg ctttacctca gcagctaagt
    16321 ttacaggata caaagctcca caattttcat tgatattaag tccattaggt ttatcactca
    16381 ttactataac ttcagcgcct aattccttaa aaacagtagg tgctacctta taagctgccc
    16441 catgagccac atctaaaaca acacgcaaag actttaaagt aagatctttt ggaaaagaat
    16501 ttttaataga aacaatatat cttcctataa catcatcaat tctttttgct tgaccaattt
    16561 tttccatatc taccttagag gcttgtataa gcttatcatc aaaataaatt tcttctattt
    16621 ttttctctat atcttcactg agtttatttc catgagcatc aaaaaattta ataccgttat
    16681 cataataagg attgtgagaa gctgaaatca taatccctgc gtcacaacgc atatcttcag
    16741 ttaagaatgc aatcgcagga gttggcatag gaccaatttg tataacatta tatcctatag
    16801 aagtaagccc tgaaacaata gcattttcta tcatatagcc acttcttctt gtatcttttc
    16861 ctactaagat attattagta atacttttat ctttaaaata aatacccgca gccattgcta
    16921 aacgcatagc caaaaaacta tctaaaaatt cacccgcttt tccacgaact ccatcagttc
    16981 caaaaagtct cattgcaaac ctttctagca aaatttaaag acaattataa caaagctaag
    17041 ataaagaaat ttaaacaagc tctaaaaata gagcttgttt ggaaccttat agttcaggtt
    17101 taggagtttt ttcagtagaa ataggaagtt gtggataaac aattgctggt tttgttcctg
    17161 ttaaggattt taagaaagtt tcaatacttt ttgcttcttt atcagaaatt ttaatgccaa
    17221 gttgcacact acccatttcc ttaatagcat cttttagatt ccaaatagcg ccattatgaa
    17281 aatatggagc agtttcagca acatttctta aagttggagt ttttaccatg ccatttgcat
    17341 cacctttaaa atcacctaaa tttgcaaatt tatatttacc agcaacttca aacgcttgca
    17401 tattgccacc taaattcaca ccattatgac aagctacaca acccttgtct ataaaaagct
    17461 ttaagccttt ttgctcttct tttgttaaag ctttttcatc gccttctaaa aatttatcaa
    17521 aacgagatgg agtgatcaag gttctttcaa aatttgcaat tgcatcagca atattgtcaa
    17581 aatttacacc acttttacca tagatttttt taaactcact cacatattca ggcaatgatg
    17641 aaattttttc tactgcgagt ttagcaggag ttgccatttc aggatcagct tggattggac
    17701 ctttagcttg atcggctaat gttcctgcac gaccatccca aaattgagta ttatttaaaa
    17761 ccgcattata aactgttggt gaatttaaat gatggggatt tgctgtccat ttatgaccta
    17821 ttgcagtact aaccccatct gttccaccaa gtcctacatt gtgacaggta ttacaagaaa
    17881 tgataccact ttttgaaagg cgtggttcaa aataaagctt tttgccaagc tctgcttttt
    17941 caagagtaaa ttcactagcc tttactccat tttgttttaa aatttcatca acaccttttt
    18001 gatcttttgg caaggcaaca agacctgaat ttttagcttc atctataaga cttgcagcat
    18061 ttaagcttga aaaagcaact aaggatgcga ttagcaatgc ttttactttc atttataaac
    18121 tcctattaaa gataaattaa aataaaataa taat
//
